2023-07-06T09:43:02,685 Created temporary directory: /tmp/pip-build-tracker-ipu64ynf 2023-07-06T09:43:02,686 Initialized build tracking at /tmp/pip-build-tracker-ipu64ynf 2023-07-06T09:43:02,686 Created build tracker: /tmp/pip-build-tracker-ipu64ynf 2023-07-06T09:43:02,686 Entered build tracker: /tmp/pip-build-tracker-ipu64ynf 2023-07-06T09:43:02,687 Created temporary directory: /tmp/pip-wheel-jdoky0am 2023-07-06T09:43:02,690 Created temporary directory: /tmp/pip-ephem-wheel-cache-v3xfu64t 2023-07-06T09:43:02,717 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-06T09:43:02,720 2 location(s) to search for versions of pmx-biobb: 2023-07-06T09:43:02,720 * https://pypi.org/simple/pmx-biobb/ 2023-07-06T09:43:02,720 * https://www.piwheels.org/simple/pmx-biobb/ 2023-07-06T09:43:02,720 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/ 2023-07-06T09:43:02,721 Getting page https://pypi.org/simple/pmx-biobb/ 2023-07-06T09:43:02,722 Found index url https://pypi.org/simple/ 2023-07-06T09:43:02,783 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json 2023-07-06T09:43:02,787 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,788 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,788 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,789 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,789 Link requires a different Python (3.9.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,790 Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,790 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,790 Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0 2023-07-06T09:43:02,791 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,791 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,791 Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1 2023-07-06T09:43:02,792 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,792 Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2 2023-07-06T09:43:02,793 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,793 Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3 2023-07-06T09:43:02,793 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,794 Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0 2023-07-06T09:43:02,794 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,795 Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1 2023-07-06T09:43:02,795 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,796 Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2 2023-07-06T09:43:02,796 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/21/d8/92f5da41c0ccee7807122989b44711b075159e3129707c40a469a5333825/pmx_biobb-4.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,796 Found link https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.2 2023-07-06T09:43:02,797 Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8f/b7/67894a846ff237417e009dd532d744eff5fd675e98ccb50e27fda4c145e1/pmx_biobb-4.1.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,797 Found link https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.3 2023-07-06T09:43:02,798 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/ 2023-07-06T09:43:02,798 Getting page https://www.piwheels.org/simple/pmx-biobb/ 2023-07-06T09:43:02,799 Found index url https://www.piwheels.org/simple/ 2023-07-06T09:43:02,972 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html 2023-07-06T09:43:02,984 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv7l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,984 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv6l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,984 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,984 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv6l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,985 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv7l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,985 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv6l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,985 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,985 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv6l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,985 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,986 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,986 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,986 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,986 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,986 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,987 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,987 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,987 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,987 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,987 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,988 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,989 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7) 2023-07-06T09:43:02,990 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,991 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,991 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,991 Skipping link: No binaries permitted for pmx-biobb: https://www.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*) 2023-07-06T09:43:02,991 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/ 2023-07-06T09:43:02,992 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/ 2023-07-06T09:43:03,010 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates 2023-07-06T09:43:03,027 Collecting pmx-biobb==4.1.3 2023-07-06T09:43:03,029 Created temporary directory: /tmp/pip-unpack-l2uo1gcv 2023-07-06T09:43:03,084 Downloading pmx_biobb-4.1.3.tar.gz (5.4 MB) 2023-07-06T09:43:05,597 Added pmx-biobb==4.1.3 from https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-ipu64ynf' 2023-07-06T09:43:05,599 Running setup.py (path:/tmp/pip-wheel-jdoky0am/pmx-biobb_c79af335cfa641f0807fa73ec8d72df9/setup.py) egg_info for package pmx-biobb 2023-07-06T09:43:05,600 Created temporary directory: /tmp/pip-pip-egg-info-dn2dn9_e 2023-07-06T09:43:05,600 Preparing metadata (setup.py): started 2023-07-06T09:43:05,601 Running command python setup.py egg_info 2023-07-06T09:43:06,256 running egg_info 2023-07-06T09:43:06,257 creating /tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info 2023-07-06T09:43:06,282 writing /tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info/PKG-INFO 2023-07-06T09:43:06,285 writing dependency_links to /tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info/dependency_links.txt 2023-07-06T09:43:06,287 writing entry points to /tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info/entry_points.txt 2023-07-06T09:43:06,288 writing requirements to /tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info/requires.txt 2023-07-06T09:43:06,289 writing top-level names to /tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info/top_level.txt 2023-07-06T09:43:06,291 writing manifest file '/tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info/SOURCES.txt' 2023-07-06T09:43:06,554 reading manifest file '/tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info/SOURCES.txt' 2023-07-06T09:43:06,556 reading manifest template 'MANIFEST.in' 2023-07-06T09:43:06,579 adding license file 'LICENSE' 2023-07-06T09:43:06,592 writing manifest file '/tmp/pip-pip-egg-info-dn2dn9_e/pmx_biobb.egg-info/SOURCES.txt' 2023-07-06T09:43:06,663 Preparing metadata (setup.py): finished with status 'done' 2023-07-06T09:43:06,669 Source in /tmp/pip-wheel-jdoky0am/pmx-biobb_c79af335cfa641f0807fa73ec8d72df9 has version 4.1.3, which satisfies requirement pmx-biobb==4.1.3 from https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz 2023-07-06T09:43:06,670 Removed pmx-biobb==4.1.3 from https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-ipu64ynf' 2023-07-06T09:43:06,676 Created temporary directory: /tmp/pip-unpack-nn4q1idy 2023-07-06T09:43:06,676 Building wheels for collected packages: pmx-biobb 2023-07-06T09:43:06,680 Created temporary directory: /tmp/pip-wheel-fjkbfvto 2023-07-06T09:43:06,681 Building wheel for pmx-biobb (setup.py): started 2023-07-06T09:43:06,682 Destination directory: /tmp/pip-wheel-fjkbfvto 2023-07-06T09:43:06,682 Running command python setup.py bdist_wheel 2023-07-06T09:43:07,354 running bdist_wheel 2023-07-06T09:43:07,640 running build 2023-07-06T09:43:07,640 running build_py 2023-07-06T09:43:07,645 creating build 2023-07-06T09:43:07,645 creating build/lib.linux-armv7l-cpython-39 2023-07-06T09:43:07,646 creating build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,647 copying src/pmx/rosetta.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,650 copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,652 copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,654 copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,656 copying src/pmx/summary.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,659 copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,661 copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,663 copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,666 copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,668 copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,670 copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,672 copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,675 copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,677 copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,680 copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,683 copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,685 copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,689 copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,692 copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,695 copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,699 copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,701 copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,706 copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,708 copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,709 copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,712 copying src/pmx/AbsRestraints.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,714 copying src/pmx/rosetta_analyze.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,717 copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,719 copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,722 copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-39/pmx 2023-07-06T09:43:07,724 running egg_info 2023-07-06T09:43:07,780 writing src/pmx_biobb.egg-info/PKG-INFO 2023-07-06T09:43:07,782 writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt 2023-07-06T09:43:07,784 writing entry points to src/pmx_biobb.egg-info/entry_points.txt 2023-07-06T09:43:07,786 writing requirements to src/pmx_biobb.egg-info/requires.txt 2023-07-06T09:43:07,787 writing top-level names to src/pmx_biobb.egg-info/top_level.txt 2023-07-06T09:43:07,817 reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-07-06T09:43:07,826 reading manifest template 'MANIFEST.in' 2023-07-06T09:43:07,843 adding license file 'LICENSE' 2023-07-06T09:43:07,861 writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt' 2023-07-06T09:43:07,865 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data' is absent from the `packages` configuration. 