2023-07-03T12:47:32,172 Created temporary directory: /tmp/pip-build-tracker-41ztbo24 2023-07-03T12:47:32,173 Initialized build tracking at /tmp/pip-build-tracker-41ztbo24 2023-07-03T12:47:32,173 Created build tracker: /tmp/pip-build-tracker-41ztbo24 2023-07-03T12:47:32,173 Entered build tracker: /tmp/pip-build-tracker-41ztbo24 2023-07-03T12:47:32,174 Created temporary directory: /tmp/pip-wheel-yxpl3x8h 2023-07-03T12:47:32,177 Created temporary directory: /tmp/pip-ephem-wheel-cache-otowmf3i 2023-07-03T12:47:32,200 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-03T12:47:32,203 2 location(s) to search for versions of pmx-biobb: 2023-07-03T12:47:32,203 * https://pypi.org/simple/pmx-biobb/ 2023-07-03T12:47:32,203 * https://www.piwheels.org/simple/pmx-biobb/ 2023-07-03T12:47:32,204 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/ 2023-07-03T12:47:32,204 Getting page https://pypi.org/simple/pmx-biobb/ 2023-07-03T12:47:32,206 Found index url https://pypi.org/simple/ 2023-07-03T12:47:32,266 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json 2023-07-03T12:47:32,271 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,271 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,272 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,272 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,272 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,273 Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,273 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,273 Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0 2023-07-03T12:47:32,274 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,274 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,274 Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1 2023-07-03T12:47:32,275 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,275 Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2 2023-07-03T12:47:32,276 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,276 Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3 2023-07-03T12:47:32,276 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,277 Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0 2023-07-03T12:47:32,277 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,278 Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1 2023-07-03T12:47:32,278 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,278 Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2 2023-07-03T12:47:32,279 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/21/d8/92f5da41c0ccee7807122989b44711b075159e3129707c40a469a5333825/pmx_biobb-4.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,279 Found link https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.2 2023-07-03T12:47:32,280 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/ 2023-07-03T12:47:32,280 Getting page https://www.piwheels.org/simple/pmx-biobb/ 2023-07-03T12:47:32,281 Found index url https://www.piwheels.org/simple/ 2023-07-03T12:47:32,440 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html 2023-07-03T12:47:32,450 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv7l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,451 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv6l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,451 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,451 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv6l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,452 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,452 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,452 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,452 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,452 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,452 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,453 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,453 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,453 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,453 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,453 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,454 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,454 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,454 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,454 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,454 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,455 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,455 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,455 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,455 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,455 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,456 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,456 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,456 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,456 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,456 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-03T12:47:32,457 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,457 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,457 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,457 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-03T12:47:32,457 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/ 2023-07-03T12:47:32,458 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/ 2023-07-03T12:47:32,476 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates 2023-07-03T12:47:32,493 Collecting pmx-biobb==4.1.2 2023-07-03T12:47:32,495 Created temporary directory: /tmp/pip-unpack-0q6vhu5o 2023-07-03T12:47:32,549 Downloading pmx_biobb-4.1.2.tar.gz (5.4 MB) 2023-07-03T12:47:35,053 Added pmx-biobb==4.1.2 from https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-41ztbo24' 2023-07-03T12:47:35,054 Running setup.py (path:/tmp/pip-wheel-yxpl3x8h/pmx-biobb_0c5591a1eb7447b29dddbe7788c2c2e1/setup.py) egg_info for package pmx-biobb 2023-07-03T12:47:35,055 Created temporary directory: /tmp/pip-pip-egg-info-gbaoo9z_ 2023-07-03T12:47:35,055 Preparing metadata (setup.py): started 2023-07-03T12:47:35,056 Running command python setup.py egg_info 2023-07-03T12:47:35,689 running egg_info 2023-07-03T12:47:35,690 creating /tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info 2023-07-03T12:47:35,716 writing /tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info/PKG-INFO 2023-07-03T12:47:35,719 writing dependency_links to /tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info/dependency_links.txt 2023-07-03T12:47:35,720 writing entry points to /tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info/entry_points.txt 2023-07-03T12:47:35,722 writing requirements to /tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info/requires.txt 2023-07-03T12:47:35,723 writing top-level names to /tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info/top_level.txt 2023-07-03T12:47:35,724 writing manifest file '/tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info/SOURCES.txt' 2023-07-03T12:47:35,985 reading manifest file '/tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info/SOURCES.txt' 2023-07-03T12:47:35,987 reading manifest template 'MANIFEST.in' 2023-07-03T12:47:36,010 adding license file 'LICENSE' 2023-07-03T12:47:36,024 writing manifest file '/tmp/pip-pip-egg-info-gbaoo9z_/pmx_biobb.egg-info/SOURCES.txt' 2023-07-03T12:47:36,094 Preparing metadata (setup.py): finished with status 'done' 2023-07-03T12:47:36,099 Source in /tmp/pip-wheel-yxpl3x8h/pmx-biobb_0c5591a1eb7447b29dddbe7788c2c2e1 has version 4.1.2, which satisfies requirement pmx-biobb==4.1.2 from https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz 2023-07-03T12:47:36,100 Removed pmx-biobb==4.1.2 from https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-41ztbo24' 2023-07-03T12:47:36,107 Created temporary directory: /tmp/pip-unpack-_715_ai1 2023-07-03T12:47:36,107 Building wheels for collected packages: pmx-biobb 2023-07-03T12:47:36,111 Created temporary directory: /tmp/pip-wheel-prhtjokh 2023-07-03T12:47:36,112 Building wheel for pmx-biobb (setup.py): started 2023-07-03T12:47:36,113 Destination directory: /tmp/pip-wheel-prhtjokh 2023-07-03T12:47:36,113 Running command python setup.py bdist_wheel 2023-07-03T12:47:36,772 running bdist_wheel 2023-07-03T12:47:37,045 running build 2023-07-03T12:47:37,045 running build_py 2023-07-03T12:47:37,050 creating build 2023-07-03T12:47:37,050 creating build/lib.linux-armv7l-cpython-39 2023-07-03T12:47:37,051 creating build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,052 copying src/pmx/rosetta.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,054 copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,056 copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,058 copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,061 copying src/pmx/summary.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,063 copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,065 copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,068 copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,070 copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,072 copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,074 copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,076 copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,079 copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,082 copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,084 copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,087 copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,090 copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,093 copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,096 copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,100 copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,104 copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,106 copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,111 copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,113 copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,114 copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,116 copying src/pmx/AbsRestraints.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,119 copying src/pmx/rosetta_analyze.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,121 copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,124 copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,126 copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-03T12:47:37,128 running egg_info 2023-07-03T12:47:37,185 writing src/pmx_biobb.egg-info/PKG-INFO 2023-07-03T12:47:37,186 writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt 2023-07-03T12:47:37,188 writing entry points to src/pmx_biobb.egg-info/entry_points.txt 2023-07-03T12:47:37,190 writing requirements to src/pmx_biobb.egg-info/requires.txt 2023-07-03T12:47:37,191 writing top-level names to src/pmx_biobb.egg-info/top_level.txt 2023-07-03T12:47:37,221 reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-07-03T12:47:37,230 reading manifest template 'MANIFEST.in' 2023-07-03T12:47:37,247 adding license file 'LICENSE' 2023-07-03T12:47:37,265 writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-07-03T12:47:37,269 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data' is absent from the `packages` configuration. 