2023-06-30T14:44:50,323 Created temporary directory: /tmp/pip-build-tracker-4gqf0m45 2023-06-30T14:44:50,326 Initialized build tracking at /tmp/pip-build-tracker-4gqf0m45 2023-06-30T14:44:50,327 Created build tracker: /tmp/pip-build-tracker-4gqf0m45 2023-06-30T14:44:50,327 Entered build tracker: /tmp/pip-build-tracker-4gqf0m45 2023-06-30T14:44:50,328 Created temporary directory: /tmp/pip-wheel-i5eooj6h 2023-06-30T14:44:50,336 Created temporary directory: /tmp/pip-ephem-wheel-cache-4hozfiju 2023-06-30T14:44:50,388 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-06-30T14:44:50,396 2 location(s) to search for versions of pymlst: 2023-06-30T14:44:50,396 * https://pypi.org/simple/pymlst/ 2023-06-30T14:44:50,396 * https://www.piwheels.org/simple/pymlst/ 2023-06-30T14:44:50,397 Fetching project page and analyzing links: https://pypi.org/simple/pymlst/ 2023-06-30T14:44:50,398 Getting page https://pypi.org/simple/pymlst/ 2023-06-30T14:44:50,403 Found index url https://pypi.org/simple/ 2023-06-30T14:44:50,602 Fetched page https://pypi.org/simple/pymlst/ as application/vnd.pypi.simple.v1+json 2023-06-30T14:44:50,608 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/c9/58/b20aff870603ed350a23e651f3051764f84411f47dce6a04fb7005da52a4/PyMLST-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-06-30T14:44:50,609 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/ee/ae/cb1ae640761c8bd7001800973a72b475552793dd99b8caa5e078f29a0faa/PyMLST-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-06-30T14:44:50,609 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/46/2d/d32aed32e3a77ae21226a144f0ca31b040907cfa65c6b0de4c95a49768bf/PyMLST-2.1.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-06-30T14:44:50,610 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/a1/ac/76b9312b65e1f7f7638b6eb46cecb9341c7d55a34a9796b96ce22366522f/PyMLST-2.1.2-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-06-30T14:44:50,611 Found link https://files.pythonhosted.org/packages/b8/96/cca409adee7a3c61adc124ac12da584545819427f10487a01d84eadc71c5/PyMLST-2.1.2.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.2 2023-06-30T14:44:50,612 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/79/fa/b291f5dbc74c78c7ff6f0e4225d1199d10d3e750c4273935f83327fbfedd/PyMLST-2.1.3-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-06-30T14:44:50,614 Found link https://files.pythonhosted.org/packages/f1/ee/77f0663a2221d7e44b07a14f74c6d3279c19640338e84f2c39ed984bb166/PyMLST-2.1.3.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.3 2023-06-30T14:44:50,615 Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/58/2c/9087cc4a524d0ebf9a2104e229422266299f5e37d01d09f75d10288d7162/PyMLST-2.1.4-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-06-30T14:44:50,616 Found link https://files.pythonhosted.org/packages/58/54/4ddd2e96629a17bf60e728e48e53e47f0720710db9b1416b3d34716f9824/PyMLST-2.1.4.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.4 2023-06-30T14:44:50,617 Fetching project page and analyzing links: https://www.piwheels.org/simple/pymlst/ 2023-06-30T14:44:50,618 Getting page https://www.piwheels.org/simple/pymlst/ 2023-06-30T14:44:50,620 Found index url https://www.piwheels.org/simple/ 2023-06-30T14:44:50,843 Fetched page https://www.piwheels.org/simple/pymlst/ as text/html 2023-06-30T14:44:50,847 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.3-py3-none-any.whl#sha256=f2069f50ecc8c8b203e9257f5c011010e50959605a806e70142dfde35d0e77eb (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-06-30T14:44:50,848 Skipping link: No binaries permitted for pymlst: https://www.piwheels.org/simple/pymlst/PyMLST-2.1.2-py3-none-any.whl#sha256=23fec25be78d92f9683e799227d86c9a19ca909d5f9ecae088c1d70ef372395b (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0) 2023-06-30T14:44:50,848 Skipping link: not a file: https://www.piwheels.org/simple/pymlst/ 2023-06-30T14:44:50,849 Skipping link: not a file: https://pypi.org/simple/pymlst/ 2023-06-30T14:44:50,882 Given no hashes to check 1 links for project 'pymlst': discarding no candidates 2023-06-30T14:44:50,912 Collecting pymlst==2.1.4 2023-06-30T14:44:50,917 Created temporary directory: /tmp/pip-unpack-mbsdqa8l 2023-06-30T14:44:51,127 Downloading PyMLST-2.1.4.tar.gz (41 kB) 2023-06-30T14:44:51,445 Added pymlst==2.1.4 from https://files.pythonhosted.org/packages/58/54/4ddd2e96629a17bf60e728e48e53e47f0720710db9b1416b3d34716f9824/PyMLST-2.