2023-07-06T09:43:07,865 !! 2023-07-06T09:43:07,865 ******************************************************************************** 2023-07-06T09:43:07,865 ############################ 2023-07-06T09:43:07,865 # Package would be ignored # 2023-07-06T09:43:07,866 ############################ 2023-07-06T09:43:07,866 Python recognizes 'pmx.data' as an importable package[^1], 2023-07-06T09:43:07,866 but it is absent from setuptools' `packages` configuration. 2023-07-06T09:43:07,866 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T09:43:07,866 package, please make sure that 'pmx.data' is explicitly added 2023-07-06T09:43:07,866 to the `packages` configuration field. 2023-07-06T09:43:07,867 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T09:43:07,867 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T09:43:07,867 instead of `find_packages(...)`/`find:`). 2023-07-06T09:43:07,867 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T09:43:07,867 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T09:43:07,867 If you don't want 'pmx.data' to be distributed and are 2023-07-06T09:43:07,868 already explicitly excluding 'pmx.data' via 2023-07-06T09:43:07,868 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T09:43:07,868 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T09:43:07,868 combination with a more fine grained `package-data` configuration. 2023-07-06T09:43:07,868 You can read more about "package data files" on setuptools documentation page: 2023-07-06T09:43:07,868 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T09:43:07,869 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T09:43:07,869 even if it does not contain any `.py` files. 2023-07-06T09:43:07,869 On the other hand, currently there is no concept of package data 2023-07-06T09:43:07,869 directory, all directories are treated like packages. 2023-07-06T09:43:07,869 ******************************************************************************** 2023-07-06T09:43:07,869 !! 2023-07-06T09:43:07,870 check.warn(importable) 2023-07-06T09:43:07,870 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration. 2023-07-06T09:43:07,870 !! 2023-07-06T09:43:07,870 ******************************************************************************** 2023-07-06T09:43:07,870 ############################ 2023-07-06T09:43:07,870 # Package would be ignored # 2023-07-06T09:43:07,870 ############################ 2023-07-06T09:43:07,871 Python recognizes 'pmx.data.mutff' as an importable package[^1], 2023-07-06T09:43:07,871 but it is absent from setuptools' `packages` configuration. 2023-07-06T09:43:07,871 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T09:43:07,871 package, please make sure that 'pmx.data.mutff' is explicitly added 2023-07-06T09:43:07,871 to the `packages` configuration field. 2023-07-06T09:43:07,871 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T09:43:07,872 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T09:43:07,872 instead of `find_packages(...)`/`find:`). 2023-07-06T09:43:07,872 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T09:43:07,872 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T09:43:07,872 If you don't want 'pmx.data.mutff' to be distributed and are 2023-07-06T09:43:07,872 already explicitly excluding 'pmx.data.mutff' via 2023-07-06T09:43:07,873 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T09:43:07,873 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T09:43:07,873 combination with a more fine grained `package-data` configuration. 2023-07-06T09:43:07,873 You can read more about "package data files" on setuptools documentation page: 2023-07-06T09:43:07,873 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T09:43:07,874 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T09:43:07,874 even if it does not contain any `.py` files. 2023-07-06T09:43:07,874 On the other hand, currently there is no concept of package data 2023-07-06T09:43:07,874 directory, all directories are treated like packages. 2023-07-06T09:43:07,874 ******************************************************************************** 2023-07-06T09:43:07,874 !! 2023-07-06T09:43:07,874 check.warn(importable) 2023-07-06T09:43:07,886 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration. 2023-07-06T09:43:07,886 !! 2023-07-06T09:43:07,886 ******************************************************************************** 2023-07-06T09:43:07,886 ############################ 2023-07-06T09:43:07,886 # Package would be ignored # 2023-07-06T09:43:07,887 ############################ 2023-07-06T09:43:07,887 Python recognizes 'pmx.extensions.pmx' as an importable package[^1], 2023-07-06T09:43:07,887 but it is absent from setuptools' `packages` configuration. 2023-07-06T09:43:07,887 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T09:43:07,887 package, please make sure that 'pmx.extensions.pmx' is explicitly added 2023-07-06T09:43:07,887 to the `packages` configuration field. 2023-07-06T09:43:07,888 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T09:43:07,888 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T09:43:07,888 instead of `find_packages(...)`/`find:`). 2023-07-06T09:43:07,888 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T09:43:07,888 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T09:43:07,888 If you don't want 'pmx.extensions.pmx' to be distributed and are 2023-07-06T09:43:07,889 already explicitly excluding 'pmx.extensions.pmx' via 2023-07-06T09:43:07,889 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T09:43:07,889 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T09:43:07,889 combination with a more fine grained `package-data` configuration. 2023-07-06T09:43:07,889 You can read more about "package data files" on setuptools documentation page: 2023-07-06T09:43:07,889 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T09:43:07,890 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T09:43:07,890 even if it does not contain any `.py` files. 2023-07-06T09:43:07,890 On the other hand, currently there is no concept of package data 2023-07-06T09:43:07,890 directory, all directories are treated like packages. 2023-07-06T09:43:07,890 ******************************************************************************** 2023-07-06T09:43:07,890 !! 2023-07-06T09:43:07,891 check.warn(importable) 2023-07-06T09:43:07,891 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration. 2023-07-06T09:43:07,891 !! 2023-07-06T09:43:07,891 ******************************************************************************** 2023-07-06T09:43:07,891 ############################ 2023-07-06T09:43:07,891 # Package would be ignored # 2023-07-06T09:43:07,892 ############################ 2023-07-06T09:43:07,892 Python recognizes 'pmx.extensions.xdr' as an importable package[^1], 2023-07-06T09:43:07,892 but it is absent from setuptools' `packages` configuration. 2023-07-06T09:43:07,892 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T09:43:07,892 package, please make sure that 'pmx.extensions.xdr' is explicitly added 2023-07-06T09:43:07,892 to the `packages` configuration field. 2023-07-06T09:43:07,892 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T09:43:07,893 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T09:43:07,893 instead of `find_packages(...)`/`find:`). 2023-07-06T09:43:07,893 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T09:43:07,893 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T09:43:07,893 If you don't want 'pmx.extensions.xdr' to be distributed and are 2023-07-06T09:43:07,894 already explicitly excluding 'pmx.extensions.xdr' via 2023-07-06T09:43:07,894 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T09:43:07,894 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T09:43:07,894 combination with a more fine grained `package-data` configuration. 2023-07-06T09:43:07,894 You can read more about "package data files" on setuptools documentation page: 2023-07-06T09:43:07,894 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T09:43:07,895 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T09:43:07,895 even if it does not contain any `.py` files. 2023-07-06T09:43:07,895 On the other hand, currently there is no concept of package data 2023-07-06T09:43:07,895 directory, all directories are treated like packages. 2023-07-06T09:43:07,895 ******************************************************************************** 2023-07-06T09:43:07,895 !! 2023-07-06T09:43:07,896 check.warn(importable) 2023-07-06T09:43:07,896 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration. 2023-07-06T09:43:07,896 !! 2023-07-06T09:43:07,896 ******************************************************************************** 2023-07-06T09:43:07,896 ############################ 2023-07-06T09:43:07,896 # Package would be ignored # 2023-07-06T09:43:07,896 ############################ 2023-07-06T09:43:07,896 Python recognizes 'pmx.scripts' as an importable package[^1], 2023-07-06T09:43:07,897 but it is absent from setuptools' `packages` configuration. 2023-07-06T09:43:07,897 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T09:43:07,897 package, please make sure that 'pmx.scripts' is explicitly added 2023-07-06T09:43:07,897 to the `packages` configuration field. 2023-07-06T09:43:07,897 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T09:43:07,897 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T09:43:07,897 instead of `find_packages(...)`/`find:`). 2023-07-06T09:43:07,898 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T09:43:07,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T09:43:07,898 If you don't want 'pmx.scripts' to be distributed and are 2023-07-06T09:43:07,898 already explicitly excluding 'pmx.scripts' via 2023-07-06T09:43:07,898 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T09:43:07,898 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T09:43:07,898 combination with a more fine grained `package-data` configuration. 2023-07-06T09:43:07,899 You can read more about "package data files" on setuptools documentation page: 2023-07-06T09:43:07,899 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T09:43:07,899 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T09:43:07,899 even if it does not contain any `.py` files. 2023-07-06T09:43:07,900 On the other hand, currently there is no concept of package data 2023-07-06T09:43:07,900 directory, all directories are treated like packages. 2023-07-06T09:43:07,900 ******************************************************************************** 2023-07-06T09:43:07,900 !! 2023-07-06T09:43:07,900 check.warn(importable) 2023-07-06T09:43:07,900 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pmx.scripts.icolos_entrypoints' is absent from the `packages` configuration. 2023-07-06T09:43:07,900 !! 2023-07-06T09:43:07,901 ******************************************************************************** 2023-07-06T09:43:07,901 ############################ 2023-07-06T09:43:07,901 # Package would be ignored # 2023-07-06T09:43:07,901 ############################ 2023-07-06T09:43:07,901 Python recognizes 'pmx.scripts.icolos_entrypoints' as an importable package[^1], 2023-07-06T09:43:07,901 but it is absent from setuptools' `packages` configuration. 