2023-06-30T09:12:22,893 Created temporary directory: /tmp/pip-build-tracker-kfjeipks
2023-06-30T09:12:22,894 Initialized build tracking at /tmp/pip-build-tracker-kfjeipks
2023-06-30T09:12:22,894 Created build tracker: /tmp/pip-build-tracker-kfjeipks
2023-06-30T09:12:22,894 Entered build tracker: /tmp/pip-build-tracker-kfjeipks
2023-06-30T09:12:22,895 Created temporary directory: /tmp/pip-wheel-q_5o1427
2023-06-30T09:12:22,898 Created temporary directory: /tmp/pip-ephem-wheel-cache-34uom8fc
2023-06-30T09:12:22,921 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-30T09:12:22,924 2 location(s) to search for versions of whatshap:
2023-06-30T09:12:22,924 * https://pypi.org/simple/whatshap/
2023-06-30T09:12:22,924 * https://www.piwheels.org/simple/whatshap/
2023-06-30T09:12:22,925 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/
2023-06-30T09:12:22,925 Getting page https://pypi.org/simple/whatshap/
2023-06-30T09:12:22,927 Found index url https://pypi.org/simple/
2023-06-30T09:12:22,986 Fetched page https://pypi.org/simple/whatshap/ as application/vnd.pypi.simple.v1+json
2023-06-30T09:12:22,999   Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.9
2023-06-30T09:12:22,999   Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.10
2023-06-30T09:12:22,999   Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.11
2023-06-30T09:12:23,000   Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.12
2023-06-30T09:12:23,000   Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.13
2023-06-30T09:12:23,000   Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14
2023-06-30T09:12:23,000   Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.14.1
2023-06-30T09:12:23,001   Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.15
2023-06-30T09:12:23,001   Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.16
2023-06-30T09:12:23,001   Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz (from https://pypi.org/simple/whatshap/), version: 0.17
2023-06-30T09:12:23,002   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,002   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,002   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,002   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,003   Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18
2023-06-30T09:12:23,003   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,003   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,004   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,004   Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0
2023-06-30T09:12:23,004   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,005   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,005   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,005   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,006   Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1
2023-06-30T09:12:23,006   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ce/5e/0c32569323ea5e7c036cd9344aa669d92e4a30bbcd4a00dda5483dad67a4/whatshap-1.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,006   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c0/b0/0055bf0099361e24f02851b3df68d75e1165a7e13d8b6c4a5bbf1215f924/whatshap-1.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,006   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/43/09/3fe5c7130f5356b2b7b911539b52c090e2ee6532c14fc3f29fdbf6c2b569/whatshap-1.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,006   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/d1/af/55a5fe140b3a0491c7a19b961b8b6275573194827fb52c17908b2e2699b5/whatshap-1.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,007   Found link https://files.pythonhosted.org/packages/24/ba/a6b7ded0e342f0cdeb268e0e92b1c0812ca9c0804e11efc8c4e7e5cb6be9/whatshap-1.2.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2
2023-06-30T09:12:23,007   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/19/36/1423d4adb6f4d7e58f5fdf8c59aaa8b5cec9d73bb5b2450f17f4089e8438/whatshap-1.2.1-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,007   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/9c/52ce1b726a9b98f628c468b30877edc720c6c8022ae0d13fee6088f894b6/whatshap-1.2.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,008   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/22/c1/d7295d4b3732dc286990b85348401b3bf932bdcb196162f14100472683f3/whatshap-1.2.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,008   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/ff/36/181d416f2c1557879d2647e73964bd0d5d2fd3b79376ec3463435d2363ba/whatshap-1.2.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,008   Found link https://files.pythonhosted.org/packages/e1/e3/84376a94a15622efc336fe72ffb37d448b91abfe5fa21421684495e30eb9/whatshap-1.2.1.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.2.1
2023-06-30T09:12:23,009   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/34/c8/7365412dc082fc9b1a0415cde547086f44e0196148ec60ffdd49afc8ecf5/whatshap-1.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,009   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/76/52/dca5eac4abe3642ccf23b7dbbf4283589e4065c13f5bd9240e84c3227b4e/whatshap-1.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,009   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/08/df/825622346a1833f3b1fc5b89f613b711eb1003cb2a04986ad3016b22bae3/whatshap-1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,009   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/36/4a/c1dc0eb7ebde0b5e5ad75d202f1c994399ca25bab7a31fe56da18185865f/whatshap-1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6)
2023-06-30T09:12:23,010   Found link https://files.pythonhosted.org/packages/14/ad/1e00006ef2a451b8487b267a6e6261472c3730ee9fbf9bf88ab3e33cdb3e/whatshap-1.3.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.3
2023-06-30T09:12:23,010   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/60/13/79e33b73a1b737584ad7e23c662a1b621c417813d0d8d81936fe0fe6608f/whatshap-1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,010   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/5c/c5/96fe2f18f74aee649db37a25a583d01219c01dfae7b33af7df36f5eee414/whatshap-1.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,010   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/16/12/069f3e690d0af16ee52c63dcad13bfb35b8fbd9b03f56ea8682a8ed47bf6/whatshap-1.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,011   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/25/cf/3c12968b3e30141df2e518fe234bf38341db7474df5f890bd1c67664541f/whatshap-1.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,011   Found link https://files.pythonhosted.org/packages/15/1e/1b29e356fc0b8a1fbbffe808c02a67eae8ebd922a78567aa5eb867b47070/whatshap-1.4.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.4
2023-06-30T09:12:23,011   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/b6/5b/6e5b19bbab49bf45651cdf2eac3fe33a06d7959f65cfeba15dd08bae35e9/whatshap-1.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,012   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/14/cf/91e8519226ffc8d3459582832b7d0cdf4fda7b4c324deecfadce3f55be55/whatshap-1.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,012   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/be/b4/0b3c2b6952cf006809cc1133e3c4c4b907458949bd5fa263114d26ea1670/whatshap-1.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,012   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/d3/37e4980f972894b48ee1ec36c98e6c3a530b37eed7721bb9010626e920b6/whatshap-1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,013   Found link https://files.pythonhosted.org/packages/2a/0a/71c5db75b44c886e492294328b41f970bfcfdef1c409e8ed3981a0ff519e/whatshap-1.5.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.5
2023-06-30T09:12:23,013   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/f8/76/4a671a933194f2ccbf2fc70513516312fae6054fbdbe69b250919082fa4c/whatshap-1.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,013   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/3f/86/778bbef5c06bdf48c738fdcd64c0a947398d78a168d1dfc949fc7665afa2/whatshap-1.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,013   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/9d/60/749fe7dcbb28f21abc3190a171443c8f78d7a20a1a1dfac592966fb55dc4/whatshap-1.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,013   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/cd/76/28f1ce30b1cf0a26eae2a508d057b78425595104780955b36e938ac7fcbe/whatshap-1.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,014   Found link https://files.pythonhosted.org/packages/e8/90/09feab715cafd8ca8bb664dc9dee9058a4db861adf50e0c1a4ebc86b07cc/whatshap-1.6.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.6
2023-06-30T09:12:23,014   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/63/0a/21389d1b959cd489c4a0abf1343e9bcff61d45af7de9470ffa350d2eeb4d/whatshap-1.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,014   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e0/a3/dff518edaec7aa8efd2c7f1df8a494b7c4a0b49f7e6350c13228dee97351/whatshap-1.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,015   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/c1/34/785976fd423c187d90e2be419af906a366c038a57503e2e4fb6599aca868/whatshap-1.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,015   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e1/81/8eaf7be1255b732643ce82307a72b015230b14842a15fc83b17bd264282d/whatshap-1.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,015   Found link https://files.pythonhosted.org/packages/1f/44/d11315edea202d6399af062186a30ba12a17c489115f56ed417e25921453/whatshap-1.7.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 1.7
2023-06-30T09:12:23,016   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/e2/4e/b4bf39415abe9944df3062b4e9c1c8ce901cae6ba1b3780d0a3c23c3e146/whatshap-2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,016   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/fa/f1/45172b5e64640fa04cdc3af57fc9848cf5d94d163dee6646a9aae67dfccb/whatshap-2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,016   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/48/aa/31e1727bb7f7f770df8192d2aa096d988d0a4345e3842c89c32badedd7a9/whatshap-2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,016   Skipping link: No binaries permitted for whatshap: https://files.pythonhosted.org/packages/8e/5d/9af0551ffaa026d33b612a1bdfccdeabc4b93fd0af6313b57671aea0648a/whatshap-2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7)
2023-06-30T09:12:23,017   Found link https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz (from https://pypi.org/simple/whatshap/) (requires-python:>=3.7), version: 2.0
2023-06-30T09:12:23,017 Fetching project page and analyzing links: https://www.piwheels.org/simple/whatshap/
2023-06-30T09:12:23,017 Getting page https://www.piwheels.org/simple/whatshap/
2023-06-30T09:12:23,018 Found index url https://www.piwheels.org/simple/
2023-06-30T09:12:23,182 Fetched page https://www.piwheels.org/simple/whatshap/ as text/html
