2023-07-06T16:32:08,464 Created temporary directory: /tmp/pip-build-tracker-_60lzpve 2023-07-06T16:32:08,468 Initialized build tracking at /tmp/pip-build-tracker-_60lzpve 2023-07-06T16:32:08,468 Created build tracker: /tmp/pip-build-tracker-_60lzpve 2023-07-06T16:32:08,468 Entered build tracker: /tmp/pip-build-tracker-_60lzpve 2023-07-06T16:32:08,470 Created temporary directory: /tmp/pip-wheel-mmz8c3t1 2023-07-06T16:32:08,478 Created temporary directory: /tmp/pip-ephem-wheel-cache-tsm30hat 2023-07-06T16:32:08,536 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-06T16:32:08,543 2 location(s) to search for versions of abutils: 2023-07-06T16:32:08,543 * https://pypi.org/simple/abutils/ 2023-07-06T16:32:08,543 * https://www.piwheels.org/simple/abutils/ 2023-07-06T16:32:08,544 Fetching project page and analyzing links: https://pypi.org/simple/abutils/ 2023-07-06T16:32:08,545 Getting page https://pypi.org/simple/abutils/ 2023-07-06T16:32:08,550 Found index url https://pypi.org/simple/ 2023-07-06T16:32:08,749 Fetched page https://pypi.org/simple/abutils/ as application/vnd.pypi.simple.v1+json 2023-07-06T16:32:08,768 Found link https://files.pythonhosted.org/packages/50/68/e90af4390a5bf4ae7f4d4c320618c21938407e2cbccb1d8eb9e2128129f7/abutils-0.0.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.1 2023-07-06T16:32:08,769 Found link https://files.pythonhosted.org/packages/2a/34/20450169e044c8a5b3f0789cb6792ac3f0d94ee7314aecda4332460d3996/abutils-0.0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.2 2023-07-06T16:32:08,770 Found link https://files.pythonhosted.org/packages/e7/0b/92eacaadffa6dbe5536af17cd2288991862e5ca8a5193bc3f5f0c511939b/abutils-0.0.3.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.3 2023-07-06T16:32:08,770 Found link https://files.pythonhosted.org/packages/66/9c/c88a230d9a7df70ed076345a5697bffbac79affa98de6bc7335cbe399508/abutils-0.0.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.4 2023-07-06T16:32:08,771 Found link https://files.pythonhosted.org/packages/36/3e/e6b030787fca71eedbaaa8be3b8b0169a655c7403622bc0c418918121b72/abutils-0.0.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.5 2023-07-06T16:32:08,772 Found link https://files.pythonhosted.org/packages/c2/4b/a1c076b09bf2ab1f5545d0f9fe05c7861166c49ea9846f2d72f6306e792c/abutils-0.0.6.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.6 2023-07-06T16:32:08,772 Found link https://files.pythonhosted.org/packages/ba/48/ccd3a0f5de7c0b2857f163b24120b027f9b2d88b5b8898646a6126d2ce6b/abutils-0.0.7.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.7 2023-07-06T16:32:08,773 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/8e/ba/0b774748bc954d98e3246982d1017d09459ecbc21a76628161aa49d4e3fc/abutils-0.1.0-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-07-06T16:32:08,774 Found link 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https://files.pythonhosted.org/packages/58/06/198c2161367eed257bbbc6295af2f6bd9148bccd26f67535bd07d1974dfb/abutils-0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2 2023-07-06T16:32:08,777 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/e9/6b/41bd824641aee954bdc00d6fcc3d7f411af32a68acdbb7330c59d7fab67f/abutils-0.2.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-07-06T16:32:08,777 Found link https://files.pythonhosted.org/packages/c3/51/083596ecb529073ccc5142ffe85766aef208bd4d6925da8f771f6f95e256/abutils-0.2.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.1 2023-07-06T16:32:08,778 Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/94/cf/ae1ab5392b0f34c874cc8388d4df2985a2fc02d63dedcad0c2f4ca4b92bd/abutils-0.2.2-py3-none-any.whl (from https://pypi.org/simple/abutils/) 2023-07-06T16:32:08,778 Found link 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https://files.pythonhosted.org/packages/0b/fb/21d3594c4fe0ce1e7b035808b68c73e6a14eef95fb27fb27e45cb50ecf18/abutils-0.3.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.3.1 2023-07-06T16:32:08,793 Fetching project page and analyzing links: https://www.piwheels.org/simple/abutils/ 2023-07-06T16:32:08,793 Getting page https://www.piwheels.org/simple/abutils/ 2023-07-06T16:32:08,796 Found index url https://www.piwheels.org/simple/ 2023-07-06T16:32:09,017 Fetched page https://www.piwheels.org/simple/abutils/ as text/html 2023-07-06T16:32:09,033 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.3.0-py3-none-any.whl#sha256=4260a96c149498cd519f4d6dbcbb5075a0b7cd820b16bec4cd6eafe452f6e7a6 (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,033 Skipping link: No binaries permitted for abutils: 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2023-07-06T16:32:09,035 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.6-py3-none-any.whl#sha256=38b1c0070e0f5764ee6ffad6eadde071a320f0eb3372912678767047c9136880 (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,036 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.5-py3-none-any.whl#sha256=132b4af2881b535924c6b615f7e0dca8d858a65db5ce7f600425f0afa220e942 (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,036 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.2.4-py3-none-any.whl#sha256=b7cc50211227f95b0544149ddb49e17cf733ece77b8531c94bcdebabef433b03 (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,037 Skipping link: No binaries permitted for abutils: 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2023-07-06T16:32:09,039 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.1.1-py3-none-any.whl#sha256=e848425dd30ebba12d526963aed48ce2705734d49626dcc0c01e60813ce6cf98 (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,040 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.1.0-py3-none-any.whl#sha256=4546e6994f84194f448c4af73e9ac961b6cee59d5825bce6b688a7eb31f173f8 (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,040 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.7-py3-none-any.whl#sha256=54b0191660cee12eae66a1c9a280779122ee367b18dc31f5386ed7d9695ba86d (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,041 Skipping link: No binaries permitted for abutils: 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2023-07-06T16:32:09,043 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.2-py3-none-any.whl#sha256=fb1485c1bdfebb4961c6b63db9ae9c45af6af544bf5a1d88830bff9601c333f7 (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,043 Skipping link: No binaries permitted for abutils: https://www.piwheels.org/simple/abutils/abutils-0.0.1-py3-none-any.whl#sha256=80befe258b5d18e6293ffa5f53b4c6fca19cd9c57418df3ad521a374f3827c35 (from https://www.piwheels.org/simple/abutils/) 2023-07-06T16:32:09,044 Skipping link: not a file: https://www.piwheels.org/simple/abutils/ 2023-07-06T16:32:09,044 Skipping link: not a file: https://pypi.org/simple/abutils/ 2023-07-06T16:32:09,084 Given no hashes to check 1 links for project 'abutils': discarding no candidates 2023-07-06T16:32:09,119 Collecting abutils==0.3.1 2023-07-06T16:32:09,124 Created temporary directory: /tmp/pip-unpack-0_lnm31y 2023-07-06T16:32:09,414 Downloading abutils-0.3.1.tar.gz (20.2 MB) 2023-07-06T16:32:20,665 Added abutils==0.3.1 from https://files.pythonhosted.org/packages/0b/fb/21d3594c4fe0ce1e7b035808b68c73e6a14eef95fb27fb27e45cb50ecf18/abutils-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-_60lzpve' 2023-07-06T16:32:20,670 Running setup.py (path:/tmp/pip-wheel-mmz8c3t1/abutils_e1d3b7b088a842068684625b26e6ed6c/setup.py) egg_info for package abutils 2023-07-06T16:32:20,671 Created temporary directory: /tmp/pip-pip-egg-info-jm_458t6 2023-07-06T16:32:20,672 Preparing metadata (setup.py): started 2023-07-06T16:32:20,674 Running command python setup.py egg_info 2023-07-06T16:32:24,133 running egg_info 2023-07-06T16:32:24,136 creating /tmp/pip-pip-egg-info-jm_458t6/abutils.egg-info 2023-07-06T16:32:24,200 writing /tmp/pip-pip-egg-info-jm_458t6/abutils.egg-info/PKG-INFO 2023-07-06T16:32:24,204 writing dependency_links to /tmp/pip-pip-egg-info-jm_458t6/abutils.egg-info/dependency_links.txt 2023-07-06T16:32:24,209 writing requirements to /tmp/pip-pip-egg-info-jm_458t6/abutils.egg-info/requires.txt 2023-07-06T16:32:24,211 writing top-level names to /tmp/pip-pip-egg-info-jm_458t6/abutils.egg-info/top_level.txt 2023-07-06T16:32:24,214 writing manifest file '/tmp/pip-pip-egg-info-jm_458t6/abutils.egg-info/SOURCES.txt' 2023-07-06T16:32:24,415 reading manifest file '/tmp/pip-pip-egg-info-jm_458t6/abutils.egg-info/SOURCES.txt' 2023-07-06T16:32:24,418 reading manifest template 'MANIFEST.in' 2023-07-06T16:32:24,431 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-06T16:32:24,432 !! 2023-07-06T16:32:24,433 ******************************************************************************** 2023-07-06T16:32:24,433 Usage of dash-separated 'description-file' will not be supported in future 2023-07-06T16:32:24,433 versions. Please use the underscore name 'description_file' instead. 2023-07-06T16:32:24,434 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-06T16:32:24,434 or your builds will no longer be supported. 2023-07-06T16:32:24,435 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-06T16:32:24,435 ******************************************************************************** 2023-07-06T16:32:24,436 !! 2023-07-06T16:32:24,436 opt = self.warn_dash_deprecation(opt, section) 2023-07-06T16:32:24,436 warning: no files found matching 'abutils/tenx/*' 2023-07-06T16:32:24,439 adding license file 'LICENSE' 2023-07-06T16:32:24,449 writing manifest file '/tmp/pip-pip-egg-info-jm_458t6/abutils.egg-info/SOURCES.txt' 2023-07-06T16:32:24,752 Preparing metadata (setup.py): finished with status 'done' 2023-07-06T16:32:24,766 Source in /tmp/pip-wheel-mmz8c3t1/abutils_e1d3b7b088a842068684625b26e6ed6c has version 0.3.1, which satisfies requirement abutils==0.3.1 from https://files.pythonhosted.org/packages/0b/fb/21d3594c4fe0ce1e7b035808b68c73e6a14eef95fb27fb27e45cb50ecf18/abutils-0.3.1.tar.gz 2023-07-06T16:32:24,768 Removed abutils==0.3.1 from https://files.pythonhosted.org/packages/0b/fb/21d3594c4fe0ce1e7b035808b68c73e6a14eef95fb27fb27e45cb50ecf18/abutils-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-_60lzpve' 2023-07-06T16:32:24,779 Created temporary directory: /tmp/pip-unpack-x9fxosee 2023-07-06T16:32:24,780 Building wheels for collected packages: abutils 2023-07-06T16:32:24,789 Created temporary directory: /tmp/pip-wheel-51f5vsjs 2023-07-06T16:32:24,790 Building wheel for abutils (setup.py): started 2023-07-06T16:32:24,792 Destination directory: /tmp/pip-wheel-51f5vsjs 2023-07-06T16:32:24,793 Running command python setup.py bdist_wheel 2023-07-06T16:32:27,882 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-06T16:32:27,883 !! 2023-07-06T16:32:27,884 ******************************************************************************** 2023-07-06T16:32:27,884 Usage of dash-separated 'description-file' will not be supported in future 2023-07-06T16:32:27,885 versions. Please use the underscore name 'description_file' instead. 