2023-07-07T09:01:50,552 Created temporary directory: /tmp/pip-build-tracker-5wjn_rwr 2023-07-07T09:01:50,553 Initialized build tracking at /tmp/pip-build-tracker-5wjn_rwr 2023-07-07T09:01:50,553 Created build tracker: /tmp/pip-build-tracker-5wjn_rwr 2023-07-07T09:01:50,553 Entered build tracker: /tmp/pip-build-tracker-5wjn_rwr 2023-07-07T09:01:50,554 Created temporary directory: /tmp/pip-wheel-12s410cc 2023-07-07T09:01:50,557 Created temporary directory: /tmp/pip-ephem-wheel-cache-zsamg91g 2023-07-07T09:01:50,581 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-07T09:01:50,584 2 location(s) to search for versions of funid: 2023-07-07T09:01:50,584 * https://pypi.org/simple/funid/ 2023-07-07T09:01:50,584 * https://www.piwheels.org/simple/funid/ 2023-07-07T09:01:50,585 Fetching project page and analyzing links: https://pypi.org/simple/funid/ 2023-07-07T09:01:50,585 Getting page https://pypi.org/simple/funid/ 2023-07-07T09:01:50,587 Found index url https://pypi.org/simple/ 2023-07-07T09:01:50,638 Fetched page https://pypi.org/simple/funid/ as application/vnd.pypi.simple.v1+json 2023-07-07T09:01:50,645 Found link https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.0 2023-07-07T09:01:50,645 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/6a/08/2bccf4d17d6297e5c52bcba4eda5d5a1ed634eeb4c048a6a0492bf26f0e2/FunID-0.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,646 Found link https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.2 2023-07-07T09:01:50,646 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/77/47/e4d4394d3df8130a967d730b209ee08f0563e8c07d358e0938084ea2c238/FunID-0.3.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,647 Found link https://files.pythonhosted.org/packages/17/c7/bcd0e755fa5647dda4672ae9fd88f94d590c796d5312b2839b1e00beea1b/FunID-0.3.2.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.2.1 2023-07-07T09:01:50,647 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/20/65/dd3f11ff95c939d1894a81682d820f36a991bcf8f100b19982da1b3787ba/FunID-0.3.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,648 Found link https://files.pythonhosted.org/packages/48/62/211e51aabf536101577540574d126849837a43fa07e8c7c79ec79378bf30/FunID-0.3.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.0 2023-07-07T09:01:50,648 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/31/96/b453dc34699170a20a00aa02e9a0eeb511d75494b88bef72641a7f4aabe1/FunID-0.3.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,649 Found link https://files.pythonhosted.org/packages/00/60/4a6fee9144f0fd461c9e04e3f27ac9bbe36c2b7e9b04ddb9159a2e83481d/FunID-0.3.3.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.1 2023-07-07T09:01:50,649 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/27/55/5e0509c9b25f2d457da174c47bc4b191e7703d59ce32882ce03496ee35a7/FunID-0.3.4-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,650 Found link https://files.pythonhosted.org/packages/6d/2c/1a624a74aadc70a913197e0a7720007b2f952668ca497fdeeb9737699d8f/FunID-0.3.4.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.4 2023-07-07T09:01:50,650 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/5b/e0/d8b28a15adbb933eea238e2b955d474c3fb6aa73c904d6b372f56f30474c/FunID-0.3.5-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,651 Found link https://files.pythonhosted.org/packages/4e/f7/ff0895811673a7bd1da49a359d093810346659be5ac54140b2fbb5e199fc/FunID-0.3.5.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.5 2023-07-07T09:01:50,651 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/b7/27/c64985b174cbfa662e2109d838292a69d1669ad6a3a36294ee03ce81ef2a/FunID-0.3.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,652 Found link https://files.pythonhosted.org/packages/7c/19/cc41c29a0bc630bdc8a5ff93bb58cacc1ae756280b353b6b78d39c52bc85/FunID-0.3.6.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.6.1 2023-07-07T09:01:50,652 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/1f/44/739693947517bbc2e128df01ee142d72ee3358f7cc7daba4a3759fbf34bd/FunID-0.3.7-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,653 Found link https://files.pythonhosted.org/packages/a2/14/7ae571dd6e4b918e2a85ca1625481c5764c15f2f4ecebb64e738e4863c57/FunID-0.3.7.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.7 2023-07-07T09:01:50,653 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/89/e3/e48669d0fdeafd9b79bcd3b601ed05547df828c6f5a3cd0d733e28289738/FunID-0.3.8-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,653 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/f4/45/d1bc4761848b0f4ece4dc47311a91a7e85668eb49b3bbc86843e4508dbc1/FunID-0.3.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,654 Found link https://files.pythonhosted.org/packages/42/29/96fc938318a3c5b62670cb0efc021fea7f8257e825f9bc62aad02087bde5/FunID-0.3.8.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.8.1 2023-07-07T09:01:50,654 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/f9/05/5a5739948741051441923681ab8f41aeb24b4b67aee087e3911831cd397a/FunID-0.3.8.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,654 Found link https://files.pythonhosted.org/packages/4a/4a/3bf498c2707726c16177fb6d5e4c1fb6b942aa0f857378f22345cee709b9/FunID-0.3.8.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.8.2 2023-07-07T09:01:50,655 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/51/ac/f8561c5c3715309d959188f62cef662154c247362fa548893dda38582f08/FunID-0.3.9-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,655 Found link https://files.pythonhosted.org/packages/de/4c/ef736f335f2da1f2acbe16932bac1a03e2a46f7fd26e01f7d4a5b30d1a35/FunID-0.3.9.