2023-06-30T09:12:23,195   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv7l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,195   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp37-cp37m-linux_armv6l.whl#sha256=b81040280694883d7079a4b3e449bba14fc4d30f293e9a1d76a1e0578ac01cba (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,196   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv6l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,196   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp34-cp34m-linux_armv7l.whl#sha256=226c2159db0239fcad3b0d9731ae11ad7f161e18a0f51b5d76fbb7aa02bc5b12 (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,196   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv6l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,196   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.18-cp35-cp35m-linux_armv7l.whl#sha256=a01e2ba831e1062cac18678005ed864422821a147a90381d1d561db6daaa240b (from https://www.piwheels.org/simple/whatshap/) (requires-python:>=3.4)
2023-06-30T09:12:23,197   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv6l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,197   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp37-cp37m-linux_armv7l.whl#sha256=a52131a2cecf121ac6b1d8a2f3d6b6f81722f159121dddb88c43589f05db1c48 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,197   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv6l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,197   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp35-cp35m-linux_armv7l.whl#sha256=bcc411757fef61409f32f77b8b87266850cb245c80f7e55030a701e7e8f9aaf2 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,198   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv7l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,198   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.17-cp34-cp34m-linux_armv6l.whl#sha256=57ed4c07b260ca5103118fe34d7875af69bcda84b3267f3c8a96147f5475b355 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,198   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv7l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,198   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp34-cp34m-linux_armv6l.whl#sha256=f220db8040faaacd90867ade6d504314e1412588bf15490cd43486b80012a5cb (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,199   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv6l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,199   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.16-cp35-cp35m-linux_armv7l.whl#sha256=e89c850742d969409e79942e188b0ccef03000e5991929a628b61e75ccf48baa (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,199   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp37-cp37m-linux_armv7l.whl#sha256=fe3e47cf1e67574d1d04b795d1d03a06c7c8248004a6f79aed017577f212dfac (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,199   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp37-cp37m-linux_armv6l.whl#sha256=fe3e47cf1e67574d1d04b795d1d03a06c7c8248004a6f79aed017577f212dfac (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,200   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv6l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,200   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp35-cp35m-linux_armv7l.whl#sha256=11a60ad9e4b9824b86108d6157dbb52400aaa31d739e08a8ccefaac8f79e4d3c (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,200   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv7l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,200   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.15-cp34-cp34m-linux_armv6l.whl#sha256=8a603d7a9a636e78f0f8297e9ad41b9b829dc8bb2bed01428406d595852b7bb8 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,200   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,201   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=22ddc6e868a47bcdfd91808303be8ad0d952e65ae74767ea3d49bdd16cdfb4f2 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,201   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,201   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=d814d13967bc9b15f994573546cdeed83bac50694e44fb4105c3ae83bbfd97b7 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,201   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv6l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,201   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp35-cp35m-linux_armv7l.whl#sha256=e0ac1dca2abae0b88b1fa764b4d4ca853bb6bc4b02de20b09e8d51448b20aafc (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,202   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv6l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,202   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.14-cp34-cp34m-linux_armv7l.whl#sha256=3ddde88fb4fed1664ec3d46039aca72142fa5dcde177a40f49c2cec09b407f9f (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,202   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv7l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,202   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp35-cp35m-linux_armv6l.whl#sha256=7989e2894821071f43ee744ecc59f1abfa98748cf39719c28c881e6098c74037 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,202   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv6l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,203   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.13-cp34-cp34m-linux_armv7l.whl#sha256=856ee3772161445e2245334076268dca61b504968b90dab43b07943ed6ddeebd (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,203   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv6l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,203   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp35-cp35m-linux_armv7l.whl#sha256=77398db6e7b93ab468c1a87e64d128696987ae7573bf6bb87d6d4ad6853c68cd (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,203   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv7l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,203   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.12-cp34-cp34m-linux_armv6l.whl#sha256=61ca54a67abc75d161b394f41a6a10efa1b7e25ce94a20fb5e17bf768fbcc153 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,204   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv6l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,204   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp34-cp34m-linux_armv7l.whl#sha256=528f0411be5d1bd6559dd1531b52beb67ca918a09fd418fd2921199f88ff71ef (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,204   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv6l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,204   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.11-cp35-cp35m-linux_armv7l.whl#sha256=48a0027e08f6762e26e61673a253a95ecda25e8f32a31a8cbd3655365c25c051 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,204   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv6l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,205   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.10-cp34-cp34m-linux_armv7l.whl#sha256=4833edfe84ef3c9eeb5c68262dad5be3a637379d59eae98ed10774ee66a5a925 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,205   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv6l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,205   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp34-cp34m-linux_armv7l.whl#sha256=78adbda77e2ec4fe0f66ea86826ad8d025f743ba6bbf39d050783ec1cb07c83a (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,205   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv7l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,205   Skipping link: No binaries permitted for whatshap: https://www.piwheels.org/simple/whatshap/whatshap-0.9-cp35-cp35m-linux_armv6l.whl#sha256=d3ebf8ce2fc15a5397ece9beb236c6e54c2653d414d727f48aae8e025b674a14 (from https://www.piwheels.org/simple/whatshap/)
2023-06-30T09:12:23,206 Skipping link: not a file: https://www.piwheels.org/simple/whatshap/
2023-06-30T09:12:23,206 Skipping link: not a file: https://pypi.org/simple/whatshap/
2023-06-30T09:12:23,226 Given no hashes to check 1 links for project 'whatshap': discarding no candidates
2023-06-30T09:12:23,243 Collecting whatshap==2.0
2023-06-30T09:12:23,245   Created temporary directory: /tmp/pip-unpack-et3i7dh0
2023-06-30T09:12:23,300   Downloading whatshap-2.0.tar.gz (5.4 MB)
2023-06-30T09:12:24,908   Added whatshap==2.0 from https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz to build tracker '/tmp/pip-build-tracker-kfjeipks'
2023-06-30T09:12:24,915   Created temporary directory: /tmp/pip-build-env-gpre5su1
2023-06-30T09:12:24,926   Installing build dependencies: started
2023-06-30T09:12:24,927   Running command pip subprocess to install build dependencies
2023-06-30T09:12:26,108   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-06-30T09:12:26,474   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-30T09:12:28,100   Collecting setuptools>=63
2023-06-30T09:12:28,172     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB)
2023-06-30T09:12:28,526   Collecting setuptools_scm[toml]
2023-06-30T09:12:28,542     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
2023-06-30T09:12:29,985   Collecting cython~=0.29.20
2023-06-30T09:12:30,357     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.35-cp39-cp39-linux_armv7l.whl (5.0 MB)
2023-06-30T09:12:30,845   Collecting packaging>=20.0 (from setuptools_scm[toml])
2023-06-30T09:12:30,863     Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB)
2023-06-30T09:12:30,990   Collecting typing-extensions (from setuptools_scm[toml])
2023-06-30T09:12:31,007     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.7.0-py3-none-any.whl (33 kB)
2023-06-30T09:12:31,129   Collecting tomli>=1.0.0 (from setuptools_scm[toml])
2023-06-30T09:12:31,145     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-06-30T09:12:33,182   Installing collected packages: typing-extensions, tomli, setuptools, packaging, cython, setuptools_scm
2023-06-30T09:12:38,319     Creating /tmp/pip-build-env-gpre5su1/overlay/bin
2023-06-30T09:12:38,322     changing mode of /tmp/pip-build-env-gpre5su1/overlay/bin/cygdb to 755
2023-06-30T09:12:38,324     changing mode of /tmp/pip-build-env-gpre5su1/overlay/bin/cython to 755
2023-06-30T09:12:38,326     changing mode of /tmp/pip-build-env-gpre5su1/overlay/bin/cythonize to 755
2023-06-30T09:12:38,526   Successfully installed cython-0.29.35 packaging-23.1 setuptools-68.0.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.7.0
2023-06-30T09:12:38,862   Installing build dependencies: finished with status 'done'
2023-06-30T09:12:38,867   Getting requirements to build wheel: started
2023-06-30T09:12:38,868   Running command Getting requirements to build wheel
2023-06-30T09:12:46,925   warning: whatshap/priorityqueue.pyx:201:7: Unreachable code
2023-06-30T09:12:48,412   Compiling whatshap/core.pyx because it depends on /tmp/pip-build-env-gpre5su1/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-06-30T09:12:48,413   Compiling whatshap/polyphase/solver.pyx because it depends on /tmp/pip-build-env-gpre5su1/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-06-30T09:12:48,413   Compiling whatshap/readselect.pyx because it depends on /tmp/pip-build-env-gpre5su1/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-06-30T09:12:48,413   Compiling whatshap/priorityqueue.pyx because it depends on /tmp/pip-build-env-gpre5su1/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-06-30T09:12:48,413   Compiling whatshap/align.pyx because it depends on /tmp/pip-build-env-gpre5su1/overlay/lib/python3.9/site-packages/Cython/Includes/libc/__init__.pxd.