2023-07-06T16:32:27,885 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-06T16:32:27,886 or your builds will no longer be supported. 2023-07-06T16:32:27,886 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-06T16:32:27,887 ******************************************************************************** 2023-07-06T16:32:27,887 !! 2023-07-06T16:32:27,888 opt = self.warn_dash_deprecation(opt, section) 2023-07-06T16:32:28,326 running bdist_wheel 2023-07-06T16:32:29,534 running build 2023-07-06T16:32:29,535 running build_py 2023-07-06T16:32:29,607 creating build 2023-07-06T16:32:29,608 creating build/lib 2023-07-06T16:32:29,610 creating build/lib/abutils 2023-07-06T16:32:29,612 copying abutils/tl.py -> build/lib/abutils 2023-07-06T16:32:29,615 copying abutils/version.py -> build/lib/abutils 2023-07-06T16:32:29,619 copying abutils/__init__.py -> build/lib/abutils 2023-07-06T16:32:29,622 copying abutils/io.py -> build/lib/abutils 2023-07-06T16:32:29,625 copying abutils/pl.py -> build/lib/abutils 2023-07-06T16:32:29,628 running egg_info 2023-07-06T16:32:29,774 writing abutils.egg-info/PKG-INFO 2023-07-06T16:32:29,778 writing dependency_links to abutils.egg-info/dependency_links.txt 2023-07-06T16:32:29,782 writing requirements to abutils.egg-info/requires.txt 2023-07-06T16:32:29,785 writing top-level names to abutils.egg-info/top_level.txt 2023-07-06T16:32:29,854 reading manifest file 'abutils.egg-info/SOURCES.txt' 2023-07-06T16:32:29,862 reading manifest template 'MANIFEST.in' 2023-07-06T16:32:29,872 warning: no files found matching 'abutils/tenx/*' 2023-07-06T16:32:29,878 adding license file 'LICENSE' 2023-07-06T16:32:29,890 writing manifest file 'abutils.egg-info/SOURCES.txt' 2023-07-06T16:32:29,896 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.bin' is absent from the `packages` configuration. 2023-07-06T16:32:29,896 !! 2023-07-06T16:32:29,897 ******************************************************************************** 2023-07-06T16:32:29,897 ############################ 2023-07-06T16:32:29,897 # Package would be ignored # 2023-07-06T16:32:29,898 ############################ 2023-07-06T16:32:29,898 Python recognizes 'abutils.bin' as an importable package[^1], 2023-07-06T16:32:29,898 but it is absent from setuptools' `packages` configuration. 2023-07-06T16:32:29,899 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T16:32:29,899 package, please make sure that 'abutils.bin' is explicitly added 2023-07-06T16:32:29,900 to the `packages` configuration field. 2023-07-06T16:32:29,900 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T16:32:29,900 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T16:32:29,901 instead of `find_packages(...)`/`find:`). 2023-07-06T16:32:29,901 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T16:32:29,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T16:32:29,903 If you don't want 'abutils.bin' to be distributed and are 2023-07-06T16:32:29,903 already explicitly excluding 'abutils.bin' via 2023-07-06T16:32:29,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T16:32:29,903 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T16:32:29,904 combination with a more fine grained `package-data` configuration. 2023-07-06T16:32:29,904 You can read more about "package data files" on setuptools documentation page: 2023-07-06T16:32:29,905 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T16:32:29,906 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T16:32:29,906 even if it does not contain any `.py` files. 2023-07-06T16:32:29,907 On the other hand, currently there is no concept of package data 2023-07-06T16:32:29,907 directory, all directories are treated like packages. 2023-07-06T16:32:29,907 ******************************************************************************** 2023-07-06T16:32:29,908 !! 2023-07-06T16:32:29,908 check.warn(importable) 2023-07-06T16:32:29,909 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.core' is absent from the `packages` configuration. 2023-07-06T16:32:29,909 !! 2023-07-06T16:32:29,910 ******************************************************************************** 2023-07-06T16:32:29,910 ############################ 2023-07-06T16:32:29,911 # Package would be ignored # 2023-07-06T16:32:29,911 ############################ 2023-07-06T16:32:29,911 Python recognizes 'abutils.core' as an importable package[^1], 2023-07-06T16:32:29,911 but it is absent from setuptools' `packages` configuration. 2023-07-06T16:32:29,912 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T16:32:29,912 package, please make sure that 'abutils.core' is explicitly added 2023-07-06T16:32:29,913 to the `packages` configuration field. 2023-07-06T16:32:29,913 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T16:32:29,913 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T16:32:29,914 instead of `find_packages(...)`/`find:`). 2023-07-06T16:32:29,914 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T16:32:29,915 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T16:32:29,915 If you don't want 'abutils.core' to be distributed and are 2023-07-06T16:32:29,916 already explicitly excluding 'abutils.core' via 2023-07-06T16:32:29,916 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T16:32:29,916 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T16:32:29,917 combination with a more fine grained `package-data` configuration. 