2023-07-03T12:47:37,269 !! 2023-07-03T12:47:37,269 ******************************************************************************** 2023-07-03T12:47:37,269 ############################ 2023-07-03T12:47:37,269 # Package would be ignored # 2023-07-03T12:47:37,269 ############################ 2023-07-03T12:47:37,270 Python recognizes 'pmx.data' as an importable package[^1], 2023-07-03T12:47:37,270 but it is absent from setuptools' `packages` configuration. 2023-07-03T12:47:37,270 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-03T12:47:37,270 package, please make sure that 'pmx.data' is explicitly added 2023-07-03T12:47:37,270 to the `packages` configuration field. 2023-07-03T12:47:37,270 Alternatively, you can also rely on setuptools' discovery methods 2023-07-03T12:47:37,270 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-03T12:47:37,271 instead of `find_packages(...)`/`find:`). 2023-07-03T12:47:37,271 You can read more about "package discovery" on setuptools documentation page: 2023-07-03T12:47:37,271 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-03T12:47:37,271 If you don't want 'pmx.data' to be distributed and are 2023-07-03T12:47:37,271 already explicitly excluding 'pmx.data' via 2023-07-03T12:47:37,272 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-03T12:47:37,272 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-03T12:47:37,272 combination with a more fine grained `package-data` configuration. 2023-07-03T12:47:37,272 You can read more about "package data files" on setuptools documentation page: 2023-07-03T12:47:37,272 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-03T12:47:37,273 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-03T12:47:37,273 even if it does not contain any `.py` files. 2023-07-03T12:47:37,273 On the other hand, currently there is no concept of package data 2023-07-03T12:47:37,273 directory, all directories are treated like packages. 2023-07-03T12:47:37,273 ******************************************************************************** 2023-07-03T12:47:37,273 !! 2023-07-03T12:47:37,273 check.warn(importable) 2023-07-03T12:47:37,274 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration. 2023-07-03T12:47:37,274 !! 2023-07-03T12:47:37,274 ******************************************************************************** 2023-07-03T12:47:37,274 ############################ 2023-07-03T12:47:37,274 # Package would be ignored # 2023-07-03T12:47:37,274 ############################ 2023-07-03T12:47:37,274 Python recognizes 'pmx.data.mutff' as an importable package[^1], 2023-07-03T12:47:37,274 but it is absent from setuptools' `packages` configuration. 2023-07-03T12:47:37,275 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-03T12:47:37,275 package, please make sure that 'pmx.data.mutff' is explicitly added 2023-07-03T12:47:37,275 to the `packages` configuration field. 2023-07-03T12:47:37,275 Alternatively, you can also rely on setuptools' discovery methods 2023-07-03T12:47:37,275 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-03T12:47:37,275 instead of `find_packages(...)`/`find:`). 2023-07-03T12:47:37,276 You can read more about "package discovery" on setuptools documentation page: 2023-07-03T12:47:37,276 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-03T12:47:37,276 If you don't want 'pmx.data.mutff' to be distributed and are 2023-07-03T12:47:37,276 already explicitly excluding 'pmx.data.mutff' via 2023-07-03T12:47:37,276 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-03T12:47:37,276 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-03T12:47:37,276 combination with a more fine grained `package-data` configuration. 2023-07-03T12:47:37,277 You can read more about "package data files" on setuptools documentation page: 2023-07-03T12:47:37,277 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-03T12:47:37,277 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-03T12:47:37,277 even if it does not contain any `.py` files. 2023-07-03T12:47:37,277 On the other hand, currently there is no concept of package data 2023-07-03T12:47:37,278 directory, all directories are treated like packages. 2023-07-03T12:47:37,278 ******************************************************************************** 2023-07-03T12:47:37,278 !! 2023-07-03T12:47:37,278 check.warn(importable) 2023-07-03T12:47:37,290 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration. 2023-07-03T12:47:37,290 !! 2023-07-03T12:47:37,290 ******************************************************************************** 2023-07-03T12:47:37,290 ############################ 2023-07-03T12:47:37,290 # Package would be ignored # 2023-07-03T12:47:37,290 ############################ 2023-07-03T12:47:37,290 Python recognizes 'pmx.extensions.pmx' as an importable package[^1], 2023-07-03T12:47:37,291 but it is absent from setuptools' `packages` configuration. 2023-07-03T12:47:37,291 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-03T12:47:37,291 package, please make sure that 'pmx.extensions.pmx' is explicitly added 2023-07-03T12:47:37,291 to the `packages` configuration field. 2023-07-03T12:47:37,291 Alternatively, you can also rely on setuptools' discovery methods 2023-07-03T12:47:37,291 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-03T12:47:37,292 instead of `find_packages(...)`/`find:`). 2023-07-03T12:47:37,292 You can read more about "package discovery" on setuptools documentation page: 2023-07-03T12:47:37,292 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-03T12:47:37,292 If you don't want 'pmx.extensions.pmx' to be distributed and are 2023-07-03T12:47:37,292 already explicitly excluding 'pmx.extensions.pmx' via 2023-07-03T12:47:37,292 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-03T12:47:37,293 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-03T12:47:37,293 combination with a more fine grained `package-data` configuration. 2023-07-03T12:47:37,293 You can read more about "package data files" on setuptools documentation page: 2023-07-03T12:47:37,293 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-03T12:47:37,294 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-03T12:47:37,294 even if it does not contain any `.py` files. 2023-07-03T12:47:37,294 On the other hand, currently there is no concept of package data 2023-07-03T12:47:37,294 directory, all directories are treated like packages. 2023-07-03T12:47:37,294 ******************************************************************************** 2023-07-03T12:47:37,294 !! 2023-07-03T12:47:37,294 check.warn(importable) 2023-07-03T12:47:37,294 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration. 2023-07-03T12:47:37,295 !! 2023-07-03T12:47:37,295 ******************************************************************************** 2023-07-03T12:47:37,295 ############################ 2023-07-03T12:47:37,295 # Package would be ignored # 2023-07-03T12:47:37,295 ############################ 2023-07-03T12:47:37,295 Python recognizes 'pmx.extensions.xdr' as an importable package[^1], 2023-07-03T12:47:37,295 but it is absent from setuptools' `packages` configuration. 2023-07-03T12:47:37,296 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-03T12:47:37,296 package, please make sure that 'pmx.extensions.xdr' is explicitly added 2023-07-03T12:47:37,296 to the `packages` configuration field. 2023-07-03T12:47:37,296 Alternatively, you can also rely on setuptools' discovery methods 2023-07-03T12:47:37,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-03T12:47:37,296 instead of `find_packages(...)`/`find:`). 2023-07-03T12:47:37,296 You can read more about "package discovery" on setuptools documentation page: 2023-07-03T12:47:37,297 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-03T12:47:37,297 If you don't want 'pmx.extensions.xdr' to be distributed and are 2023-07-03T12:47:37,297 already explicitly excluding 'pmx.extensions.xdr' via 2023-07-03T12:47:37,297 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-03T12:47:37,297 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-03T12:47:37,297 combination with a more fine grained `package-data` configuration. 2023-07-03T12:47:37,298 You can read more about "package data files" on setuptools documentation page: 2023-07-03T12:47:37,298 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-03T12:47:37,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-03T12:47:37,298 even if it does not contain any `.py` files. 2023-07-03T12:47:37,298 On the other hand, currently there is no concept of package data 2023-07-03T12:47:37,298 directory, all directories are treated like packages. 2023-07-03T12:47:37,299 ******************************************************************************** 2023-07-03T12:47:37,299 !! 2023-07-03T12:47:37,299 check.warn(importable) 2023-07-03T12:47:37,299 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration. 2023-07-03T12:47:37,299 !! 2023-07-03T12:47:37,299 ******************************************************************************** 2023-07-03T12:47:37,299 ############################ 2023-07-03T12:47:37,300 # Package would be ignored # 2023-07-03T12:47:37,300 ############################ 2023-07-03T12:47:37,300 Python recognizes 'pmx.scripts' as an importable package[^1], 2023-07-03T12:47:37,300 but it is absent from setuptools' `packages` configuration. 2023-07-03T12:47:37,300 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-03T12:47:37,300 package, please make sure that 'pmx.scripts' is explicitly added 2023-07-03T12:47:37,300 to the `packages` configuration field. 2023-07-03T12:47:37,300 Alternatively, you can also rely on setuptools' discovery methods 2023-07-03T12:47:37,301 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-03T12:47:37,301 instead of `find_packages(...)`/`find:`). 2023-07-03T12:47:37,301 You can read more about "package discovery" on setuptools documentation page: 2023-07-03T12:47:37,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-03T12:47:37,301 If you don't want 'pmx.scripts' to be distributed and are 2023-07-03T12:47:37,302 already explicitly excluding 'pmx.scripts' via 2023-07-03T12:47:37,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-03T12:47:37,302 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-03T12:47:37,302 combination with a more fine grained `package-data` configuration. 2023-07-03T12:47:37,302 You can read more about "package data files" on setuptools documentation page: 2023-07-03T12:47:37,302 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-03T12:47:37,303 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-03T12:47:37,303 even if it does not contain any `.py` files. 2023-07-03T12:47:37,303 On the other hand, currently there is no concept of package data 2023-07-03T12:47:37,303 directory, all directories are treated like packages. 2023-07-03T12:47:37,303 ******************************************************************************** 2023-07-03T12:47:37,303 !! 