2023-06-30T09:12:48,413   [1/5] Cythonizing whatshap/align.pyx
2023-06-30T09:12:48,414   [2/5] Cythonizing whatshap/core.pyx
2023-06-30T09:12:48,414   [3/5] Cythonizing whatshap/polyphase/solver.pyx
2023-06-30T09:12:48,414   [4/5] Cythonizing whatshap/priorityqueue.pyx
2023-06-30T09:12:48,414   [5/5] Cythonizing whatshap/readselect.pyx
2023-06-30T09:12:48,530   /tmp/pip-build-env-gpre5su1/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-06-30T09:12:48,530     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-06-30T09:12:49,012   running egg_info
2023-06-30T09:12:49,019   writing whatshap.egg-info/PKG-INFO
2023-06-30T09:12:49,021   writing dependency_links to whatshap.egg-info/dependency_links.txt
2023-06-30T09:12:49,023   writing entry points to whatshap.egg-info/entry_points.txt
2023-06-30T09:12:49,025   writing requirements to whatshap.egg-info/requires.txt
2023-06-30T09:12:49,027   writing top-level names to whatshap.egg-info/top_level.txt
2023-06-30T09:12:49,095   listing git files failed - pretending there aren't any
2023-06-30T09:12:49,109   reading manifest file 'whatshap.egg-info/SOURCES.txt'
2023-06-30T09:12:49,121   reading manifest template 'MANIFEST.in'
2023-06-30T09:12:49,131   adding license file 'LICENSE'
2023-06-30T09:12:49,150   writing manifest file 'whatshap.egg-info/SOURCES.txt'
2023-06-30T09:12:50,045   Getting requirements to build wheel: finished with status 'done'
2023-06-30T09:12:50,061   Installing backend dependencies: started
2023-06-30T09:12:50,062   Running command pip subprocess to install backend dependencies
2023-06-30T09:12:51,384   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-06-30T09:12:51,777   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-06-30T09:12:52,256   Collecting wheel
2023-06-30T09:12:52,275     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-06-30T09:12:53,746   Installing collected packages: wheel
2023-06-30T09:12:53,986     Creating /tmp/pip-build-env-gpre5su1/normal/bin
2023-06-30T09:12:53,989     changing mode of /tmp/pip-build-env-gpre5su1/normal/bin/wheel to 755
2023-06-30T09:12:54,004   Successfully installed wheel-0.40.0
2023-06-30T09:12:54,219   Installing backend dependencies: finished with status 'done'
2023-06-30T09:12:54,221   Created temporary directory: /tmp/pip-modern-metadata-zjwkglnj
2023-06-30T09:12:54,224   Preparing metadata (pyproject.toml): started
2023-06-30T09:12:54,225   Running command Preparing metadata (pyproject.toml)
2023-06-30T09:12:55,564   /tmp/pip-build-env-gpre5su1/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-06-30T09:12:55,565     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-06-30T09:12:55,862   running dist_info
2023-06-30T09:12:55,870   creating /tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info
2023-06-30T09:12:55,877   writing /tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info/PKG-INFO
2023-06-30T09:12:55,881   writing dependency_links to /tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info/dependency_links.txt
2023-06-30T09:12:55,883   writing entry points to /tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info/entry_points.txt
2023-06-30T09:12:55,884   writing requirements to /tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info/requires.txt
2023-06-30T09:12:55,885   writing top-level names to /tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info/top_level.txt
2023-06-30T09:12:55,887   writing manifest file '/tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info/SOURCES.txt'
2023-06-30T09:12:55,957   listing git files failed - pretending there aren't any
2023-06-30T09:12:55,967   reading manifest file '/tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info/SOURCES.txt'
2023-06-30T09:12:55,970   reading manifest template 'MANIFEST.in'
2023-06-30T09:12:55,985   adding license file 'LICENSE'
2023-06-30T09:12:55,994   writing manifest file '/tmp/pip-modern-metadata-zjwkglnj/whatshap.egg-info/SOURCES.txt'
2023-06-30T09:12:55,996   creating '/tmp/pip-modern-metadata-zjwkglnj/whatshap-2.0.dist-info'
2023-06-30T09:12:56,194   Preparing metadata (pyproject.toml): finished with status 'done'
2023-06-30T09:12:56,201   Source in /tmp/pip-wheel-q_5o1427/whatshap_8debf6d62c31413da8eb50c27d61e5b2 has version 2.0, which satisfies requirement whatshap==2.0 from https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz
2023-06-30T09:12:56,201   Removed whatshap==2.0 from https://files.pythonhosted.org/packages/c3/10/b53674fa02c1d5b23887f5a6b0fbf6936ce35dcd08f65e994c18601b20cb/whatshap-2.0.tar.gz from build tracker '/tmp/pip-build-tracker-kfjeipks'
2023-06-30T09:12:56,208 Created temporary directory: /tmp/pip-unpack-idksz35z
2023-06-30T09:12:56,208 Building wheels for collected packages: whatshap
2023-06-30T09:12:56,216   Created temporary directory: /tmp/pip-wheel-9biworo3
2023-06-30T09:12:56,216   Destination directory: /tmp/pip-wheel-9biworo3
2023-06-30T09:12:56,218   Building wheel for whatshap (pyproject.toml): started
2023-06-30T09:12:56,219   Running command Building wheel for whatshap (pyproject.toml)
2023-06-30T09:12:57,476   /tmp/pip-build-env-gpre5su1/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-06-30T09:12:57,477     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-06-30T09:12:57,751   running bdist_wheel
2023-06-30T09:12:57,769   running build
2023-06-30T09:12:57,769   running build_py
2023-06-30T09:12:57,777   creating build
2023-06-30T09:12:57,778   creating build/lib.linux-armv7l-cpython-39
2023-06-30T09:12:57,779   creating build/lib.linux-armv7l-cpython-39/doc
2023-06-30T09:12:57,780   copying doc/conf.py -> build/lib.linux-armv7l-cpython-39/doc
2023-06-30T09:12:57,784   creating build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,785   copying tests/test_phasing.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,787   copying tests/test_threading.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,789   copying tests/test_pedigree.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,791   copying tests/test_verification.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,793   copying tests/test_run_find_snv_candidates.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,794   copying tests/test_run_phase.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,797   copying tests/test_genotyping.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,800   copying tests/test_run_split.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,802   copying tests/test_run_genotype.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,804   copying tests/test_run_unphase.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,806   copying tests/test_pedigreephasing.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,808   copying tests/test_priorityqueue.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,811   copying tests/test_graph.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,812   copying tests/test_run_haplotag.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,815   copying tests/test_run_stats.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,817   copying tests/test_merge_reads.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,819   copying tests/test_run_hapcut2vcf.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,821   copying tests/test_readselect.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,823   copying tests/test_utils.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,824   copying tests/test_geneticmap.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,826   copying tests/test_reads.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,828   copying tests/test_pedigreegenotyping.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,831   copying tests/test_vcf.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,834   copying tests/test_pedreader.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,835   copying tests/test_clusterediting.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,838   copying tests/test_main.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,840   copying tests/test_readsetreader.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,842   copying tests/test_align.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,844   copying tests/test_offspringscoring.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,846   copying tests/test_run_polyphase.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,848   copying tests/test_readscoring.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,850   copying tests/test_bam.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,851   copying tests/test_polyphasegenetic.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,853   copying tests/test_allelematrix.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,856   copying tests/test_reorder.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,858   copying tests/test_run_compare.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,860   copying tests/test_variantselection.py -> build/lib.linux-armv7l-cpython-39/tests
2023-06-30T09:12:57,863   creating build/lib.linux-armv7l-cpython-39/misc
2023-06-30T09:12:57,864   copying misc/example.py -> build/lib.linux-armv7l-cpython-39/misc