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-4gqf0m45' 2023-06-30T14:44:51,448 Running setup.py (path:/tmp/pip-wheel-i5eooj6h/pymlst_b9f6785e77994ed3b6a3c7f11866b9fe/setup.py) egg_info for package pymlst 2023-06-30T14:44:51,450 Created temporary directory: /tmp/pip-pip-egg-info-ahlyf0cs 2023-06-30T14:44:51,450 Preparing metadata (setup.py): started 2023-06-30T14:44:51,452 Running command python setup.py egg_info 2023-06-30T14:44:53,469 running egg_info 2023-06-30T14:44:53,471 creating /tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info 2023-06-30T14:44:53,537 writing /tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info/PKG-INFO 2023-06-30T14:44:53,543 writing dependency_links to /tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info/dependency_links.txt 2023-06-30T14:44:53,547 writing entry points to /tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info/entry_points.txt 2023-06-30T14:44:53,549 writing requirements to /tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info/requires.txt 2023-06-30T14:44:53,552 writing top-level names to /tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info/top_level.txt 2023-06-30T14:44:53,554 writing manifest file '/tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info/SOURCES.txt' 2023-06-30T14:44:53,768 reading manifest file '/tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info/SOURCES.txt' 2023-06-30T14:44:53,772 reading manifest template 'MANIFEST.in' 2023-06-30T14:44:53,786 writing manifest file '/tmp/pip-pip-egg-info-ahlyf0cs/PyMLST.egg-info/SOURCES.txt' 2023-06-30T14:44:53,788 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-06-30T14:44:53,789 !! 2023-06-30T14:44:53,789 ******************************************************************************** 2023-06-30T14:44:53,790 Usage of dash-separated 'description-file' will not be supported in future 2023-06-30T14:44:53,790 versions. Please use the underscore name 'description_file' instead. 2023-06-30T14:44:53,791 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-06-30T14:44:53,792 or your builds will no longer be supported. 2023-06-30T14:44:53,793 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-06-30T14:44:53,793 ******************************************************************************** 2023-06-30T14:44:53,794 !! 2023-06-30T14:44:53,794 opt = self.warn_dash_deprecation(opt, section) 2023-06-30T14:44:53,795 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-06-30T14:44:53,795 !! 2023-06-30T14:44:53,796 ******************************************************************************** 2023-06-30T14:44:53,797 Requirements should be satisfied by a PEP 517 installer. 2023-06-30T14:44:53,797 If you are using pip, you can try `pip install --use-pep517`. 2023-06-30T14:44:53,798 ******************************************************************************** 2023-06-30T14:44:53,799 !! 2023-06-30T14:44:53,799 dist.fetch_build_eggs(dist.setup_requires) 2023-06-30T14:44:53,800 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-06-30T14:44:53,800 !! 2023-06-30T14:44:53,801 ******************************************************************************** 2023-06-30T14:44:53,801 Usage of dash-separated 'description-file' will not be supported in future 2023-06-30T14:44:53,802 versions. Please use the underscore name 'description_file' instead. 2023-06-30T14:44:53,803 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-06-30T14:44:53,803 or your builds will no longer be supported. 2023-06-30T14:44:53,804 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-06-30T14:44:53,804 ******************************************************************************** 2023-06-30T14:44:53,805 !! 2023-06-30T14:44:53,806 opt = self.warn_dash_deprecation(opt, section) 2023-06-30T14:44:53,928 Preparing metadata (setup.py): finished with status 'done' 2023-06-30T14:44:53,944 Source in /tmp/pip-wheel-i5eooj6h/pymlst_b9f6785e77994ed3b6a3c7f11866b9fe has version 2.1.4, which satisfies requirement pymlst==2.1.4 from https://files.pythonhosted.org/packages/58/54/4ddd2e96629a17bf60e728e48e53e47f0720710db9b1416b3d34716f9824/PyMLST-2.1.4.tar.gz 2023-06-30T14:44:53,946 Removed pymlst==2.1.4 from https://files.pythonhosted.org/packages/58/54/4ddd2e96629a17bf60e728e48e53e47f0720710db9b1416b3d34716f9824/PyMLST-2.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-4gqf0m45' 2023-06-30T14:44:53,964 Created temporary directory: /tmp/pip-unpack-sva2v47x 2023-06-30T14:44:53,965 Building wheels for collected packages: pymlst 2023-06-30T14:44:53,974 Created temporary directory: /tmp/pip-wheel-ou25tbdy 2023-06-30T14:44:53,974 Building wheel for pymlst (setup.py): started 2023-06-30T14:44:53,976 Destination directory: /tmp/pip-wheel-ou25tbdy 2023-06-30T14:44:53,977 Running command python setup.py bdist_wheel 2023-06-30T14:44:55,148 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-06-30T14:44:55,149 !! 2023-06-30T14:44:55,150 ******************************************************************************** 2023-06-30T14:44:55,150 Usage of dash-separated 'description-file' will not be supported in future 2023-06-30T14:44:55,151 versions. Please use the underscore name 'description_file' instead. 2023-06-30T14:44:55,151 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-06-30T14:44:55,152 or your builds will no longer be supported. 2023-06-30T14:44:55,152 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-06-30T14:44:55,152 ******************************************************************************** 2023-06-30T14:44:55,153 !! 2023-06-30T14:44:55,153 opt = self.warn_dash_deprecation(opt, section) 2023-06-30T14:44:55,662 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-06-30T14:44:55,662 !! 2023-06-30T14:44:55,663 ******************************************************************************** 2023-06-30T14:44:55,663 Requirements should be satisfied by a PEP 517 installer. 