2023-07-06T21:03:39,530 Created temporary directory: /tmp/pip-build-tracker-si93jgtd 2023-07-06T21:03:39,533 Initialized build tracking at /tmp/pip-build-tracker-si93jgtd 2023-07-06T21:03:39,533 Created build tracker: /tmp/pip-build-tracker-si93jgtd 2023-07-06T21:03:39,534 Entered build tracker: /tmp/pip-build-tracker-si93jgtd 2023-07-06T21:03:39,535 Created temporary directory: /tmp/pip-wheel-axp1ouf0 2023-07-06T21:03:39,544 Created temporary directory: /tmp/pip-ephem-wheel-cache-02mt7il5 2023-07-06T21:03:39,596 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-06T21:03:39,604 2 location(s) to search for versions of read-structure-step: 2023-07-06T21:03:39,604 * https://pypi.org/simple/read-structure-step/ 2023-07-06T21:03:39,604 * https://www.piwheels.org/simple/read-structure-step/ 2023-07-06T21:03:39,605 Fetching project page and analyzing links: https://pypi.org/simple/read-structure-step/ 2023-07-06T21:03:39,606 Getting page 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https://files.pythonhosted.org/packages/bc/b1/e203e7b9f210ccee0f0a20566c168c8648d96de1e44a629c84ffe8924e23/read_structure_step-2023.1.24.tar.gz (from https://pypi.org/simple/read-structure-step/), version: 2023.1.24 2023-07-06T21:03:39,855 Skipping link: No binaries permitted for read-structure-step: https://files.pythonhosted.org/packages/df/09/240ea11b6f86494a3ee4a3b72b7c5b09b1c72077d7b52da1d321891ff69a/read_structure_step-2023.1.27-py2.py3-none-any.whl (from https://pypi.org/simple/read-structure-step/) 2023-07-06T21:03:39,856 Found link https://files.pythonhosted.org/packages/18/b4/4ba96d9f67312bdc4ecd2b60357e315219f1a6fc86c350e636c8d648c1bc/read_structure_step-2023.1.27.tar.gz (from https://pypi.org/simple/read-structure-step/), version: 2023.1.27 2023-07-06T21:03:39,856 Skipping link: No binaries permitted for read-structure-step: https://files.pythonhosted.org/packages/8f/b6/3e00522c83363e20942b1fd4ba5cb4b5ac11b2a6909f8ae1f6ca736577c3/read_structure_step-2023.7.6-py2.py3-none-any.whl (from https://pypi.org/simple/read-structure-step/) 2023-07-06T21:03:39,857 Found link https://files.pythonhosted.org/packages/c9/dc/da4dcf0dbf84ebcfb7d7f48a22e5632ea8d1d930ffc891c1ccc099f3cf7a/read_structure_step-2023.7.6.tar.gz (from https://pypi.org/simple/read-structure-step/), version: 2023.7.6 2023-07-06T21:03:39,858 Fetching project page and analyzing links: https://www.piwheels.org/simple/read-structure-step/ 2023-07-06T21:03:39,859 Getting page https://www.piwheels.org/simple/read-structure-step/ 2023-07-06T21:03:39,861 Found index url https://www.piwheels.org/simple/ 2023-07-06T21:03:40,077 Fetched page https://www.piwheels.org/simple/read-structure-step/ as text/html 2023-07-06T21:03:40,094 Skipping link: No binaries permitted for read-structure-step: 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https://www.piwheels.org/simple/read-structure-step/read_structure_step-2022.5.7-py2.py3-none-any.whl#sha256=abc58c3c1af63faff19055d9473cabd037c67fcbb53f326e7a5be1c95a95675e (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,099 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2022.2.1-py2.py3-none-any.whl#sha256=3dbaf7f9640780d18dc1e629359b737709ef58973d943bc1faf602c71e5dc511 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,100 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2022.1.15-py2.py3-none-any.whl#sha256=70f637ed693090f12833df06484e201b11795009d71d4472351a2f928d9ed252 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,100 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2021.10.25-py2.py3-none-any.whl#sha256=4f35c10ac5df3c57ae960288ee32b942bb7dae1e6bb57ca85f8e8a3ce49cefb4 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,101 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2021.9.13-py2.py3-none-any.whl#sha256=3fcc962b50ecea6d9d53cf72e8aa346aeb50c64af95ff7377ea68901c53367e7 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,101 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2021.2.12-py2.py3-none-any.whl#sha256=a44b5e2dcefd89dfda519ff016b1da450d0ac9969f9d4bc37dc6e0c4a55c8216 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,102 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2021.2.4-py2.py3-none-any.whl#sha256=0583e26724aced3cecfa8c6a919e301c8736b029374e02a08025ac40150a2c72 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,102 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2020.12.5-py2.py3-none-any.whl#sha256=78b0af104c4c92d0ae78ec4eff5394ef7c773db0b8d81533ae3d226adc785d45 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,103 