2023-07-06T09:43:07,901 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T09:43:07,901 package, please make sure that 'pmx.scripts.icolos_entrypoints' is explicitly added 2023-07-06T09:43:07,902 to the `packages` configuration field. 2023-07-06T09:43:07,902 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T09:43:07,902 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T09:43:07,902 instead of `find_packages(...)`/`find:`). 2023-07-06T09:43:07,902 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T09:43:07,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T09:43:07,903 If you don't want 'pmx.scripts.icolos_entrypoints' to be distributed and are 2023-07-06T09:43:07,903 already explicitly excluding 'pmx.scripts.icolos_entrypoints' via 2023-07-06T09:43:07,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T09:43:07,903 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T09:43:07,903 combination with a more fine grained `package-data` configuration. 2023-07-06T09:43:07,903 You can read more about "package data files" on setuptools documentation page: 2023-07-06T09:43:07,904 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T09:43:07,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T09:43:07,904 even if it does not contain any `.py` files. 2023-07-06T09:43:07,904 On the other hand, currently there is no concept of package data 2023-07-06T09:43:07,904 directory, all directories are treated like packages. 2023-07-06T09:43:07,904 ******************************************************************************** 2023-07-06T09:43:07,905 !! 2023-07-06T09:43:07,905 check.warn(importable) 2023-07-06T09:43:07,909 creating build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-06T09:43:07,910 copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-06T09:43:07,916 copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-06T09:43:08,162 copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-06T09:43:08,164 copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-06T09:43:08,169 copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-06T09:43:08,173 copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-06T09:43:08,178 copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-39/pmx/data 2023-07-06T09:43:08,181 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-06T09:43:08,182 copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-06T09:43:08,184 copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-06T09:43:08,186 copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-06T09:43:08,189 copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-06T09:43:08,192 copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-06T09:43:08,194 copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-06T09:43:08,196 copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff 2023-07-06T09:43:08,198 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,198 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,200 copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,203 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,205 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,207 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,209 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,211 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,213 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,217 copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,219 copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,222 copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,223 copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,226 copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,227 copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,230 copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,234 copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,236 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,238 copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,240 copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,242 copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,244 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,290 copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,312 copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,314 copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,316 copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,318 copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,321 copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,323 copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,325 copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,327 copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,329 copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,331 copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,333 copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,335 copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:08,337 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,338 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,340 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,342 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,344 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,346 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,348 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,350 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,354 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,357 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,359 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,362 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,391 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,394 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,396 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,397 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,399 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,402 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,404 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,407 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,409 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,411 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,413 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,415 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,417 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,460 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,482 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,489 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,493 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,496 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,499 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,501 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,503 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,505 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,508 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,510 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,512 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,514 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,516 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,518 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,520 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,522 copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:08,524 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,525 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,527 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,529 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,532 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,534 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,536 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,540 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,542 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,545 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,548 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,568 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,571 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,573 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,575 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,577 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,580 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,582 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,585 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,588 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,590 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,592 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,594 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,596 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,647 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,668 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,675 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,679 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,682 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,684 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,686 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,688 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,691 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,694 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,696 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,697 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,699 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,701 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,704 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,706 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,708 copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:08,711 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,711 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,714 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,716 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,719 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,720 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,722 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,727 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,729 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,732 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,733 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,736 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,737 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,740 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,743 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,746 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,747 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,749 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,752 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,754 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,827 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,854 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,856 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,858 