2023-06-30T14:44:55,664 If you are using pip, you can try `pip install --use-pep517`. 2023-06-30T14:44:55,664 ******************************************************************************** 2023-06-30T14:44:55,664 !! 2023-06-30T14:44:55,665 dist.fetch_build_eggs(dist.setup_requires) 2023-06-30T14:44:55,901 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-06-30T14:44:55,902 !! 2023-06-30T14:44:55,902 ******************************************************************************** 2023-06-30T14:44:55,903 Usage of dash-separated 'description-file' will not be supported in future 2023-06-30T14:44:55,903 versions. Please use the underscore name 'description_file' instead. 2023-06-30T14:44:55,904 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-06-30T14:44:55,904 or your builds will no longer be supported. 2023-06-30T14:44:55,905 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-06-30T14:44:55,905 ******************************************************************************** 2023-06-30T14:44:55,906 !! 2023-06-30T14:44:55,906 opt = self.warn_dash_deprecation(opt, section) 2023-06-30T14:44:56,093 running bdist_wheel 2023-06-30T14:44:56,859 running build 2023-06-30T14:44:56,859 running build_py 2023-06-30T14:44:56,932 creating build 2023-06-30T14:44:56,933 creating build/lib 2023-06-30T14:44:56,935 creating build/lib/pymlst 2023-06-30T14:44:56,937 copying pymlst/cmd.py -> build/lib/pymlst 2023-06-30T14:44:56,942 copying pymlst/version.py -> build/lib/pymlst 2023-06-30T14:44:56,945 copying pymlst/config.py -> build/lib/pymlst 2023-06-30T14:44:56,948 copying pymlst/__init__.py -> build/lib/pymlst 2023-06-30T14:44:56,954 creating build/lib/pymlst/wg 2023-06-30T14:44:56,956 copying pymlst/wg/core.py -> build/lib/pymlst/wg 2023-06-30T14:44:56,962 copying pymlst/wg/extractors.py -> build/lib/pymlst/wg 2023-06-30T14:44:56,967 copying pymlst/wg/model.py -> build/lib/pymlst/wg 2023-06-30T14:44:56,972 copying pymlst/wg/__init__.py -> build/lib/pymlst/wg 2023-06-30T14:44:56,978 creating build/lib/pymlst/common 2023-06-30T14:44:56,980 copying pymlst/common/web.py -> build/lib/pymlst/common 2023-06-30T14:44:56,986 copying pymlst/common/blat.py -> build/lib/pymlst/common 2023-06-30T14:44:56,991 copying pymlst/common/psl.py -> build/lib/pymlst/common 2023-06-30T14:44:56,996 copying pymlst/common/exceptions.py -> build/lib/pymlst/common 2023-06-30T14:44:57,000 copying pymlst/common/kma.py -> build/lib/pymlst/common 2023-06-30T14:44:57,004 copying pymlst/common/utils.py -> build/lib/pymlst/common 2023-06-30T14:44:57,007 copying pymlst/common/__init__.py -> build/lib/pymlst/common 2023-06-30T14:44:57,010 copying pymlst/common/mafft.py -> build/lib/pymlst/common 2023-06-30T14:44:57,014 copying pymlst/common/flag.py -> build/lib/pymlst/common 2023-06-30T14:44:57,020 creating build/lib/pymlst/cla 2023-06-30T14:44:57,022 copying pymlst/cla/core.py -> build/lib/pymlst/cla 2023-06-30T14:44:57,028 copying pymlst/cla/model.py -> build/lib/pymlst/cla 2023-06-30T14:44:57,033 copying pymlst/cla/__init__.py -> build/lib/pymlst/cla 2023-06-30T14:44:57,039 creating build/lib/pymlst/wg/commands 2023-06-30T14:44:57,042 copying pymlst/wg/commands/msa.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,047 copying pymlst/wg/commands/sequence.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,051 copying pymlst/wg/commands/add.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,055 copying pymlst/wg/commands/recombinaison.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,060 copying pymlst/wg/commands/distance.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,064 copying pymlst/wg/commands/stats.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,069 copying pymlst/wg/commands/mlst.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,073 copying pymlst/wg/commands/subgraph.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,077 copying pymlst/wg/commands/add2.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,082 copying pymlst/wg/commands/gene.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,086 copying pymlst/wg/commands/import.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,090 copying pymlst/wg/commands/strain.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,095 copying pymlst/wg/commands/__init__.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,098 copying pymlst/wg/commands/create.