2023-07-05T22:56:12,244 Created temporary directory: /tmp/pip-build-tracker-71hw07pe 2023-07-05T22:56:12,247 Initialized build tracking at /tmp/pip-build-tracker-71hw07pe 2023-07-05T22:56:12,247 Created build tracker: /tmp/pip-build-tracker-71hw07pe 2023-07-05T22:56:12,247 Entered build tracker: /tmp/pip-build-tracker-71hw07pe 2023-07-05T22:56:12,249 Created temporary directory: /tmp/pip-wheel-3ihkmdoy 2023-07-05T22:56:12,257 Created temporary directory: /tmp/pip-ephem-wheel-cache-e4hux770 2023-07-05T22:56:12,309 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-05T22:56:12,317 2 location(s) to search for versions of gtdbtk: 2023-07-05T22:56:12,317 * https://pypi.org/simple/gtdbtk/ 2023-07-05T22:56:12,317 * https://www.piwheels.org/simple/gtdbtk/ 2023-07-05T22:56:12,318 Fetching project page and analyzing links: https://pypi.org/simple/gtdbtk/ 2023-07-05T22:56:12,319 Getting page https://pypi.org/simple/gtdbtk/ 2023-07-05T22:56:12,324 Found index url 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0.0.4b0 2023-07-05T22:56:12,553 Found link https://files.pythonhosted.org/packages/e7/21/7b30d68267c9ed81610a37c8fdac4b53f7090f9511d963a54754ec49d521/gtdbtk-0.0.4b1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b1 2023-07-05T22:56:12,553 Found link https://files.pythonhosted.org/packages/d1/f0/970559d46438a2004ccaa4199491188afc1bb13304fb899b26a3530ed841/gtdbtk-0.0.4b2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b2 2023-07-05T22:56:12,554 Found link https://files.pythonhosted.org/packages/e0/47/a9610df19e2bcf2782fc1ee29e5f85452b20a22d6f80581a23e3c0111c52/gtdbtk-0.0.4b3.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.4b3 2023-07-05T22:56:12,555 Found link https://files.pythonhosted.org/packages/bf/f1/ebd7ba5d9ac68fc00ec0f7a69b52111d945a70f836dd4ba975600b088a98/gtdbtk-0.0.5.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.0.5 2023-07-05T22:56:12,555 Found link 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https://files.pythonhosted.org/packages/0a/74/8cbe8afea3aa0f7d6b948210b8937f3edcf541b3212cae2ce6aa560276a9/gtdbtk-0.2.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.2.2 2023-07-05T22:56:12,562 Found link https://files.pythonhosted.org/packages/45/de/019db6634299b4086a49646891c9e99347e2908713baa14641e15687e4af/gtdbtk-0.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.0 2023-07-05T22:56:12,563 Found link https://files.pythonhosted.org/packages/6e/46/14181ed7f443fd8f70353250d09c94d2a2d867e68cc687167a8546ef4926/gtdbtk-0.3.1.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.1 2023-07-05T22:56:12,564 Found link https://files.pythonhosted.org/packages/91/64/06be7ada30b1895a1205feac310a92929a5e135b5821036632aa36d1354c/gtdbtk-0.3.2.tar.gz (from https://pypi.org/simple/gtdbtk/), version: 0.3.2 2023-07-05T22:56:12,564 Found link https://files.pythonhosted.org/packages/7d/90/a62620e2c5c5799d0271f097a83c356dd7d458bf85651da24a353e93d669/gtdbtk-0.3.3.tar.gz (from 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2023-07-05T22:56:12,586 Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/4a/cc/631e798a8f921fc6c504591472e34a04c2868f7ce7fdfc1b3c1cb5a81c05/gtdbtk-1.7.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,588 Found link https://files.pythonhosted.org/packages/a0/eb/859b20c3adeb96ca72f242bc31cd30319c2bd6e4d130c13aba0b76d2fe34/gtdbtk-1.7.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 1.7.0 2023-07-05T22:56:12,588 Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/c5/ac/fd59f08a268eab7c094ee1e9b14004c591c3477b11628c9e08aaad2bbaa6/gtdbtk-2.0.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,590 Found link https://files.pythonhosted.org/packages/7e/43/9b3c861f07fa420e9595fdf5f2261c0d1519a01f9e994b6445fb2e263d98/gtdbtk-2.0.0.tar.gz (from https://pypi.org/simple/gtdbtk/) 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2023-07-05T22:56:12,602 Found link https://files.pythonhosted.org/packages/51/6d/8a161d447e0d3db86dffe2c684272be3969254b056ef819a270a10e5bdbd/gtdbtk-2.2.3.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.3 2023-07-05T22:56:12,602 Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/a5/32/24f75f992865e4e5c761bb04a48ebc510dd91b9f04d5f1424eb5e4161ac4/gtdbtk-2.2.4-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,604 Found link https://files.pythonhosted.org/packages/70/ee/8ae2325f1f084a901575e9dffe8c8e7dae4bb89df809858983281177c0d1/gtdbtk-2.2.4.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.4 2023-07-05T22:56:12,604 Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/55/a0/82538604d4f39129c5632cf6d8b26a4b2993e9fd4fecc5f8ca6f0a118be0/gtdbtk-2.2.5-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,605 Found link https://files.pythonhosted.org/packages/29/7b/3aed07a21e615b1b3f0a2fbcf8c7032ffe50d45fd4ffba50f59a12aab20f/gtdbtk-2.2.5.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.5 2023-07-05T22:56:12,606 Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/f6/a2/877a99121b5cc2071ef2cff154c037418df0dce5d4512ed5eebcac3adff1/gtdbtk-2.2.6-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,607 Found link https://files.pythonhosted.org/packages/43/1d/f650449e249a128023732c98dc8f570d4033d52b81d64e442c0ea49175cc/gtdbtk-2.2.6.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.2.6 2023-07-05T22:56:12,608 Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/4e/be/72ff9d9e718e08898e8f9817ae91d06c8364b288d3c082026ddab01ba4e0/gtdbtk-2.3.0-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,609 Found link https://files.pythonhosted.org/packages/17/7f/8e724eb5b29d4a3d73d4530e8c9f18296a1f69fde82d634772ed6f0a267a/gtdbtk-2.3.0.