2023-06-30T09:12:57,867   creating build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,868   copying whatshap/coverage.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,870   copying whatshap/merge.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,872   copying whatshap/variants.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,875   copying whatshap/_version.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,876   copying whatshap/bam.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,879   copying whatshap/testhelpers.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,881   copying whatshap/variant.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,882   copying whatshap/__main__.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,884   copying whatshap/vcf.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,887   copying whatshap/graph.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,889   copying whatshap/__init__.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,891   copying whatshap/args.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,893   copying whatshap/pedigree.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,895   copying whatshap/verification.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,897   copying whatshap/utils.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,899   copying whatshap/timer.py -> build/lib.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:57,904   creating build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,905   copying whatshap/polyphase/offspringscoring.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,908   copying whatshap/polyphase/algorithm.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,910   copying whatshap/polyphase/threading.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,913   copying whatshap/polyphase/plots.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,916   copying whatshap/polyphase/variantselection.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,918   copying whatshap/polyphase/clusterarrangement.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,920   copying whatshap/polyphase/__init__.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,922   copying whatshap/polyphase/reorder.py -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:57,926   creating build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,927   copying whatshap/cli/split.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,929   copying whatshap/cli/unphase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,931   copying whatshap/cli/hapcut2vcf.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,933   copying whatshap/cli/polyphasegenetic.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,936   copying whatshap/cli/haplotag.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,939   copying whatshap/cli/polyphase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,941   copying whatshap/cli/find_snv_candidates.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,943   copying whatshap/cli/phase.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,946   copying whatshap/cli/__init__.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,949   copying whatshap/cli/stats.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,951   copying whatshap/cli/genotype.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,954   copying whatshap/cli/compare.py -> build/lib.linux-armv7l-cpython-39/whatshap/cli
2023-06-30T09:12:57,957   running egg_info
2023-06-30T09:12:57,969   writing whatshap.egg-info/PKG-INFO
2023-06-30T09:12:57,971   writing dependency_links to whatshap.egg-info/dependency_links.txt
2023-06-30T09:12:57,972   writing entry points to whatshap.egg-info/entry_points.txt
2023-06-30T09:12:57,974   writing requirements to whatshap.egg-info/requires.txt
2023-06-30T09:12:57,975   writing top-level names to whatshap.egg-info/top_level.txt
2023-06-30T09:12:58,018   listing git files failed - pretending there aren't any
2023-06-30T09:12:58,027   reading manifest file 'whatshap.egg-info/SOURCES.txt'
2023-06-30T09:12:58,069   reading manifest template 'MANIFEST.in'
2023-06-30T09:12:58,078   adding license file 'LICENSE'
2023-06-30T09:12:58,097   writing manifest file 'whatshap.egg-info/SOURCES.txt'
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2023-06-30T09:12:58,599   copying tests/data/haplotag.missing_chr.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,601   copying tests/data/haplotag.missing_chr.vcf.gz.tbi -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,603   copying tests/data/haplotag.supplementary.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,612   copying tests/data/haplotag.supplementary.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,615   copying tests/data/haplotag.supplementary.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,617   copying tests/data/haplotag.supplementary.vcf.gz.tbi -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,619   copying tests/data/haplotag.without_chr2.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,621   copying tests/data/haplotag.without_chr2.vcf.gz.csi -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,623   copying tests/data/haplotag_1.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,626   copying tests/data/haplotag_2.bcf -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,633   copying tests/data/haplotag_noRG.bam -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,651   copying tests/data/haplotag_noSM.bam -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,661   copying tests/data/haplotag_poly.bam -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,667   copying tests/data/haplotag_poly.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,670   copying tests/data/haplotag_sample.bam -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,677   copying tests/data/haplotag_sample.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,680   copying tests/data/haplotag_triploid.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,683   copying tests/data/haplotag_triploid.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,685   copying tests/data/haplotag_triploid.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,687   copying tests/data/haplotag_triploid.vcf.gz.tbi -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,689   copying tests/data/haplotag_with_csi_index.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,691   copying tests/data/haplotag_with_csi_index.vcf.gz.csi -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,693   copying tests/data/hexadecaploid.chr22.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,695   copying tests/data/indels.sam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,697   copying tests/data/indels.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,699   copying tests/data/missing-headers.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,701   copying tests/data/multiallelic.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,703   copying tests/data/multisample.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,705   copying tests/data/no-readgroup.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,707   copying tests/data/no-readgroup.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,708   copying tests/data/not-indexed.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,710   copying tests/data/not-indexed.fasta -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,712   copying tests/data/oneread-readgroup-without-sample.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,714   copying tests/data/oneread-readgroup-without-sample.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,716   copying tests/data/oneread-ref.fasta -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,718   copying tests/data/oneread-ref.fasta.fai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,720   copying tests/data/oneread.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,721   copying tests/data/oneread.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,723   copying tests/data/oneread.crai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,725   copying tests/data/oneread.cram -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,727   copying tests/data/onevariant.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,729   copying tests/data/onevariant.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,731   copying tests/data/paired_end.sorted.sam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,733   copying tests/data/paired_end.sorted.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,736   copying tests/data/ped_samples.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,740   copying tests/data/ped_samples.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,743   copying tests/data/ped_samples.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,745   copying tests/data/pedigree.ped -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,747   copying tests/data/phased-blocks.blocks.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,749   copying tests/data/phased-blocks.reads.bam -> build/lib.linux-armv7l-cpython-39/tests/data
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2023-06-30T09:12:58,756   copying tests/data/phased-blocks.variants.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,758   copying tests/data/phased-via-HP-polyploid.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,760   copying tests/data/phased-via-HP.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,762   copying tests/data/phased-via-PS-polyploid.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,764   copying tests/data/phased-via-PS.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,765   copying tests/data/phased-via-mixed-HP-PS.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,767   copying tests/data/phased.poly1.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,769   copying tests/data/phased.poly2.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,771   copying tests/data/phased.poly3.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,773   copying tests/data/phased1.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,775   copying tests/data/phased2.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,777   copying tests/data/phased3.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,779   copying tests/data/phased_overlapping.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,781   copying tests/data/phased_single_sample1.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,783   copying tests/data/phased_single_sample2.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,785   copying tests/data/phasedinput.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,787   copying tests/data/polyphasegenetic.ped1.txt -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,789   copying tests/data/polyphasegenetic.ped2.txt -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,790   copying tests/data/polyphasegenetic.test.parents.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,793   copying tests/data/polyphasegenetic.test.progeny.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,796   copying tests/data/polyphasegenetic.test.progeny.vcf.gz.csi -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,798   copying tests/data/polyploid.chr22.42M.12k.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,812   copying tests/data/polyploid.chr22.42M.12k.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,814   copying tests/data/polyploid.chr22.42M.12k.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,816   copying tests/data/polyploid.chr22.inconsistent.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,818   copying tests/data/polyploid.chr22.phased.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,821   copying tests/data/polyploid.chr22.unphased.