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-2020.8.1-py2.py3-none-any.whl#sha256=2441b05d0abfbb0995c083a05a38ac32ea0590ff49b56d15f085a2cb9c8b72a1 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,103 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-0.9-py2.py3-none-any.whl#sha256=882fc7efaba58ad2d767cb5f766abc05b8e0df787363a4dd53aaaa601939b8bc (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,104 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-0.8.0-py2.py3-none-any.whl#sha256=ae20bc216eb9b6d69544ee14674b0fe79722609b8217ce0ea3fcbcb8d0cbfdd9 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,104 Skipping link: No binaries permitted for read-structure-step: https://www.piwheels.org/simple/read-structure-step/read_structure_step-0.7.1-py2.py3-none-any.whl#sha256=d8729c1ccf4d8dbb6990e66dee11593fbb7918fa3b9eb3f34942e1fb55ced528 (from https://www.piwheels.org/simple/read-structure-step/) 2023-07-06T21:03:40,105 Skipping link: not a file: https://www.piwheels.org/simple/read-structure-step/ 2023-07-06T21:03:40,106 Skipping link: not a file: https://pypi.org/simple/read-structure-step/ 2023-07-06T21:03:40,146 Given no hashes to check 1 links for project 'read-structure-step': discarding no candidates 2023-07-06T21:03:40,180 Collecting read-structure-step==2023.7.6 2023-07-06T21:03:40,185 Created temporary directory: /tmp/pip-unpack-lkxhhn0o 2023-07-06T21:03:40,451 Downloading read_structure_step-2023.7.6.tar.gz (859 kB) 2023-07-06T21:03:41,226 Added read-structure-step==2023.7.6 from https://files.pythonhosted.org/packages/c9/dc/da4dcf0dbf84ebcfb7d7f48a22e5632ea8d1d930ffc891c1ccc099f3cf7a/read_structure_step-2023.7.6.tar.gz to build tracker '/tmp/pip-build-tracker-si93jgtd' 2023-07-06T21:03:41,230 Running setup.py (path:/tmp/pip-wheel-axp1ouf0/read-structure-step_3ace43070e6d449eba6ffb7c5e620cbf/setup.py) egg_info for package read-structure-step 2023-07-06T21:03:41,232 Created temporary directory: /tmp/pip-pip-egg-info-cuvgpruy 2023-07-06T21:03:41,232 Preparing metadata (setup.py): started 2023-07-06T21:03:41,234 Running command python setup.py egg_info 2023-07-06T21:03:42,985 running egg_info 2023-07-06T21:03:42,989 creating /tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info 2023-07-06T21:03:43,054 writing /tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info/PKG-INFO 2023-07-06T21:03:43,060 writing dependency_links to /tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info/dependency_links.txt 2023-07-06T21:03:43,065 writing entry points to /tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info/entry_points.txt 2023-07-06T21:03:43,068 writing requirements to /tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info/requires.txt 2023-07-06T21:03:43,070 writing top-level names to /tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info/top_level.txt 2023-07-06T21:03:43,073 writing manifest file '/tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info/SOURCES.txt' 2023-07-06T21:03:43,223 reading manifest file '/tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info/SOURCES.txt' 2023-07-06T21:03:43,227 reading manifest template 'MANIFEST.in' 2023-07-06T21:03:43,358 warning: no files found matching '*.jpg' under directory 'docs' 2023-07-06T21:03:43,412 warning: no files found matching '*.gif' under directory 'docs' 2023-07-06T21:03:43,414 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-07-06T21:03:43,416 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-07-06T21:03:43,417 adding license file 'LICENSE' 2023-07-06T21:03:43,417 adding license file 'AUTHORS.rst' 2023-07-06T21:03:43,432 writing manifest file '/tmp/pip-pip-egg-info-cuvgpruy/read_structure_step.egg-info/SOURCES.txt' 2023-07-06T21:03:43,556 Preparing metadata (setup.py): finished with status 'done' 2023-07-06T21:03:43,570 Source in /tmp/pip-wheel-axp1ouf0/read-structure-step_3ace43070e6d449eba6ffb7c5e620cbf has version 2023.7.6, which satisfies requirement read-structure-step==2023.7.6 from https://files.pythonhosted.org/packages/c9/dc/da4dcf0dbf84ebcfb7d7f48a22e5632ea8d1d930ffc891c1ccc099f3cf7a/read_structure_step-2023.7.6.tar.gz 2023-07-06T21:03:43,572 Removed read-structure-step==2023.7.6 from https://files.pythonhosted.org/packages/c9/dc/da4dcf0dbf84ebcfb7d7f48a22e5632ea8d1d930ffc891c1ccc099f3cf7a/read_structure_step-2023.7.6.tar.gz from build tracker '/tmp/pip-build-tracker-si93jgtd' 2023-07-06T21:03:43,584 Created temporary directory: /tmp/pip-unpack-zs5gccby 2023-07-06T21:03:43,585 Building wheels for collected packages: read-structure-step 