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.9 2023-07-07T09:01:50,655 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/26/59/dd98aa71ec91f80ff255b9177e7c3705f2352298dc8bb48bfa492d8304e3/FunID-0.3.10.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,656 Found link https://files.pythonhosted.org/packages/da/ef/a3b426feaf718c30c259c165124120c3192833b4c356a8a10efa909ac4b7/FunID-0.3.10.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.10.1 2023-07-07T09:01:50,656 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/17/b5/c3439f3af84951ffe85ed70190fdc02a33ab0e435a934a02c08f49505642/FunID-0.3.11-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,657 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/82/95/47d34ff9a0cc4a13e411dda8b40535efd54149fd259ef126246e6fd7ecdb/FunID-0.3.11.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,657 Found link https://files.pythonhosted.org/packages/84/c2/3278912b3d3b883be4b40dc072f732f708d5eb844046486762c6f9e7c772/FunID-0.3.11.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.11.0 2023-07-07T09:01:50,657 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/43/8c/a5bf3a512cb66117b0b8a83837a966dc2e3ce2c2bcb8570e5a35d3400392/FunID-0.3.11.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,658 Found link https://files.pythonhosted.org/packages/ba/8a/83e56e593445f58c6b6137886a90beaedabcc59274a95ff56e9d1fd8ecdb/FunID-0.3.11.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.11.1 2023-07-07T09:01:50,658 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/4c/68/28671e34d2c6358178f26a824fd61e89dfea1c3582366a9a5d27cfad6eef/FunID-0.3.12-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,659 Found link https://files.pythonhosted.org/packages/98/5a/615914c19c41ddb727d869f81f69307ee01450ebb57ae2316d7b467cdf28/FunID-0.3.12.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.12 2023-07-07T09:01:50,659 Fetching project page and analyzing links: https://www.piwheels.org/simple/funid/ 2023-07-07T09:01:50,660 Getting page https://www.piwheels.org/simple/funid/ 2023-07-07T09:01:50,661 Found index url https://www.piwheels.org/simple/ 2023-07-07T09:01:50,841 Fetched page https://www.piwheels.org/simple/funid/ as text/html 2023-07-07T09:01:50,846 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.11.1-py3-none-any.whl#sha256=0b9e179e7311ba0893697757fa065752cf5b0629ba6f3f38e1025e335e74b3a8 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,846 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.11.0-py3-none-any.whl#sha256=6e60d72632ca2cf07c0ec2c903a5e044eef646e76848189b805d20736850ce33 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,847 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.10.1-py3-none-any.whl#sha256=7ac9e1373fc681d838576b55f51c104675d6fc3134a2d545da50145e18d08705 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,847 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.9-py3-none-any.whl#sha256=4431b10bd1c85b826c3ec29a0d6012ea6c189c62b3b9a78ca40cb341e5aba58a (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,847 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.8.2-py3-none-any.whl#sha256=06eb041030a5d98c5317f93863fa0bafdb3bac2e3225487b61109016d3ae8b89 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,847 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.8.1-py3-none-any.whl#sha256=e084fdf424ae421530d153e56c4a7a15849d59762617b101ba672265e1f83ae2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,847 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.7-py3-none-any.whl#sha256=696cfcf7f361ec4e0dd269ac3c0b30051c83fb75dd92ee7b8b0813f1b6c71f6c (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,848 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.6.1-py3-none-any.whl#sha256=9eddeab3cb03eb693bd4e1e231ab1076caa820fd6db88ef6c584b309cf87af4b (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,848 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.5-py3-none-any.whl#sha256=010daca223b2f36ea9811ebd48eb1afa57c9a0ac2f3a3f84f9b86603107db381 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,848 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.4-py3-none-any.whl#sha256=8f1161bfcbdbb5037a33076aa43c07292865101ee07e5370547b462c0e20cb67 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,848 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.1-py3-none-any.whl#sha256=3f87f5ecaa7ed8c6c00a3d76dc520e16293e70f38d878a85136fe28b96dcbbc5 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,848 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.0-py3-none-any.whl#sha256=dbca8d35c471b5a3c78fa7f5310bc475466d4bdc67ffff084e63baaf20a81154 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,849 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2.1-py3-none-any.whl#sha256=273f7078ce3ee94e0c5f6e862a8419c6ea6bd05ea1153174fba3ac5259d65f3a (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-07T09:01:50,849 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2-py3-none-any.whl#sha256=d0714cd7cd6b2c16ae6dc7120ae5ede922e049fab52e6d1a2a24c6e7075360be (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,849 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.0-py3-none-any.whl#sha256=e875a0092c43c61afaa8f12b92c67d0ae13e5a081dc0f494828474f50c67bfd2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-07T09:01:50,849 Skipping link: not a file: https://www.piwheels.org/simple/funid/ 2023-07-07T09:01:50,849 Skipping link: not a file: https://pypi.org/simple/funid/ 2023-07-07T09:01:50,869 Given no hashes to check 1 links for project 'funid': discarding no candidates 2023-07-07T09:01:50,886 Collecting funid==0.3.12 2023-07-07T09:01:50,888 Created temporary directory: /tmp/pip-unpack-0w_a_42t 2023-07-07T09:01:51,179 Downloading FunID-0.3.12.tar.gz (51.4 MB) 2023-07-07T09:02:03,793 Added