2023-07-03T12:47:37,303 check.warn(importable) 2023-07-03T12:47:37,303 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts.icolos_entrypoints' is absent from the `packages` configuration. 2023-07-03T12:47:37,304 !! 2023-07-03T12:47:37,304 ******************************************************************************** 2023-07-03T12:47:37,304 ############################ 2023-07-03T12:47:37,304 # Package would be ignored # 2023-07-03T12:47:37,304 ############################ 2023-07-03T12:47:37,304 Python recognizes 'pmx.scripts.icolos_entrypoints' as an importable package[^1], 2023-07-03T12:47:37,304 but it is absent from setuptools' `packages` configuration. 2023-07-03T12:47:37,305 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-03T12:47:37,305 package, please make sure that 'pmx.scripts.icolos_entrypoints' is explicitly added 2023-07-03T12:47:37,305 to the `packages` configuration field. 2023-07-03T12:47:37,305 Alternatively, you can also rely on setuptools' discovery methods 2023-07-03T12:47:37,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-03T12:47:37,305 instead of `find_packages(...)`/`find:`). 2023-07-03T12:47:37,305 You can read more about "package discovery" on setuptools documentation page: 2023-07-03T12:47:37,306 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-03T12:47:37,306 If you don't want 'pmx.scripts.icolos_entrypoints' to be distributed and are 2023-07-03T12:47:37,306 already explicitly excluding 'pmx.scripts.icolos_entrypoints' via 2023-07-03T12:47:37,306 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-03T12:47:37,306 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-03T12:47:37,306 combination with a more fine grained `package-data` configuration. 2023-07-03T12:47:37,307 You can read more about "package data files" on setuptools documentation page: 2023-07-03T12:47:37,307 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-03T12:47:37,307 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-03T12:47:37,307 even if it does not contain any `.py` files. 2023-07-03T12:47:37,307 On the other hand, currently there is no concept of package data 2023-07-03T12:47:37,307 directory, all directories are treated like packages. 2023-07-03T12:47:37,308 ******************************************************************************** 2023-07-03T12:47:37,308 !! 2023-07-03T12:47:37,308 check.warn(importable) 2023-07-03T12:47:37,313 creating build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-03T12:47:37,314 copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-03T12:47:37,321 copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-03T12:47:37,575 copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-03T12:47:37,578 copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-03T12:47:37,582 copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-03T12:47:37,587 copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-03T12:47:37,592 copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-03T12:47:37,596 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-03T12:47:37,597 copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-03T12:47:37,599 copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-03T12:47:37,601 copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-03T12:47:37,604 copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-03T12:47:37,607 copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-03T12:47:37,609 copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-03T12:47:37,611 copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-03T12:47:37,613 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,614 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,616 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,618 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,621 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,623 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,625 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,627 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,629 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,633 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,635 copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,638 copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,639 copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,642 copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,643 copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,646 copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,650 copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,652 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,654 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,656 copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,658 copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,660 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,717 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,737 copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,739 copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,741 copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,743 copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,746 copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,748 copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,750 copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,752 copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,754 copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,756 copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,759 copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,761 copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:37,763 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,764 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,766 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,769 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,771 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,773 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,775 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,777 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,782 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,784 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,786 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,789 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,809 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,812 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,814 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,816 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,818 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,822 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,825 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,828 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,830 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,832 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,834 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,836 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,838 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,891 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,912 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,918 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,923 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,925 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,928 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,930 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,932 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,934 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,937 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,939 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,941 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,942 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,944 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,946 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,948 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,950 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:37,952 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,953 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,955 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,957 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,959 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,961 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,963 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,967 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,970 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,972 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:37,975 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,003 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,006 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,008 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,010 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,012 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,015 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,017 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,020 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,022 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,024 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,026 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,028 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,030 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,072 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,093 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,100 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,104 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,107 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,110 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,111 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,114 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,115 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,118 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,120 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,122 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,124 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,126 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,128 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,129 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,131 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:38,133 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,134 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,137 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,138 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,141 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,142 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,144 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,149 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,151 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,153 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,155 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,157 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,159 