2023-07-06T21:03:43,594 Created temporary directory: /tmp/pip-wheel-_jp40rar 2023-07-06T21:03:43,595 Building wheel for read-structure-step (setup.py): started 2023-07-06T21:03:43,597 Destination directory: /tmp/pip-wheel-_jp40rar 2023-07-06T21:03:43,597 Running command python setup.py bdist_wheel 2023-07-06T21:03:45,346 running bdist_wheel 2023-07-06T21:03:46,055 running build 2023-07-06T21:03:46,056 running build_py 2023-07-06T21:03:46,069 creating build 2023-07-06T21:03:46,070 creating build/lib 2023-07-06T21:03:46,072 creating build/lib/tests 2023-07-06T21:03:46,074 copying tests/test_formats.py -> build/lib/tests 2023-07-06T21:03:46,079 copying tests/__init__.py -> build/lib/tests 2023-07-06T21:03:46,082 copying tests/test_read_structure_step.py -> build/lib/tests 2023-07-06T21:03:46,085 copying tests/build_filenames.py -> build/lib/tests 2023-07-06T21:03:46,088 copying tests/mopac_exists.py -> build/lib/tests 2023-07-06T21:03:46,092 copying tests/test_utils.py -> build/lib/tests 2023-07-06T21:03:46,098 creating build/lib/read_structure_step 2023-07-06T21:03:46,099 copying read_structure_step/_version.py -> build/lib/read_structure_step 2023-07-06T21:03:46,103 copying read_structure_step/write_structure_step.py -> build/lib/read_structure_step 2023-07-06T21:03:46,107 copying read_structure_step/errors.py -> build/lib/read_structure_step 2023-07-06T21:03:46,110 copying read_structure_step/read_structure.py -> build/lib/read_structure_step 2023-07-06T21:03:46,115 copying read_structure_step/read.py -> build/lib/read_structure_step 2023-07-06T21:03:46,119 copying read_structure_step/tk_write_structure.py -> build/lib/read_structure_step 2023-07-06T21:03:46,122 copying read_structure_step/__init__.py -> build/lib/read_structure_step 2023-07-06T21:03:46,126 copying read_structure_step/write.py -> build/lib/read_structure_step 2023-07-06T21:03:46,130 copying read_structure_step/read_structure_parameters.py -> build/lib/read_structure_step 2023-07-06T21:03:46,133 copying read_structure_step/write_structure.py -> build/lib/read_structure_step 2023-07-06T21:03:46,138 copying read_structure_step/tk_read_structure.py -> build/lib/read_structure_step 2023-07-06T21:03:46,142 copying read_structure_step/utils.py -> build/lib/read_structure_step 2023-07-06T21:03:46,146 copying read_structure_step/write_structure_parameters.py -> build/lib/read_structure_step 2023-07-06T21:03:46,151 copying read_structure_step/read_structure_step.py -> build/lib/read_structure_step 2023-07-06T21:03:46,157 creating build/lib/read_structure_step/formats 2023-07-06T21:03:46,159 copying read_structure_step/formats/which.py -> build/lib/read_structure_step/formats 2023-07-06T21:03:46,163 copying read_structure_step/formats/__init__.py -> build/lib/read_structure_step/formats 2023-07-06T21:03:46,168 copying read_structure_step/formats/registries.py -> build/lib/read_structure_step/formats 2023-07-06T21:03:46,173 creating build/lib/read_structure_step/formats/sdf 2023-07-06T21:03:46,176 copying read_structure_step/formats/sdf/sdf.py -> build/lib/read_structure_step/formats/sdf 2023-07-06T21:03:46,181 copying read_structure_step/formats/sdf/__init__.py -> build/lib/read_structure_step/formats/sdf 2023-07-06T21:03:46,186 creating build/lib/read_structure_step/formats/mop 2023-07-06T21:03:46,189 copying read_structure_step/formats/mop/__init__.py -> build/lib/read_structure_step/formats/mop 2023-07-06T21:03:46,194 copying read_structure_step/formats/mop/obabel.py -> build/lib/read_structure_step/formats/mop 2023-07-06T21:03:46,199 copying read_structure_step/formats/mop/find_mopac.py -> build/lib/read_structure_step/formats/mop 2023-07-06T21:03:46,205 creating build/lib/read_structure_step/formats/mol2 2023-07-06T21:03:46,207 copying read_structure_step/formats/mol2/__init__.py -> build/lib/read_structure_step/formats/mol2 2023-07-06T21:03:46,211 copying read_structure_step/formats/mol2/mol2.py -> build/lib/read_structure_step/formats/mol2 2023-07-06T21:03:46,218 creating build/lib/read_structure_step/formats/xyz 2023-07-06T21:03:46,220 copying read_structure_step/formats/xyz/__init__.py -> build/lib/read_structure_step/formats/xyz 2023-07-06T21:03:46,225 copying read_structure_step/formats/xyz/xyz.py -> build/lib/read_structure_step/formats/xyz 2023-07-06T21:03:46,231 creating build/lib/read_structure_step/formats/cif 2023-07-06T21:03:46,233 copying read_structure_step/formats/cif/__init__.py -> build/lib/read_structure_step/formats/cif 2023-07-06T21:03:46,238 copying read_structure_step/formats/cif/mmcif.py -> build/lib/read_structure_step/formats/cif 2023-07-06T21:03:46,243 copying read_structure_step/formats/cif/cif.py -> build/lib/read_structure_step/formats/cif 2023-07-06T21:03:46,249 creating build/lib/read_structure_step/formats/openbabel_io 2023-07-06T21:03:46,250 copying read_structure_step/formats/openbabel_io/__init__.py -> build/lib/read_structure_step/formats/openbabel_io 2023-07-06T21:03:46,254 copying read_structure_step/formats/openbabel_io/obabel.py -> build/lib/read_structure_step/formats/openbabel_io 2023-07-06T21:03:46,258 copying read_structure_step/formats/openbabel_io/checkers.py -> build/lib/read_structure_step/formats/openbabel_io 2023-07-06T21:03:46,263 creating build/lib/read_structure_step/formats/smi 2023-07-06T21:03:46,265 copying read_structure_step/formats/smi/__init__.py -> build/lib/read_structure_step/formats/smi 2023-07-06T21:03:46,268 copying read_structure_step/formats/smi/smi.py -> build/lib/read_structure_step/formats/smi 2023-07-06T21:03:46,272 running egg_info 2023-07-06T21:03:46,413 writing read_structure_step.egg-info/PKG-INFO 2023-07-06T21:03:46,418 writing dependency_links to read_structure_step.egg-info/dependency_links.txt 2023-07-06T21:03:46,423 writing entry points to read_structure_step.egg-info/entry_points.txt 2023-07-06T21:03:46,427 writing requirements to read_structure_step.egg-info/requires.txt 2023-07-06T21:03:46,430 writing top-level names to read_structure_step.egg-info/top_level.txt 2023-07-06T21:03:46,514 reading manifest file 'read_structure_step.egg-info/SOURCES.txt' 2023-07-06T21:03:46,537 reading manifest template 'MANIFEST.in' 2023-07-06T21:03:46,661 warning: no files found matching '*.jpg' under directory 'docs' 2023-07-06T21:03:46,713 warning: no files found matching '*.gif' under directory 'docs' 2023-07-06T21:03:46,716 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-07-06T21:03:46,719 warning: no previously-included files matching '*.py[co]' found under directory '*' 2023-07-06T21:03:46,720 adding license file 'LICENSE' 2023-07-06T21:03:46,721 adding license file 'AUTHORS.rst' 2023-07-06T21:03:46,739 writing manifest file 'read_structure_step.egg-info/SOURCES.txt' 2023-07-06T21:03:46,749 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'read_structure_step.data' is absent from the `packages` configuration. 2023-07-06T21:03:46,749 !! 2023-07-06T21:03:46,750 ******************************************************************************** 2023-07-06T21:03:46,750 ############################ 2023-07-06T21:03:46,750 # Package would be ignored # 2023-07-06T21:03:46,751 ############################ 2023-07-06T21:03:46,751 Python recognizes 'read_structure_step.data' as an importable package[^1], 2023-07-06T21:03:46,751 but it is absent from setuptools' `packages` configuration. 2023-07-06T21:03:46,752 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T21:03:46,752 package, please make sure that 'read_structure_step.data' is explicitly added 2023-07-06T21:03:46,752 to the `packages` configuration field. 2023-07-06T21:03:46,753 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T21:03:46,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T21:03:46,753 instead of `find_packages(...)`/`find:`). 2023-07-06T21:03:46,754 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T21:03:46,755 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T21:03:46,755 If you don't want 'read_structure_step.data' to be distributed and are 2023-07-06T21:03:46,756 already explicitly excluding 'read_structure_step.data' via 2023-07-06T21:03:46,757 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T21:03:46,757 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T21:03:46,757 combination with a more fine grained `package-data` configuration. 2023-07-06T21:03:46,758 You can read more about "package data files" on setuptools documentation page: 2023-07-06T21:03:46,759 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T21:03:46,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T21:03:46,760 even if it does not contain any `.py` files. 2023-07-06T21:03:46,760 On the other hand, currently there is no concept of package data 2023-07-06T21:03:46,760 directory, all directories are treated like packages. 2023-07-06T21:03:46,761 ******************************************************************************** 2023-07-06T21:03:46,761 !! 2023-07-06T21:03:46,762 check.warn(importable) 2023-07-06T21:03:46,762 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'tests.data' is absent from the `packages` configuration. 2023-07-06T21:03:46,762 !! 