funid==0.3.12 from https://files.pythonhosted.org/packages/98/5a/615914c19c41ddb727d869f81f69307ee01450ebb57ae2316d7b467cdf28/FunID-0.3.12.tar.gz to build tracker '/tmp/pip-build-tracker-5wjn_rwr' 2023-07-07T09:02:03,796 Running setup.py (path:/tmp/pip-wheel-12s410cc/funid_f862119e68474c28954f79d9cadb125e/setup.py) egg_info for package funid 2023-07-07T09:02:03,797 Created temporary directory: /tmp/pip-pip-egg-info-o4qmlq6t 2023-07-07T09:02:03,797 Preparing metadata (setup.py): started 2023-07-07T09:02:03,798 Running command python setup.py egg_info 2023-07-07T09:02:04,424 {'name': 'FunID', 'version': '0.3.12', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.10', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'psutil', 'PyQt5', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'scipy', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-07-07T09:02:04,424 running egg_info 2023-07-07T09:02:04,425 creating /tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info 2023-07-07T09:02:04,452 writing /tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info/PKG-INFO 2023-07-07T09:02:04,454 writing dependency_links to /tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info/dependency_links.txt 2023-07-07T09:02:04,456 writing entry points to /tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info/entry_points.txt 2023-07-07T09:02:04,457 writing requirements to /tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info/requires.txt 2023-07-07T09:02:04,458 writing top-level names to /tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info/top_level.txt 2023-07-07T09:02:04,459 writing manifest file '/tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info/SOURCES.txt' 2023-07-07T09:02:04,549 reading manifest file '/tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info/SOURCES.txt' 2023-07-07T09:02:04,550 adding license file 'LICENSE' 2023-07-07T09:02:04,554 writing manifest file '/tmp/pip-pip-egg-info-o4qmlq6t/FunID.egg-info/SOURCES.txt' 2023-07-07T09:02:04,611 Preparing metadata (setup.py): finished with status 'done' 2023-07-07T09:02:04,617 Source in /tmp/pip-wheel-12s410cc/funid_f862119e68474c28954f79d9cadb125e has version 0.3.12, which satisfies requirement funid==0.3.12 from https://files.pythonhosted.org/packages/98/5a/615914c19c41ddb727d869f81f69307ee01450ebb57ae2316d7b467cdf28/FunID-0.3.12.tar.gz 2023-07-07T09:02:04,617 Removed funid==0.3.12 from https://files.pythonhosted.org/packages/98/5a/615914c19c41ddb727d869f81f69307ee01450ebb57ae2316d7b467cdf28/FunID-0.3.12.tar.gz from build tracker '/tmp/pip-build-tracker-5wjn_rwr' 2023-07-07T09:02:04,624 Created temporary directory: /tmp/pip-unpack-s753cfxp 2023-07-07T09:02:04,625 Building wheels for collected packages: funid 2023-07-07T09:02:04,628 Created temporary directory: /tmp/pip-wheel-vs9m8zks 2023-07-07T09:02:04,629 Building wheel for funid (setup.py): started 2023-07-07T09:02:04,629 Destination directory: /tmp/pip-wheel-vs9m8zks 2023-07-07T09:02:04,630 Running command python setup.py bdist_wheel 2023-07-07T09:02:05,046 {'name': 'FunID', 'version': '0.3.12', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.10', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'psutil', 'PyQt5', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'scipy', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-07-07T09:02:05,274 running bdist_wheel 2023-07-07T09:02:05,552 running build 2023-07-07T09:02:05,552 running build_py 2023-07-07T09:02:05,581 creating build 2023-07-07T09:02:05,581 creating build/lib 2023-07-07T09:02:05,582 creating build/lib/funid 2023-07-07T09:02:05,583 copying funid/FunID_GUI.py -> build/lib/funid 2023-07-07T09:02:05,586 copying funid/main.py -> build/lib/funid 2023-07-07T09:02:05,588 copying funid/__init__.py -> build/lib/funid 2023-07-07T09:02:05,591 creating build/lib/funid/src 2023-07-07T09:02:05,592 copying funid/src/tree_interpretation.py -> build/lib/funid/src 2023-07-07T09:02:05,595 copying funid/src/cluster.py -> build/lib/funid/src 2023-07-07T09:02:05,598 copying funid/src/search.py -> build/lib/funid/src 2023-07-07T09:02:05,600 copying funid/src/logger.py -> build/lib/funid/src 2023-07-07T09:02:05,602 copying funid/src/modeltest.py -> build/lib/funid/src 2023-07-07T09:02:05,604 copying funid/src/hasher.py -> build/lib/funid/src 2023-07-07T09:02:05,606 copying funid/src/save.py -> build/lib/funid/src 2023-07-07T09:02:05,609 copying funid/src/validate_option.py -> build/lib/funid/src 2023-07-07T09:02:05,612 copying funid/src/ncbi.py -> build/lib/funid/src 2023-07-07T09:02:05,614 copying funid/src/logics.py -> build/lib/funid/src 2023-07-07T09:02:05,616 copying funid/src/initialize.py -> build/lib/funid/src 2023-07-07T09:02:05,618 copying funid/src/patch.py -> build/lib/funid/src 2023-07-07T09:02:05,620 copying funid/src/command.py -> build/lib/funid/src 2023-07-07T09:02:05,623 copying funid/src/concatenate.py -> build/lib/funid/src 2023-07-07T09:02:05,625 copying funid/src/tree.py -> build/lib/funid/src 2023-07-07T09:02:05,627 copying funid/src/ext.py -> build/lib/funid/src 2023-07-07T09:02:05,629 copying funid/src/__init__.py -> build/lib/funid/src 2023-07-07T09:02:05,631 copying funid/src/tool.py -> build/lib/funid/src 2023-07-07T09:02:05,633 copying funid/src/tree_interpretation_pipe.py -> build/lib/funid/src 2023-07-07T09:02:05,636 copying funid/src/opt_generator.py -> build/lib/funid/src 2023-07-07T09:02:05,637 copying funid/src/align.py -> build/lib/funid/src 2023-07-07T09:02:05,639 copying funid/src/reporter.py -> build/lib/funid/src 2023-07-07T09:02:05,642 copying funid/src/validation.py -> build/lib/funid/src 2023-07-07T09:02:05,644 copying funid/src/trim.py -> build/lib/funid/src 