2023-07-06T16:32:29,917 You can read more about "package data files" on setuptools documentation page: 2023-07-06T16:32:29,918 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T16:32:29,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T16:32:29,919 even if it does not contain any `.py` files. 2023-07-06T16:32:29,919 On the other hand, currently there is no concept of package data 2023-07-06T16:32:29,920 directory, all directories are treated like packages. 2023-07-06T16:32:29,920 ******************************************************************************** 2023-07-06T16:32:29,920 !! 2023-07-06T16:32:29,921 check.warn(importable) 2023-07-06T16:32:29,921 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.plots' is absent from the `packages` configuration. 2023-07-06T16:32:29,921 !! 2023-07-06T16:32:29,922 ******************************************************************************** 2023-07-06T16:32:29,922 ############################ 2023-07-06T16:32:29,923 # Package would be ignored # 2023-07-06T16:32:29,923 ############################ 2023-07-06T16:32:29,923 Python recognizes 'abutils.plots' as an importable package[^1], 2023-07-06T16:32:29,924 but it is absent from setuptools' `packages` configuration. 2023-07-06T16:32:29,924 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T16:32:29,925 package, please make sure that 'abutils.plots' is explicitly added 2023-07-06T16:32:29,925 to the `packages` configuration field. 2023-07-06T16:32:29,926 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T16:32:29,926 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T16:32:29,926 instead of `find_packages(...)`/`find:`). 2023-07-06T16:32:29,927 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T16:32:29,927 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T16:32:29,934 If you don't want 'abutils.plots' to be distributed and are 2023-07-06T16:32:29,934 already explicitly excluding 'abutils.plots' via 2023-07-06T16:32:29,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T16:32:29,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T16:32:29,935 combination with a more fine grained `package-data` configuration. 2023-07-06T16:32:29,936 You can read more about "package data files" on setuptools documentation page: 2023-07-06T16:32:29,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T16:32:29,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T16:32:29,938 even if it does not contain any `.py` files. 2023-07-06T16:32:29,939 On the other hand, currently there is no concept of package data 2023-07-06T16:32:29,940 directory, all directories are treated like packages. 2023-07-06T16:32:29,941 ******************************************************************************** 2023-07-06T16:32:29,943 !! 2023-07-06T16:32:29,944 check.warn(importable) 2023-07-06T16:32:29,945 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.tools' is absent from the `packages` configuration. 2023-07-06T16:32:29,945 !! 2023-07-06T16:32:29,946 ******************************************************************************** 2023-07-06T16:32:29,948 ############################ 2023-07-06T16:32:29,949 # Package would be ignored # 2023-07-06T16:32:29,949 ############################ 2023-07-06T16:32:29,950 Python recognizes 'abutils.tools' as an importable package[^1], 2023-07-06T16:32:29,950 but it is absent from setuptools' `packages` configuration. 2023-07-06T16:32:29,951 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T16:32:29,951 package, please make sure that 'abutils.tools' is explicitly added 2023-07-06T16:32:29,951 to the `packages` configuration field. 2023-07-06T16:32:29,952 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T16:32:29,952 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T16:32:29,953 instead of `find_packages(...)`/`find:`). 2023-07-06T16:32:29,953 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T16:32:29,954 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T16:32:29,955 If you don't want 'abutils.tools' to be distributed and are 2023-07-06T16:32:29,955 already explicitly excluding 'abutils.tools' via 2023-07-06T16:32:29,955 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T16:32:29,955 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T16:32:29,956 combination with a more fine grained `package-data` configuration. 2023-07-06T16:32:29,959 You can read more about "package data files" on setuptools documentation page: 2023-07-06T16:32:29,960 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T16:32:29,961 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T16:32:29,961 even if it does not contain any `.py` files. 2023-07-06T16:32:29,962 On the other hand, currently there is no concept of package data 2023-07-06T16:32:29,962 directory, all directories are treated like packages. 2023-07-06T16:32:29,962 ******************************************************************************** 2023-07-06T16:32:29,963 !! 2023-07-06T16:32:29,963 check.warn(importable) 2023-07-06T16:32:29,964 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.utils' is absent from the `packages` configuration. 2023-07-06T16:32:29,964 !! 2023-07-06T16:32:29,965 ******************************************************************************** 2023-07-06T16:32:29,965 ############################ 2023-07-06T16:32:29,965 # Package would be ignored # 2023-07-06T16:32:29,966 ############################ 2023-07-06T16:32:29,966 Python recognizes 'abutils.utils' as an importable package[^1], 2023-07-06T16:32:29,966 but it is absent from setuptools' `packages` configuration. 