2023-07-06T21:03:46,763 ******************************************************************************** 2023-07-06T21:03:46,763 ############################ 2023-07-06T21:03:46,763 # Package would be ignored # 2023-07-06T21:03:46,764 ############################ 2023-07-06T21:03:46,764 Python recognizes 'tests.data' as an importable package[^1], 2023-07-06T21:03:46,764 but it is absent from setuptools' `packages` configuration. 2023-07-06T21:03:46,765 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-06T21:03:46,765 package, please make sure that 'tests.data' is explicitly added 2023-07-06T21:03:46,765 to the `packages` configuration field. 2023-07-06T21:03:46,766 Alternatively, you can also rely on setuptools' discovery methods 2023-07-06T21:03:46,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-06T21:03:46,767 instead of `find_packages(...)`/`find:`). 2023-07-06T21:03:46,767 You can read more about "package discovery" on setuptools documentation page: 2023-07-06T21:03:46,768 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-06T21:03:46,769 If you don't want 'tests.data' to be distributed and are 2023-07-06T21:03:46,769 already explicitly excluding 'tests.data' via 2023-07-06T21:03:46,769 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-06T21:03:46,770 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-06T21:03:46,770 combination with a more fine grained `package-data` configuration. 2023-07-06T21:03:46,771 You can read more about "package data files" on setuptools documentation page: 2023-07-06T21:03:46,771 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-06T21:03:46,772 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-06T21:03:46,773 even if it does not contain any `.py` files. 2023-07-06T21:03:46,773 On the other hand, currently there is no concept of package data 2023-07-06T21:03:46,773 directory, all directories are treated like packages. 2023-07-06T21:03:46,773 ******************************************************************************** 2023-07-06T21:03:46,774 !! 2023-07-06T21:03:46,774 check.warn(importable) 2023-07-06T21:03:46,775 copying tests/methylidyne.mop -> build/lib/tests 2023-07-06T21:03:46,775 creating build/lib/tests/data 2023-07-06T21:03:46,776 copying tests/data/3TR_model.json -> build/lib/tests/data 2023-07-06T21:03:46,777 copying tests/data/3TR_model.mol2 -> build/lib/tests/data 2023-07-06T21:03:46,781 copying tests/data/3TR_model.pdb -> build/lib/tests/data 2023-07-06T21:03:46,785 copying tests/data/3TR_model.sdf -> build/lib/tests/data 2023-07-06T21:03:46,789 copying tests/data/3TR_model.xyz -> build/lib/tests/data 2023-07-06T21:03:46,794 copying tests/data/3TR_model_MN.xyz -> build/lib/tests/data 2023-07-06T21:03:46,798 copying tests/data/Cr_ACETCR.mop -> build/lib/tests/data 2023-07-06T21:03:46,802 copying tests/data/Cu(II)4Br10(2-) (CIVNAW10).mop -> build/lib/tests/data 2023-07-06T21:03:46,806 copying tests/data/RM1 63 Europium, CCDC entry LAPJAN.mop -> build/lib/tests/data 2023-07-06T21:03:46,812 copying tests/data/acetonitrile.mop -> build/lib/tests/data 2023-07-06T21:03:46,816 copying tests/data/lithium fluoride, trimer.mop -> build/lib/tests/data 2023-07-06T21:03:46,820 copying tests/data/methylidyne.mop -> build/lib/tests/data 2023-07-06T21:03:46,824 copying tests/data/potassium fluoride, dimer.mop -> build/lib/tests/data 2023-07-06T21:03:46,828 copying tests/data/spc -> build/lib/tests/data 2023-07-06T21:03:46,832 copying tests/data/spc.xyz -> build/lib/tests/data 2023-07-06T21:03:46,836 creating build/lib/read_structure_step/data 2023-07-06T21:03:46,838 copying read_structure_step/data/references.bib -> build/lib/read_structure_step/data 2023-07-06T21:03:46,854 UPDATING build/lib/read_structure_step/_version.py 2023-07-06T21:03:46,857 set build/lib/read_structure_step/_version.py to '2023.7.6' 2023-07-06T21:03:46,933 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-06T21:03:46,934 !! 2023-07-06T21:03:46,934 ******************************************************************************** 2023-07-06T21:03:46,935 Please avoid running ``setup.py`` directly. 2023-07-06T21:03:46,935 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-06T21:03:46,935 other standards-based tools. 2023-07-06T21:03:46,936 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-06T21:03:46,937 ******************************************************************************** 2023-07-06T21:03:46,937 !! 