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.3.0 2023-07-05T22:56:12,610 Skipping link: No binaries permitted for gtdbtk: https://files.pythonhosted.org/packages/34/25/c0306cf86abfa667f94f0d7591b251977b7f7af57ce613217873398bc0e5/gtdbtk-2.3.2-py3-none-any.whl (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,611 Found link https://files.pythonhosted.org/packages/5a/4b/2ed5ee6a35a0f9b4ec896e0b796aeb931824d82b9ca236665e5839b9a7a7/gtdbtk-2.3.2.tar.gz (from https://pypi.org/simple/gtdbtk/) (requires-python:>=3.6), version: 2.3.2 2023-07-05T22:56:12,612 Fetching project page and analyzing links: https://www.piwheels.org/simple/gtdbtk/ 2023-07-05T22:56:12,613 Getting page https://www.piwheels.org/simple/gtdbtk/ 2023-07-05T22:56:12,615 Found index url https://www.piwheels.org/simple/ 2023-07-05T22:56:12,836 Fetched page https://www.piwheels.org/simple/gtdbtk/ as text/html 2023-07-05T22:56:12,874 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.3.0-py3-none-any.whl#sha256=c67a62ad20275141b009be21cc871ec657a8ad737c61d0e6866b1b0b25778f2f (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,875 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.6-py3-none-any.whl#sha256=6f7c68179bd28368cf55f8f05f578c9690148531b6f2bba8106f0a7ff5705bc5 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,875 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.5-py3-none-any.whl#sha256=373f24c03ca4a533fc30378cc753ef810c9943df2fe1f361d39b11133869f81e (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,876 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.4-py3-none-any.whl#sha256=f20682a7cd468122eebde8ada2d62256fda4c792fb24359eb3cec4802065cfb3 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,876 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.3-py3-none-any.whl#sha256=06f93a7c81ad0d432168b3c6813c6b41c6c62c8c772d3f5a3f7a07026002e417 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,877 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.2-py3-none-any.whl#sha256=b2a2470befeb113d05b7e439d383b55fa4a7bf604d4de4b947eceb0cdd11feb9 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,877 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.2.1-py3-none-any.whl#sha256=2cf336d7981cf9e722bb1ab210ad70a0fdc421364d66f121ba0ed2764f49d831 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,878 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.1-py3-none-any.whl#sha256=9ab09353c8901bf41d042f5dd678b8e4a0b44bd88b9edf99c113095e719fa689 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,879 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-2.1.0-py3-none-any.whl#sha256=1a3aba4f0aa3916d66fa1b335bc75f3e4275f208aabcf8f52b16cc31c8a28251 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,879 Skipping link: No binaries permitted for gtdbtk: 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(from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,881 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.5.0-py3-none-any.whl#sha256=4d5f2ecca5c2f1e7b279ff1bba63edd378e64f1195c8da6f8d2fe1c37bb1a02e (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,882 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.1-py3-none-any.whl#sha256=5bf60e34c9532ee96689ca34330f5f4ad6d344bac28ebdd1925ee4d0326e4345 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,882 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.4.0-py3-none-any.whl#sha256=ead9eb6d9df9b31e5b067e8f9993ef52975d454ab8685e1df66d9e201ac5c596 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,883 Skipping link: No binaries permitted for gtdbtk: 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(from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,885 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.2-py3-none-any.whl#sha256=bcb2aff77a5de8e7ee657b155c07cef65e54ed4c69e75f792746eeb1a116d7d8 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,885 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.1-py3-none-any.whl#sha256=4f17b5e884096c03286b38720b63f262572ca3f8c6fcce36fb3a543aa1c45840 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,886 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-1.0.0-py3-none-any.whl#sha256=3206ab5f69c97d1c89cea39475c4e02c9af7414d02575fde530a36c099cb8f23 (from https://www.piwheels.org/simple/gtdbtk/) (requires-python:>=3.6) 2023-07-05T22:56:12,887 Skipping link: No binaries permitted for gtdbtk: 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Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.2-py3-none-any.whl#sha256=0f2f51b4c73c58071c0e693201460c6b3d67d4a956368ed7b2df1555a9a2d5e3 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,889 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.2.1-py3-none-any.whl#sha256=c3dda689b923a8788e648223335928c657b054fecd8eeb78e5e48e7be5cd3df4 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,890 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.6-py3-none-any.whl#sha256=dd5a03ce2b22ffe66b776fb405e95f4f7a70fed4ba1a7087db1de973f4e22fef (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,890 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.3-py3-none-any.whl#sha256=02c694c6199f0c5db1056131515f4272e703ea6beceffb16678ad3eb24358d8d (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,891 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.2-py3-none-any.whl#sha256=4b75117a7c332187dfb858bffe54fbadf2a9f39960fcc21d2bce0db59b6e114d (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,891 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.1-py3-none-any.whl#sha256=c971843754fb3c11f48ead52c04bc7bd86ddeab289fd362e9e24a9c0fd1f2879 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,892 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.1.0-py3-none-any.whl#sha256=3133231730578803c78146b89d575c44b9ac4419b598cbb7a3178c13e5175428 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,892 Skipping link: No binaries permitted for gtdbtk: 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Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b3-py3-none-any.whl#sha256=2d5b93346985d7186695de6a4dc010b9abf4e108ec438f449b74705eb7191fc1 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,895 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b2-py3-none-any.whl#sha256=177fdc2bb5e28ee60a931441956acff6b853871395a611bc1404c7f78a2a3f85 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,895 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b1-py3-none-any.whl#sha256=cffebc36f92b7947522a0e8d0fe11d9a7051a036352eb036ca90db5a14e591e1 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,896 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.4b0-py3-none-any.whl#sha256=1a96ec79753b589c69bb9c881bdedfc0aef683779cb926da47f22e85e77bb203 