2023-07-06T16:32:29,967 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T16:32:29,967 package, please make sure that 'abutils.utils' is explicitly added 2023-07-06T16:32:29,968 to the `packages` configuration field. 2023-07-06T16:32:29,968 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T16:32:29,969 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T16:32:29,969 instead of `find_packages(...)`/`find:`). 2023-07-06T16:32:29,970 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T16:32:29,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T16:32:29,971 If you don't want 'abutils.utils' to be distributed and are 2023-07-06T16:32:29,971 already explicitly excluding 'abutils.utils' via 2023-07-06T16:32:29,971 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T16:32:29,972 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T16:32:29,972 combination with a more fine grained `package-data` configuration. 2023-07-06T16:32:29,973 You can read more about "package data files" on setuptools documentation page: 2023-07-06T16:32:29,973 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T16:32:29,974 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T16:32:29,975 even if it does not contain any `.py` files. 2023-07-06T16:32:29,975 On the other hand, currently there is no concept of package data 2023-07-06T16:32:29,975 directory, all directories are treated like packages. 2023-07-06T16:32:29,976 ******************************************************************************** 2023-07-06T16:32:29,976 !! 2023-07-06T16:32:29,976 check.warn(importable) 2023-07-06T16:32:29,977 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'abutils.utils.matrices' is absent from the `packages` configuration. 2023-07-06T16:32:29,977 !! 2023-07-06T16:32:29,978 ******************************************************************************** 2023-07-06T16:32:29,978 ############################ 2023-07-06T16:32:29,978 # Package would be ignored # 2023-07-06T16:32:29,979 ############################ 2023-07-06T16:32:29,979 Python recognizes 'abutils.utils.matrices' as an importable package[^1], 2023-07-06T16:32:29,979 but it is absent from setuptools' `packages` configuration. 2023-07-06T16:32:29,980 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T16:32:29,980 package, please make sure that 'abutils.utils.matrices' is explicitly added 2023-07-06T16:32:29,981 to the `packages` configuration field. 2023-07-06T16:32:29,981 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T16:32:29,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T16:32:29,982 instead of `find_packages(...)`/`find:`). 2023-07-06T16:32:29,983 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T16:32:29,983 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T16:32:29,984 If you don't want 'abutils.utils.matrices' to be distributed and are 2023-07-06T16:32:29,984 already explicitly excluding 'abutils.utils.matrices' via 2023-07-06T16:32:29,985 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T16:32:29,985 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T16:32:29,985 combination with a more fine grained `package-data` configuration. 2023-07-06T16:32:29,993 You can read more about "package data files" on setuptools documentation page: 2023-07-06T16:32:29,994 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T16:32:29,995 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T16:32:29,995 even if it does not contain any `.py` files. 2023-07-06T16:32:29,995 On the other hand, currently there is no concept of package data 2023-07-06T16:32:29,996 directory, all directories are treated like packages. 2023-07-06T16:32:29,996 ******************************************************************************** 2023-07-06T16:32:29,997 !! 2023-07-06T16:32:29,997 check.warn(importable) 2023-07-06T16:32:29,997 creating build/lib/abutils/bin 2023-07-06T16:32:29,998 copying abutils/bin/cdhit_darwin -> build/lib/abutils/bin 2023-07-06T16:32:29,998 copying abutils/bin/cdhit_linux -> build/lib/abutils/bin 2023-07-06T16:32:29,998 copying abutils/bin/fasttree_darwin -> build/lib/abutils/bin 2023-07-06T16:32:29,999 copying abutils/bin/fasttree_linux -> build/lib/abutils/bin 2023-07-06T16:32:29,999 copying abutils/bin/mafft_darwin -> build/lib/abutils/bin 2023-07-06T16:32:30,009 copying abutils/bin/mafft_linux -> build/lib/abutils/bin 2023-07-06T16:32:30,018 copying abutils/bin/mmseqs_darwin -> build/lib/abutils/bin 2023-07-06T16:32:30,335 copying abutils/bin/mmseqs_linux -> build/lib/abutils/bin 2023-07-06T16:32:32,021 copying abutils/bin/muscle3_darwin -> build/lib/abutils/bin 2023-07-06T16:32:32,046 copying abutils/bin/muscle3_linux -> build/lib/abutils/bin 2023-07-06T16:32:32,071 copying abutils/bin/muscle_darwin -> build/lib/abutils/bin 2023-07-06T16:32:32,122 copying abutils/bin/muscle_linux -> build/lib/abutils/bin 2023-07-06T16:32:32,261 copying abutils/bin/vsearch_darwin -> build/lib/abutils/bin 2023-07-06T16:32:32,287 copying abutils/bin/vsearch_linux -> build/lib/abutils/bin 2023-07-06T16:32:32,379 creating build/lib/abutils/core 2023-07-06T16:32:32,381 copying abutils/core/__init__.py -> build/lib/abutils/core 2023-07-06T16:32:32,386 copying abutils/core/lineage.py -> build/lib/abutils/core 2023-07-06T16:32:32,394 copying abutils/core/pair.py -> build/lib/abutils/core 2023-07-06T16:32:32,401 copying abutils/core/sequence.py -> build/lib/abutils/core 2023-07-06T16:32:32,408 creating build/lib/abutils/plots 2023-07-06T16:32:32,410 copying abutils/plots/__init__.py -> build/lib/abutils/plots 