2023-07-06T21:03:46,937 self.initialize_options() 2023-07-06T21:03:47,003 installing to build/bdist.linux-armv7l/wheel 2023-07-06T21:03:47,003 running install 2023-07-06T21:03:47,064 running install_lib 2023-07-06T21:03:47,133 creating build/bdist.linux-armv7l 2023-07-06T21:03:47,134 creating build/bdist.linux-armv7l/wheel 2023-07-06T21:03:47,137 creating build/bdist.linux-armv7l/wheel/tests 2023-07-06T21:03:47,139 copying build/lib/tests/test_formats.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-06T21:03:47,144 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-06T21:03:47,148 copying build/lib/tests/test_read_structure_step.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-06T21:03:47,152 copying build/lib/tests/build_filenames.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-06T21:03:47,157 creating build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,158 copying build/lib/tests/data/3TR_model.mol2 -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,162 copying build/lib/tests/data/3TR_model.pdb -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,166 copying build/lib/tests/data/3TR_model.sdf -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,169 copying build/lib/tests/data/Cr_ACETCR.mop -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,173 copying build/lib/tests/data/3TR_model.json -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,177 copying build/lib/tests/data/spc -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,180 copying build/lib/tests/data/potassium fluoride, dimer.mop -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,184 copying build/lib/tests/data/spc.xyz -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,187 copying build/lib/tests/data/3TR_model_MN.xyz -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,191 copying build/lib/tests/data/Cu(II)4Br10(2-) (CIVNAW10).mop -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,195 copying build/lib/tests/data/RM1 63 Europium, CCDC entry LAPJAN.mop -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,199 copying build/lib/tests/data/lithium fluoride, trimer.mop -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,202 copying build/lib/tests/data/acetonitrile.mop -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,206 copying build/lib/tests/data/3TR_model.xyz -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,209 copying build/lib/tests/data/methylidyne.mop -> build/bdist.linux-armv7l/wheel/tests/data 2023-07-06T21:03:47,213 copying build/lib/tests/mopac_exists.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-06T21:03:47,217 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2023-07-06T21:03:47,220 copying build/lib/tests/methylidyne.mop -> build/bdist.linux-armv7l/wheel/tests 2023-07-06T21:03:47,225 creating build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,227 copying build/lib/read_structure_step/_version.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,231 copying build/lib/read_structure_step/write_structure_step.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,234 copying build/lib/read_structure_step/errors.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,238 copying build/lib/read_structure_step/read_structure.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,242 copying build/lib/read_structure_step/read.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,246 copying build/lib/read_structure_step/tk_write_structure.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,250 copying build/lib/read_structure_step/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,254 copying build/lib/read_structure_step/write.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,260 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats 2023-07-06T21:03:47,262 copying build/lib/read_structure_step/formats/which.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats 2023-07-06T21:03:47,268 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/sdf 2023-07-06T21:03:47,270 copying build/lib/read_structure_step/formats/sdf/sdf.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/sdf 2023-07-06T21:03:47,275 copying build/lib/read_structure_step/formats/sdf/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/sdf 2023-07-06T21:03:47,281 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/mop 2023-07-06T21:03:47,283 copying build/lib/read_structure_step/formats/mop/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/mop 2023-07-06T21:03:47,287 copying build/lib/read_structure_step/formats/mop/obabel.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/mop 2023-07-06T21:03:47,292 copying build/lib/read_structure_step/formats/mop/find_mopac.