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,103 copying pymlst/wg/commands/remove.py -> build/lib/pymlst/wg/commands 2023-06-30T14:44:57,108 creating build/lib/pymlst/common/commands 2023-06-30T14:44:57,111 copying pymlst/common/commands/configure.py -> build/lib/pymlst/common/commands 2023-06-30T14:44:57,116 copying pymlst/common/commands/__init__.py -> build/lib/pymlst/common/commands 2023-06-30T14:44:57,121 creating build/lib/pymlst/cla/commands 2023-06-30T14:44:57,124 copying pymlst/cla/commands/search.py -> build/lib/pymlst/cla/commands 2023-06-30T14:44:57,129 copying pymlst/cla/commands/search2.py -> build/lib/pymlst/cla/commands 2023-06-30T14:44:57,133 copying pymlst/cla/commands/import.py -> build/lib/pymlst/cla/commands 2023-06-30T14:44:57,138 copying pymlst/cla/commands/__init__.py -> build/lib/pymlst/cla/commands 2023-06-30T14:44:57,141 copying pymlst/cla/commands/create.py -> build/lib/pymlst/cla/commands 2023-06-30T14:44:57,146 copying pymlst/cla/commands/remove.py -> build/lib/pymlst/cla/commands 2023-06-30T14:44:57,149 running egg_info 2023-06-30T14:44:57,281 writing PyMLST.egg-info/PKG-INFO 2023-06-30T14:44:57,286 writing dependency_links to PyMLST.egg-info/dependency_links.txt 2023-06-30T14:44:57,291 writing entry points to PyMLST.egg-info/entry_points.txt 2023-06-30T14:44:57,294 writing requirements to PyMLST.egg-info/requires.txt 2023-06-30T14:44:57,297 writing top-level names to PyMLST.egg-info/top_level.txt 2023-06-30T14:44:57,378 reading manifest file 'PyMLST.egg-info/SOURCES.txt' 2023-06-30T14:44:57,387 reading manifest template 'MANIFEST.in' 2023-06-30T14:44:57,402 writing manifest file 'PyMLST.egg-info/SOURCES.txt' 2023-06-30T14:44:57,409 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pymlst.data.alembic' is absent from the `packages` configuration. 2023-06-30T14:44:57,409 !! 2023-06-30T14:44:57,410 ******************************************************************************** 2023-06-30T14:44:57,410 ############################ 2023-06-30T14:44:57,411 # Package would be ignored # 2023-06-30T14:44:57,411 ############################ 2023-06-30T14:44:57,412 Python recognizes 'pymlst.data.alembic' as an importable package[^1], 2023-06-30T14:44:57,412 but it is absent from setuptools' `packages` configuration. 2023-06-30T14:44:57,412 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-30T14:44:57,413 package, please make sure that 'pymlst.data.alembic' is explicitly added 2023-06-30T14:44:57,413 to the `packages` configuration field. 2023-06-30T14:44:57,414 Alternatively, you can also rely on setuptools' discovery methods 2023-06-30T14:44:57,414 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-30T14:44:57,414 instead of `find_packages(...)`/`find:`). 2023-06-30T14:44:57,415 You can read more about "package discovery" on setuptools documentation page: 2023-06-30T14:44:57,415 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-30T14:44:57,416 If you don't want 'pymlst.data.alembic' to be distributed and are 2023-06-30T14:44:57,416 already explicitly excluding 'pymlst.data.alembic' via 2023-06-30T14:44:57,417 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-30T14:44:57,417 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-30T14:44:57,417 combination with a more fine grained `package-data` configuration. 2023-06-30T14:44:57,418 You can read more about "package data files" on setuptools documentation page: 2023-06-30T14:44:57,419 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-30T14:44:57,419 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-30T14:44:57,420 even if it does not contain any `.py` files. 2023-06-30T14:44:57,420 On the other hand, currently there is no concept of package data 2023-06-30T14:44:57,420 directory, all directories are treated like packages. 2023-06-30T14:44:57,421 ******************************************************************************** 2023-06-30T14:44:57,421 !! 2023-06-30T14:44:57,422 check.warn(importable) 2023-06-30T14:44:57,422 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pymlst.data.alembic.cla' is absent from the `packages` configuration. 2023-06-30T14:44:57,423 !! 2023-06-30T14:44:57,423 ******************************************************************************** 2023-06-30T14:44:57,424 ############################ 2023-06-30T14:44:57,424 # Package would be ignored # 2023-06-30T14:44:57,424 ############################ 2023-06-30T14:44:57,425 Python recognizes 'pymlst.data.alembic.cla' as an importable package[^1], 2023-06-30T14:44:57,425 but it is absent from setuptools' `packages` configuration. 2023-06-30T14:44:57,426 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-30T14:44:57,426 package, please make sure that 'pymlst.data.alembic.cla' is explicitly added 2023-06-30T14:44:57,426 to the `packages` configuration field. 2023-06-30T14:44:57,427 Alternatively, you can also rely on setuptools' discovery methods 2023-06-30T14:44:57,427 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-30T14:44:57,428 instead of `find_packages(...)`/`find:`). 2023-06-30T14:44:57,428 You can read more about "package discovery" on setuptools documentation page: 2023-06-30T14:44:57,429 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-30T14:44:57,429 If you don't want 'pymlst.data.alembic.cla' to be distributed and are 2023-06-30T14:44:57,430 already explicitly excluding 'pymlst.data.alembic.cla' via 2023-06-30T14:44:57,430 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-30T14:44:57,430 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-30T14:44:57,431 combination with a more fine grained `package-data` configuration. 