2023-07-06T16:32:32,414 copying abutils/plots/bar.py -> build/lib/abutils/plots 2023-07-06T16:32:32,420 copying abutils/plots/base.py -> build/lib/abutils/plots 2023-07-06T16:32:32,425 copying abutils/plots/data.py -> build/lib/abutils/plots 2023-07-06T16:32:32,431 copying abutils/plots/donut.py -> build/lib/abutils/plots 2023-07-06T16:32:32,438 copying abutils/plots/heatmap.py -> build/lib/abutils/plots 2023-07-06T16:32:32,443 copying abutils/plots/kde.py -> build/lib/abutils/plots 2023-07-06T16:32:32,453 copying abutils/plots/lineage.py -> build/lib/abutils/plots 2023-07-06T16:32:32,459 copying abutils/plots/ridge.py -> build/lib/abutils/plots 2023-07-06T16:32:32,465 copying abutils/plots/ring.py -> build/lib/abutils/plots 2023-07-06T16:32:32,471 copying abutils/plots/scatter.py -> build/lib/abutils/plots 2023-07-06T16:32:32,478 copying abutils/plots/summary.py -> build/lib/abutils/plots 2023-07-06T16:32:32,483 copying abutils/plots/utils.py -> build/lib/abutils/plots 2023-07-06T16:32:32,488 creating build/lib/abutils/tools 2023-07-06T16:32:32,490 copying abutils/tools/__init__.py -> build/lib/abutils/tools 2023-07-06T16:32:32,494 copying abutils/tools/alignment.py -> build/lib/abutils/tools 2023-07-06T16:32:32,502 copying abutils/tools/clonify.py -> build/lib/abutils/tools 2023-07-06T16:32:32,508 copying abutils/tools/cluster.py -> build/lib/abutils/tools 2023-07-06T16:32:32,514 copying abutils/tools/phylo.py -> build/lib/abutils/tools 2023-07-06T16:32:32,521 creating build/lib/abutils/utils 2023-07-06T16:32:32,523 copying abutils/utils/__init__.py -> build/lib/abutils/utils 2023-07-06T16:32:32,528 copying abutils/utils/alignment.py -> build/lib/abutils/utils 2023-07-06T16:32:32,537 copying abutils/utils/circos.py -> build/lib/abutils/utils 2023-07-06T16:32:32,541 copying abutils/utils/cluster.py -> build/lib/abutils/utils 2023-07-06T16:32:32,548 copying abutils/utils/codons.py -> build/lib/abutils/utils 2023-07-06T16:32:32,552 copying abutils/utils/color.py -> build/lib/abutils/utils 2023-07-06T16:32:32,558 copying abutils/utils/convert.py -> build/lib/abutils/utils 2023-07-06T16:32:32,562 copying abutils/utils/database.py -> build/lib/abutils/utils 2023-07-06T16:32:32,568 copying abutils/utils/decorators.py -> build/lib/abutils/utils 2023-07-06T16:32:32,572 copying abutils/utils/germlines.py -> build/lib/abutils/utils 2023-07-06T16:32:32,579 copying abutils/utils/jobs.py -> build/lib/abutils/utils 2023-07-06T16:32:32,583 copying abutils/utils/log.py -> build/lib/abutils/utils 2023-07-06T16:32:32,589 copying abutils/utils/mongodb.py -> build/lib/abutils/utils 2023-07-06T16:32:32,594 copying abutils/utils/phylogeny.py -> build/lib/abutils/utils 2023-07-06T16:32:32,601 copying abutils/utils/pipeline.py -> build/lib/abutils/utils 2023-07-06T16:32:32,605 copying abutils/utils/progbar.py -> build/lib/abutils/utils 2023-07-06T16:32:32,610 copying abutils/utils/s3.py -> build/lib/abutils/utils 2023-07-06T16:32:32,615 copying abutils/utils/seqio.py -> build/lib/abutils/utils 2023-07-06T16:32:32,621 copying abutils/utils/ssh_tunnel.py -> build/lib/abutils/utils 2023-07-06T16:32:32,626 copying abutils/utils/utilities.py -> build/lib/abutils/utils 2023-07-06T16:32:32,631 creating build/lib/abutils/utils/matrices 2023-07-06T16:32:32,632 copying abutils/utils/matrices/blosum62 -> build/lib/abutils/utils/matrices 2023-07-06T16:32:32,637 copying abutils/utils/matrices/match1mismatch0 -> build/lib/abutils/utils/matrices 2023-07-06T16:32:32,642 copying abutils/utils/matrices/match3mismatch2 -> build/lib/abutils/utils/matrices 2023-07-06T16:32:32,715 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-06T16:32:32,715 !! 2023-07-06T16:32:32,716 ******************************************************************************** 2023-07-06T16:32:32,716 Please avoid running ``setup.py`` directly. 2023-07-06T16:32:32,717 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-06T16:32:32,717 other standards-based tools. 2023-07-06T16:32:32,718 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-06T16:32:32,718 ******************************************************************************** 2023-07-06T16:32:32,719 !! 2023-07-06T16:32:32,719 self.initialize_options() 2023-07-06T16:32:32,781 installing to build/bdist.linux-armv7l/wheel 2023-07-06T16:32:32,781 running install 2023-07-06T16:32:32,842 running install_lib 2023-07-06T16:32:32,909 creating build/bdist.linux-armv7l 2023-07-06T16:32:32,910 creating build/bdist.linux-armv7l/wheel 2023-07-06T16:32:32,914 creating build/bdist.linux-armv7l/wheel/abutils 2023-07-06T16:32:32,916 copying build/lib/abutils/tl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-07-06T16:32:32,920 copying build/lib/abutils/version.py -> build/bdist.linux-armv7l/wheel/abutils 2023-07-06T16:32:32,924 creating build/bdist.linux-armv7l/wheel/abutils/core 2023-07-06T16:32:32,926 copying build/lib/abutils/core/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-07-06T16:32:32,932 copying build/lib/abutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-07-06T16:32:32,936 copying build/lib/abutils/core/pair.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-07-06T16:32:32,942 copying build/lib/abutils/core/sequence.py -> build/bdist.linux-armv7l/wheel/abutils/core 2023-07-06T16:32:32,948 creating build/bdist.linux-armv7l/wheel/abutils/tools 2023-07-06T16:32:32,950 copying build/lib/abutils/tools/phylo.