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,896 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.3-py3-none-any.whl#sha256=6670c151da83c393482600e07c463c74de77ab5776f88a4978d1b7defa71f852 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,897 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.2-py3-none-any.whl#sha256=dac945e10b775b7c8ab5f5b16635bd016d17aacb8a4ad77708ce67dc1b3f3ed6 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,897 Skipping link: No binaries permitted for gtdbtk: https://www.piwheels.org/simple/gtdbtk/gtdbtk-0.0.1-py3-none-any.whl#sha256=05d5353a17e20d9bc2a38528bb3b2e2e28d3188d4ebf69192793cd3e0d5199e6 (from https://www.piwheels.org/simple/gtdbtk/) 2023-07-05T22:56:12,898 Skipping link: not a file: https://www.piwheels.org/simple/gtdbtk/ 2023-07-05T22:56:12,899 Skipping link: not a file: https://pypi.org/simple/gtdbtk/ 2023-07-05T22:56:12,947 Given no hashes to check 1 links for project 'gtdbtk': discarding no candidates 2023-07-05T22:56:12,979 Collecting gtdbtk==2.3.2 2023-07-05T22:56:12,983 Created temporary directory: /tmp/pip-unpack-z7dpngr1 2023-07-05T22:56:13,335 Downloading gtdbtk-2.3.2.tar.gz (1.7 MB) 2023-07-05T22:56:15,148 Added gtdbtk==2.3.2 from https://files.pythonhosted.org/packages/5a/4b/2ed5ee6a35a0f9b4ec896e0b796aeb931824d82b9ca236665e5839b9a7a7/gtdbtk-2.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-71hw07pe' 2023-07-05T22:56:15,153 Running setup.py (path:/tmp/pip-wheel-3ihkmdoy/gtdbtk_704e2cb15c7745db8fb84a9e7f982e9b/setup.py) egg_info for package gtdbtk 2023-07-05T22:56:15,155 Created temporary directory: /tmp/pip-pip-egg-info-3i32rikk 2023-07-05T22:56:15,155 Preparing metadata (setup.py): started 2023-07-05T22:56:15,159 Running command python setup.py egg_info 2023-07-05T22:56:16,718 running egg_info 2023-07-05T22:56:16,721 creating /tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info 2023-07-05T22:56:16,785 writing /tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info/PKG-INFO 2023-07-05T22:56:16,790 writing dependency_links to /tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info/dependency_links.txt 2023-07-05T22:56:16,793 writing entry points to /tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info/entry_points.txt 2023-07-05T22:56:16,796 writing requirements to /tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info/requires.txt 2023-07-05T22:56:16,798 writing top-level names to /tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info/top_level.txt 2023-07-05T22:56:16,801 writing manifest file '/tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info/SOURCES.txt' 2023-07-05T22:56:17,034 reading manifest file '/tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info/SOURCES.txt' 2023-07-05T22:56:17,037 adding license file 'LICENSE' 2023-07-05T22:56:17,050 writing manifest file '/tmp/pip-pip-egg-info-3i32rikk/gtdbtk.egg-info/SOURCES.txt' 2023-07-05T22:56:17,170 Preparing metadata (setup.py): finished with status 'done' 2023-07-05T22:56:17,184 Source in /tmp/pip-wheel-3ihkmdoy/gtdbtk_704e2cb15c7745db8fb84a9e7f982e9b has version 2.3.2, which satisfies requirement gtdbtk==2.3.2 from https://files.pythonhosted.org/packages/5a/4b/2ed5ee6a35a0f9b4ec896e0b796aeb931824d82b9ca236665e5839b9a7a7/gtdbtk-2.3.2.tar.gz 2023-07-05T22:56:17,186 Removed gtdbtk==2.3.2 from https://files.pythonhosted.org/packages/5a/4b/2ed5ee6a35a0f9b4ec896e0b796aeb931824d82b9ca236665e5839b9a7a7/gtdbtk-2.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-71hw07pe' 2023-07-05T22:56:17,202 Created temporary directory: /tmp/pip-unpack-_o3ap7oz 2023-07-05T22:56:17,204 Building wheels for collected packages: gtdbtk 2023-07-05T22:56:17,213 Created temporary directory: /tmp/pip-wheel-4s1837s8 2023-07-05T22:56:17,213 Building wheel for gtdbtk (setup.py): started 2023-07-05T22:56:17,215 Destination directory: /tmp/pip-wheel-4s1837s8 2023-07-05T22:56:17,216 Running command python setup.py bdist_wheel 2023-07-05T22:56:18,805 running bdist_wheel 2023-07-05T22:56:19,525 running build 2023-07-05T22:56:19,525 running build_py 2023-07-05T22:56:19,600 creating build 2023-07-05T22:56:19,601 creating build/lib 2023-07-05T22:56:19,602 creating build/lib/gtdbtk 2023-07-05T22:56:19,605 copying gtdbtk/main.py -> build/lib/gtdbtk 2023-07-05T22:56:19,613 copying gtdbtk/ani_rep.py -> build/lib/gtdbtk 2023-07-05T22:56:19,617 copying gtdbtk/infer_ranks.py -> build/lib/gtdbtk 2023-07-05T22:56:19,622 copying gtdbtk/reroot_tree.py -> build/lib/gtdbtk 2023-07-05T22:56:19,626 copying gtdbtk/__init__.py -> build/lib/gtdbtk 2023-07-05T22:56:19,630 copying gtdbtk/trim_msa.py -> build/lib/gtdbtk 2023-07-05T22:56:19,635 copying gtdbtk/misc.py -> build/lib/gtdbtk 2023-07-05T22:56:19,639 copying gtdbtk/classify.py -> build/lib/gtdbtk 2023-07-05T22:56:19,650 copying gtdbtk/split.py -> build/lib/gtdbtk 2023-07-05T22:56:19,655 copying gtdbtk/exceptions.py -> build/lib/gtdbtk 2023-07-05T22:56:19,659 copying gtdbtk/relative_distance.py -> build/lib/gtdbtk 2023-07-05T22:56:19,665 copying gtdbtk/decorate.py -> build/lib/gtdbtk 2023-07-05T22:56:19,671 copying gtdbtk/cli.py -> build/lib/gtdbtk 2023-07-05T22:56:19,676 copying gtdbtk/markers.py -> build/lib/gtdbtk 2023-07-05T22:56:19,682 copying gtdbtk/tools.py -> build/lib/gtdbtk 2023-07-05T22:56:19,687 copying gtdbtk/ani_screen.py -> build/lib/gtdbtk 2023-07-05T22:56:19,692 copying gtdbtk/__main__.py -> build/lib/gtdbtk 2023-07-05T22:56:19,697 creating build/lib/tests 2023-07-05T22:56:19,699 copying tests/test_classify.py -> build/lib/tests 2023-07-05T22:56:19,704 copying tests/common.py -> build/lib/tests 2023-07-05T22:56:19,707 copying tests/__init__.py -> build/lib/tests 2023-07-05T22:56:19,710 copying tests/test_cli.py -> build/lib/tests 2023-07-05T22:56:19,717 creating build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,719 copying gtdbtk/biolib_lite/seq_io.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,724 copying gtdbtk/biolib_lite/common.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,728 copying gtdbtk/biolib_lite/__init__.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,732 copying gtdbtk/biolib_lite/logger.