2023-06-30T14:44:57,432 You can read more about "package data files" on setuptools documentation page: 2023-06-30T14:44:57,432 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-30T14:44:57,433 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-30T14:44:57,433 even if it does not contain any `.py` files. 2023-06-30T14:44:57,434 On the other hand, currently there is no concept of package data 2023-06-30T14:44:57,434 directory, all directories are treated like packages. 2023-06-30T14:44:57,434 ******************************************************************************** 2023-06-30T14:44:57,435 !! 2023-06-30T14:44:57,435 check.warn(importable) 2023-06-30T14:44:57,436 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pymlst.data.alembic.cla.versions' is absent from the `packages` configuration. 2023-06-30T14:44:57,436 !! 2023-06-30T14:44:57,437 ******************************************************************************** 2023-06-30T14:44:57,437 ############################ 2023-06-30T14:44:57,438 # Package would be ignored # 2023-06-30T14:44:57,438 ############################ 2023-06-30T14:44:57,438 Python recognizes 'pymlst.data.alembic.cla.versions' as an importable package[^1], 2023-06-30T14:44:57,439 but it is absent from setuptools' `packages` configuration. 2023-06-30T14:44:57,439 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-30T14:44:57,440 package, please make sure that 'pymlst.data.alembic.cla.versions' is explicitly added 2023-06-30T14:44:57,440 to the `packages` configuration field. 2023-06-30T14:44:57,441 Alternatively, you can also rely on setuptools' discovery methods 2023-06-30T14:44:57,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-30T14:44:57,442 instead of `find_packages(...)`/`find:`). 2023-06-30T14:44:57,442 You can read more about "package discovery" on setuptools documentation page: 2023-06-30T14:44:57,443 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-30T14:44:57,444 If you don't want 'pymlst.data.alembic.cla.versions' to be distributed and are 2023-06-30T14:44:57,444 already explicitly excluding 'pymlst.data.alembic.cla.versions' via 2023-06-30T14:44:57,444 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-30T14:44:57,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-30T14:44:57,445 combination with a more fine grained `package-data` configuration. 2023-06-30T14:44:57,446 You can read more about "package data files" on setuptools documentation page: 2023-06-30T14:44:57,446 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-30T14:44:57,447 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-30T14:44:57,448 even if it does not contain any `.py` files. 2023-06-30T14:44:57,448 On the other hand, currently there is no concept of package data 2023-06-30T14:44:57,448 directory, all directories are treated like packages. 2023-06-30T14:44:57,448 ******************************************************************************** 2023-06-30T14:44:57,449 !! 2023-06-30T14:44:57,449 check.warn(importable) 2023-06-30T14:44:57,450 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pymlst.data.alembic.wg' is absent from the `packages` configuration. 2023-06-30T14:44:57,450 !! 2023-06-30T14:44:57,451 ******************************************************************************** 2023-06-30T14:44:57,451 ############################ 2023-06-30T14:44:57,452 # Package would be ignored # 2023-06-30T14:44:57,452 ############################ 2023-06-30T14:44:57,452 Python recognizes 'pymlst.data.alembic.wg' as an importable package[^1], 2023-06-30T14:44:57,453 but it is absent from setuptools' `packages` configuration. 2023-06-30T14:44:57,453 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-30T14:44:57,453 package, please make sure that 'pymlst.data.alembic.wg' is explicitly added 2023-06-30T14:44:57,454 to the `packages` configuration field. 2023-06-30T14:44:57,455 Alternatively, you can also rely on setuptools' discovery methods 2023-06-30T14:44:57,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-30T14:44:57,455 instead of `find_packages(...)`/`find:`). 2023-06-30T14:44:57,456 You can read more about "package discovery" on setuptools documentation page: 2023-06-30T14:44:57,456 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-30T14:44:57,457 If you don't want 'pymlst.data.alembic.wg' to be distributed and are 2023-06-30T14:44:57,457 already explicitly excluding 'pymlst.data.alembic.wg' via 2023-06-30T14:44:57,458 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-30T14:44:57,458 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-30T14:44:57,458 combination with a more fine grained `package-data` configuration. 2023-06-30T14:44:57,459 You can read more about "package data files" on setuptools documentation page: 2023-06-30T14:44:57,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-30T14:44:57,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-30T14:44:57,461 even if it does not contain any `.py` files. 2023-06-30T14:44:57,462 On the other hand, currently there is no concept of package data 2023-06-30T14:44:57,462 directory, all directories are treated like packages. 2023-06-30T14:44:57,462 ******************************************************************************** 2023-06-30T14:44:57,463 !! 