2023-07-07T09:02:05,646 copying funid/src/manage_input.py -> build/lib/funid/src 2023-07-07T09:02:05,649 copying funid/src/dataset.py -> build/lib/funid/src 2023-07-07T09:02:05,652 creating build/lib/funid/data 2023-07-07T09:02:05,653 copying funid/data/__init__.py -> build/lib/funid/data 2023-07-07T09:02:05,655 running egg_info 2023-07-07T09:02:05,717 writing FunID.egg-info/PKG-INFO 2023-07-07T09:02:05,719 writing dependency_links to FunID.egg-info/dependency_links.txt 2023-07-07T09:02:05,721 writing entry points to FunID.egg-info/entry_points.txt 2023-07-07T09:02:05,722 writing requirements to FunID.egg-info/requires.txt 2023-07-07T09:02:05,724 writing top-level names to FunID.egg-info/top_level.txt 2023-07-07T09:02:05,760 reading manifest file 'FunID.egg-info/SOURCES.txt' 2023-07-07T09:02:05,769 adding license file 'LICENSE' 2023-07-07T09:02:05,776 writing manifest file 'FunID.egg-info/SOURCES.txt' 2023-07-07T09:02:05,779 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external' is absent from the `packages` configuration. 2023-07-07T09:02:05,780 !! 2023-07-07T09:02:05,780 ******************************************************************************** 2023-07-07T09:02:05,780 ############################ 2023-07-07T09:02:05,780 # Package would be ignored # 2023-07-07T09:02:05,780 ############################ 2023-07-07T09:02:05,780 Python recognizes 'funid.external' as an importable package[^1], 2023-07-07T09:02:05,781 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,781 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,781 package, please make sure that 'funid.external' is explicitly added 2023-07-07T09:02:05,781 to the `packages` configuration field. 2023-07-07T09:02:05,781 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,782 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,782 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,782 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,782 If you don't want 'funid.external' to be distributed and are 2023-07-07T09:02:05,782 already explicitly excluding 'funid.external' via 2023-07-07T09:02:05,782 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,783 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,783 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,783 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,784 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,784 even if it does not contain any `.py` files. 2023-07-07T09:02:05,784 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,784 directory, all directories are treated like packages. 2023-07-07T09:02:05,784 ******************************************************************************** 2023-07-07T09:02:05,784 !! 2023-07-07T09:02:05,784 check.warn(importable) 2023-07-07T09:02:05,785 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows' is absent from the `packages` configuration. 2023-07-07T09:02:05,785 !! 2023-07-07T09:02:05,785 ******************************************************************************** 2023-07-07T09:02:05,785 ############################ 2023-07-07T09:02:05,785 # Package would be ignored # 2023-07-07T09:02:05,785 ############################ 2023-07-07T09:02:05,785 Python recognizes 'funid.external.BLAST_Windows' as an importable package[^1], 2023-07-07T09:02:05,786 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,786 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,786 package, please make sure that 'funid.external.BLAST_Windows' is explicitly added 2023-07-07T09:02:05,786 to the `packages` configuration field. 2023-07-07T09:02:05,786 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,786 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,786 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,787 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,787 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,787 If you don't want 'funid.external.BLAST_Windows' to be distributed and are 2023-07-07T09:02:05,787 already explicitly excluding 'funid.external.BLAST_Windows' via 2023-07-07T09:02:05,787 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,787 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,788 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,788 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,788 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,788 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,788 even if it does not contain any `.py` files. 2023-07-07T09:02:05,789 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,789 directory, all directories are treated like packages. 2023-07-07T09:02:05,789 ******************************************************************************** 2023-07-07T09:02:05,789 !! 2023-07-07T09:02:05,789 check.warn(importable) 2023-07-07T09:02:05,789 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2023-07-07T09:02:05,789 !! 2023-07-07T09:02:05,790 ******************************************************************************** 2023-07-07T09:02:05,790 ############################ 2023-07-07T09:02:05,790 # Package would be ignored # 2023-07-07T09:02:05,790 ############################ 2023-07-07T09:02:05,790 Python recognizes 'funid.external.BLAST_Windows.bin' as an importable package[^1], 2023-07-07T09:02:05,790 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,790 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,790 package, please make sure that 'funid.external.BLAST_Windows.bin' is explicitly added 2023-07-07T09:02:05,791 to the `packages` configuration field. 