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,860 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,863 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,865 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,867 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,869 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,871 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,873 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,875 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,877 copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:08,879 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,880 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,882 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,884 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,886 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,888 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,890 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,893 copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,895 copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,898 copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,901 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,903 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,905 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,907 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,909 copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,911 copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,915 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,919 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,922 copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,927 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,929 copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,931 copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,933 copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,935 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,937 copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,940 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,942 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:08,985 copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,008 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,010 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,012 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,015 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,017 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,019 copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,022 copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,024 copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,027 copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,029 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,032 copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,034 copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,036 copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,039 copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:09,041 creating build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,042 copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,045 copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,050 copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,067 copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,094 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,097 copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,099 copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,101 copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,103 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,105 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,107 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,110 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,112 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,113 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,135 copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,138 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,140 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,187 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,211 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,218 copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,222 copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,224 copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,226 copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,227 copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,229 copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,231 copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:09,233 creating build/lib.linux-armv7l-cpython-39/pmx/extensions 2023-07-06T09:43:09,233 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-06T09:43:09,234 copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-06T09:43:09,237 copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-06T09:43:09,239 copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-06T09:43:09,242 copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-06T09:43:09,244 copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-06T09:43:09,246 copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-06T09:43:09,248 copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx 2023-07-06T09:43:09,251 creating build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,251 copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,254 copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,257 copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,260 copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,262 copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,265 copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,267 copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,269 copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr 2023-07-06T09:43:09,271 creating build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,272 copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,274 copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,277 copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,279 copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,282 copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,284 copying src/pmx/scripts/gen_abs_restraints.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,286 copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,289 copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,292 copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,294 copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,296 copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,299 copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,302 copying src/pmx/scripts/parameterize_ligands.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,305 copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,307 copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,309 copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts 2023-07-06T09:43:09,311 creating build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-07-06T09:43:09,312 copying src/pmx/scripts/icolos_entrypoints/__init__.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-07-06T09:43:09,314 copying src/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints 2023-07-06T09:43:09,319 UPDATING build/lib.linux-armv7l-cpython-39/pmx/_version.py 2023-07-06T09:43:09,320 set build/lib.linux-armv7l-cpython-39/pmx/_version.py to '4.1.3' 2023-07-06T09:43:09,320 running build_ext 2023-07-06T09:43:09,326 building 'pmx._pmx' extension 2023-07-06T09:43:09,327 creating build/temp.linux-armv7l-cpython-39 2023-07-06T09:43:09,327 creating build/temp.linux-armv7l-cpython-39/src 2023-07-06T09:43:09,328 creating build/temp.linux-armv7l-cpython-39/src/pmx 2023-07-06T09:43:09,329 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions 2023-07-06T09:43:09,330 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx 2023-07-06T09:43:09,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o 2023-07-06T09:43:10,279 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o 2023-07-06T09:43:10,598 src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’: 2023-07-06T09:43:10,598 src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-07-06T09:43:10,598 527 | int nx, ny, nz; 2023-07-06T09:43:10,599 | ^~ 2023-07-06T09:43:10,599 src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’: 2023-07-06T09:43:10,599 src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable] 2023-07-06T09:43:10,600 586 | int nx, ny, nz; 2023-07-06T09:43:10,600 | ^~ 2023-07-06T09:43:12,243 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o 2023-07-06T09:43:12,589 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.9 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o 2023-07-06T09:43:13,920 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so 2023-07-06T09:43:14,044 building 'pmx._xdrio' extension 2023-07-06T09:43:14,044 creating build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr 2023-07-06T09:43:14,045 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.9 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-39/src/pmx/extensions/xdr/xdrfile.o 2023-07-06T09:43:14,087 src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment] 2023-07-06T09:43:14,087 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-07-06T09:43:14,088 | 2023-07-06T09:43:14,163 In file included from src/pmx/extensions/xdr/xdrfile.c:60: 2023-07-06T09:43:14,163 src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-07-06T09:43:14,163 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-07-06T09:43:14,163 | 2023-07-06T09:43:14,169 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’: 2023-07-06T09:43:14,170 src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-06T09:43:14,170 499 | while (size >= num && num_of_bits < 32) 2023-07-06T09:43:14,170 | ^~ 2023-07-06T09:43:14,170 src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’: 2023-07-06T09:43:14,170 src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-06T09:43:14,170 545 | while (bytes[num_of_bytes] >= num) 2023-07-06T09:43:14,171 | ^~ 2023-07-06T09:43:14,171 src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’: 2023-07-06T09:43:14,172 src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-06T09:43:14,172 654 | if (num_of_bits >= num_of_bytes * 8) 2023-07-06T09:43:14,172 | ^~ 2023-07-06T09:43:14,172 src/pmx/extensions/xdr/xdrfile.c:656:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-06T09:43:14,172 656 | for (i = 0; i < num_of_bytes; i++) 2023-07-06T09:43:14,172 | ^ 2023-07-06T09:43:14,172 src/pmx/extensions/xdr/xdrfile.c:664:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-06T09:43:14,173 664 | for (i = 0; i < num_of_bytes-1; i++) 2023-07-06T09:43:14,173 | ^ 2023-07-06T09:43:14,173 src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’: 2023-07-06T09:43:14,173 src/pmx/extensions/xdr/xdrfile.c:704:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-06T09:43:14,173 704 | if (lastbits < num_of_bits) 2023-07-06T09:43:14,173 | ^ 2023-07-06T09:43:14,175 src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-07-06T09:43:14,175 src/pmx/extensions/xdr/xdrfile.c:814:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-06T09:43:14,176 814 | if(size3>xfp->buf1size) 2023-07-06T09:43:14,176 | ^ 2023-07-06T09:43:14,177 src/pmx/extensions/xdr/xdrfile.c:866:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-06T09:43:14,177 866 | maxidx = (LASTIDXxfp->buf1size) 2023-07-06T09:43:14,182 | ^ 2023-07-06T09:43:14,186 src/pmx/extensions/xdr/xdrfile.c:1133:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-06T09:43:14,187 1133 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-07-06T09:43:14,187 | ^ 2023-07-06T09:43:14,187 src/pmx/extensions/xdr/xdrfile.c:1139:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-06T09:43:14,187 1139 | maxidx = (LASTIDXxfp->buf1size) 2023-07-06T09:43:14,194 | ^ 2023-07-06T09:43:14,195 src/pmx/extensions/xdr/xdrfile.c:1366:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-06T09:43:14,196 1366 | maxidx = (LASTIDXxfp->buf1size) { 2023-07-06T09:43:14,202 | ^ 2023-07-06T09:43:14,208 src/pmx/extensions/xdr/xdrfile.c:1617:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-07-06T09:43:14,208 1617 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-07-06T09:43:14,208 | ^ 2023-07-06T09:43:14,209 src/pmx/extensions/xdr/xdrfile.c:1622:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-07-06T09:43:14,209 1622 | maxidx = (LASTIDX build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:17,361 copying build/lib.linux-armv7l-cpython-39/pmx/rosetta.