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,823   copying tests/data/polyploid.cuts.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,825   copying tests/data/polyploid.cuts.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,827   copying tests/data/polyploid.cuts.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,829   copying tests/data/polyploid.human1.chr22.42M.5k.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,843   copying tests/data/polyploid.human1.chr22.42M.5k.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,845   copying tests/data/polyploid.human2.chr22.42M.5k.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,861   copying tests/data/polyploid.human2.chr22.42M.5k.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,864   copying tests/data/polyploid.indels.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,866   copying tests/data/polyploid.indels.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,868   copying tests/data/polyploid.indels.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,870   copying tests/data/polyploid.multisample.chr22.42M.5k.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,872   copying tests/data/quartet.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,874   copying tests/data/quartet.vcf.gz.tbi -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,876   copying tests/data/quartet2.ped -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,878   copying tests/data/quartet2.sam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,880   copying tests/data/quartet2.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,883   copying tests/data/random0.fasta -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,885   copying tests/data/random0.fasta.fai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,887   copying tests/data/reads-no-sequence.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,889   copying tests/data/reads-no-sequence.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,891   copying tests/data/reads-no-sequence.haplotags.tsv -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,893   copying tests/data/recombination_breaks.map -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,895   copying tests/data/recombination_breaks.ped -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,897   copying tests/data/recombination_breaks.sorted.sam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,909   copying tests/data/string_typed_ps_tag.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,911   copying tests/data/test_dist_geno.sam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,915   copying tests/data/test_dist_geno.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,917   copying tests/data/trio-mendelian-conflict.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,920   copying tests/data/trio-merged-blocks.sam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,939   copying tests/data/trio-merged-blocks.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,941   copying tests/data/trio-missing-genotypes.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,944   copying tests/data/trio-symbolic-alt.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,946   copying tests/data/trio-two-chromosomes.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,948   copying tests/data/trio.map -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,950   copying tests/data/trio.pacbio.sam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,954   copying tests/data/trio.ped -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,956   copying tests/data/trio.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,958   copying tests/data/trio_genotype_likelihoods.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,960   copying tests/data/trio_genotype_log_likelihoods.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,962   copying tests/data/trio_paired_end.ped -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,964   copying tests/data/unknown-genotype.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,966   copying tests/data/unmapped.bam -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,968   copying tests/data/unmapped.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,971   copying tests/data/unphased.vcf -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,973   copying tests/data/zero-genetic-distance.map -> build/lib.linux-armv7l-cpython-39/tests/data
2023-06-30T09:12:58,975   creating build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,976   copying tests/data/short-genome/.gitignore -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,978   copying tests/data/short-genome/short-hap1.fasta -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,980   copying tests/data/short-genome/short-hap2.fasta -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,982   copying tests/data/short-genome/short-one-read-duplicate.sam -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,984   copying tests/data/short-genome/short-reads.fasta -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,986   copying tests/data/short-genome/short-ref.fasta -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,988   copying tests/data/short-genome/short.sam -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,990   copying tests/data/short-genome/short.vcf -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,992   copying tests/data/short-genome/wrongchromosome.vcf -> build/lib.linux-armv7l-cpython-39/tests/data/short-genome
2023-06-30T09:12:58,994   creating build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:58,995   copying tests/data/pacbio/.gitignore -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:58,998   copying tests/data/pacbio/Makefile -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,001   copying tests/data/pacbio/hapcut.txt -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,003   copying tests/data/pacbio/haplotags.txt -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,006   copying tests/data/pacbio/pacbio.bam -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,011   copying tests/data/pacbio/pacbio.bam.bai -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,014   copying tests/data/pacbio/pacbio.crai -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,016   copying tests/data/pacbio/pacbio.cram -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,020   copying tests/data/pacbio/phased.vcf -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,023   copying tests/data/pacbio/phased.vcf.gz -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,025   copying tests/data/pacbio/phased.vcf.gz.tbi -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,028   copying tests/data/pacbio/phased_hapchat.vcf -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,031   copying tests/data/pacbio/reference.fasta -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,034   copying tests/data/pacbio/reference.fasta.fai -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,037   copying tests/data/pacbio/variants.vcf -> build/lib.linux-armv7l-cpython-39/tests/data/pacbio
2023-06-30T09:12:59,039   copying whatshap/polyphase/solver.cpp -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:59,058   copying whatshap/polyphase/solver.pxd -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:59,060   copying whatshap/polyphase/solver.pyi -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:59,063   copying whatshap/polyphase/solver.pyx -> build/lib.linux-armv7l-cpython-39/whatshap/polyphase
2023-06-30T09:12:59,080   running build_ext
2023-06-30T09:12:59,089   building 'whatshap.core' extension
2023-06-30T09:12:59,091   creating build/temp.linux-armv7l-cpython-39
2023-06-30T09:12:59,091   creating build/temp.linux-armv7l-cpython-39/src
2023-06-30T09:12:59,093   creating build/temp.linux-armv7l-cpython-39/src/hapchat
2023-06-30T09:12:59,095   creating build/temp.linux-armv7l-cpython-39/whatshap
2023-06-30T09:12:59,096   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/backwardcolumniterator.cpp -o build/temp.linux-armv7l-cpython-39/src/backwardcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:00,713   In file included from /usr/include/c++/10/cassert:44,
2023-06-30T09:13:00,714                    from src/backwardcolumniterator.cpp:1:
2023-06-30T09:13:00,714   src/backwardcolumniterator.cpp: In member function ‘void BackwardColumnIterator::jump_to_column(int)’:
2023-06-30T09:13:00,714   src/backwardcolumniterator.cpp:121:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-06-30T09:13:00,714     121 |  assert(k < positions->size());
2023-06-30T09:13:00,715         |         ~~^~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:00,715   src/backwardcolumniterator.cpp:140:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-06-30T09:13:00,715     140 |     assert(active_entry < read->getVariantCount());
2023-06-30T09:13:00,715         |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:02,245   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/binomial.cpp -o build/temp.linux-armv7l-cpython-39/src/binomial.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:02,510   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-cpython-39/src/columnindexingiterator.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:03,591   src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’:
2023-06-30T09:13:03,591   src/columnindexingiterator.cpp:90:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-06-30T09:13:03,592      90 |  for(int j=0; j< parent->read_ids.size(); ++j) {
2023-06-30T09:13:03,592         |               ~^~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:03,592   src/columnindexingiterator.cpp:92:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:03,592      92 |   if(m != -1) {
2023-06-30T09:13:03,592         |      ~~^~~~~
2023-06-30T09:13:03,592   src/columnindexingiterator.cpp:89:15: warning: unused variable ‘s’ [-Wunused-variable]
2023-06-30T09:13:03,593      89 |  unsigned int s = 1;
2023-06-30T09:13:03,593         |               ^
2023-06-30T09:13:03,865   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-cpython-39/src/columnindexingscheme.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:04,910   src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector<unsigned int>&)’:
2023-06-30T09:13:04,911   src/columnindexingscheme.cpp:22:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-06-30T09:13:04,911      22 |   while ((i<previous_column->read_ids.size()) && (j<read_ids.size())) {