2023-07-07T09:02:05,791 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,791 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,791 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,792 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,792 If you don't want 'funid.external.BLAST_Windows.bin' to be distributed and are 2023-07-07T09:02:05,792 already explicitly excluding 'funid.external.BLAST_Windows.bin' via 2023-07-07T09:02:05,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,792 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,792 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,793 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,793 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,793 even if it does not contain any `.py` files. 2023-07-07T09:02:05,793 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,793 directory, all directories are treated like packages. 2023-07-07T09:02:05,793 ******************************************************************************** 2023-07-07T09:02:05,794 !! 2023-07-07T09:02:05,794 check.warn(importable) 2023-07-07T09:02:05,794 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2023-07-07T09:02:05,794 !! 2023-07-07T09:02:05,794 ******************************************************************************** 2023-07-07T09:02:05,794 ############################ 2023-07-07T09:02:05,794 # Package would be ignored # 2023-07-07T09:02:05,795 ############################ 2023-07-07T09:02:05,795 Python recognizes 'funid.external.BLAST_Windows.doc' as an importable package[^1], 2023-07-07T09:02:05,795 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,795 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,795 package, please make sure that 'funid.external.BLAST_Windows.doc' is explicitly added 2023-07-07T09:02:05,795 to the `packages` configuration field. 2023-07-07T09:02:05,796 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,796 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,796 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,796 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,796 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,796 If you don't want 'funid.external.BLAST_Windows.doc' to be distributed and are 2023-07-07T09:02:05,797 already explicitly excluding 'funid.external.BLAST_Windows.doc' via 2023-07-07T09:02:05,797 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,797 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,797 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,797 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,797 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,798 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,798 even if it does not contain any `.py` files. 2023-07-07T09:02:05,798 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,798 directory, all directories are treated like packages. 2023-07-07T09:02:05,798 ******************************************************************************** 2023-07-07T09:02:05,798 !! 2023-07-07T09:02:05,798 check.warn(importable) 2023-07-07T09:02:05,798 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.FastTree_Windows' is absent from the `packages` configuration. 2023-07-07T09:02:05,799 !! 2023-07-07T09:02:05,799 ******************************************************************************** 2023-07-07T09:02:05,799 ############################ 2023-07-07T09:02:05,799 # Package would be ignored # 2023-07-07T09:02:05,799 ############################ 2023-07-07T09:02:05,799 Python recognizes 'funid.external.FastTree_Windows' as an importable package[^1], 2023-07-07T09:02:05,799 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,800 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,800 package, please make sure that 'funid.external.FastTree_Windows' is explicitly added 2023-07-07T09:02:05,800 to the `packages` configuration field. 2023-07-07T09:02:05,800 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,800 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,800 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,800 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,801 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,801 If you don't want 'funid.external.FastTree_Windows' to be distributed and are 2023-07-07T09:02:05,801 already explicitly excluding 'funid.external.FastTree_Windows' via 2023-07-07T09:02:05,801 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,801 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,801 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,802 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,802 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,802 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,802 even if it does not contain any `.py` files. 2023-07-07T09:02:05,802 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,803 directory, all directories are treated like packages. 2023-07-07T09:02:05,803 ******************************************************************************** 2023-07-07T09:02:05,803 !! 2023-07-07T09:02:05,803 check.warn(importable) 2023-07-07T09:02:05,803 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.RAxML_Windows' is absent from the `packages` configuration. 2023-07-07T09:02:05,803 !! 2023-07-07T09:02:05,803 ******************************************************************************** 2023-07-07T09:02:05,804 ############################ 2023-07-07T09:02:05,804 # Package would be ignored # 2023-07-07T09:02:05,804 ############################ 2023-07-07T09:02:05,804 Python recognizes 'funid.external.RAxML_Windows' as an importable package[^1], 2023-07-07T09:02:05,804 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,804 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,804 package, please make sure that 'funid.external.RAxML_Windows' is explicitly added 2023-07-07T09:02:05,805 to the `packages` configuration field. 