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,162 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,165 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,167 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,169 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,171 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,173 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,175 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,235 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,260 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,262 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,264 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,266 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,269 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,271 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,273 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,275 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,277 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,278 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,280 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,282 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:38,284 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,285 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,287 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,289 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,291 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,293 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,295 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,298 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,300 copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,303 copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,306 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,307 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,309 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,311 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,313 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,315 copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,319 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,322 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,325 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,330 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,332 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,334 copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,336 copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,338 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,339 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,342 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,344 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,398 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,418 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,419 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,422 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,424 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,427 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,429 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,432 copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,435 copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,437 copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,439 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,442 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,444 copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,446 copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,449 copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:38,451 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,452 copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,456 copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,461 copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,497 copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,529 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,531 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,533 copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,535 copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,537 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,539 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,541 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,543 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,545 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,547 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,566 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,568 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,570 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,621 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,649 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,658 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,663 copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,664 copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,666 copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,668 copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,670 copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,672 copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:38,674 creating build/lib.linux-armv7l-cpython-39/pmx/extensions 2023-07-03T12:47:38,674 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-03T12:47:38,675 copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-03T12:47:38,678 copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-03T12:47:38,681 copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-03T12:47:38,683 copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-03T12:47:38,685 copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-03T12:47:38,687 copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-03T12:47:38,689 copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-03T12:47:38,692 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,693 copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,696 copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,699 copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,702 copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,704 copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,707 copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,709 copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,712 copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-03T12:47:38,714 creating build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,714 copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,716 copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,719 copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,722 copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,724 copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,726 copying src/pmx/scripts/gen_abs_restraints.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,728 copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,732 copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,734 copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,737 copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,739 copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,741 copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,744 copying src/pmx/scripts/parameterize_ligands.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,747 copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,750 copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,751 copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-03T12:47:38,755 creating build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-07-03T12:47:38,755 copying src/pmx/scripts/icolos_entrypoints/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-07-03T12:47:38,757 copying src/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-07-03T12:47:38,762 UPDATING build/lib.linux-armv7l-cpython-39/pmx/_version.py 2023-07-03T12:47:38,763 set build/lib.linux-armv7l-cpython-39/pmx/_version.py to '4.1.2' 2023-07-03T12:47:38,763 running build_ext 2023-07-03T12:47:38,769 building 'pmx._pmx' extension 2023-07-03T12:47:38,770 creating build/temp.linux-armv7l-cpython-39 2023-07-03T12:47:38,770 creating build/temp.linux-armv7l-cpython-39/src 2023-07-03T12:47:38,771 creating build/temp.linux-armv7l-cpython-39/src/pmx 2023-07-03T12:47:38,772 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions 2023-07-03T12:47:38,772 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx 2023-07-03T12:47:38,773 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o 2023-07-03T12:47:39,704 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o 2023-07-03T12:47:40,015 src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’: 2023-07-03T12:47:40,016 src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-07-03T12:47:40,016 527 | int nx, ny, nz; 2023-07-03T12:47:40,016 | ^~ 2023-07-03T12:47:40,017 src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’: 2023-07-03T12:47:40,017 src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-07-03T12:47:40,017 586 | int nx, ny, nz; 2023-07-03T12:47:40,017 | ^~ 2023-07-03T12:47:41,658 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o 2023-07-03T12:47:41,992 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o 2023-07-03T12:47:43,320 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so 2023-07-03T12:47:43,441 building 'pmx._xdrio' extension 2023-07-03T12:47:43,441 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr 2023-07-03T12:47:43,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.9 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr/xdrfile.o 2023-07-03T12:47:43,484 src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment] 2023-07-03T12:47:43,484 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-07-03T12:47:43,484 | 2023-07-03T12:47:43,558 In file included from src/pmx/extensions/xdr/xdrfile.c:60: 2023-07-03T12:47:43,559 src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-07-03T12:47:43,559 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-07-03T12:47:43,559 | 2023-07-03T12:47:43,565 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’: 2023-07-03T12:47:43,565 src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-03T12:47:43,565 499 | while (size >= num && num_of_bits < 32) 2023-07-03T12:47:43,565 | ^~ 2023-07-03T12:47:43,566 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’: 2023-07-03T12:47:43,566 src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-03T12:47:43,566 545 | while (bytes[num_of_bytes] >= num) 2023-07-03T12:47:43,566 | ^~ 2023-07-03T12:47:43,567 src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’: 2023-07-03T12:47:43,567 src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-03T12:47:43,567 654 | if (num_of_bits >= num_of_bytes * 8) 2023-07-03T12:47:43,567 | ^~ 2023-07-03T12:47:43,567 src/pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-03T12:47:43,568 656 | for (i = 0; i < num_of_bytes; i++) 2023-07-03T12:47:43,568 | ^ 2023-07-03T12:47:43,568 