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:17,364 copying build/lib.linux-armv7l-cpython-39/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:17,366 copying build/lib.linux-armv7l-cpython-39/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:17,368 copying build/lib.linux-armv7l-cpython-39/pmx/options.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:17,370 copying build/lib.linux-armv7l-cpython-39/pmx/summary.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:17,373 creating build/bdist.linux-armv7l/wheel/pmx/data 2023-07-06T09:43:17,374 copying build/lib.linux-armv7l-cpython-39/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-06T09:43:17,378 copying build/lib.linux-armv7l-cpython-39/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-06T09:43:17,678 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-06T09:43:17,679 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-06T09:43:17,683 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-06T09:43:17,685 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,686 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,688 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,692 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,694 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,696 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,698 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,700 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,702 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,704 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,736 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,738 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,740 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,741 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,744 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,746 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,748 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,750 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,752 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,754 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,756 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,803 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,805 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,807 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,810 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,812 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,813 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,815 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,818 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,819 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,821 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,823 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,824 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff 2023-07-06T09:43:17,827 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,828 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,830 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,833 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,835 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,836 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,838 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,840 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,842 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,844 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,846 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,848 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,875 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,877 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,879 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,881 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,883 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,886 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,888 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,890 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,892 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,894 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,896 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,942 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,944 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,946 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,949 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,951 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,952 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,954 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,957 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,958 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,960 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,962 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,964 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff 2023-07-06T09:43:17,966 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-06T09:43:17,969 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,970 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,972 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,977 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,979 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,980 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,983 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,985 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,987 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,989 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:17,990 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,011 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,013 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,016 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,019 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,021 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,023 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,026 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,029 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,031 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,033 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,036 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,038 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,089 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,092 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,094 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,096 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,114 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,117 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,119 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,121 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,129 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,130 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,135 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,136 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,139 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,141 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,143 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,144 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,146 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,149 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff 2023-07-06T09:43:18,152 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,153 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,157 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,158 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,160 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,162 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,164 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,191 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,193 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,213 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,215 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,217 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,219 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,220 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,267 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,270 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,272 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,290 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,292 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,294 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,296 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,303 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,304 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,306 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,325 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,330 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,331 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff 2023-07-06T09:43:18,335 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,336 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,338 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,342 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,344 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,346 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,349 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,351 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,353 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,355 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,356 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,384 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,386 