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,736 copying gtdbtk/biolib_lite/newick.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,741 copying gtdbtk/biolib_lite/taxonomy.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,746 copying gtdbtk/biolib_lite/exceptions.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,750 copying gtdbtk/biolib_lite/prodigal_biolib.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,755 copying gtdbtk/biolib_lite/parallel.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,759 copying gtdbtk/biolib_lite/custom_help_formatter.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,763 copying gtdbtk/biolib_lite/execute.py -> build/lib/gtdbtk/biolib_lite 2023-07-05T22:56:19,768 creating build/lib/gtdbtk/model 2023-07-05T22:56:19,770 copying gtdbtk/model/__init__.py -> build/lib/gtdbtk/model 2023-07-05T22:56:19,774 copying gtdbtk/model/enum.py -> build/lib/gtdbtk/model 2023-07-05T22:56:19,779 creating build/lib/gtdbtk/external 2023-07-05T22:56:19,781 copying gtdbtk/external/tigrfam_search.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,786 copying gtdbtk/external/__init__.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,789 copying gtdbtk/external/pplacer.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,793 copying gtdbtk/external/mash.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,798 copying gtdbtk/external/prodigal.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,803 copying gtdbtk/external/fasttree.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,807 copying gtdbtk/external/hmm_aligner.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,812 copying gtdbtk/external/fastani.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,817 copying gtdbtk/external/pfam_search.py -> build/lib/gtdbtk/external 2023-07-05T22:56:19,824 creating build/lib/gtdbtk/files 2023-07-05T22:56:19,825 copying gtdbtk/files/red_dict.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,829 copying gtdbtk/files/classify_summary.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,834 copying gtdbtk/files/__init__.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,837 copying gtdbtk/files/marker_info.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,841 copying gtdbtk/files/tree_mapping.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,845 copying gtdbtk/files/missing_genomes.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,849 copying gtdbtk/files/gtdb_radii.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,853 copying gtdbtk/files/batchfile.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,857 copying gtdbtk/files/stage_logger.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,862 copying gtdbtk/files/pplacer_classification.py -> build/lib/gtdbtk/files 2023-07-05T22:56:19,869 creating build/lib/gtdbtk/pipeline 2023-07-05T22:56:19,871 copying gtdbtk/pipeline/__init__.py -> build/lib/gtdbtk/pipeline 2023-07-05T22:56:19,876 copying gtdbtk/pipeline/align.py -> build/lib/gtdbtk/pipeline 2023-07-05T22:56:19,881 copying gtdbtk/pipeline/export_msa.py -> build/lib/gtdbtk/pipeline 2023-07-05T22:56:19,887 creating build/lib/gtdbtk/config 2023-07-05T22:56:19,890 copying gtdbtk/config/common.py -> build/lib/gtdbtk/config 2023-07-05T22:56:19,896 copying gtdbtk/config/__init__.py -> build/lib/gtdbtk/config 2023-07-05T22:56:19,899 copying gtdbtk/config/output.py -> build/lib/gtdbtk/config 2023-07-05T22:56:19,905 creating build/lib/gtdbtk/external/pypfam 2023-07-05T22:56:19,908 copying gtdbtk/external/pypfam/__init__.py -> build/lib/gtdbtk/external/pypfam 2023-07-05T22:56:19,914 creating build/lib/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:19,916 copying gtdbtk/external/pypfam/HMM/__init__.py -> build/lib/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:19,920 copying gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/lib/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:19,924 copying gtdbtk/external/pypfam/HMM/HMMResults.py -> build/lib/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:19,929 copying gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/lib/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:19,934 copying gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/lib/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:19,940 copying gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/lib/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:19,945 creating build/lib/gtdbtk/external/pypfam/Scan 2023-07-05T22:56:19,946 copying gtdbtk/external/pypfam/Scan/__init__.py -> build/lib/gtdbtk/external/pypfam/Scan 2023-07-05T22:56:19,950 copying gtdbtk/external/pypfam/Scan/PfamScan.py -> build/lib/gtdbtk/external/pypfam/Scan 2023-07-05T22:56:19,956 creating build/lib/gtdbtk/files/prodigal 2023-07-05T22:56:19,958 copying gtdbtk/files/prodigal/__init__.py -> build/lib/gtdbtk/files/prodigal 2023-07-05T22:56:19,961 copying gtdbtk/files/prodigal/tln_table_summary.py -> build/lib/gtdbtk/files/prodigal 2023-07-05T22:56:19,965 copying gtdbtk/files/prodigal/tln_table.py -> build/lib/gtdbtk/files/prodigal 2023-07-05T22:56:19,970 creating build/lib/gtdbtk/files/marker 2023-07-05T22:56:19,972 copying gtdbtk/files/marker/__init__.py -> build/lib/gtdbtk/files/marker 2023-07-05T22:56:19,975 copying gtdbtk/files/marker/tophit.py -> build/lib/gtdbtk/files/marker 2023-07-05T22:56:19,979 copying gtdbtk/files/marker/copy_number.py -> build/lib/gtdbtk/files/marker 2023-07-05T22:56:19,986 creating build/lib/tests/test_gtdbtk 2023-07-05T22:56:19,987 copying tests/test_gtdbtk/__init__.py -> build/lib/tests/test_gtdbtk 2023-07-05T22:56:19,991 copying tests/test_gtdbtk/test_markers.py -> build/lib/tests/test_gtdbtk 2023-07-05T22:56:19,994 copying tests/test_gtdbtk/test_trim_msa.py -> build/lib/tests/test_gtdbtk 2023-07-05T22:56:19,998 copying tests/test_gtdbtk/test_tools.py -> build/lib/tests/test_gtdbtk 2023-07-05T22:56:20,003 copying tests/test_gtdbtk/test__main__.py -> build/lib/tests/test_gtdbtk 2023-07-05T22:56:20,008 copying tests/test_gtdbtk/test_main.py -> build/lib/tests/test_gtdbtk 2023-07-05T22:56:20,014 creating build/lib/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:20,016 copying tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/lib/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:20,019 copying tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/lib/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:20,023 copying tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/lib/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:20,027 copying tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/lib/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:20,030 copying tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/lib/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:20,035 creating build/lib/tests/test_gtdbtk/test_files 2023-07-05T22:56:20,037 copying tests/test_gtdbtk/test_files/__init__.py -> build/lib/tests/test_gtdbtk/test_files 2023-07-05T22:56:20,042 creating build/lib/tests/test_gtdbtk/test_external 2023-07-05T22:56:20,043 copying tests/test_gtdbtk/test_external/__init__.py -> build/lib/tests/test_gtdbtk/test_external 2023-07-05T22:56:20,047 copying tests/test_gtdbtk/test_external/test_fastani.py -> build/lib/tests/test_gtdbtk/test_external 2023-07-05T22:56:20,051 copying tests/test_gtdbtk/test_external/test_fasttree.py -> build/lib/tests/test_gtdbtk/test_external 2023-07-05T22:56:20,056 creating build/lib/tests/test_gtdbtk/test_files/test_marker 2023-07-05T22:56:20,058 copying tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_marker 2023-07-05T22:56:20,062 copying tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/lib/tests/test_gtdbtk/test_files/test_marker 2023-07-05T22:56:20,066 copying tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/lib/tests/test_gtdbtk/test_files/test_marker 2023-07-05T22:56:20,072 creating build/lib/tests/test_gtdbtk/test_files/test_prodigal 2023-07-05T22:56:20,074 copying tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal 2023-07-05T22:56:20,077 copying tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/lib/tests/test_gtdbtk/test_files/test_prodigal 2023-07-05T22:56:20,086 creating build/lib/gtdbtk/tests 2023-07-05T22:56:20,087 creating build/lib/gtdbtk/tests/data 2023-07-05T22:56:20,089 creating build/lib/gtdbtk/tests/data/genomes 2023-07-05T22:56:20,091 copying gtdbtk/tests/data/genomes/genome_2.fna -> build/lib/gtdbtk/tests/data/genomes 2023-07-05T22:56:20,160 copying gtdbtk/tests/data/genomes/genome_3.fna -> build/lib/gtdbtk/tests/data/genomes 2023-07-05T22:56:20,228 copying gtdbtk/tests/data/genomes/genome_1.fna -> build/lib/gtdbtk/tests/data/genomes 2023-07-05T22:56:20,469 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-05T22:56:20,469 !! 2023-07-05T22:56:20,470 ******************************************************************************** 2023-07-05T22:56:20,471 Please avoid running ``setup.py`` directly. 2023-07-05T22:56:20,471 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-05T22:56:20,471 other standards-based tools. 2023-07-05T22:56:20,472 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-05T22:56:20,472 ******************************************************************************** 2023-07-05T22:56:20,473 !! 2023-07-05T22:56:20,473 self.initialize_options() 2023-07-05T22:56:20,537 installing to build/bdist.linux-armv7l/wheel 2023-07-05T22:56:20,538 running install 2023-07-05T22:56:20,598 running install_lib 2023-07-05T22:56:20,669 creating build/bdist.linux-armv7l 2023-07-05T22:56:20,670 creating build/bdist.linux-armv7l/wheel 2023-07-05T22:56:20,674 creating build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,676 copying build/lib/gtdbtk/main.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,683 copying build/lib/gtdbtk/ani_rep.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,687 copying build/lib/gtdbtk/infer_ranks.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,693 copying build/lib/gtdbtk/reroot_tree.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,699 creating build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,700 copying build/lib/gtdbtk/biolib_lite/seq_io.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,705 copying build/lib/gtdbtk/biolib_lite/common.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,709 copying build/lib/gtdbtk/biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,712 copying build/lib/gtdbtk/biolib_lite/logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,717 copying build/lib/gtdbtk/biolib_lite/newick.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,720 copying build/lib/gtdbtk/biolib_lite/taxonomy.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,726 copying build/lib/gtdbtk/biolib_lite/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,729 copying build/lib/gtdbtk/biolib_lite/prodigal_biolib.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,734 copying build/lib/gtdbtk/biolib_lite/parallel.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,739 copying build/lib/gtdbtk/biolib_lite/custom_help_formatter.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,743 copying build/lib/gtdbtk/biolib_lite/execute.py -> build/bdist.linux-armv7l/wheel/gtdbtk/biolib_lite 2023-07-05T22:56:20,747 copying build/lib/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,752 copying build/lib/gtdbtk/trim_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,757 copying build/lib/gtdbtk/misc.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,763 creating build/bdist.linux-armv7l/wheel/gtdbtk/model 2023-07-05T22:56:20,766 copying build/lib/gtdbtk/model/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model 2023-07-05T22:56:20,769 copying build/lib/gtdbtk/model/enum.py -> build/bdist.linux-armv7l/wheel/gtdbtk/model 2023-07-05T22:56:20,775 creating build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,777 copying build/lib/gtdbtk/external/tigrfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,782 copying build/lib/gtdbtk/external/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,786 copying build/lib/gtdbtk/external/pplacer.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,792 creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam 2023-07-05T22:56:20,796 creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:20,798 copying build/lib/gtdbtk/external/pypfam/HMM/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:20,802 copying build/lib/gtdbtk/external/pypfam/HMM/HMMSequence.