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-07-06T16:32:32,957 copying build/lib/abutils/tools/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-07-06T16:32:32,960 copying build/lib/abutils/tools/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-07-06T16:32:32,966 copying build/lib/abutils/tools/clonify.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-07-06T16:32:32,971 copying build/lib/abutils/tools/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/tools 2023-07-06T16:32:32,977 copying build/lib/abutils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils 2023-07-06T16:32:32,982 creating build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:32,984 copying build/lib/abutils/plots/kde.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:32,991 copying build/lib/abutils/plots/donut.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:32,997 copying build/lib/abutils/plots/summary.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,002 copying build/lib/abutils/plots/bar.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,007 copying build/lib/abutils/plots/lineage.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,012 copying build/lib/abutils/plots/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,015 copying build/lib/abutils/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,019 copying build/lib/abutils/plots/data.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,023 copying build/lib/abutils/plots/scatter.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,029 copying build/lib/abutils/plots/ring.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,034 copying build/lib/abutils/plots/utils.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,038 copying build/lib/abutils/plots/ridge.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,042 copying build/lib/abutils/plots/base.py -> build/bdist.linux-armv7l/wheel/abutils/plots 2023-07-06T16:32:33,048 creating build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,050 copying build/lib/abutils/bin/cdhit_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,063 copying build/lib/abutils/bin/muscle_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,119 copying build/lib/abutils/bin/muscle3_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,143 copying build/lib/abutils/bin/muscle_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,263 copying build/lib/abutils/bin/vsearch_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,368 copying build/lib/abutils/bin/muscle3_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,389 copying build/lib/abutils/bin/mmseqs_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,755 copying build/lib/abutils/bin/mafft_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,763 copying build/lib/abutils/bin/cdhit_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,773 copying build/lib/abutils/bin/vsearch_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,802 copying build/lib/abutils/bin/fasttree_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,827 copying build/lib/abutils/bin/mafft_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,837 copying build/lib/abutils/bin/fasttree_darwin -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:33,856 copying build/lib/abutils/bin/mmseqs_linux -> build/bdist.linux-armv7l/wheel/abutils/bin 2023-07-06T16:32:35,594 copying build/lib/abutils/io.py -> build/bdist.linux-armv7l/wheel/abutils 2023-07-06T16:32:35,600 creating build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,602 copying build/lib/abutils/utils/convert.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,606 copying build/lib/abutils/utils/mongodb.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,611 copying build/lib/abutils/utils/s3.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,616 copying build/lib/abutils/utils/pipeline.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,622 creating build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-07-06T16:32:35,623 copying build/lib/abutils/utils/matrices/match1mismatch0 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-07-06T16:32:35,628 copying build/lib/abutils/utils/matrices/blosum62 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-07-06T16:32:35,632 copying build/lib/abutils/utils/matrices/match3mismatch2 -> build/bdist.linux-armv7l/wheel/abutils/utils/matrices 2023-07-06T16:32:35,636 copying build/lib/abutils/utils/utilities.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,640 copying build/lib/abutils/utils/phylogeny.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,646 copying build/lib/abutils/utils/ssh_tunnel.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,650 copying build/lib/abutils/utils/germlines.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,656 copying build/lib/abutils/utils/progbar.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,660 copying build/lib/abutils/utils/codons.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,664 copying build/lib/abutils/utils/decorators.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,668 copying build/lib/abutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,673 copying build/lib/abutils/utils/log.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,678 copying build/lib/abutils/utils/color.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,683 copying build/lib/abutils/utils/database.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,689 copying build/lib/abutils/utils/alignment.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,698 copying build/lib/abutils/utils/circos.