src/pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-03T12:47:43,568 664 | for (i = 0; i < num_of_bytes-1; i++) 2023-07-03T12:47:43,568 | ^ 2023-07-03T12:47:43,568 src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’: 2023-07-03T12:47:43,569 src/pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-03T12:47:43,569 704 | if (lastbits < num_of_bits) 2023-07-03T12:47:43,569 | ^ 2023-07-03T12:47:43,570 src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-07-03T12:47:43,571 src/pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-03T12:47:43,571 814 | if(size3>xfp->buf1size) 2023-07-03T12:47:43,571 | ^ 2023-07-03T12:47:43,573 src/pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-03T12:47:43,573 866 | maxidx = (LASTIDXxfp->buf1size) 2023-07-03T12:47:43,577 | ^ 2023-07-03T12:47:43,582 src/pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-03T12:47:43,582 1133 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-07-03T12:47:43,582 | ^ 2023-07-03T12:47:43,583 src/pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-03T12:47:43,583 1139 | maxidx = (LASTIDXxfp->buf1size) 2023-07-03T12:47:43,589 | ^ 2023-07-03T12:47:43,591 src/pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-03T12:47:43,591 1366 | maxidx = (LASTIDXxfp->buf1size) { 2023-07-03T12:47:43,598 | ^ 2023-07-03T12:47:43,604 src/pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-03T12:47:43,604 1617 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-07-03T12:47:43,605 | ^ 2023-07-03T12:47:43,605 src/pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-03T12:47:43,605 1622 | maxidx = (LASTIDX build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:46,747 copying build/lib.linux-armv7l-cpython-39/pmx/rosetta.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:46,749 copying build/lib.linux-armv7l-cpython-39/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:46,751 copying build/lib.linux-armv7l-cpython-39/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:46,753 copying build/lib.linux-armv7l-cpython-39/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:46,755 copying build/lib.linux-armv7l-cpython-39/pmx/summary.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:46,758 creating build/bdist.linux-armv7l/wheel/pmx/data 2023-07-03T12:47:46,759 copying build/lib.linux-armv7l-cpython-39/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-03T12:47:46,763 copying build/lib.linux-armv7l-cpython-39/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-03T12:47:47,027 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-03T12:47:47,028 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-03T12:47:47,031 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-03T12:47:47,035 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,036 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,038 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,043 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,045 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,047 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,049 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,052 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,055 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,057 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,099 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,101 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,103 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,105 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,108 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,111 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,114 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,116 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,118 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,120 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,122 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,179 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,181 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,183 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,186 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,188 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,189 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,191 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,193 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,195 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,197 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,198 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,200 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-03T12:47:47,203 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,203 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,205 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,209 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,211 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,212 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,214 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,215 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,218 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,220 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,222 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,223 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,251 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,253 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,256 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,257 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,259 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,262 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,264 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,266 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,268 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,270 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,271 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,333 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,335 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,336 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,339 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,341 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,343 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,344 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,347 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,349 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,350 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,352 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,354 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-03T12:47:47,355 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-03T12:47:47,358 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,359 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,361 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,364 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,366 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,367 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,370 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,371 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,373 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,375 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,377 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,400 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,402 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,405 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,407 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,409 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,411 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,413 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,416 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,418 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,420 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,423 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,425 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,480 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,482 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,484 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,486 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,508 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,510 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,513 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,516 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,523 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,525 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,529 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,531 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,534 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,536 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,538 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,539 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,541 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,544 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-03T12:47:47,547 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,547 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,552 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,553 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,555 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,557 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,559 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,587 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,589 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,610 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,612 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,614 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,616 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,618 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,675 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,677 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,679 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,698 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,700 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,702 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,704 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,711 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,713 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,715 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,735 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,739 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,741 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-03T12:47:47,744 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,745 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,747 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,751 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,753 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,754 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,757 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,759 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,761 