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:20,806 copying build/lib/gtdbtk/external/pypfam/HMM/HMMResults.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:20,811 copying build/lib/gtdbtk/external/pypfam/HMM/HMMUnit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:20,816 copying build/lib/gtdbtk/external/pypfam/HMM/HMMResultsIO.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:20,821 copying build/lib/gtdbtk/external/pypfam/HMM/HMMMatch.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/HMM 2023-07-05T22:56:20,826 copying build/lib/gtdbtk/external/pypfam/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam 2023-07-05T22:56:20,830 creating build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan 2023-07-05T22:56:20,833 copying build/lib/gtdbtk/external/pypfam/Scan/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan 2023-07-05T22:56:20,837 copying build/lib/gtdbtk/external/pypfam/Scan/PfamScan.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external/pypfam/Scan 2023-07-05T22:56:20,843 copying build/lib/gtdbtk/external/mash.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,849 copying build/lib/gtdbtk/external/prodigal.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,854 copying build/lib/gtdbtk/external/fasttree.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,859 copying build/lib/gtdbtk/external/hmm_aligner.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,864 copying build/lib/gtdbtk/external/fastani.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,869 copying build/lib/gtdbtk/external/pfam_search.py -> build/bdist.linux-armv7l/wheel/gtdbtk/external 2023-07-05T22:56:20,873 copying build/lib/gtdbtk/classify.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,883 copying build/lib/gtdbtk/split.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,888 copying build/lib/gtdbtk/exceptions.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,894 creating build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,896 copying build/lib/gtdbtk/files/red_dict.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,899 copying build/lib/gtdbtk/files/classify_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,904 copying build/lib/gtdbtk/files/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,907 copying build/lib/gtdbtk/files/marker_info.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,912 creating build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal 2023-07-05T22:56:20,913 copying build/lib/gtdbtk/files/prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal 2023-07-05T22:56:20,916 copying build/lib/gtdbtk/files/prodigal/tln_table_summary.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal 2023-07-05T22:56:20,920 copying build/lib/gtdbtk/files/prodigal/tln_table.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/prodigal 2023-07-05T22:56:20,923 copying build/lib/gtdbtk/files/tree_mapping.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,927 copying build/lib/gtdbtk/files/missing_genomes.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,930 copying build/lib/gtdbtk/files/gtdb_radii.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,934 copying build/lib/gtdbtk/files/batchfile.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,937 copying build/lib/gtdbtk/files/stage_logger.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,942 copying build/lib/gtdbtk/files/pplacer_classification.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files 2023-07-05T22:56:20,946 creating build/bdist.linux-armv7l/wheel/gtdbtk/files/marker 2023-07-05T22:56:20,948 copying build/lib/gtdbtk/files/marker/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker 2023-07-05T22:56:20,951 copying build/lib/gtdbtk/files/marker/tophit.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker 2023-07-05T22:56:20,956 copying build/lib/gtdbtk/files/marker/copy_number.py -> build/bdist.linux-armv7l/wheel/gtdbtk/files/marker 2023-07-05T22:56:20,960 copying build/lib/gtdbtk/relative_distance.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,965 copying build/lib/gtdbtk/decorate.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,970 copying build/lib/gtdbtk/cli.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,975 copying build/lib/gtdbtk/markers.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,980 copying build/lib/gtdbtk/tools.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,985 copying build/lib/gtdbtk/ani_screen.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:20,989 creating build/bdist.linux-armv7l/wheel/gtdbtk/pipeline 2023-07-05T22:56:20,991 copying build/lib/gtdbtk/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline 2023-07-05T22:56:20,994 copying build/lib/gtdbtk/pipeline/align.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline 2023-07-05T22:56:20,998 copying build/lib/gtdbtk/pipeline/export_msa.py -> build/bdist.linux-armv7l/wheel/gtdbtk/pipeline 2023-07-05T22:56:21,003 creating build/bdist.linux-armv7l/wheel/gtdbtk/config 2023-07-05T22:56:21,005 copying build/lib/gtdbtk/config/common.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config 2023-07-05T22:56:21,010 copying build/lib/gtdbtk/config/__init__.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config 2023-07-05T22:56:21,013 copying build/lib/gtdbtk/config/output.py -> build/bdist.linux-armv7l/wheel/gtdbtk/config 2023-07-05T22:56:21,017 copying build/lib/gtdbtk/__main__.py -> build/bdist.linux-armv7l/wheel/gtdbtk 2023-07-05T22:56:21,021 creating build/bdist.linux-armv7l/wheel/gtdbtk/tests 2023-07-05T22:56:21,024 creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data 2023-07-05T22:56:21,027 creating build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes 2023-07-05T22:56:21,029 copying build/lib/gtdbtk/tests/data/genomes/genome_2.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes 2023-07-05T22:56:21,098 copying build/lib/gtdbtk/tests/data/genomes/genome_3.