2023-06-30T14:44:57,463 check.warn(importable) 2023-06-30T14:44:57,463 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pymlst.data.alembic.wg.versions' is absent from the `packages` configuration. 2023-06-30T14:44:57,464 !! 2023-06-30T14:44:57,464 ******************************************************************************** 2023-06-30T14:44:57,465 ############################ 2023-06-30T14:44:57,465 # Package would be ignored # 2023-06-30T14:44:57,465 ############################ 2023-06-30T14:44:57,466 Python recognizes 'pymlst.data.alembic.wg.versions' as an importable package[^1], 2023-06-30T14:44:57,466 but it is absent from setuptools' `packages` configuration. 2023-06-30T14:44:57,467 This leads to an ambiguous overall configuration. If you want to distribute this 2023-06-30T14:44:57,467 package, please make sure that 'pymlst.data.alembic.wg.versions' is explicitly added 2023-06-30T14:44:57,467 to the `packages` configuration field. 2023-06-30T14:44:57,468 Alternatively, you can also rely on setuptools' discovery methods 2023-06-30T14:44:57,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-06-30T14:44:57,468 instead of `find_packages(...)`/`find:`). 2023-06-30T14:44:57,469 You can read more about "package discovery" on setuptools documentation page: 2023-06-30T14:44:57,469 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-06-30T14:44:57,470 If you don't want 'pymlst.data.alembic.wg.versions' to be distributed and are 2023-06-30T14:44:57,470 already explicitly excluding 'pymlst.data.alembic.wg.versions' via 2023-06-30T14:44:57,471 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-06-30T14:44:57,471 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-06-30T14:44:57,471 combination with a more fine grained `package-data` configuration. 2023-06-30T14:44:57,472 You can read more about "package data files" on setuptools documentation page: 2023-06-30T14:44:57,472 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-06-30T14:44:57,473 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-06-30T14:44:57,474 even if it does not contain any `.py` files. 2023-06-30T14:44:57,474 On the other hand, currently there is no concept of package data 2023-06-30T14:44:57,474 directory, all directories are treated like packages. 2023-06-30T14:44:57,475 ******************************************************************************** 2023-06-30T14:44:57,475 !! 2023-06-30T14:44:57,476 check.warn(importable) 2023-06-30T14:44:57,476 creating build/lib/pymlst/data 2023-06-30T14:44:57,477 creating build/lib/pymlst/data/alembic 2023-06-30T14:44:57,477 copying pymlst/data/alembic/alembic.ini -> build/lib/pymlst/data/alembic 2023-06-30T14:44:57,477 creating build/lib/pymlst/data/alembic/cla 2023-06-30T14:44:57,477 copying pymlst/data/alembic/cla/env.py -> build/lib/pymlst/data/alembic/cla 2023-06-30T14:44:57,478 copying pymlst/data/alembic/cla/script.py.mako -> build/lib/pymlst/data/alembic/cla 2023-06-30T14:44:57,478 creating build/lib/pymlst/data/alembic/cla/versions 2023-06-30T14:44:57,478 copying pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/lib/pymlst/data/alembic/cla/versions 2023-06-30T14:44:57,479 creating build/lib/pymlst/data/alembic/wg 2023-06-30T14:44:57,479 copying pymlst/data/alembic/wg/env.py -> build/lib/pymlst/data/alembic/wg 2023-06-30T14:44:57,479 copying pymlst/data/alembic/wg/script.py.mako -> build/lib/pymlst/data/alembic/wg 2023-06-30T14:44:57,480 creating build/lib/pymlst/data/alembic/wg/versions 2023-06-30T14:44:57,480 copying pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/lib/pymlst/data/alembic/wg/versions 2023-06-30T14:44:57,548 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-06-30T14:44:57,548 !! 2023-06-30T14:44:57,549 ******************************************************************************** 2023-06-30T14:44:57,549 Please avoid running ``setup.py`` directly. 2023-06-30T14:44:57,550 Instead, use pypa/build, pypa/installer, pypa/build or 2023-06-30T14:44:57,550 other standards-based tools. 2023-06-30T14:44:57,551 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-06-30T14:44:57,551 ******************************************************************************** 2023-06-30T14:44:57,552 !! 2023-06-30T14:44:57,552 self.initialize_options() 2023-06-30T14:44:57,614 installing to build/bdist.linux-armv7l/wheel 2023-06-30T14:44:57,615 running install 2023-06-30T14:44:57,674 running install_lib 2023-06-30T14:44:57,744 creating build/bdist.linux-armv7l 2023-06-30T14:44:57,745 creating build/bdist.linux-armv7l/wheel 2023-06-30T14:44:57,748 creating build/bdist.linux-armv7l/wheel/pymlst 2023-06-30T14:44:57,750 copying build/lib/pymlst/cmd.py -> build/bdist.linux-armv7l/wheel/pymlst 2023-06-30T14:44:57,755 creating build/bdist.linux-armv7l/wheel/pymlst/wg 2023-06-30T14:44:57,757 copying build/lib/pymlst/wg/core.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2023-06-30T14:44:57,763 copying build/lib/pymlst/wg/extractors.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2023-06-30T14:44:57,768 creating build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,770 copying build/lib/pymlst/wg/commands/msa.