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,762 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,764 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,783 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,784 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,787 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,789 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,791 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,793 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,795 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,797 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,799 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,801 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,803 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,805 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,880 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,883 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,885 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,887 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,915 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,918 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,922 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,924 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,926 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,932 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,934 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,939 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,940 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,943 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,945 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,946 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,948 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,949 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,952 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-03T12:47:47,954 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-03T12:47:47,956 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-03T12:47:47,958 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,959 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,961 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,964 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,966 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,968 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,971 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,975 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,977 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,978 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,980 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,983 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,984 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,990 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:47,992 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,019 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,021 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,024 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,026 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,029 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,032 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,034 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,037 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,038 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,040 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,043 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,045 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,099 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,102 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,106 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,108 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,110 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,112 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,114 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,116 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,119 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,121 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,124 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,125 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,129 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,131 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,133 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-03T12:47:48,135 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-03T12:47:48,137 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-03T12:47:48,140 copying build/lib.linux-armv7l-cpython-39/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-03T12:47:48,142 copying build/lib.linux-armv7l-cpython-39/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-03T12:47:48,148 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-03T12:47:48,152 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-03T12:47:48,157 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-03T12:47:48,162 copying build/lib.linux-armv7l-cpython-39/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,164 copying build/lib.linux-armv7l-cpython-39/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,167 copying build/lib.linux-armv7l-cpython-39/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,170 copying build/lib.linux-armv7l-cpython-39/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,172 copying build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,179 copying build/lib.linux-armv7l-cpython-39/pmx/utils.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,182 copying build/lib.linux-armv7l-cpython-39/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,185 copying build/lib.linux-armv7l-cpython-39/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,188 copying build/lib.linux-armv7l-cpython-39/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,191 copying build/lib.linux-armv7l-cpython-39/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,194 creating build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,195 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/parameterize_ligands.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,199 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,202 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,204 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,207 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,210 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,212 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,215 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,217 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,221 creating build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-07-03T12:47:48,222 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-07-03T12:47:48,225 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-07-03T12:47:48,227 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,228 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,231 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,234 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,237 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,240 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,245 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/gen_abs_restraints.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-03T12:47:48,247 copying build/lib.linux-armv7l-cpython-39/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,250 copying build/lib.linux-armv7l-cpython-39/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,254 copying build/lib.linux-armv7l-cpython-39/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,259 copying build/lib.linux-armv7l-cpython-39/pmx/atom.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,263 copying build/lib.linux-armv7l-cpython-39/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,267 copying build/lib.linux-armv7l-cpython-39/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,272 copying build/lib.linux-armv7l-cpython-39/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,275 copying build/lib.linux-armv7l-cpython-39/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,280 copying build/lib.linux-armv7l-cpython-39/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,282 copying build/lib.linux-armv7l-cpython-39/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,285 creating build/bdist.linux-armv7l/wheel/pmx/extensions 2023-07-03T12:47:48,287 creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-03T12:47:48,288 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-03T12:47:48,291 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-03T12:47:48,293 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-03T12:47:48,296 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-03T12:47:48,298 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-03T12:47:48,300 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-03T12:47:48,303 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-03T12:47:48,307 creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,308 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,310 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,313 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,315 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,318 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,320 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,324 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,327 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-03T12:47:48,330 copying build/lib.linux-armv7l-cpython-39/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,332 copying build/lib.linux-armv7l-cpython-39/pmx/AbsRestraints.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,335 copying build/lib.linux-armv7l-cpython-39/pmx/rosetta_analyze.