2023-06-30T09:13:04,911         |           ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:04,911   src/columnindexingscheme.cpp:22:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-06-30T09:13:04,911      22 |   while ((i<previous_column->read_ids.size()) && (j<read_ids.size())) {
2023-06-30T09:13:04,912         |                                                   ~^~~~~~~~~~~~~~~~
2023-06-30T09:13:04,914   src/columnindexingscheme.cpp: In member function ‘void ColumnIndexingScheme::set_next_column(const ColumnIndexingScheme*)’:
2023-06-30T09:13:04,914   src/columnindexingscheme.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-06-30T09:13:04,914      71 |  while ((i<next_column->read_ids.size()) && (j<read_ids.size())) {
2023-06-30T09:13:04,914         |          ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:04,914   src/columnindexingscheme.cpp:71:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2023-06-30T09:13:04,915      71 |  while ((i<next_column->read_ids.size()) && (j<read_ids.size())) {
2023-06-30T09:13:04,915         |                                              ~^~~~~~~~~~~~~~~~
2023-06-30T09:13:05,401   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/columniterator.cpp -o build/temp.linux-armv7l-cpython-39/src/columniterator.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:06,917   In file included from /usr/include/c++/10/cassert:44,
2023-06-30T09:13:06,917                    from src/columniterator.cpp:1:
2023-06-30T09:13:06,918   src/columniterator.cpp: In member function ‘std::unique_ptr<std::vector<const Entry*> > ColumnIterator::get_next()’:
2023-06-30T09:13:06,918   src/columniterator.cpp:105:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-06-30T09:13:06,918     105 |    assert(list_it->active_entry < read->getVariantCount());
2023-06-30T09:13:06,918         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:06,934   src/columniterator.cpp: In member function ‘void ColumnIterator::jump_to_column(size_t)’:
2023-06-30T09:13:06,935   src/columniterator.cpp:161:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-06-30T09:13:06,935     161 |     assert(active_entry < read->getVariantCount());
2023-06-30T09:13:06,935         |            ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:08,525   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/entry.cpp -o build/temp.linux-armv7l-cpython-39/src/entry.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:09,514   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotype.cpp -o build/temp.linux-armv7l-cpython-39/src/genotype.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:11,757   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotypecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:14,443   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotypedistribution.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypedistribution.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:15,575   src/genotypedistribution.cpp: In member function ‘double GenotypeDistribution::errorProbability() const’:
2023-06-30T09:13:15,576   src/genotypedistribution.cpp:55:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-06-30T09:13:15,576      55 |   if (i == best_index) continue;
2023-06-30T09:13:15,576         |       ~~^~~~~~~~~~~~~
2023-06-30T09:13:16,032   In file included from /usr/include/c++/10/vector:72,
2023-06-30T09:13:16,033                    from src/genotypedistribution.h:4,
2023-06-30T09:13:16,033                    from src/genotypedistribution.cpp:5:
2023-06-30T09:13:16,033   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-06-30T09:13:16,033   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-06-30T09:13:16,033     426 |       vector<_Tp, _Alloc>::
2023-06-30T09:13:16,033         |       ^~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:16,068   In file included from /usr/include/c++/10/vector:67,
2023-06-30T09:13:16,068                    from src/genotypedistribution.h:4,
2023-06-30T09:13:16,068                    from src/genotypedistribution.cpp:5:
2023-06-30T09:13:16,068   /usr/include/c++/10/bits/stl_vector.h: In constructor ‘GenotypeDistribution::GenotypeDistribution(double, double, double)’:
2023-06-30T09:13:16,068   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-06-30T09:13:16,068    1198 |    _M_realloc_insert(end(), __x);
2023-06-30T09:13:16,068         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-06-30T09:13:16,069   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-06-30T09:13:16,069    1198 |    _M_realloc_insert(end(), __x);
2023-06-30T09:13:16,069         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-06-30T09:13:16,070   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-06-30T09:13:16,070    1198 |    _M_realloc_insert(end(), __x);
2023-06-30T09:13:16,070         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-06-30T09:13:16,242   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotypedptable.cpp -o build/temp.linux-armv7l-cpython-39/src/genotypedptable.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:18,274   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::clear_forward_table()’:
2023-06-30T09:13:18,275   src/genotypedptable.cpp:61:12: warning: unused variable ‘column_count’ [-Wunused-variable]
2023-06-30T09:13:18,275      61 |     size_t column_count = input_column_iterator.get_column_count();
2023-06-30T09:13:18,275         |            ^~~~~~~~~~~~
2023-06-30T09:13:18,328   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_index()’:
2023-06-30T09:13:18,328   src/genotypedptable.cpp:91:18: warning: unused variable ‘transmission_configurations’ [-Wunused-variable]
2023-06-30T09:13:18,328      91 |     unsigned int transmission_configurations = pow(4, pedigree->triple_count());
2023-06-30T09:13:18,328         |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:18,331   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_backward_prob()’:
2023-06-30T09:13:18,332   src/genotypedptable.cpp:152:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-06-30T09:13:18,332     152 |         if ((k>1) && (column_index < column_count-1) && (((column_index+1)%k) != 0)) {
2023-06-30T09:13:18,332         |                       ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2023-06-30T09:13:18,335   src/genotypedptable.cpp: In member function ‘void GenotypeDPTable::compute_forward_prob()’:
2023-06-30T09:13:18,335   src/genotypedptable.cpp:178:12: warning: unused variable ‘k’ [-Wunused-variable]
2023-06-30T09:13:18,336     178 |     size_t k = (size_t)sqrt(input_column_iterator.get_column_count());
2023-06-30T09:13:18,336         |            ^
2023-06-30T09:13:22,003   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/genotyper.cpp -o build/temp.linux-armv7l-cpython-39/src/genotyper.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:24,120   In file included from /usr/include/c++/10/vector:72,
2023-06-30T09:13:24,120                    from src/columniterator.h:4,
2023-06-30T09:13:24,120                    from src/genotyper.cpp:6:
2023-06-30T09:13:24,120   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Genotype&}; _Tp = Genotype; _Alloc = std::allocator<Genotype>]’:
2023-06-30T09:13:24,120   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Genotype>::iterator’ changed in GCC 7.1
2023-06-30T09:13:24,121     426 |       vector<_Tp, _Alloc>::
2023-06-30T09:13:24,121         |       ^~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:24,313   In file included from /usr/include/c++/10/vector:67,
2023-06-30T09:13:24,313                    from src/columniterator.h:4,
2023-06-30T09:13:24,313                    from src/genotyper.cpp:6:
2023-06-30T09:13:24,314   /usr/include/c++/10/bits/stl_vector.h: In function ‘void compute_genotypes(const ReadSet&, std::vector<Genotype>*, std::vector<GenotypeDistribution>*, std::vector<unsigned int>*)’:
2023-06-30T09:13:24,314   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Genotype*, std::vector<Genotype> >’ changed in GCC 7.1
2023-06-30T09:13:24,314    1198 |    _M_realloc_insert(end(), __x);
2023-06-30T09:13:24,314         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-06-30T09:13:24,679   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/graycodes.cpp -o build/temp.linux-armv7l-cpython-39/src/graycodes.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:25,657   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/balancedcombinations.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/balancedcombinations.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:29,197   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/basictypes.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/basictypes.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:30,751   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/binomialcoefficient.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/binomialcoefficient.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:33,279   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/hapchatcolumniterator.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/hapchatcolumniterator.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:35,522   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/hapchat/hapchatcore.cpp -o build/temp.linux-armv7l-cpython-39/src/hapchat/hapchatcore.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:37,602   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’:
2023-06-30T09:13:37,602   src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable]
2023-06-30T09:13:37,602     145 |   Counter counter_columns;
2023-06-30T09:13:37,603         |           ^~~~~~~~~~~~~~~
2023-06-30T09:13:37,612   src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector<std::vector<Entry> >&, const Pointer&, const bool&)’:
2023-06-30T09:13:37,612   src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:37,612     208 |   return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1)));
2023-06-30T09:13:37,612         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:13:37,748   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector<bool>&, std::vector<bool>&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’:
2023-06-30T09:13:37,749   src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable]
2023-06-30T09:13:37,749     939 |    int old_k = k_j[input_pointer];
2023-06-30T09:13:37,749         |        ^~~~~
2023-06-30T09:13:37,766   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::bitset<64> >&, std::vector<unsigned int>&, const bool&)’:
2023-06-30T09:13:37,767   src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:37,767    1114 |          (colJ[j].get_read_id() != -1) &&