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/mop 2023-07-06T21:03:47,296 copying build/lib/read_structure_step/formats/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats 2023-07-06T21:03:47,301 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/mol2 2023-07-06T21:03:47,302 copying build/lib/read_structure_step/formats/mol2/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/mol2 2023-07-06T21:03:47,306 copying build/lib/read_structure_step/formats/mol2/mol2.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/mol2 2023-07-06T21:03:47,312 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/xyz 2023-07-06T21:03:47,313 copying build/lib/read_structure_step/formats/xyz/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/xyz 2023-07-06T21:03:47,317 copying build/lib/read_structure_step/formats/xyz/xyz.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/xyz 2023-07-06T21:03:47,323 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/cif 2023-07-06T21:03:47,324 copying build/lib/read_structure_step/formats/cif/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/cif 2023-07-06T21:03:47,328 copying build/lib/read_structure_step/formats/cif/mmcif.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/cif 2023-07-06T21:03:47,332 copying build/lib/read_structure_step/formats/cif/cif.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/cif 2023-07-06T21:03:47,337 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/openbabel_io 2023-07-06T21:03:47,339 copying build/lib/read_structure_step/formats/openbabel_io/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/openbabel_io 2023-07-06T21:03:47,343 copying build/lib/read_structure_step/formats/openbabel_io/obabel.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/openbabel_io 2023-07-06T21:03:47,347 copying build/lib/read_structure_step/formats/openbabel_io/checkers.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/openbabel_io 2023-07-06T21:03:47,351 creating build/bdist.linux-armv7l/wheel/read_structure_step/formats/smi 2023-07-06T21:03:47,353 copying build/lib/read_structure_step/formats/smi/__init__.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/smi 2023-07-06T21:03:47,357 copying build/lib/read_structure_step/formats/smi/smi.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats/smi 2023-07-06T21:03:47,361 copying build/lib/read_structure_step/formats/registries.py -> build/bdist.linux-armv7l/wheel/read_structure_step/formats 2023-07-06T21:03:47,365 copying build/lib/read_structure_step/read_structure_parameters.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,369 creating build/bdist.linux-armv7l/wheel/read_structure_step/data 2023-07-06T21:03:47,371 copying build/lib/read_structure_step/data/references.bib -> build/bdist.linux-armv7l/wheel/read_structure_step/data 2023-07-06T21:03:47,375 copying build/lib/read_structure_step/write_structure.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,379 copying build/lib/read_structure_step/tk_read_structure.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,383 copying build/lib/read_structure_step/utils.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,387 copying build/lib/read_structure_step/write_structure_parameters.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,391 copying build/lib/read_structure_step/read_structure_step.py -> build/bdist.linux-armv7l/wheel/read_structure_step 2023-07-06T21:03:47,394 running install_egg_info 2023-07-06T21:03:47,475 Copying read_structure_step.egg-info to build/bdist.linux-armv7l/wheel/read_structure_step-2023.7.6-py3.7.egg-info 2023-07-06T21:03:47,503 running install_scripts 2023-07-06T21:03:47,545 creating build/bdist.linux-armv7l/wheel/read_structure_step-2023.7.6.dist-info/WHEEL 2023-07-06T21:03:47,551 creating '/tmp/pip-wheel-_jp40rar/read_structure_step-2023.7.6-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-06T21:03:47,556 adding 'read_structure_step/__init__.py' 2023-07-06T21:03:47,559 adding 'read_structure_step/_version.py' 2023-07-06T21:03:47,561 adding 'read_structure_step/errors.py' 2023-07-06T21:03:47,564 adding 'read_structure_step/read.py' 2023-07-06T21:03:47,569 adding 'read_structure_step/read_structure.py' 2023-07-06T21:03:47,573 adding 'read_structure_step/read_structure_parameters.py' 2023-07-06T21:03:47,575 adding 'read_structure_step/read_structure_step.py' 2023-07-06T21:03:47,579 adding 'read_structure_step/tk_read_structure.py' 2023-07-06T21:03:47,582 adding 'read_structure_step/tk_write_structure.py' 2023-07-06T21:03:47,585 adding 