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes 2023-07-05T22:56:21,159 copying build/lib/gtdbtk/tests/data/genomes/genome_1.fna -> build/bdist.linux-armv7l/wheel/gtdbtk/tests/data/genomes 2023-07-05T22:56:21,288 creating build/bdist.linux-armv7l/wheel/tests 2023-07-05T22:56:21,290 copying build/lib/tests/test_classify.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-05T22:56:21,294 copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-05T22:56:21,298 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-05T22:56:21,303 creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk 2023-07-05T22:56:21,306 creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:21,309 copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:21,314 copying build/lib/tests/test_gtdbtk/test_biolib_lite/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:21,317 copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_seq_io.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:21,322 copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_newick.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:21,326 copying build/lib/tests/test_gtdbtk/test_biolib_lite/test_common.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_biolib_lite 2023-07-05T22:56:21,330 copying build/lib/tests/test_gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk 2023-07-05T22:56:21,334 copying build/lib/tests/test_gtdbtk/test_markers.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk 2023-07-05T22:56:21,337 copying build/lib/tests/test_gtdbtk/test_trim_msa.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk 2023-07-05T22:56:21,342 creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files 2023-07-05T22:56:21,344 copying build/lib/tests/test_gtdbtk/test_files/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files 2023-07-05T22:56:21,348 creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker 2023-07-05T22:56:21,350 copying build/lib/tests/test_gtdbtk/test_files/test_marker/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker 2023-07-05T22:56:21,354 copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_copy_number.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker 2023-07-05T22:56:21,358 copying build/lib/tests/test_gtdbtk/test_files/test_marker/test_tophit.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_marker 2023-07-05T22:56:21,363 creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal 2023-07-05T22:56:21,365 copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal 2023-07-05T22:56:21,368 copying build/lib/tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_files/test_prodigal 2023-07-05T22:56:21,371 copying build/lib/tests/test_gtdbtk/test_tools.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk 2023-07-05T22:56:21,375 copying build/lib/tests/test_gtdbtk/test__main__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk 2023-07-05T22:56:21,381 creating build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external 2023-07-05T22:56:21,383 copying build/lib/tests/test_gtdbtk/test_external/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external 2023-07-05T22:56:21,386 copying build/lib/tests/test_gtdbtk/test_external/test_fastani.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external 2023-07-05T22:56:21,390 copying build/lib/tests/test_gtdbtk/test_external/test_fasttree.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk/test_external 2023-07-05T22:56:21,394 copying build/lib/tests/test_gtdbtk/test_main.py -> build/bdist.linux-armv7l/wheel/tests/test_gtdbtk 2023-07-05T22:56:21,398 copying build/lib/tests/test_cli.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-05T22:56:21,402 running install_data 2023-07-05T22:56:21,467 creating build/bdist.linux-armv7l/wheel/gtdbtk-2.3.2.data 2023-07-05T22:56:21,467 creating build/bdist.linux-armv7l/wheel/gtdbtk-2.3.2.data/data 2023-07-05T22:56:21,470 copying LICENSE -> build/bdist.linux-armv7l/wheel/gtdbtk-2.3.2.data/data/ 2023-07-05T22:56:21,475 running install_egg_info 2023-07-05T22:56:21,635 running egg_info 2023-07-05T22:56:21,698 writing gtdbtk.egg-info/PKG-INFO 2023-07-05T22:56:21,702 writing dependency_links to gtdbtk.egg-info/dependency_links.txt 2023-07-05T22:56:21,706 writing entry points to gtdbtk.egg-info/entry_points.txt 2023-07-05T22:56:21,709 writing requirements to gtdbtk.egg-info/requires.txt 2023-07-05T22:56:21,712 writing top-level names to gtdbtk.egg-info/top_level.txt 2023-07-05T22:56:21,813 reading manifest file 'gtdbtk.egg-info/SOURCES.txt' 2023-07-05T22:56:21,823 adding license file 'LICENSE' 2023-07-05T22:56:21,840 writing manifest file 'gtdbtk.egg-info/SOURCES.txt' 2023-07-05T22:56:21,843 Copying gtdbtk.egg-info to build/bdist.linux-armv7l/wheel/gtdbtk-2.3.2-py3.7.egg-info 2023-07-05T22:56:21,867 running install_scripts 2023-07-05T22:56:21,907 creating build/bdist.linux-armv7l/wheel/gtdbtk-2.3.2.dist-info/WHEEL 2023-07-05T22:56:21,913 creating '/tmp/pip-wheel-4s1837s8/gtdbtk-2.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-05T22:56:21,919 adding 'gtdbtk/__init__.py' 2023-07-05T22:56:21,923 adding 'gtdbtk/__main__.py' 2023-07-05T22:56:21,927 adding 'gtdbtk/ani_rep.py' 2023-07-05T22:56:21,931 adding 'gtdbtk/ani_screen.py' 2023-07-05T22:56:21,958 adding 'gtdbtk/classify.py' 2023-07-05T22:56:21,966 adding 'gtdbtk/cli.py' 2023-07-05T22:56:21,972 adding 'gtdbtk/decorate.py' 2023-07-05T22:56:21,975 adding 'gtdbtk/exceptions.py' 2023-07-05T22:56:21,979 adding 'gtdbtk/infer_ranks.py' 2023-07-05T22:56:21,991 adding 'gtdbtk/main.py' 2023-07-05T22:56:22,002 adding 'gtdbtk/markers.py' 2023-07-05T22:56:22,006 adding 'gtdbtk/misc.py' 2023-07-05T22:56:22,012 adding 'gtdbtk/relative_distance.py' 2023-07-05T22:56:22,015 adding 'gtdbtk/reroot_tree.py' 2023-07-05T22:56:22,021 adding 'gtdbtk/split.py' 2023-07-05T22:56:22,027 adding 'gtdbtk/tools.py' 2023-07-05T22:56:22,032 adding 'gtdbtk/trim_msa.py' 2023-07-05T22:56:22,035 adding 'gtdbtk/biolib_lite/__init__.py' 2023-07-05T22:56:22,039 adding 'gtdbtk/biolib_lite/common.py' 2023-07-05T22:56:22,042 adding 'gtdbtk/biolib_lite/custom_help_formatter.py' 2023-07-05T22:56:22,045 adding 'gtdbtk/biolib_lite/exceptions.py' 2023-07-05T22:56:22,048 adding 'gtdbtk/biolib_lite/execute.py' 