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,702 copying build/lib/abutils/utils/jobs.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,707 copying build/lib/abutils/utils/seqio.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,712 copying build/lib/abutils/utils/cluster.py -> build/bdist.linux-armv7l/wheel/abutils/utils 2023-07-06T16:32:35,719 copying build/lib/abutils/pl.py -> build/bdist.linux-armv7l/wheel/abutils 2023-07-06T16:32:35,723 running install_egg_info 2023-07-06T16:32:35,793 Copying abutils.egg-info to build/bdist.linux-armv7l/wheel/abutils-0.3.1-py3.7.egg-info 2023-07-06T16:32:35,814 running install_scripts 2023-07-06T16:32:35,855 creating build/bdist.linux-armv7l/wheel/abutils-0.3.1.dist-info/WHEEL 2023-07-06T16:32:35,861 creating '/tmp/pip-wheel-51f5vsjs/abutils-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-06T16:32:35,867 adding 'abutils/__init__.py' 2023-07-06T16:32:35,871 adding 'abutils/io.py' 2023-07-06T16:32:35,874 adding 'abutils/pl.py' 2023-07-06T16:32:35,877 adding 'abutils/tl.py' 2023-07-06T16:32:35,881 adding 'abutils/version.py' 2023-07-06T16:32:35,952 adding 'abutils/bin/cdhit_darwin' 2023-07-06T16:32:36,017 adding 'abutils/bin/cdhit_linux' 2023-07-06T16:32:36,126 adding 'abutils/bin/fasttree_darwin' 2023-07-06T16:32:36,308 adding 'abutils/bin/fasttree_linux' 2023-07-06T16:32:36,340 adding 'abutils/bin/mafft_darwin' 2023-07-06T16:32:36,362 adding 'abutils/bin/mafft_linux' 2023-07-06T16:32:39,206 adding 'abutils/bin/mmseqs_darwin' 2023-07-06T16:32:57,251 adding 'abutils/bin/mmseqs_linux' 2023-07-06T16:32:58,358 adding 'abutils/bin/muscle3_darwin' 2023-07-06T16:32:58,519 adding 'abutils/bin/muscle3_linux' 2023-07-06T16:32:58,971 adding 'abutils/bin/muscle_darwin' 2023-07-06T16:33:00,278 adding 'abutils/bin/muscle_linux' 2023-07-06T16:33:00,523 adding 'abutils/bin/vsearch_darwin' 2023-07-06T16:33:01,324 adding 'abutils/bin/vsearch_linux' 2023-07-06T16:33:01,368 adding 'abutils/core/__init__.py' 2023-07-06T16:33:01,380 adding 'abutils/core/lineage.py' 2023-07-06T16:33:01,388 adding 'abutils/core/pair.py' 2023-07-06T16:33:01,396 adding 'abutils/core/sequence.py' 2023-07-06T16:33:01,400 adding 'abutils/plots/__init__.py' 2023-07-06T16:33:01,405 adding 'abutils/plots/bar.py' 2023-07-06T16:33:01,409 adding 'abutils/plots/base.py' 2023-07-06T16:33:01,413 adding 'abutils/plots/data.py' 2023-07-06T16:33:01,420 adding 'abutils/plots/donut.py' 2023-07-06T16:33:01,423 adding 'abutils/plots/heatmap.py' 2023-07-06T16:33:01,437 adding 'abutils/plots/kde.py' 2023-07-06T16:33:01,442 adding 'abutils/plots/lineage.py' 2023-07-06T16:33:01,447 adding 'abutils/plots/ridge.py' 2023-07-06T16:33:01,450 adding 'abutils/plots/ring.py' 2023-07-06T16:33:01,458 adding 'abutils/plots/scatter.py' 2023-07-06T16:33:01,463 adding 'abutils/plots/summary.py' 2023-07-06T16:33:01,465 adding 'abutils/plots/utils.py' 2023-07-06T16:33:01,469 adding 'abutils/tools/__init__.py' 2023-07-06T16:33:01,479 adding 'abutils/tools/alignment.py' 2023-07-06T16:33:01,485 adding 'abutils/tools/clonify.py' 2023-07-06T16:33:01,490 adding 'abutils/tools/cluster.py' 2023-07-06T16:33:01,500 adding 'abutils/tools/phylo.py' 2023-07-06T16:33:01,505 adding 'abutils/utils/__init__.py' 2023-07-06T16:33:01,523 adding 'abutils/utils/alignment.py' 2023-07-06T16:33:01,527 adding 'abutils/utils/circos.py' 2023-07-06T16:33:01,538 adding 'abutils/utils/cluster.py' 2023-07-06T16:33:01,541 adding 'abutils/utils/codons.py' 2023-07-06T16:33:01,547 adding 'abutils/utils/color.py' 2023-07-06T16:33:01,550 adding 'abutils/utils/convert.py' 2023-07-06T16:33:01,555 adding 'abutils/utils/database.py' 2023-07-06T16:33:01,558 adding 'abutils/utils/decorators.py' 2023-07-06T16:33:01,562 adding 'abutils/utils/germlines.py' 2023-07-06T16:33:01,565 adding 'abutils/utils/jobs.py' 2023-07-06T16:33:01,568 adding 'abutils/utils/log.py' 2023-07-06T16:33:01,573 adding 'abutils/utils/mongodb.py' 2023-07-06T16:33:01,583 adding 'abutils/utils/phylogeny.py' 2023-07-06T16:33:01,587 adding 'abutils/utils/pipeline.py' 2023-07-06T16:33:01,591 adding 'abutils/utils/progbar.py' 2023-07-06T16:33:01,595 adding 'abutils/utils/s3.py' 2023-07-06T16:33:01,599 adding 'abutils/utils/seqio.py' 2023-07-06T16:33:01,602 adding 'abutils/utils/ssh_tunnel.py' 2023-07-06T16:33:01,605 adding 'abutils/utils/utilities.py' 2023-07-06T16:33:01,610 adding 'abutils/utils/matrices/blosum62' 2023-07-06T16:33:01,613 adding 'abutils/utils/matrices/match1mismatch0' 2023-07-06T16:33:01,615 adding 'abutils/utils/matrices/match3mismatch2' 2023-07-06T16:33:01,620 adding 'abutils-0.3.1.dist-info/LICENSE' 2023-07-06T16:33:01,622 adding 'abutils-0.3.1.dist-info/METADATA' 2023-07-06T16:33:01,624 adding 'abutils-0.3.1.dist-info/WHEEL' 2023-07-06T16:33:01,625 adding 'abutils-0.3.1.dist-info/top_level.txt' 2023-07-06T16:33:01,629 adding 'abutils-0.3.1.dist-info/RECORD' 2023-07-06T16:33:02,378 removing build/bdist.linux-armv7l/wheel 2023-07-06T16:33:02,801 Building wheel for abutils (setup.py): finished with status 'done' 2023-07-06T16:33:03,409 Created wheel for abutils: filename=abutils-0.3.1-py3-none-any.whl size=20379400 sha256=1fbfc14143d5e4d142be747c1c55e24411e9943441689f13193e8cc5a7e9ce11 2023-07-06T16:33:03,411 Stored in directory: /tmp/pip-ephem-wheel-cache-tsm30hat/wheels/b1/ad/a8/edfbbee42646c22115df422d4027333d1139291057b96eea42 2023-07-06T16:33:03,465 Successfully built abutils 2023-07-06T16:33:05,013 Removed build tracker: '/tmp/pip-build-tracker-_60lzpve'