'read_structure_step/utils.py' 2023-07-06T21:03:47,588 adding 'read_structure_step/write.py' 2023-07-06T21:03:47,591 adding 'read_structure_step/write_structure.py' 2023-07-06T21:03:47,595 adding 'read_structure_step/write_structure_parameters.py' 2023-07-06T21:03:47,598 adding 'read_structure_step/write_structure_step.py' 2023-07-06T21:03:47,602 adding 'read_structure_step/data/references.bib' 2023-07-06T21:03:47,606 adding 'read_structure_step/formats/__init__.py' 2023-07-06T21:03:47,609 adding 'read_structure_step/formats/registries.py' 2023-07-06T21:03:47,611 adding 'read_structure_step/formats/which.py' 2023-07-06T21:03:47,615 adding 'read_structure_step/formats/cif/__init__.py' 2023-07-06T21:03:47,618 adding 'read_structure_step/formats/cif/cif.py' 2023-07-06T21:03:47,622 adding 'read_structure_step/formats/cif/mmcif.py' 2023-07-06T21:03:47,625 adding 'read_structure_step/formats/mol2/__init__.py' 2023-07-06T21:03:47,630 adding 'read_structure_step/formats/mol2/mol2.py' 2023-07-06T21:03:47,634 adding 'read_structure_step/formats/mop/__init__.py' 2023-07-06T21:03:47,637 adding 'read_structure_step/formats/mop/find_mopac.py' 2023-07-06T21:03:47,644 adding 'read_structure_step/formats/mop/obabel.py' 2023-07-06T21:03:47,648 adding 'read_structure_step/formats/openbabel_io/__init__.py' 2023-07-06T21:03:47,650 adding 'read_structure_step/formats/openbabel_io/checkers.py' 2023-07-06T21:03:47,654 adding 'read_structure_step/formats/openbabel_io/obabel.py' 2023-07-06T21:03:47,658 adding 'read_structure_step/formats/sdf/__init__.py' 2023-07-06T21:03:47,662 adding 'read_structure_step/formats/sdf/sdf.py' 2023-07-06T21:03:47,667 adding 'read_structure_step/formats/smi/__init__.py' 2023-07-06T21:03:47,671 adding 'read_structure_step/formats/smi/smi.py' 2023-07-06T21:03:47,675 adding 'read_structure_step/formats/xyz/__init__.py' 2023-07-06T21:03:47,679 adding 'read_structure_step/formats/xyz/xyz.py' 2023-07-06T21:03:47,687 adding 'tests/__init__.py' 2023-07-06T21:03:47,689 adding 'tests/build_filenames.py' 2023-07-06T21:03:47,691 adding 'tests/methylidyne.mop' 2023-07-06T21:03:47,694 adding 'tests/mopac_exists.py' 2023-07-06T21:03:47,697 adding 'tests/test_formats.py' 2023-07-06T21:03:47,700 adding 'tests/test_read_structure_step.py' 2023-07-06T21:03:47,703 adding 'tests/test_utils.py' 2023-07-06T21:03:47,706 adding 'tests/data/3TR_model.json' 2023-07-06T21:03:47,709 adding 'tests/data/3TR_model.mol2' 2023-07-06T21:03:47,712 adding 'tests/data/3TR_model.pdb' 2023-07-06T21:03:47,714 adding 'tests/data/3TR_model.sdf' 2023-07-06T21:03:47,716 adding 'tests/data/3TR_model.xyz' 2023-07-06T21:03:47,719 adding 'tests/data/3TR_model_MN.xyz' 2023-07-06T21:03:47,722 adding 'tests/data/Cr_ACETCR.mop' 2023-07-06T21:03:47,724 adding 'tests/data/Cu(II)4Br10(2-) (CIVNAW10).mop' 2023-07-06T21:03:47,728 adding 'tests/data/RM1 63 Europium, CCDC entry LAPJAN.mop' 2023-07-06T21:03:47,731 adding 'tests/data/acetonitrile.mop' 2023-07-06T21:03:47,733 adding 'tests/data/lithium fluoride, trimer.mop' 2023-07-06T21:03:47,735 adding 'tests/data/methylidyne.mop' 2023-07-06T21:03:47,738 adding 'tests/data/potassium fluoride, dimer.mop' 2023-07-06T21:03:47,740 adding 'tests/data/spc' 2023-07-06T21:03:47,742 adding 'tests/data/spc.xyz' 2023-07-06T21:03:47,744 adding 'read_structure_step-2023.7.6.dist-info/AUTHORS.rst' 2023-07-06T21:03:47,747 adding 'read_structure_step-2023.7.6.dist-info/LICENSE' 2023-07-06T21:03:47,750 adding 'read_structure_step-2023.7.6.dist-info/METADATA' 2023-07-06T21:03:47,752 adding 'read_structure_step-2023.7.6.dist-info/WHEEL' 2023-07-06T21:03:47,754 adding 'read_structure_step-2023.7.6.dist-info/entry_points.txt' 2023-07-06T21:03:47,756 adding 'read_structure_step-2023.7.6.dist-info/top_level.txt' 2023-07-06T21:03:47,757 adding 'read_structure_step-2023.7.6.dist-info/zip-safe' 2023-07-06T21:03:47,761 adding 'read_structure_step-2023.7.6.dist-info/RECORD' 2023-07-06T21:03:47,767 removing build/bdist.linux-armv7l/wheel 2023-07-06T21:03:47,961 Building wheel for read-structure-step (setup.py): finished with status 'done' 2023-07-06T21:03:47,970 Created wheel for read-structure-step: filename=read_structure_step-2023.7.6-py2.py3-none-any.whl size=72659 sha256=4753324ed3467f5487258d78ee5337fb5db6816bf97b63a484c4ff9a3b526802 2023-07-06T21:03:47,972 Stored in directory: /tmp/pip-ephem-wheel-cache-02mt7il5/wheels/1d/a1/81/2a4a57dc79790d407047cfb97f57a9ba28bf4766ac31a0acac 2023-07-06T21:03:48,005 Successfully built read-structure-step 2023-07-06T21:03:48,017 Removed build tracker: '/tmp/pip-build-tracker-si93jgtd'