2023-07-05T22:56:22,052 adding 'gtdbtk/biolib_lite/logger.py' 2023-07-05T22:56:22,055 adding 'gtdbtk/biolib_lite/newick.py' 2023-07-05T22:56:22,058 adding 'gtdbtk/biolib_lite/parallel.py' 2023-07-05T22:56:22,064 adding 'gtdbtk/biolib_lite/prodigal_biolib.py' 2023-07-05T22:56:22,067 adding 'gtdbtk/biolib_lite/seq_io.py' 2023-07-05T22:56:22,077 adding 'gtdbtk/biolib_lite/taxonomy.py' 2023-07-05T22:56:22,081 adding 'gtdbtk/config/__init__.py' 2023-07-05T22:56:22,086 adding 'gtdbtk/config/common.py' 2023-07-05T22:56:22,089 adding 'gtdbtk/config/output.py' 2023-07-05T22:56:22,093 adding 'gtdbtk/external/__init__.py' 2023-07-05T22:56:22,098 adding 'gtdbtk/external/fastani.py' 2023-07-05T22:56:22,101 adding 'gtdbtk/external/fasttree.py' 2023-07-05T22:56:22,106 adding 'gtdbtk/external/hmm_aligner.py' 2023-07-05T22:56:22,111 adding 'gtdbtk/external/mash.py' 2023-07-05T22:56:22,114 adding 'gtdbtk/external/pfam_search.py' 2023-07-05T22:56:22,118 adding 'gtdbtk/external/pplacer.py' 2023-07-05T22:56:22,123 adding 'gtdbtk/external/prodigal.py' 2023-07-05T22:56:22,127 adding 'gtdbtk/external/tigrfam_search.py' 2023-07-05T22:56:22,130 adding 'gtdbtk/external/pypfam/__init__.py' 2023-07-05T22:56:22,134 adding 'gtdbtk/external/pypfam/HMM/HMMMatch.py' 2023-07-05T22:56:22,137 adding 'gtdbtk/external/pypfam/HMM/HMMResults.py' 2023-07-05T22:56:22,143 adding 'gtdbtk/external/pypfam/HMM/HMMResultsIO.py' 2023-07-05T22:56:22,147 adding 'gtdbtk/external/pypfam/HMM/HMMSequence.py' 2023-07-05T22:56:22,149 adding 'gtdbtk/external/pypfam/HMM/HMMUnit.py' 2023-07-05T22:56:22,152 adding 'gtdbtk/external/pypfam/HMM/__init__.py' 2023-07-05T22:56:22,159 adding 'gtdbtk/external/pypfam/Scan/PfamScan.py' 2023-07-05T22:56:22,161 adding 'gtdbtk/external/pypfam/Scan/__init__.py' 2023-07-05T22:56:22,165 adding 'gtdbtk/files/__init__.py' 2023-07-05T22:56:22,168 adding 'gtdbtk/files/batchfile.py' 2023-07-05T22:56:22,171 adding 'gtdbtk/files/classify_summary.py' 2023-07-05T22:56:22,174 adding 'gtdbtk/files/gtdb_radii.py' 2023-07-05T22:56:22,177 adding 'gtdbtk/files/marker_info.py' 2023-07-05T22:56:22,180 adding 'gtdbtk/files/missing_genomes.py' 2023-07-05T22:56:22,183 adding 'gtdbtk/files/pplacer_classification.py' 2023-07-05T22:56:22,186 adding 'gtdbtk/files/red_dict.py' 2023-07-05T22:56:22,189 adding 'gtdbtk/files/stage_logger.py' 2023-07-05T22:56:22,193 adding 'gtdbtk/files/tree_mapping.py' 2023-07-05T22:56:22,196 adding 'gtdbtk/files/marker/__init__.py' 2023-07-05T22:56:22,200 adding 'gtdbtk/files/marker/copy_number.py' 2023-07-05T22:56:22,204 adding 'gtdbtk/files/marker/tophit.py' 2023-07-05T22:56:22,207 adding 'gtdbtk/files/prodigal/__init__.py' 2023-07-05T22:56:22,210 adding 'gtdbtk/files/prodigal/tln_table.py' 2023-07-05T22:56:22,213 adding 'gtdbtk/files/prodigal/tln_table_summary.py' 2023-07-05T22:56:22,216 adding 'gtdbtk/model/__init__.py' 2023-07-05T22:56:22,218 adding 'gtdbtk/model/enum.py' 2023-07-05T22:56:22,222 adding 'gtdbtk/pipeline/__init__.py' 2023-07-05T22:56:22,225 adding 'gtdbtk/pipeline/align.py' 2023-07-05T22:56:22,228 adding 'gtdbtk/pipeline/export_msa.py' 2023-07-05T22:56:26,196 adding 'gtdbtk/tests/data/genomes/genome_1.fna' 2023-07-05T22:56:28,011 adding 'gtdbtk/tests/data/genomes/genome_2.fna' 2023-07-05T22:56:29,663 adding 'gtdbtk/tests/data/genomes/genome_3.fna' 2023-07-05T22:56:29,704 adding 'gtdbtk-2.3.2.data/data/LICENSE' 2023-07-05T22:56:29,711 adding 'tests/__init__.py' 2023-07-05T22:56:29,714 adding 'tests/common.py' 2023-07-05T22:56:29,717 adding 'tests/test_classify.py' 2023-07-05T22:56:29,721 adding 'tests/test_cli.py' 2023-07-05T22:56:29,725 adding 'tests/test_gtdbtk/__init__.py' 2023-07-05T22:56:29,729 adding 'tests/test_gtdbtk/test__main__.py' 2023-07-05T22:56:29,734 adding 'tests/test_gtdbtk/test_main.py' 2023-07-05T22:56:29,737 adding 'tests/test_gtdbtk/test_markers.py' 2023-07-05T22:56:29,740 adding 'tests/test_gtdbtk/test_tools.py' 2023-07-05T22:56:29,743 adding 'tests/test_gtdbtk/test_trim_msa.py' 2023-07-05T22:56:29,747 adding 'tests/test_gtdbtk/test_biolib_lite/__init__.py' 2023-07-05T22:56:29,750 adding 'tests/test_gtdbtk/test_biolib_lite/test_common.py' 2023-07-05T22:56:29,753 adding 'tests/test_gtdbtk/test_biolib_lite/test_newick.py' 2023-07-05T22:56:29,755 adding 'tests/test_gtdbtk/test_biolib_lite/test_seq_io.py' 2023-07-05T22:56:29,758 adding 'tests/test_gtdbtk/test_biolib_lite/test_taxonomy.py' 2023-07-05T22:56:29,762 adding 'tests/test_gtdbtk/test_external/__init__.py' 2023-07-05T22:56:29,765 adding 'tests/test_gtdbtk/test_external/test_fastani.py' 2023-07-05T22:56:29,768 adding 'tests/test_gtdbtk/test_external/test_fasttree.py' 2023-07-05T22:56:29,772 adding 'tests/test_gtdbtk/test_files/__init__.py' 2023-07-05T22:56:29,775 adding 'tests/test_gtdbtk/test_files/test_marker/__init__.py' 2023-07-05T22:56:29,779 adding 'tests/test_gtdbtk/test_files/test_marker/test_copy_number.py' 2023-07-05T22:56:29,783 adding 'tests/test_gtdbtk/test_files/test_marker/test_tophit.py' 2023-07-05T22:56:29,787 adding 'tests/test_gtdbtk/test_files/test_prodigal/__init__.py' 2023-07-05T22:56:29,790 adding 'tests/test_gtdbtk/test_files/test_prodigal/test_tln_table_summary.py' 2023-07-05T22:56:29,804 adding 'gtdbtk-2.3.2.dist-info/LICENSE' 2023-07-05T22:56:29,808 adding 'gtdbtk-2.3.2.dist-info/METADATA' 2023-07-05T22:56:29,811 adding 'gtdbtk-2.3.2.dist-info/WHEEL' 2023-07-05T22:56:29,813 adding 'gtdbtk-2.3.2.dist-info/entry_points.txt' 2023-07-05T22:56:29,815 adding 'gtdbtk-2.3.2.dist-info/top_level.txt' 2023-07-05T22:56:29,819 adding 'gtdbtk-2.3.2.dist-info/RECORD' 2023-07-05T22:56:29,896 removing build/bdist.linux-armv7l/wheel 2023-07-05T22:56:30,124 Building wheel for gtdbtk (setup.py): finished with status 'done' 2023-07-05T22:56:30,185 Created wheel for gtdbtk: filename=gtdbtk-2.3.2-py3-none-any.whl size=1829490 sha256=1351c330c45bcc527bfc545253f4671fc8d4e0a5b5ab94387910c7016b52b9ab 2023-07-05T22:56:30,188 Stored in directory: /tmp/pip-ephem-wheel-cache-e4hux770/wheels/62/ac/dc/fd91880f0066816eafeb53652e5fb968948651dfad72eb17c9 2023-07-05T22:56:30,229 Successfully built gtdbtk 2023-07-05T22:56:30,377 Removed build tracker: '/tmp/pip-build-tracker-71hw07pe'