2023-07-07T09:02:05,805 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,805 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,805 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,806 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,806 If you don't want 'funid.external.RAxML_Windows' to be distributed and are 2023-07-07T09:02:05,806 already explicitly excluding 'funid.external.RAxML_Windows' via 2023-07-07T09:02:05,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,806 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,806 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,807 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,807 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,807 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,807 even if it does not contain any `.py` files. 2023-07-07T09:02:05,807 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,807 directory, all directories are treated like packages. 2023-07-07T09:02:05,808 ******************************************************************************** 2023-07-07T09:02:05,808 !! 2023-07-07T09:02:05,808 check.warn(importable) 2023-07-07T09:02:05,808 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows' is absent from the `packages` configuration. 2023-07-07T09:02:05,808 !! 2023-07-07T09:02:05,808 ******************************************************************************** 2023-07-07T09:02:05,809 ############################ 2023-07-07T09:02:05,809 # Package would be ignored # 2023-07-07T09:02:05,809 ############################ 2023-07-07T09:02:05,809 Python recognizes 'funid.external.mmseqs_Windows' as an importable package[^1], 2023-07-07T09:02:05,809 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,809 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,809 package, please make sure that 'funid.external.mmseqs_Windows' is explicitly added 2023-07-07T09:02:05,810 to the `packages` configuration field. 2023-07-07T09:02:05,810 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,810 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,810 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,810 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,811 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,811 If you don't want 'funid.external.mmseqs_Windows' to be distributed and are 2023-07-07T09:02:05,811 already explicitly excluding 'funid.external.mmseqs_Windows' via 2023-07-07T09:02:05,811 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,812 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,812 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,812 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,813 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,813 even if it does not contain any `.py` files. 2023-07-07T09:02:05,813 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,813 directory, all directories are treated like packages. 2023-07-07T09:02:05,813 ******************************************************************************** 2023-07-07T09:02:05,813 !! 2023-07-07T09:02:05,813 check.warn(importable) 2023-07-07T09:02:05,814 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2023-07-07T09:02:05,814 !! 2023-07-07T09:02:05,814 ******************************************************************************** 2023-07-07T09:02:05,814 ############################ 2023-07-07T09:02:05,814 # Package would be ignored # 2023-07-07T09:02:05,814 ############################ 2023-07-07T09:02:05,814 Python recognizes 'funid.external.mmseqs_Windows.bin' as an importable package[^1], 2023-07-07T09:02:05,815 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,815 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,815 package, please make sure that 'funid.external.mmseqs_Windows.bin' is explicitly added 2023-07-07T09:02:05,815 to the `packages` configuration field. 2023-07-07T09:02:05,815 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,815 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,816 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,816 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,816 If you don't want 'funid.external.mmseqs_Windows.bin' to be distributed and are 2023-07-07T09:02:05,816 already explicitly excluding 'funid.external.mmseqs_Windows.bin' via 2023-07-07T09:02:05,816 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,817 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,817 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,817 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,817 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,817 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,818 even if it does not contain any `.py` files. 2023-07-07T09:02:05,818 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,818 directory, all directories are treated like packages. 2023-07-07T09:02:05,818 ******************************************************************************** 2023-07-07T09:02:05,818 !! 2023-07-07T09:02:05,818 check.warn(importable) 2023-07-07T09:02:05,818 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2023-07-07T09:02:05,819 !! 2023-07-07T09:02:05,819 ******************************************************************************** 2023-07-07T09:02:05,819 ############################ 2023-07-07T09:02:05,819 # Package would be ignored # 2023-07-07T09:02:05,819 ############################ 2023-07-07T09:02:05,819 Python recognizes 'funid.external.mmseqs_Windows.examples' as an importable package[^1], 2023-07-07T09:02:05,819 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,820 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,820 package, please make sure that 'funid.external.mmseqs_Windows.examples' is explicitly added 2023-07-07T09:02:05,820 to the `packages` configuration field. 