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,389 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,391 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,394 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,397 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,400 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,403 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,405 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,406 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,409 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,411 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,452 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,454 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,457 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,458 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,479 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,481 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,484 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,486 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,488 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,497 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,499 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,503 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,505 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,508 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,510 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,512 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,514 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,516 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,518 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff 2023-07-06T09:43:18,520 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-06T09:43:18,522 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-06T09:43:18,525 creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,526 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,528 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,531 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,533 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,535 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,538 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,540 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,542 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,544 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,546 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,547 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,549 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,554 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,555 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,575 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,577 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,578 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,580 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,583 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,585 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,587 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,589 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,591 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,593 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,595 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,596 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,643 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,646 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,650 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,651 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,653 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,655 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,657 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,658 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,660 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,663 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,665 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,667 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,670 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,672 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,674 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff 2023-07-06T09:43:18,675 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-06T09:43:18,677 copying build/lib.linux-armv7l-cpython-39/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/pmx/data/mutff 2023-07-06T09:43:18,679 copying build/lib.linux-armv7l-cpython-39/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-06T09:43:18,681 copying build/lib.linux-armv7l-cpython-39/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-06T09:43:18,687 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-06T09:43:18,693 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-06T09:43:18,698 copying build/lib.linux-armv7l-cpython-39/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/pmx/data 2023-07-06T09:43:18,704 copying build/lib.linux-armv7l-cpython-39/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,706 copying build/lib.linux-armv7l-cpython-39/pmx/builder.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,708 copying build/lib.linux-armv7l-cpython-39/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,711 copying build/lib.linux-armv7l-cpython-39/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,713 copying build/lib.linux-armv7l-cpython-39/pmx/_pmx.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,719 copying build/lib.linux-armv7l-cpython-39/pmx/utils.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,722 copying build/lib.linux-armv7l-cpython-39/pmx/parser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,724 copying build/lib.linux-armv7l-cpython-39/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,727 copying build/lib.linux-armv7l-cpython-39/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,729 copying build/lib.linux-armv7l-cpython-39/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,732 creating build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,733 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/parameterize_ligands.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,736 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,738 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,740 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,743 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,745 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,747 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,750 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,751 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,755 creating build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-07-06T09:43:18,755 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-07-06T09:43:18,758 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/icolos_entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints 2023-07-06T09:43:18,759 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,761 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,763 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,766 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,768 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,770 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,774 copying build/lib.linux-armv7l-cpython-39/pmx/scripts/gen_abs_restraints.py -> build/bdist.linux-armv7l/wheel/pmx/scripts 2023-07-06T09:43:18,776 copying build/lib.linux-armv7l-cpython-39/pmx/chain.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,778 copying build/lib.linux-armv7l-cpython-39/pmx/model.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,781 copying build/lib.linux-armv7l-cpython-39/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,785 copying build/lib.linux-armv7l-cpython-39/pmx/atom.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,787 copying build/lib.linux-armv7l-cpython-39/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,791 copying build/lib.linux-armv7l-cpython-39/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,795 copying build/lib.linux-armv7l-cpython-39/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,798 copying build/lib.linux-armv7l-cpython-39/pmx/library.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,803 copying build/lib.linux-armv7l-cpython-39/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,805 copying build/lib.linux-armv7l-cpython-39/pmx/_version.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,807 creating build/bdist.linux-armv7l/wheel/pmx/extensions 2023-07-06T09:43:18,808 creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-06T09:43:18,810 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-06T09:43:18,813 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-06T09:43:18,814 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-06T09:43:18,817 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-06T09:43:18,819 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-06T09:43:18,821 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-06T09:43:18,824 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/pmx 2023-07-06T09:43:18,827 creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,827 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,829 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,832 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,834 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,836 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,838 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,842 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,845 copying build/lib.linux-armv7l-cpython-39/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/pmx/extensions/xdr 2023-07-06T09:43:18,847 copying build/lib.linux-armv7l-cpython-39/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,850 copying build/lib.linux-armv7l-cpython-39/pmx/AbsRestraints.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,852 copying build/lib.linux-armv7l-cpython-39/pmx/rosetta_analyze.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,855 copying build/lib.linux-armv7l-cpython-39/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,857 copying build/lib.linux-armv7l-cpython-39/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,860 copying build/lib.linux-armv7l-cpython-39/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/pmx 2023-07-06T09:43:18,862 running install_egg_info 2023-07-06T09:43:18,893 Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/pmx_biobb-4.1.3-py3.9.egg-info 2023-07-06T09:43:18,908 running install_scripts 2023-07-06T09:43:18,961 creating build/bdist.linux-armv7l/wheel/pmx_biobb-4.1.3.dist-info/WHEEL 2023-07-06T09:43:18,964 creating '/tmp/pip-wheel-fjkbfvto/pmx_biobb-4.1.