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,338 copying build/lib.linux-armv7l-cpython-39/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,341 copying build/lib.linux-armv7l-cpython-39/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,343 copying build/lib.linux-armv7l-cpython-39/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-03T12:47:48,346 running install_egg_info 2023-07-03T12:47:48,377 Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-4.1.2-py3.9.egg-info 2023-07-03T12:47:48,393 running install_scripts 2023-07-03T12:47:48,444 creating build/bdist.linux-armv7l/wheel/pmx_biobb-4.1.2.dist-info/WHEEL 2023-07-03T12:47:48,447 creating '/tmp/pip-wheel-prhtjokh/pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-03T12:47:48,453 adding 'pmx/AbsRestraints.py' 2023-07-03T12:47:48,455 adding 'pmx/__init__.py' 2023-07-03T12:47:48,493 adding 'pmx/_pmx.cpython-39-arm-linux-gnueabihf.so' 2023-07-03T12:47:48,496 adding 'pmx/_version.py' 2023-07-03T12:47:48,522 adding 'pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so' 2023-07-03T12:47:48,531 adding 'pmx/alchemy.py' 2023-07-03T12:47:48,534 adding 'pmx/analysis.py' 2023-07-03T12:47:48,537 adding 'pmx/atom.py' 2023-07-03T12:47:48,539 adding 'pmx/atomselection.py' 2023-07-03T12:47:48,542 adding 'pmx/builder.py' 2023-07-03T12:47:48,546 adding 'pmx/chain.py' 2023-07-03T12:47:48,550 adding 'pmx/estimators.py' 2023-07-03T12:47:48,553 adding 'pmx/ffparser.py' 2023-07-03T12:47:48,563 adding 'pmx/forcefield.py' 2023-07-03T12:47:48,566 adding 'pmx/geometry.py' 2023-07-03T12:47:48,568 adding 'pmx/gmx.py' 2023-07-03T12:47:48,570 adding 'pmx/jobscript.py' 2023-07-03T12:47:48,579 adding 'pmx/library.py' 2023-07-03T12:47:48,592 adding 'pmx/ligand_alchemy.py' 2023-07-03T12:47:48,598 adding 'pmx/model.py' 2023-07-03T12:47:48,602 adding 'pmx/molecule.py' 2023-07-03T12:47:48,605 adding 'pmx/mutdb.py' 2023-07-03T12:47:48,607 adding 'pmx/ndx.py' 2023-07-03T12:47:48,609 adding 'pmx/options.py' 2023-07-03T12:47:48,611 adding 'pmx/parser.py' 2023-07-03T12:47:48,614 adding 'pmx/rosetta.py' 2023-07-03T12:47:48,617 adding 'pmx/rosetta_analyze.py' 2023-07-03T12:47:48,619 adding 'pmx/rotamer.py' 2023-07-03T12:47:48,622 adding 'pmx/summary.py' 2023-07-03T12:47:48,625 adding 'pmx/utils.py' 2023-07-03T12:47:48,627 adding 'pmx/xdrfile.py' 2023-07-03T12:47:48,629 adding 'pmx/xtc.py' 2023-07-03T12:47:48,656 adding 'pmx/data/aminoacids.pkl' 2023-07-03T12:47:50,487 adding 'pmx/data/bbdep.pkl' 2023-07-03T12:47:50,595 adding 'pmx/data/blosum62_new.mat' 2023-07-03T12:47:50,611 adding 'pmx/data/bp.pkl' 2023-07-03T12:47:50,631 adding 'pmx/data/bp_amber.pkl' 2023-07-03T12:47:50,652 adding 'pmx/data/bp_charmm.pkl' 2023-07-03T12:47:50,662 adding 'pmx/data/rna.pkl' 2023-07-03T12:47:50,665 adding 'pmx/data/mutff/atommass.dat' 2023-07-03T12:47:50,667 adding 'pmx/data/mutff/elements.dat' 2023-07-03T12:47:50,669 adding 'pmx/data/mutff/residuetypes.dat' 2023-07-03T12:47:50,675 adding 'pmx/data/mutff/spc216.gro' 2023-07-03T12:47:50,677 adding 'pmx/data/mutff/specbond.dat' 2023-07-03T12:47:50,679 adding 'pmx/data/mutff/vdwradii.dat' 2023-07-03T12:47:50,680 adding 'pmx/data/mutff/xlateat.dat' 2023-07-03T12:47:50,683 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am' 2023-07-03T12:47:50,685 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in' 2023-07-03T12:47:50,688 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn' 2023-07-03T12:47:50,689 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb' 2023-07-03T12:47:50,691 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb' 2023-07-03T12:47:50,692 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb' 2023-07-03T12:47:50,694 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b' 2023-07-03T12:47:50,701 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp' 2023-07-03T12:47:50,703 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd' 2023-07-03T12:47:50,705 adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp' 2023-07-03T12:47:50,707 adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn' 2023-07-03T12:47:50,708 adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb' 2023-07-03T12:47:50,710 adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b' 2023-07-03T12:47:50,713 adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp' 2023-07-03T12:47:50,720 adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp' 2023-07-03T12:47:50,723 adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp' 2023-07-03T12:47:50,724 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc' 2023-07-03T12:47:50,726 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp' 2023-07-03T12:47:50,727 adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp' 2023-07-03T12:47:50,729 adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp' 2023-07-03T12:47:50,909 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp' 2023-07-03T12:47:50,994 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp' 2023-07-03T12:47:51,004 adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn' 2023-07-03T12:47:51,005 adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb' 2023-07-03T12:47:51,007 adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b' 2023-07-03T12:47:51,010 adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp' 2023-07-03T12:47:51,011 adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp' 2023-07-03T12:47:51,013 adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp' 2023-07-03T12:47:51,014 adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp' 2023-07-03T12:47:51,016 adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp' 2023-07-03T12:47:51,018 adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp' 2023-07-03T12:47:51,019 adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp' 2023-07-03T12:47:51,021 adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp' 2023-07-03T12:47:51,022 adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat' 2023-07-03T12:47:51,026 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn' 2023-07-03T12:47:51,028 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup' 2023-07-03T12:47:51,030 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb' 2023-07-03T12:47:51,031 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb' 2023-07-03T12:47:51,033 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb' 2023-07-03T12:47:51,034 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b' 2023-07-03T12:47:51,043 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp' 2023-07-03T12:47:51,046 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd' 2023-07-03T12:47:51,048 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp' 2023-07-03T12:47:51,052 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-07-03T12:47:51,115 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres' 2023-07-03T12:47:51,127 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp' 2023-07-03T12:47:51,128 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn' 2023-07-03T12:47:51,130 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb' 2023-07-03T12:47:51,131 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b' 2023-07-03T12:47:51,134 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp' 2023-07-03T12:47:51,137 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp' 2023-07-03T12:47:51,142 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp' 2023-07-03T12:47:51,144 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp' 2023-07-03T12:47:51,146 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc' 2023-07-03T12:47:51,147 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp' 2023-07-03T12:47:51,149 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp' 2023-07-03T12:47:51,151 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp' 2023-07-03T12:47:51,308 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp' 2023-07-03T12:47:51,386 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp' 2023-07-03T12:47:51,412 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp' 2023-07-03T12:47:51,422 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp' 2023-07-03T12:47:51,425 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp' 2023-07-03T12:47:51,428 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp' 2023-07-03T12:47:51,430 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn' 2023-07-03T12:47:51,431 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb' 2023-07-03T12:47:51,433 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b' 2023-07-03T12:47:51,436 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp' 2023-07-03T12:47:51,437 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp' 2023-07-03T12:47:51,439 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp' 2023-07-03T12:47:51,441 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp' 2023-07-03T12:47:51,442 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp' 2023-07-03T12:47:51,444 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp' 2023-07-03T12:47:51,445 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp' 2023-07-03T12:47:51,447 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp' 2023-07-03T12:47:51,448 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat' 2023-07-03T12:47:51,451 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn' 2023-07-03T12:47:51,453 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb' 2023-07-03T12:47:51,455 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb' 2023-07-03T12:47:51,456 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb' 2023-07-03T12:47:51,458 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b' 2023-07-03T12:47:51,466 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp' 2023-07-03T12:47:51,469 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd' 2023-07-03T12:47:51,471 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp' 2023-07-03T12:47:51,475 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-07-03T12:47:51,538 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres' 2023-07-03T12:47:51,550 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp' 2023-07-03T12:47:51,551 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn' 2023-07-03T12:47:51,553 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb' 2023-07-03T12:47:51,554 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b' 2023-07-03T12:47:51,557 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp' 2023-07-03T12:47:51,560 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp' 2023-07-03T12:47:51,564 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp' 2023-07-03T12:47:51,566 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp' 2023-07-03T12:47:51,568 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc' 2023-07-03T12:47:51,569 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp' 2023-07-03T12:47:51,571 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp' 2023-07-03T12:47:51,573 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp' 2023-07-03T12:47:51,730 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp' 2023-07-03T12:47:51,809 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp' 2023-07-03T12:47:51,834 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp' 2023-07-03T12:47:51,844 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp' 2023-07-03T12:47:51,848 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp' 2023-07-03T12:47:51,850 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp' 2023-07-03T12:47:51,852 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn' 2023-07-03T12:47:51,854 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb' 2023-07-03T12:47:51,855 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b' 2023-07-03T12:47:51,858 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp' 2023-07-03T12:47:51,860 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp' 2023-07-03T12:47:51,861 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp' 2023-07-03T12:47:51,863 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp' 2023-07-03T12:47:51,864 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp' 2023-07-03T12:47:51,866 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp' 2023-07-03T12:47:51,867 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp' 2023-07-03T12:47:51,869 