2023-07-07T09:02:05,820 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,820 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,820 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,820 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,821 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,821 If you don't want 'funid.external.mmseqs_Windows.examples' to be distributed and are 2023-07-07T09:02:05,821 already explicitly excluding 'funid.external.mmseqs_Windows.examples' via 2023-07-07T09:02:05,821 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,821 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,822 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,822 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,822 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,822 even if it does not contain any `.py` files. 2023-07-07T09:02:05,823 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,823 directory, all directories are treated like packages. 2023-07-07T09:02:05,823 ******************************************************************************** 2023-07-07T09:02:05,823 !! 2023-07-07T09:02:05,823 check.warn(importable) 2023-07-07T09:02:05,823 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2023-07-07T09:02:05,823 !! 2023-07-07T09:02:05,824 ******************************************************************************** 2023-07-07T09:02:05,824 ############################ 2023-07-07T09:02:05,824 # Package would be ignored # 2023-07-07T09:02:05,824 ############################ 2023-07-07T09:02:05,824 Python recognizes 'funid.external.mmseqs_Windows.matrices' as an importable package[^1], 2023-07-07T09:02:05,824 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,825 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,825 package, please make sure that 'funid.external.mmseqs_Windows.matrices' is explicitly added 2023-07-07T09:02:05,825 to the `packages` configuration field. 2023-07-07T09:02:05,825 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,825 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,825 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,825 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,826 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,826 If you don't want 'funid.external.mmseqs_Windows.matrices' to be distributed and are 2023-07-07T09:02:05,826 already explicitly excluding 'funid.external.mmseqs_Windows.matrices' via 2023-07-07T09:02:05,826 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,826 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,826 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,827 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,827 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,827 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,827 even if it does not contain any `.py` files. 2023-07-07T09:02:05,827 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,828 directory, all directories are treated like packages. 2023-07-07T09:02:05,828 ******************************************************************************** 2023-07-07T09:02:05,828 !! 2023-07-07T09:02:05,828 check.warn(importable) 2023-07-07T09:02:05,828 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2023-07-07T09:02:05,828 !! 2023-07-07T09:02:05,828 ******************************************************************************** 2023-07-07T09:02:05,829 ############################ 2023-07-07T09:02:05,829 # Package would be ignored # 2023-07-07T09:02:05,829 ############################ 2023-07-07T09:02:05,829 Python recognizes 'funid.external.mmseqs_Windows.util' as an importable package[^1], 2023-07-07T09:02:05,829 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,829 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,829 package, please make sure that 'funid.external.mmseqs_Windows.util' is explicitly added 2023-07-07T09:02:05,830 to the `packages` configuration field. 2023-07-07T09:02:05,830 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,830 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,830 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,830 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,830 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,831 If you don't want 'funid.external.mmseqs_Windows.util' to be distributed and are 2023-07-07T09:02:05,831 already explicitly excluding 'funid.external.mmseqs_Windows.util' via 2023-07-07T09:02:05,831 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,831 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,831 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,831 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,832 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,832 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,832 even if it does not contain any `.py` files. 2023-07-07T09:02:05,832 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,832 directory, all directories are treated like packages. 2023-07-07T09:02:05,832 ******************************************************************************** 2023-07-07T09:02:05,833 !! 2023-07-07T09:02:05,833 check.warn(importable) 2023-07-07T09:02:05,833 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium' is absent from the `packages` configuration. 2023-07-07T09:02:05,833 !! 