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,774 copying build/lib/pymlst/wg/commands/sequence.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,777 copying build/lib/pymlst/wg/commands/add.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,781 copying build/lib/pymlst/wg/commands/recombinaison.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,784 copying build/lib/pymlst/wg/commands/distance.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,788 copying build/lib/pymlst/wg/commands/stats.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,791 copying build/lib/pymlst/wg/commands/mlst.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,795 copying build/lib/pymlst/wg/commands/subgraph.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,798 copying build/lib/pymlst/wg/commands/add2.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,802 copying build/lib/pymlst/wg/commands/gene.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,805 copying build/lib/pymlst/wg/commands/import.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,809 copying build/lib/pymlst/wg/commands/strain.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,813 copying build/lib/pymlst/wg/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,815 copying build/lib/pymlst/wg/commands/create.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,819 copying build/lib/pymlst/wg/commands/remove.py -> build/bdist.linux-armv7l/wheel/pymlst/wg/commands 2023-06-30T14:44:57,823 copying build/lib/pymlst/wg/model.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2023-06-30T14:44:57,827 copying build/lib/pymlst/wg/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/wg 2023-06-30T14:44:57,830 copying build/lib/pymlst/version.py -> build/bdist.linux-armv7l/wheel/pymlst 2023-06-30T14:44:57,835 creating build/bdist.linux-armv7l/wheel/pymlst/data 2023-06-30T14:44:57,837 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic 2023-06-30T14:44:57,839 copying build/lib/pymlst/data/alembic/alembic.ini -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic 2023-06-30T14:44:57,844 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2023-06-30T14:44:57,846 copying build/lib/pymlst/data/alembic/wg/script.py.mako -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2023-06-30T14:44:57,851 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg/versions 2023-06-30T14:44:57,853 copying build/lib/pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg/versions 2023-06-30T14:44:57,856 copying build/lib/pymlst/data/alembic/wg/env.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg 2023-06-30T14:44:57,861 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2023-06-30T14:44:57,863 copying build/lib/pymlst/data/alembic/cla/script.py.mako -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2023-06-30T14:44:57,868 creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla/versions 2023-06-30T14:44:57,869 copying build/lib/pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla/versions 2023-06-30T14:44:57,873 copying build/lib/pymlst/data/alembic/cla/env.py -> build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla 2023-06-30T14:44:57,878 creating build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,880 copying build/lib/pymlst/common/web.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,884 copying build/lib/pymlst/common/blat.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,888 copying build/lib/pymlst/common/psl.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,892 copying build/lib/pymlst/common/exceptions.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,897 creating build/bdist.linux-armv7l/wheel/pymlst/common/commands 2023-06-30T14:44:57,898 copying build/lib/pymlst/common/commands/configure.py -> build/bdist.linux-armv7l/wheel/pymlst/common/commands 2023-06-30T14:44:57,902 copying build/lib/pymlst/common/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/common/commands 2023-06-30T14:44:57,905 copying build/lib/pymlst/common/kma.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,909 copying build/lib/pymlst/common/utils.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,913 copying build/lib/pymlst/common/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,916 copying build/lib/pymlst/common/mafft.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,919 copying build/lib/pymlst/common/flag.py -> build/bdist.linux-armv7l/wheel/pymlst/common 2023-06-30T14:44:57,923 copying build/lib/pymlst/config.py -> build/bdist.linux-armv7l/wheel/pymlst 2023-06-30T14:44:57,927 copying build/lib/pymlst/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst 2023-06-30T14:44:57,931 creating build/bdist.linux-armv7l/wheel/pymlst/cla 2023-06-30T14:44:57,933 copying build/lib/pymlst/cla/core.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2023-06-30T14:44:57,940 creating build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-06-30T14:44:57,942 copying build/lib/pymlst/cla/commands/search.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-06-30T14:44:57,946 copying build/lib/pymlst/cla/commands/search2.