2023-06-30T09:13:37,767         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:13:37,767   src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:37,767    1115 |          (colQ[i].get_read_id() != -1)) {
2023-06-30T09:13:37,767         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:13:37,769   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’:
2023-06-30T09:13:37,769   src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:37,769    1159 |   while(cov < column.size() && column[cov].get_read_id() != -1) {
2023-06-30T09:13:37,769         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:13:37,774   src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’:
2023-06-30T09:13:37,774   src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:37,775    1294 |          (colJ[j].get_read_id() != -1) &&
2023-06-30T09:13:37,775         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:13:37,775   src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:37,775    1295 |          (colQ[i].get_read_id() != -1)) {
2023-06-30T09:13:37,775         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:13:37,777   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector<std::vector<Entry> >&, std::vector<unsigned int>&, std::vector<unsigned int>&, std::vector<Cost>&, const Pointer&, const Column&, std::vector<bool>&, const Counter&)’:
2023-06-30T09:13:37,778   src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:37,778    1350 |   if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1)
2023-06-30T09:13:37,778         |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:13:38,770   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/indexset.cpp -o build/temp.linux-armv7l-cpython-39/src/indexset.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:40,290   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/multinomial.cpp -o build/temp.linux-armv7l-cpython-39/src/multinomial.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:41,454   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/pedigree.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigree.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:42,787   In file included from /usr/include/c++/10/cassert:44,
2023-06-30T09:13:42,787                    from src/pedigree.cpp:4:
2023-06-30T09:13:42,787   src/pedigree.cpp: In member function ‘void Pedigree::addIndividual(unsigned int, std::vector<Genotype*>, std::vector<PhredGenotypeLikelihoods*>)’:
2023-06-30T09:13:42,787   src/pedigree.cpp:32:26: warning: comparison of integer expressions of different signedness: ‘std::vector<Genotype*>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-06-30T09:13:42,787      32 |  assert(genotypes.size() == variant_count);
2023-06-30T09:13:42,788         |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2023-06-30T09:13:42,788   src/pedigree.cpp:33:37: warning: comparison of integer expressions of different signedness: ‘std::vector<PhredGenotypeLikelihoods*>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-06-30T09:13:42,788      33 |  assert(genotype_likelihoods.size() == variant_count);
2023-06-30T09:13:42,788         |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
2023-06-30T09:13:42,797   src/pedigree.cpp: In member function ‘const Genotype* Pedigree::get_genotype_by_id(unsigned int, unsigned int) const’:
2023-06-30T09:13:42,797   src/pedigree.cpp:70:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
2023-06-30T09:13:42,797      70 |  assert(variant_index < variant_count);
2023-06-30T09:13:42,797         |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2023-06-30T09:13:42,797   src/pedigree.cpp: In member function ‘const PhredGenotypeLikelihoods* Pedigree::get_genotype_likelihoods_by_id(unsigned int, unsigned int) const’:
2023-06-30T09:13:42,798   src/pedigree.cpp:81:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
2023-06-30T09:13:42,798      81 |  assert(variant_index < variant_count);
2023-06-30T09:13:42,798         |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
2023-06-30T09:13:42,810   src/pedigree.cpp: In member function ‘std::string Pedigree::toString() const’:
2023-06-30T09:13:42,810   src/pedigree.cpp:112:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
2023-06-30T09:13:42,810     112 |   for (size_t j=0; j<variant_count; ++j) {
2023-06-30T09:13:42,810         |                    ~^~~~~~~~~~~~~~
2023-06-30T09:13:45,009   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/pedigreecolumncostcomputer.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigreecolumncostcomputer.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:46,637   src/pedigreecolumncostcomputer.cpp: In constructor ‘PedigreeColumnCostComputer::PedigreeColumnCostComputer(const std::vector<const Entry*>&, size_t, const std::vector<unsigned int>&, const Pedigree*, const PedigreePartitions&, bool)’:
2023-06-30T09:13:46,637   src/pedigreecolumncostcomputer.cpp:25:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:13:46,638      25 |  for (unsigned int i = 0; i < (1<<pedigree_partitions.count()); ++i) {
2023-06-30T09:13:46,638         |                           ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:46,674   src/pedigreecolumncostcomputer.cpp: In member function ‘std::vector<PedigreeColumnCostComputer::phased_variant_t> PedigreeColumnCostComputer::get_alleles()’:
2023-06-30T09:13:46,675   src/pedigreecolumncostcomputer.cpp:119:15: warning: unused variable ‘second_best_cost’ [-Wunused-variable]
2023-06-30T09:13:46,675     119 |  unsigned int second_best_cost = numeric_limits < unsigned int >::max();
2023-06-30T09:13:46,675         |               ^~~~~~~~~~~~~~~~
2023-06-30T09:13:47,765   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/pedigreedptable.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigreedptable.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:53,833   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/pedigreepartitions.cpp -o build/temp.linux-armv7l-cpython-39/src/pedigreepartitions.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:55,670   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/phredgenotypelikelihoods.cpp -o build/temp.linux-armv7l-cpython-39/src/phredgenotypelikelihoods.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:13:57,235   In file included from /usr/include/c++/10/vector:72,
2023-06-30T09:13:57,235                    from src/genotype.h:4,
2023-06-30T09:13:57,235                    from src/phredgenotypelikelihoods.h:5,
2023-06-30T09:13:57,235                    from src/phredgenotypelikelihoods.cpp:4:
2023-06-30T09:13:57,235   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Genotype}; _Tp = Genotype; _Alloc = std::allocator<Genotype>]’:
2023-06-30T09:13:57,235   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Genotype>::iterator’ changed in GCC 7.1
2023-06-30T09:13:57,236     426 |       vector<_Tp, _Alloc>::
2023-06-30T09:13:57,236         |       ^~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:57,268   /usr/include/c++/10/bits/vector.tcc: In member function ‘void PhredGenotypeLikelihoods::get_genotypes(std::vector<Genotype>&) const’:
2023-06-30T09:13:57,268   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Genotype*, std::vector<Genotype> >’ changed in GCC 7.1
2023-06-30T09:13:57,269     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-06-30T09:13:57,269         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:13:57,399   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/read.cpp -o build/temp.linux-armv7l-cpython-39/src/read.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:14:00,340   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/readset.cpp -o build/temp.linux-armv7l-cpython-39/src/readset.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:14:04,732   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c src/transitionprobabilitycomputer.cpp -o build/temp.linux-armv7l-cpython-39/src/transitionprobabilitycomputer.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:14:07,169   In file included from /usr/include/c++/10/vector:72,
2023-06-30T09:14:07,169                    from src/vector2d.h:5,
2023-06-30T09:14:07,169                    from src/transitionprobabilitycomputer.h:5,
2023-06-30T09:14:07,169                    from src/transitionprobabilitycomputer.cpp:1:
2023-06-30T09:14:07,169   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long double}; _Tp = long double; _Alloc = std::allocator<long double>]’:
2023-06-30T09:14:07,169   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long double, std::allocator<long double> >::iterator’ changed in GCC 7.1
2023-06-30T09:14:07,170     426 |       vector<_Tp, _Alloc>::
2023-06-30T09:14:07,170         |       ^~~~~~~~~~~~~~~~~~~
2023-06-30T09:14:07,211   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Genotype&}; _Tp = Genotype; _Alloc = std::allocator<Genotype>]’:
2023-06-30T09:14:07,211   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Genotype>::iterator’ changed in GCC 7.1
2023-06-30T09:14:07,685   /usr/include/c++/10/bits/vector.tcc: In constructor ‘TransitionProbabilityComputer::TransitionProbabilityComputer(size_t, unsigned int, const Pedigree*, const std::vector<PedigreePartitions*>&)’:
2023-06-30T09:14:07,685   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double, std::allocator<long double> > >’ changed in GCC 7.1
2023-06-30T09:14:07,685     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2023-06-30T09:14:07,685         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-06-30T09:14:07,687   In file included from /usr/include/c++/10/vector:67,
2023-06-30T09:14:07,687                    from src/vector2d.h:5,
2023-06-30T09:14:07,687                    from src/transitionprobabilitycomputer.h:5,
2023-06-30T09:14:07,687                    from src/transitionprobabilitycomputer.cpp:1:
2023-06-30T09:14:07,687   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Genotype*, std::vector<Genotype> >’ changed in GCC 7.1
2023-06-30T09:14:07,687    1198 |    _M_realloc_insert(end(), __x);
2023-06-30T09:14:07,687         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-06-30T09:14:08,430   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -UNDEBUG -Isrc/ -I/usr/include/python3.9 -c whatshap/core.cpp -o build/temp.linux-armv7l-cpython-39/whatshap/core.o -std=c++11 -Werror=return-type -Werror=narrowing
2023-06-30T09:14:11,012   In file included from whatshap/core.cpp:847:
2023-06-30T09:14:11,013   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::run_core()’:
2023-06-30T09:14:11,013   src/hapchat/hapchatcore.cpp:145:11: warning: variable ‘counter_columns’ set but not used [-Wunused-but-set-variable]
2023-06-30T09:14:11,013     145 |   Counter counter_columns;
2023-06-30T09:14:11,013         |           ^~~~~~~~~~~~~~~
2023-06-30T09:14:11,022   src/hapchat/hapchatcore.cpp: In member function ‘bool HapChatCore::check_end(HapChatColumnIterator, const std::vector<std::vector<Entry> >&, const Pointer&, const bool&)’:
2023-06-30T09:14:11,023   src/hapchat/hapchatcore.cpp:208:74: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:14:11,023     208 |   return (!re_run && (hap.is_ended() && (input[pointer][0].get_read_id() == -1)));
2023-06-30T09:14:11,023         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:14:11,161   In file included from whatshap/core.cpp:847:
2023-06-30T09:14:11,161   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::dp(const constants_t&, std::vector<bool>&, std::vector<bool>&, Counter&, Cost&, Counter&, Counter&, Counter&, Counter&, HapChatColumnIterator)’:
2023-06-30T09:14:11,161   src/hapchat/hapchatcore.cpp:939:8: warning: unused variable ‘old_k’ [-Wunused-variable]
2023-06-30T09:14:11,161     939 |    int old_k = k_j[input_pointer];
2023-06-30T09:14:11,161         |        ^~~~~
2023-06-30T09:14:11,179   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::intersect(const Column&, const Column&, const Pointer&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::bitset<64> >&, std::vector<unsigned int>&, const bool&)’:
2023-06-30T09:14:11,179   src/hapchat/hapchatcore.cpp:1114:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:14:11,179    1114 |          (colJ[j].get_read_id() != -1) &&
2023-06-30T09:14:11,179         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:14:11,179   src/hapchat/hapchatcore.cpp:1115:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:14:11,180    1115 |          (colQ[i].get_read_id() != -1)) {
2023-06-30T09:14:11,180         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:14:11,181   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::represent_column(const Column&, BitColumn&, Counter&, BitColumn&, Counter&)’:
2023-06-30T09:14:11,181   src/hapchat/hapchatcore.cpp:1159:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:14:11,182    1159 |   while(cov < column.size() && column[cov].get_read_id() != -1) {
2023-06-30T09:14:11,182         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:14:11,186   src/hapchat/hapchatcore.cpp: In member function ‘int HapChatCore::compute_active_common(const Column&, const Column&, unsigned int&)’:
2023-06-30T09:14:11,186   src/hapchat/hapchatcore.cpp:1294:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:14:11,186    1294 |          (colJ[j].get_read_id() != -1) &&
2023-06-30T09:14:11,187         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:14:11,187   src/hapchat/hapchatcore.cpp:1295:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:14:11,187    1295 |          (colQ[i].get_read_id() != -1)) {
2023-06-30T09:14:11,187         |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:14:11,189   src/hapchat/hapchatcore.cpp: In member function ‘void HapChatCore::insert_col_and_update(std::vector<std::vector<Entry> >&, std::vector<unsigned int>&, std::vector<unsigned int>&, std::vector<Cost>&, const Pointer&, const Column&, std::vector<bool>&, const Counter&)’:
2023-06-30T09:14:11,190   src/hapchat/hapchatcore.cpp:1350:67: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-06-30T09:14:11,190    1350 |   if(i < input[pointer].size() && input[pointer][i].get_read_id() != -1)
2023-06-30T09:14:11,190         |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-06-30T09:14:11,321   In file included from src/polyphase/haplothreader.h:4,
2023-06-30T09:14:11,321                    from whatshap/core.cpp:853:
2023-06-30T09:14:11,321   src/polyphase/tuple.h: At global scope:
2023-06-30T09:14:11,321   src/polyphase/tuple.h:26:50: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,321      26 |         31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35,
2023-06-30T09:14:11,322         |                                             ~~~~~^~~~~
2023-06-30T09:14:11,322   src/polyphase/tuple.h:27:14: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,322      27 |         31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55};
2023-06-30T09:14:11,322         |         ~~~~~^~~~~
2023-06-30T09:14:11,322   src/polyphase/tuple.h:27:26: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,322      27 |         31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55};
2023-06-30T09:14:11,322         |                     ~~~~~^~~~~
2023-06-30T09:14:11,323   src/polyphase/tuple.h:27:38: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,323      27 |         31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55};
2023-06-30T09:14:11,323         |                                 ~~~~~^~~~~
2023-06-30T09:14:11,323   src/polyphase/tuple.h:27:50: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,323      27 |         31UL << 40, 31UL << 45, 31UL << 50, 31UL << 55};
2023-06-30T09:14:11,323         |                                             ~~~~~^~~~~
2023-06-30T09:14:11,323   src/polyphase/tuple.h:26:50: error: right operand of shift expression ‘(31 << 35)’ is greater than or equal to the precision 32 of the left operand [-fpermissive]
2023-06-30T09:14:11,324      26 |         31UL << 20, 31UL << 25, 31UL << 30, 31UL << 35,
2023-06-30T09:14:11,324         |                                             ~~~~~^~~~~
2023-06-30T09:14:11,356   In file included from whatshap/core.cpp:854:
2023-06-30T09:14:11,356   src/polyphase/switchflipcalculator.h:31:14: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,356      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2023-06-30T09:14:11,356         |         ~~~~~^~~~~
2023-06-30T09:14:11,357   src/polyphase/switchflipcalculator.h:31:26: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,357      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2023-06-30T09:14:11,357         |                     ~~~~~^~~~~
2023-06-30T09:14:11,357   src/polyphase/switchflipcalculator.h:31:38: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,357      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2023-06-30T09:14:11,357         |                                 ~~~~~^~~~~
2023-06-30T09:14:11,357   src/polyphase/switchflipcalculator.h:31:50: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,357      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2023-06-30T09:14:11,358         |                                             ~~~~~^~~~~
2023-06-30T09:14:11,358   src/polyphase/switchflipcalculator.h:32:14: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,358      32 |         15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60
2023-06-30T09:14:11,358         |         ~~~~~^~~~~
2023-06-30T09:14:11,358   src/polyphase/switchflipcalculator.h:32:26: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,358      32 |         15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60
2023-06-30T09:14:11,358         |                     ~~~~~^~~~~
2023-06-30T09:14:11,359   src/polyphase/switchflipcalculator.h:32:38: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,359      32 |         15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60
2023-06-30T09:14:11,359         |                                 ~~~~~^~~~~
2023-06-30T09:14:11,359   src/polyphase/switchflipcalculator.h:32:50: warning: left shift count >= width of type [-Wshift-count-overflow]
2023-06-30T09:14:11,359      32 |         15UL << 48, 15UL << 52, 15UL << 56, 15UL << 60
2023-06-30T09:14:11,359         |                                             ~~~~~^~~~~
2023-06-30T09:14:11,359   src/polyphase/switchflipcalculator.h:31:14: error: right operand of shift expression ‘(15 << 32)’ is greater than or equal to the precision 32 of the left operand [-fpermissive]
2023-06-30T09:14:11,359      31 |         15UL << 32, 15UL << 36, 15UL << 40, 15UL << 44,
2023-06-30T09:14:11,360         |         ~~~~~^~~~~
2023-06-30T09:14:11,646   whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_15PedigreeDPTable_4get_super_reads(__pyx_obj_8whatshap_4core_PedigreeDPTable*)’:
2023-06-30T09:14:11,646   whatshap/core.cpp:8960:33: warning: comparison of integer expressions of different signedness: ‘std::vector<ReadSet*>::size_type’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2023-06-30T09:14:11,646    8960 |   for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2023-06-30T09:14:11,646         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-06-30T09:14:11,907   whatshap/core.cpp: In function ‘PyObject* __pyx_pf_8whatshap_4core_11HapChatCore_6get_super_reads(__pyx_obj_8whatshap_4core_HapChatCore*)’:
2023-06-30T09:14:11,907   whatshap/core.cpp:15193:33: warning: comparison of integer expressions of different signedness: ‘std::vector<ReadSet*>::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
2023-06-30T09:14:11,907   15193 |   for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) {
2023-06-30T09:14:11,907         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-06-30T09:14:13,794   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2023-06-30T09:14:13,946   ERROR: [present-rich] Building wheel for whatshap (pyproject.toml) exited with 1
2023-06-30T09:14:13,963   [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp72v3v5ae[/]
2023-06-30T09:14:13,963   [bold magenta]cwd[/]: /tmp/pip-wheel-q_5o1427/whatshap_8debf6d62c31413da8eb50c27d61e5b2
2023-06-30T09:14:13,963   Building wheel for whatshap (pyproject.toml): finished with status 'error'
2023-06-30T09:14:13,966   ERROR: Failed building wheel for whatshap
2023-06-30T09:14:13,968 Failed to build whatshap
2023-06-30T09:14:13,969 ERROR: Failed to build one or more wheels
2023-06-30T09:14:13,970 Exception information:
2023-06-30T09:14:13,970 Traceback (most recent call last):
2023-06-30T09:14:13,970   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper
2023-06-30T09:14:13,970     status = run_func(*args)
2023-06-30T09:14:13,970   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-06-30T09:14:13,970     return func(self, options, args)
2023-06-30T09:14:13,970   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 178, in run
2023-06-30T09:14:13,970     raise CommandError("Failed to build one or more wheels")
2023-06-30T09:14:13,970 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2023-06-30T09:14:13,974 Removed build tracker: '/tmp/pip-build-tracker-kfjeipks'