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-06T09:43:18,969 adding 'pmx/AbsRestraints.py' 2023-07-06T09:43:18,971 adding 'pmx/__init__.py' 2023-07-06T09:43:19,017 adding 'pmx/_pmx.cpython-39-arm-linux-gnueabihf.so' 2023-07-06T09:43:19,020 adding 'pmx/_version.py' 2023-07-06T09:43:19,058 adding 'pmx/_xdrio.cpython-39-arm-linux-gnueabihf.so' 2023-07-06T09:43:19,071 adding 'pmx/alchemy.py' 2023-07-06T09:43:19,075 adding 'pmx/analysis.py' 2023-07-06T09:43:19,078 adding 'pmx/atom.py' 2023-07-06T09:43:19,081 adding 'pmx/atomselection.py' 2023-07-06T09:43:19,085 adding 'pmx/builder.py' 2023-07-06T09:43:19,090 adding 'pmx/chain.py' 2023-07-06T09:43:19,095 adding 'pmx/estimators.py' 2023-07-06T09:43:19,098 adding 'pmx/ffparser.py' 2023-07-06T09:43:19,108 adding 'pmx/forcefield.py' 2023-07-06T09:43:19,110 adding 'pmx/geometry.py' 2023-07-06T09:43:19,112 adding 'pmx/gmx.py' 2023-07-06T09:43:19,114 adding 'pmx/jobscript.py' 2023-07-06T09:43:19,122 adding 'pmx/library.py' 2023-07-06T09:43:19,136 adding 'pmx/ligand_alchemy.py' 2023-07-06T09:43:19,142 adding 'pmx/model.py' 2023-07-06T09:43:19,146 adding 'pmx/molecule.py' 2023-07-06T09:43:19,148 adding 'pmx/mutdb.py' 2023-07-06T09:43:19,149 adding 'pmx/ndx.py' 2023-07-06T09:43:19,152 adding 'pmx/options.py' 2023-07-06T09:43:19,153 adding 'pmx/parser.py' 2023-07-06T09:43:19,156 adding 'pmx/rosetta.py' 2023-07-06T09:43:19,159 adding 'pmx/rosetta_analyze.py' 2023-07-06T09:43:19,161 adding 'pmx/rotamer.py' 2023-07-06T09:43:19,163 adding 'pmx/summary.py' 2023-07-06T09:43:19,166 adding 'pmx/utils.py' 2023-07-06T09:43:19,168 adding 'pmx/xdrfile.py' 2023-07-06T09:43:19,169 adding 'pmx/xtc.py' 2023-07-06T09:43:19,196 adding 'pmx/data/aminoacids.pkl' 2023-07-06T09:43:21,030 adding 'pmx/data/bbdep.pkl' 2023-07-06T09:43:21,138 adding 'pmx/data/blosum62_new.mat' 2023-07-06T09:43:21,154 adding 'pmx/data/bp.pkl' 2023-07-06T09:43:21,174 adding 'pmx/data/bp_amber.pkl' 2023-07-06T09:43:21,194 adding 'pmx/data/bp_charmm.pkl' 2023-07-06T09:43:21,204 adding 'pmx/data/rna.pkl' 2023-07-06T09:43:21,206 adding 'pmx/data/mutff/atommass.dat' 2023-07-06T09:43:21,208 adding 'pmx/data/mutff/elements.dat' 2023-07-06T09:43:21,210 adding 'pmx/data/mutff/residuetypes.dat' 2023-07-06T09:43:21,217 adding 'pmx/data/mutff/spc216.gro' 2023-07-06T09:43:21,218 adding 'pmx/data/mutff/specbond.dat' 2023-07-06T09:43:21,219 adding 'pmx/data/mutff/vdwradii.dat' 2023-07-06T09:43:21,221 adding 'pmx/data/mutff/xlateat.dat' 2023-07-06T09:43:21,223 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am' 2023-07-06T09:43:21,225 adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in' 2023-07-06T09:43:21,227 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn' 2023-07-06T09:43:21,228 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb' 2023-07-06T09:43:21,230 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb' 2023-07-06T09:43:21,231 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb' 2023-07-06T09:43:21,233 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b' 2023-07-06T09:43:21,239 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp' 2023-07-06T09:43:21,241 adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd' 2023-07-06T09:43:21,243 adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp' 2023-07-06T09:43:21,244 adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn' 2023-07-06T09:43:21,245 adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb' 2023-07-06T09:43:21,247 adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b' 2023-07-06T09:43:21,249 adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp' 2023-07-06T09:43:21,256 adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp' 2023-07-06T09:43:21,258 adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp' 2023-07-06T09:43:21,259 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc' 2023-07-06T09:43:21,261 adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp' 2023-07-06T09:43:21,262 adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp' 2023-07-06T09:43:21,263 adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp' 2023-07-06T09:43:21,444 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp' 2023-07-06T09:43:21,529 adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp' 2023-07-06T09:43:21,538 adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn' 2023-07-06T09:43:21,540 adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb' 2023-07-06T09:43:21,541 adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b' 2023-07-06T09:43:21,543 adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp' 2023-07-06T09:43:21,545 adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp' 2023-07-06T09:43:21,546 adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp' 2023-07-06T09:43:21,547 adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp' 2023-07-06T09:43:21,548 adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp' 2023-07-06T09:43:21,550 adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp' 2023-07-06T09:43:21,551 adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp' 2023-07-06T09:43:21,553 adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp' 2023-07-06T09:43:21,554 adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat' 2023-07-06T09:43:21,558 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn' 2023-07-06T09:43:21,559 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup' 2023-07-06T09:43:21,560 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb' 2023-07-06T09:43:21,562 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb' 2023-07-06T09:43:21,563 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb' 2023-07-06T09:43:21,564 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b' 2023-07-06T09:43:21,572 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp' 2023-07-06T09:43:21,574 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd' 2023-07-06T09:43:21,576 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp' 2023-07-06T09:43:21,580 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-07-06T09:43:21,643 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres' 2023-07-06T09:43:21,654 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp' 2023-07-06T09:43:21,655 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn' 2023-07-06T09:43:21,657 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb' 2023-07-06T09:43:21,658 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b' 2023-07-06T09:43:21,660 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp' 2023-07-06T09:43:21,663 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp' 2023-07-06T09:43:21,667 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp' 2023-07-06T09:43:21,669 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp' 2023-07-06T09:43:21,671 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc' 2023-07-06T09:43:21,672 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp' 2023-07-06T09:43:21,673 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp' 2023-07-06T09:43:21,675 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp' 2023-07-06T09:43:21,833 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.mtp' 2023-07-06T09:43:21,912 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres.rtp' 2023-07-06T09:43:21,937 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp' 2023-07-06T09:43:21,947 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp' 2023-07-06T09:43:21,950 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp' 2023-07-06T09:43:21,953 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp' 2023-07-06T09:43:21,955 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn' 2023-07-06T09:43:21,956 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb' 2023-07-06T09:43:21,957 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b' 2023-07-06T09:43:21,960 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp' 2023-07-06T09:43:21,961 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp' 2023-07-06T09:43:21,962 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp' 2023-07-06T09:43:21,964 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp' 2023-07-06T09:43:21,965 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp' 2023-07-06T09:43:21,966 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp' 2023-07-06T09:43:21,968 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp' 2023-07-06T09:43:21,969 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp' 2023-07-06T09:43:21,970 adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat' 2023-07-06T09:43:21,972 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn' 2023-07-06T09:43:21,974 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb' 2023-07-06T09:43:21,975 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb' 2023-07-06T09:43:21,976 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb' 2023-07-06T09:43:21,978 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b' 2023-07-06T09:43:21,986 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp' 2023-07-06T09:43:21,988 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd' 2023-07-06T09:43:21,990 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp' 2023-07-06T09:43:21,994 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp' 2023-07-06T09:43:22,057 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres' 2023-07-06T09:43:22,068 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp' 2023-07-06T09:43:22,070 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn' 2023-07-06T09:43:22,071 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb' 2023-07-06T09:43:22,072 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b' 2023-07-06T09:43:22,075 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp' 2023-07-06T09:43:22,077 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp' 2023-07-06T09:43:22,081 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp' 2023-07-06T09:43:22,083 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp' 2023-07-06T09:43:22,084 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc' 2023-07-06T09:43:22,085 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp' 2023-07-06T09:43:22,087 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp' 2023-07-06T09:43:22,088 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp' 2023-07-06T09:43:22,246 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.mtp' 2023-07-06T09:43:22,325 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres.rtp' 2023-07-06T09:43:22,350 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp' 2023-07-06T09:43:22,360 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp' 2023-07-06T09:43:22,363 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp' 2023-07-06T09:43:22,366 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp' 2023-07-06T09:43:22,367 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn' 2023-07-06T09:43:22,369 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb' 2023-07-06T09:43:22,370 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b' 2023-07-06T09:43:22,372 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp' 2023-07-06T09:43:22,374 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp' 2023-07-06T09:43:22,375 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp' 2023-07-06T09:43:22,376 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp' 2023-07-06T09:43:22,378 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp' 2023-07-06T09:43:22,379 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp' 2023-07-06T09:43:22,380 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp' 2023-07-06T09:43:22,382 