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp' 2023-07-03T12:47:51,870 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat' 2023-07-03T12:47:51,874 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn' 2023-07-03T12:47:51,875 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-07-03T12:47:51,877 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-07-03T12:47:51,879 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-07-03T12:47:51,880 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-07-03T12:47:51,889 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp' 2023-07-03T12:47:51,892 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-07-03T12:47:51,894 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp' 2023-07-03T12:47:51,895 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn' 2023-07-03T12:47:51,897 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-07-03T12:47:51,898 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-07-03T12:47:51,901 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-07-03T12:47:51,905 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp' 2023-07-03T12:47:51,907 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp' 2023-07-03T12:47:51,909 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc' 2023-07-03T12:47:51,911 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-07-03T12:47:51,912 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-07-03T12:47:51,914 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp' 2023-07-03T12:47:52,144 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp' 2023-07-03T12:47:52,237 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp' 2023-07-03T12:47:52,247 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn' 2023-07-03T12:47:52,249 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-07-03T12:47:52,250 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-07-03T12:47:52,253 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-07-03T12:47:52,255 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp' 2023-07-03T12:47:52,257 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp' 2023-07-03T12:47:52,258 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-07-03T12:47:52,260 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-07-03T12:47:52,262 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-07-03T12:47:52,263 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-07-03T12:47:52,265 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp' 2023-07-03T12:47:52,266 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-07-03T12:47:52,269 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn' 2023-07-03T12:47:52,271 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb' 2023-07-03T12:47:52,272 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb' 2023-07-03T12:47:52,274 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb' 2023-07-03T12:47:52,276 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b' 2023-07-03T12:47:52,280 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp' 2023-07-03T12:47:52,282 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd' 2023-07-03T12:47:52,284 adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp' 2023-07-03T12:47:52,289 adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp' 2023-07-03T12:47:52,291 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn' 2023-07-03T12:47:52,293 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb' 2023-07-03T12:47:52,294 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb' 2023-07-03T12:47:52,296 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb' 2023-07-03T12:47:52,298 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp' 2023-07-03T12:47:52,305 adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp' 2023-07-03T12:47:52,313 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp' 2023-07-03T12:47:52,318 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp' 2023-07-03T12:47:52,331 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp' 2023-07-03T12:47:52,333 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc' 2023-07-03T12:47:52,335 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp' 2023-07-03T12:47:52,337 adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp' 2023-07-03T12:47:52,338 adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp' 2023-07-03T12:47:52,340 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb' 2023-07-03T12:47:52,344 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp' 2023-07-03T12:47:52,346 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn' 2023-07-03T12:47:52,499 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp' 2023-07-03T12:47:52,576 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp' 2023-07-03T12:47:52,585 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn' 2023-07-03T12:47:52,587 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb' 2023-07-03T12:47:52,588 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb' 2023-07-03T12:47:52,590 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb' 2023-07-03T12:47:52,591 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b' 2023-07-03T12:47:52,593 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp' 2023-07-03T12:47:52,595 adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp' 2023-07-03T12:47:52,597 adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp' 2023-07-03T12:47:52,598 adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp' 2023-07-03T12:47:52,600 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp' 2023-07-03T12:47:52,602 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp' 2023-07-03T12:47:52,603 adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp' 2023-07-03T12:47:52,605 adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp' 2023-07-03T12:47:52,606 adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat' 2023-07-03T12:47:52,611 adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp' 2023-07-03T12:47:52,623 adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp' 2023-07-03T12:47:52,708 adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp' 2023-07-03T12:47:52,837 adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp' 2023-07-03T12:47:52,849 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc' 2023-07-03T12:47:52,851 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp' 2023-07-03T12:47:52,853 adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp' 2023-07-03T12:47:52,854 adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp' 2023-07-03T12:47:52,856 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn' 2023-07-03T12:47:52,857 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb' 2023-07-03T12:47:52,859 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb' 2023-07-03T12:47:52,861 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb' 2023-07-03T12:47:52,862 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b' 2023-07-03T12:47:53,001 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp' 2023-07-03T12:47:53,011 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd' 2023-07-03T12:47:53,012 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn' 2023-07-03T12:47:53,179 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp' 2023-07-03T12:47:53,263 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp' 2023-07-03T12:47:53,289 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp' 2023-07-03T12:47:53,298 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp' 2023-07-03T12:47:53,301 adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp' 2023-07-03T12:47:53,302 adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp' 2023-07-03T12:47:53,304 adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp' 2023-07-03T12:47:53,305 adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp' 2023-07-03T12:47:53,307 adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp' 2023-07-03T12:47:53,308 adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat' 2023-07-03T12:47:53,312 adding 'pmx/extensions/pmx/Energy.c' 2023-07-03T12:47:53,314 adding 'pmx/extensions/pmx/Geometry.c' 2023-07-03T12:47:53,318 adding 'pmx/extensions/pmx/Geometry.h' 2023-07-03T12:47:53,319 adding 'pmx/extensions/pmx/cpp_test.cpp' 2023-07-03T12:47:53,321 adding 'pmx/extensions/pmx/init.c' 2023-07-03T12:47:53,323 adding 'pmx/extensions/pmx/pmx.h' 2023-07-03T12:47:53,326 adding 'pmx/extensions/pmx/wrap_Geometry.c' 2023-07-03T12:47:53,328 adding 'pmx/extensions/xdr/trr2xtc.c' 2023-07-03T12:47:53,336 adding 'pmx/extensions/xdr/xdrfile.c' 2023-07-03T12:47:53,339 adding 'pmx/extensions/xdr/xdrfile.h' 2023-07-03T12:47:53,342 adding 'pmx/extensions/xdr/xdrfile_c_test.c' 2023-07-03T12:47:53,344 adding 'pmx/extensions/xdr/xdrfile_trr.c' 2023-07-03T12:47:53,346 adding 'pmx/extensions/xdr/xdrfile_trr.h' 2023-07-03T12:47:53,347 adding 'pmx/extensions/xdr/xdrfile_xtc.c' 2023-07-03T12:47:53,349 adding 'pmx/extensions/xdr/xdrfile_xtc.h' 2023-07-03T12:47:53,351 adding 'pmx/scripts/__init__.py' 2023-07-03T12:47:53,355 adding 'pmx/scripts/analyze_dhdl.py' 2023-07-03T12:47:53,358 adding 'pmx/scripts/atomMapping.py' 2023-07-03T12:47:53,360 adding 'pmx/scripts/build_cyclic_top.py' 2023-07-03T12:47:53,362 adding 'pmx/scripts/cli.py' 2023-07-03T12:47:53,364 adding 'pmx/scripts/gen_abs_restraints.py' 2023-07-03T12:47:53,371 adding 'pmx/scripts/generate_hybrid_residue.py' 2023-07-03T12:47:53,374 adding 'pmx/scripts/generate_hybrid_topology.py' 2023-07-03T12:47:53,376 adding 'pmx/scripts/ligandHybrid.py' 2023-07-03T12:47:53,378 adding 'pmx/scripts/make_double_box.py' 2023-07-03T12:47:53,381 adding 'pmx/scripts/md_setup.py' 2023-07-03T12:47:53,384 adding 'pmx/scripts/mutate.py' 2023-07-03T12:47:53,389 adding 'pmx/scripts/parameterize_ligands.py' 2023-07-03T12:47:53,391 adding 'pmx/scripts/prepare_crooks_runs.py' 2023-07-03T12:47:53,393 adding 'pmx/scripts/set_gmxlib.py' 2023-07-03T12:47:53,395 adding 'pmx/scripts/setup_abfe.py' 2023-07-03T12:47:53,397 adding 'pmx/scripts/icolos_entrypoints/__init__.py' 2023-07-03T12:47:53,399 adding 'pmx/scripts/icolos_entrypoints/assemble_systems.py' 2023-07-03T12:47:53,403 adding 'pmx_biobb-4.1.2.dist-info/LICENSE' 2023-07-03T12:47:53,405 adding 'pmx_biobb-4.1.2.dist-info/METADATA' 2023-07-03T12:47:53,406 adding 'pmx_biobb-4.1.2.dist-info/WHEEL' 2023-07-03T12:47:53,407 adding 'pmx_biobb-4.1.2.dist-info/entry_points.txt' 2023-07-03T12:47:53,408 adding 'pmx_biobb-4.1.2.dist-info/top_level.txt' 2023-07-03T12:47:53,413 adding 'pmx_biobb-4.1.2.dist-info/RECORD' 2023-07-03T12:47:53,484 removing build/bdist.linux-armv7l/wheel 2023-07-03T12:47:53,661 Building wheel for pmx-biobb (setup.py): finished with status 'done' 2023-07-03T12:47:53,723 Created wheel for pmx-biobb: filename=pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl size=5929667 sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a 2023-07-03T12:47:53,724 Stored in directory: /tmp/pip-ephem-wheel-cache-otowmf3i/wheels/05/8b/fb/e1bb3ad4653442959614d71ac3e4d25cc03ca09a543c2f8483 2023-07-03T12:47:53,747 Successfully built pmx-biobb 2023-07-03T12:47:53,883 Removed build tracker: '/tmp/pip-build-tracker-41ztbo24'