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-06-30T14:44:57,950 copying build/lib/pymlst/cla/commands/import.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-06-30T14:44:57,953 copying build/lib/pymlst/cla/commands/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-06-30T14:44:57,956 copying build/lib/pymlst/cla/commands/create.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-06-30T14:44:57,960 copying build/lib/pymlst/cla/commands/remove.py -> build/bdist.linux-armv7l/wheel/pymlst/cla/commands 2023-06-30T14:44:57,964 copying build/lib/pymlst/cla/model.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2023-06-30T14:44:57,968 copying build/lib/pymlst/cla/__init__.py -> build/bdist.linux-armv7l/wheel/pymlst/cla 2023-06-30T14:44:57,970 running install_egg_info 2023-06-30T14:44:58,039 Copying PyMLST.egg-info to build/bdist.linux-armv7l/wheel/PyMLST-2.1.4-py3.7.egg-info 2023-06-30T14:44:58,066 running install_scripts 2023-06-30T14:44:58,110 creating build/bdist.linux-armv7l/wheel/PyMLST-2.1.4.dist-info/WHEEL 2023-06-30T14:44:58,115 creating '/tmp/pip-wheel-ou25tbdy/PyMLST-2.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-06-30T14:44:58,123 adding 'pymlst/__init__.py' 2023-06-30T14:44:58,126 adding 'pymlst/cmd.py' 2023-06-30T14:44:58,129 adding 'pymlst/config.py' 2023-06-30T14:44:58,131 adding 'pymlst/version.py' 2023-06-30T14:44:58,135 adding 'pymlst/cla/__init__.py' 2023-06-30T14:44:58,143 adding 'pymlst/cla/core.py' 2023-06-30T14:44:58,146 adding 'pymlst/cla/model.py' 2023-06-30T14:44:58,149 adding 'pymlst/cla/commands/__init__.py' 2023-06-30T14:44:58,152 adding 'pymlst/cla/commands/create.py' 2023-06-30T14:44:58,154 adding 'pymlst/cla/commands/import.py' 2023-06-30T14:44:58,157 adding 'pymlst/cla/commands/remove.py' 2023-06-30T14:44:58,160 adding 'pymlst/cla/commands/search.py' 2023-06-30T14:44:58,163 adding 'pymlst/cla/commands/search2.py' 2023-06-30T14:44:58,166 adding 'pymlst/common/__init__.py' 2023-06-30T14:44:58,169 adding 'pymlst/common/blat.py' 2023-06-30T14:44:58,171 adding 'pymlst/common/exceptions.py' 2023-06-30T14:44:58,174 adding 'pymlst/common/flag.py' 2023-06-30T14:44:58,177 adding 'pymlst/common/kma.py' 2023-06-30T14:44:58,179 adding 'pymlst/common/mafft.py' 2023-06-30T14:44:58,183 adding 'pymlst/common/psl.py' 2023-06-30T14:44:58,186 adding 'pymlst/common/utils.py' 2023-06-30T14:44:58,190 adding 'pymlst/common/web.py' 2023-06-30T14:44:58,194 adding 'pymlst/common/commands/__init__.py' 2023-06-30T14:44:58,196 adding 'pymlst/common/commands/configure.py' 2023-06-30T14:44:58,201 adding 'pymlst/data/alembic/alembic.ini' 2023-06-30T14:44:58,205 adding 'pymlst/data/alembic/cla/env.py' 2023-06-30T14:44:58,207 adding 'pymlst/data/alembic/cla/script.py.mako' 2023-06-30T14:44:58,211 adding 'pymlst/data/alembic/cla/versions/21efe503d07d_initial.py' 2023-06-30T14:44:58,215 adding 'pymlst/data/alembic/wg/env.py' 2023-06-30T14:44:58,217 adding 'pymlst/data/alembic/wg/script.py.mako' 2023-06-30T14:44:58,222 adding 'pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py' 2023-06-30T14:44:58,225 adding 'pymlst/wg/__init__.py' 2023-06-30T14:44:58,235 adding 'pymlst/wg/core.py' 2023-06-30T14:44:58,240 adding 'pymlst/wg/extractors.py' 2023-06-30T14:44:58,243 adding 'pymlst/wg/model.py' 2023-06-30T14:44:58,247 adding 'pymlst/wg/commands/__init__.py' 2023-06-30T14:44:58,249 adding 'pymlst/wg/commands/add.py' 2023-06-30T14:44:58,252 adding 'pymlst/wg/commands/add2.py' 2023-06-30T14:44:58,255 adding 'pymlst/wg/commands/create.py' 2023-06-30T14:44:58,257 adding 'pymlst/wg/commands/distance.py' 2023-06-30T14:44:58,260 adding 'pymlst/wg/commands/gene.py' 2023-06-30T14:44:58,263 adding 'pymlst/wg/commands/import.py' 2023-06-30T14:44:58,265 adding 'pymlst/wg/commands/mlst.py' 2023-06-30T14:44:58,268 adding 'pymlst/wg/commands/msa.py' 2023-06-30T14:44:58,271 adding 'pymlst/wg/commands/recombinaison.py' 2023-06-30T14:44:58,273 adding 'pymlst/wg/commands/remove.py' 2023-06-30T14:44:58,276 adding 'pymlst/wg/commands/sequence.py' 2023-06-30T14:44:58,278 adding 'pymlst/wg/commands/stats.py' 2023-06-30T14:44:58,281 adding 'pymlst/wg/commands/strain.py' 2023-06-30T14:44:58,283 adding 'pymlst/wg/commands/subgraph.py' 2023-06-30T14:44:58,288 adding 'PyMLST-2.1.4.dist-info/METADATA' 2023-06-30T14:44:58,290 adding 'PyMLST-2.1.4.dist-info/WHEEL' 2023-06-30T14:44:58,292 adding 'PyMLST-2.1.4.dist-info/entry_points.txt' 2023-06-30T14:44:58,294 adding 'PyMLST-2.1.4.dist-info/top_level.txt' 2023-06-30T14:44:58,297 adding 'PyMLST-2.1.4.dist-info/RECORD' 2023-06-30T14:44:58,302 removing build/bdist.linux-armv7l/wheel 2023-06-30T14:44:58,515 Building wheel for pymlst (setup.py): finished with status 'done' 2023-06-30T14:44:58,523 Created wheel for pymlst: filename=PyMLST-2.1.4-py3-none-any.whl size=56558 sha256=1ef8f7966d09ce4aaf7cb04b9eb249944571ae0ea90baf0208af43def98b40aa 2023-06-30T14:44:58,526 Stored in directory: /tmp/pip-ephem-wheel-cache-4hozfiju/wheels/91/4b/c1/96888d722089537689675939b6c9684638005bffda105ba4e6 2023-06-30T14:44:58,559 Successfully built pymlst 2023-06-30T14:44:58,571 Removed build tracker: '/tmp/pip-build-tracker-4gqf0m45'