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp' 2023-07-06T09:43:22,383 adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat' 2023-07-06T09:43:22,386 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn' 2023-07-06T09:43:22,387 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb' 2023-07-06T09:43:22,389 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb' 2023-07-06T09:43:22,390 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb' 2023-07-06T09:43:22,391 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b' 2023-07-06T09:43:22,400 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp' 2023-07-06T09:43:22,402 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd' 2023-07-06T09:43:22,404 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp' 2023-07-06T09:43:22,405 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn' 2023-07-06T09:43:22,406 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb' 2023-07-06T09:43:22,407 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b' 2023-07-06T09:43:22,410 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp' 2023-07-06T09:43:22,414 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp' 2023-07-06T09:43:22,416 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp' 2023-07-06T09:43:22,417 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc' 2023-07-06T09:43:22,418 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp' 2023-07-06T09:43:22,420 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp' 2023-07-06T09:43:22,422 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp' 2023-07-06T09:43:22,610 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp' 2023-07-06T09:43:22,704 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp' 2023-07-06T09:43:22,713 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn' 2023-07-06T09:43:22,715 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb' 2023-07-06T09:43:22,716 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b' 2023-07-06T09:43:22,719 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp' 2023-07-06T09:43:22,720 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp' 2023-07-06T09:43:22,722 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp' 2023-07-06T09:43:22,723 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp' 2023-07-06T09:43:22,724 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp' 2023-07-06T09:43:22,726 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp' 2023-07-06T09:43:22,727 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp' 2023-07-06T09:43:22,728 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp' 2023-07-06T09:43:22,730 adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat' 2023-07-06T09:43:22,732 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn' 2023-07-06T09:43:22,733 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb' 2023-07-06T09:43:22,735 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb' 2023-07-06T09:43:22,736 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb' 2023-07-06T09:43:22,737 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b' 2023-07-06T09:43:22,741 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp' 2023-07-06T09:43:22,743 adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd' 2023-07-06T09:43:22,745 adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp' 2023-07-06T09:43:22,750 adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp' 2023-07-06T09:43:22,752 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn' 2023-07-06T09:43:22,753 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb' 2023-07-06T09:43:22,754 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb' 2023-07-06T09:43:22,755 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb' 2023-07-06T09:43:22,758 adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp' 2023-07-06T09:43:22,765 adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp' 2023-07-06T09:43:22,773 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp' 2023-07-06T09:43:22,777 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp' 2023-07-06T09:43:22,789 adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp' 2023-07-06T09:43:22,792 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc' 2023-07-06T09:43:22,793 adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp' 2023-07-06T09:43:22,794 adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp' 2023-07-06T09:43:22,796 adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp' 2023-07-06T09:43:22,797 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb' 2023-07-06T09:43:22,801 adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp' 2023-07-06T09:43:22,803 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn' 2023-07-06T09:43:22,956 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp' 2023-07-06T09:43:23,033 adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp' 2023-07-06T09:43:23,042 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn' 2023-07-06T09:43:23,043 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb' 2023-07-06T09:43:23,044 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb' 2023-07-06T09:43:23,046 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb' 2023-07-06T09:43:23,047 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b' 2023-07-06T09:43:23,049 adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp' 2023-07-06T09:43:23,050 adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp' 2023-07-06T09:43:23,051 adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp' 2023-07-06T09:43:23,052 adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp' 2023-07-06T09:43:23,054 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp' 2023-07-06T09:43:23,055 adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp' 2023-07-06T09:43:23,056 adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp' 2023-07-06T09:43:23,058 adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp' 2023-07-06T09:43:23,059 adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat' 2023-07-06T09:43:23,063 adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp' 2023-07-06T09:43:23,075 adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp' 2023-07-06T09:43:23,161 adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp' 2023-07-06T09:43:23,292 adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp' 2023-07-06T09:43:23,304 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc' 2023-07-06T09:43:23,305 adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp' 2023-07-06T09:43:23,307 adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp' 2023-07-06T09:43:23,308 adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp' 2023-07-06T09:43:23,309 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn' 2023-07-06T09:43:23,311 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb' 2023-07-06T09:43:23,312 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb' 2023-07-06T09:43:23,314 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb' 2023-07-06T09:43:23,315 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b' 2023-07-06T09:43:23,454 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp' 2023-07-06T09:43:23,462 adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd' 2023-07-06T09:43:23,464 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn' 2023-07-06T09:43:23,631 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp' 2023-07-06T09:43:23,716 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp' 2023-07-06T09:43:23,741 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp' 2023-07-06T09:43:23,750 adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp' 2023-07-06T09:43:23,752 adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp' 2023-07-06T09:43:23,753 adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp' 2023-07-06T09:43:23,754 adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp' 2023-07-06T09:43:23,756 adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp' 2023-07-06T09:43:23,757 adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp' 2023-07-06T09:43:23,758 adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat' 2023-07-06T09:43:23,761 adding 'pmx/extensions/pmx/Energy.c' 2023-07-06T09:43:23,764 adding 'pmx/extensions/pmx/Geometry.c' 2023-07-06T09:43:23,767 adding 'pmx/extensions/pmx/Geometry.h' 2023-07-06T09:43:23,769 adding 'pmx/extensions/pmx/cpp_test.cpp' 2023-07-06T09:43:23,770 adding 'pmx/extensions/pmx/init.c' 2023-07-06T09:43:23,772 adding 'pmx/extensions/pmx/pmx.h' 2023-07-06T09:43:23,774 adding 'pmx/extensions/pmx/wrap_Geometry.c' 2023-07-06T09:43:23,777 adding 'pmx/extensions/xdr/trr2xtc.c' 2023-07-06T09:43:23,784 adding 'pmx/extensions/xdr/xdrfile.c' 2023-07-06T09:43:23,787 adding 'pmx/extensions/xdr/xdrfile.h' 2023-07-06T09:43:23,789 adding 'pmx/extensions/xdr/xdrfile_c_test.c' 2023-07-06T09:43:23,791 adding 'pmx/extensions/xdr/xdrfile_trr.c' 2023-07-06T09:43:23,793 adding 'pmx/extensions/xdr/xdrfile_trr.h' 2023-07-06T09:43:23,794 adding 'pmx/extensions/xdr/xdrfile_xtc.c' 2023-07-06T09:43:23,796 adding 'pmx/extensions/xdr/xdrfile_xtc.h' 2023-07-06T09:43:23,797 adding 'pmx/scripts/__init__.py' 2023-07-06T09:43:23,801 adding 'pmx/scripts/analyze_dhdl.py' 2023-07-06T09:43:23,803 adding 'pmx/scripts/atomMapping.py' 2023-07-06T09:43:23,806 adding 'pmx/scripts/build_cyclic_top.py' 2023-07-06T09:43:23,807 adding 'pmx/scripts/cli.py' 2023-07-06T09:43:23,809 adding 'pmx/scripts/gen_abs_restraints.py' 2023-07-06T09:43:23,816 adding 'pmx/scripts/generate_hybrid_residue.py' 2023-07-06T09:43:23,818 adding 'pmx/scripts/generate_hybrid_topology.py' 2023-07-06T09:43:23,820 adding 'pmx/scripts/ligandHybrid.py' 2023-07-06T09:43:23,822 adding 'pmx/scripts/make_double_box.py' 2023-07-06T09:43:23,824 adding 'pmx/scripts/md_setup.py' 2023-07-06T09:43:23,827 adding 'pmx/scripts/mutate.py' 2023-07-06T09:43:23,833 adding 'pmx/scripts/parameterize_ligands.py' 2023-07-06T09:43:23,835 adding 'pmx/scripts/prepare_crooks_runs.py' 2023-07-06T09:43:23,836 adding 'pmx/scripts/set_gmxlib.py' 2023-07-06T09:43:23,838 adding 'pmx/scripts/setup_abfe.py' 2023-07-06T09:43:23,840 adding 'pmx/scripts/icolos_entrypoints/__init__.py' 2023-07-06T09:43:23,842 adding 'pmx/scripts/icolos_entrypoints/assemble_systems.py' 2023-07-06T09:43:23,845 adding 'pmx_biobb-4.1.3.dist-info/LICENSE' 2023-07-06T09:43:23,846 adding 'pmx_biobb-4.1.3.dist-info/METADATA' 2023-07-06T09:43:23,847 adding 'pmx_biobb-4.1.3.dist-info/WHEEL' 2023-07-06T09:43:23,848 adding 'pmx_biobb-4.1.3.dist-info/entry_points.txt' 2023-07-06T09:43:23,849 adding 'pmx_biobb-4.1.3.dist-info/top_level.txt' 2023-07-06T09:43:23,854 adding 'pmx_biobb-4.1.3.dist-info/RECORD' 2023-07-06T09:43:23,924 removing build/bdist.linux-armv7l/wheel 2023-07-06T09:43:24,107 Building wheel for pmx-biobb (setup.py): finished with status 'done' 2023-07-06T09:43:24,168 Created wheel for pmx-biobb: filename=pmx_biobb-4.1.3-cp39-cp39-linux_armv7l.whl size=5929675 sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 2023-07-06T09:43:24,169 Stored in directory: /tmp/pip-ephem-wheel-cache-v3xfu64t/wheels/9c/fc/d1/ca33a4f328f92f4201be2598fd6d8e9bc5cfdc7d0b1594355c 2023-07-06T09:43:24,191 Successfully built pmx-biobb 2023-07-06T09:43:24,326 Removed build tracker: '/tmp/pip-build-tracker-ipu64ynf'