2023-07-07T09:02:05,833 ******************************************************************************** 2023-07-07T09:02:05,833 ############################ 2023-07-07T09:02:05,834 # Package would be ignored # 2023-07-07T09:02:05,834 ############################ 2023-07-07T09:02:05,834 Python recognizes 'funid.test_dataset.penicillium' as an importable package[^1], 2023-07-07T09:02:05,834 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,834 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,834 package, please make sure that 'funid.test_dataset.penicillium' is explicitly added 2023-07-07T09:02:05,834 to the `packages` configuration field. 2023-07-07T09:02:05,835 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,835 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,835 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,835 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,836 If you don't want 'funid.test_dataset.penicillium' to be distributed and are 2023-07-07T09:02:05,836 already explicitly excluding 'funid.test_dataset.penicillium' via 2023-07-07T09:02:05,836 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,836 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,836 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,836 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,836 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,837 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,837 even if it does not contain any `.py` files. 2023-07-07T09:02:05,837 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,837 directory, all directories are treated like packages. 2023-07-07T09:02:05,837 ******************************************************************************** 2023-07-07T09:02:05,838 !! 2023-07-07T09:02:05,838 check.warn(importable) 2023-07-07T09:02:05,838 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2023-07-07T09:02:05,838 !! 2023-07-07T09:02:05,838 ******************************************************************************** 2023-07-07T09:02:05,838 ############################ 2023-07-07T09:02:05,838 # Package would be ignored # 2023-07-07T09:02:05,838 ############################ 2023-07-07T09:02:05,839 Python recognizes 'funid.test_dataset.penicillium.DB' as an importable package[^1], 2023-07-07T09:02:05,839 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,839 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,839 package, please make sure that 'funid.test_dataset.penicillium.DB' is explicitly added 2023-07-07T09:02:05,839 to the `packages` configuration field. 2023-07-07T09:02:05,839 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,840 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,840 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,840 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,840 If you don't want 'funid.test_dataset.penicillium.DB' to be distributed and are 2023-07-07T09:02:05,840 already explicitly excluding 'funid.test_dataset.penicillium.DB' via 2023-07-07T09:02:05,841 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,841 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,841 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,841 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,842 even if it does not contain any `.py` files. 2023-07-07T09:02:05,842 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,842 directory, all directories are treated like packages. 2023-07-07T09:02:05,842 ******************************************************************************** 2023-07-07T09:02:05,842 !! 2023-07-07T09:02:05,842 check.warn(importable) 2023-07-07T09:02:05,843 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2023-07-07T09:02:05,843 !! 2023-07-07T09:02:05,843 ******************************************************************************** 2023-07-07T09:02:05,843 ############################ 2023-07-07T09:02:05,843 # Package would be ignored # 2023-07-07T09:02:05,843 ############################ 2023-07-07T09:02:05,843 Python recognizes 'funid.test_dataset.penicillium.Query' as an importable package[^1], 2023-07-07T09:02:05,844 but it is absent from setuptools' `packages` configuration. 2023-07-07T09:02:05,844 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T09:02:05,844 package, please make sure that 'funid.test_dataset.penicillium.Query' is explicitly added 2023-07-07T09:02:05,844 to the `packages` configuration field. 2023-07-07T09:02:05,844 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T09:02:05,844 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T09:02:05,844 instead of `find_packages(...)`/`find:`). 2023-07-07T09:02:05,845 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T09:02:05,845 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T09:02:05,845 If you don't want 'funid.test_dataset.penicillium.Query' to be distributed and are 2023-07-07T09:02:05,845 already explicitly excluding 'funid.test_dataset.penicillium.Query' via 2023-07-07T09:02:05,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T09:02:05,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T09:02:05,846 combination with a more fine grained `package-data` configuration. 2023-07-07T09:02:05,846 You can read more about "package data files" on setuptools documentation page: 2023-07-07T09:02:05,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T09:02:05,846 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T09:02:05,847 even if it does not contain any `.py` files. 2023-07-07T09:02:05,847 On the other hand, currently there is no concept of package data 2023-07-07T09:02:05,847 directory, all directories are treated like packages. 2023-07-07T09:02:05,847 ******************************************************************************** 2023-07-07T09:02:05,847 !! 2023-07-07T09:02:05,847 check.warn(importable) 2023-07-07T09:02:05,847 creating build/lib/funid/external 2023-07-07T09:02:05,847 copying funid/external/MAFFT_LICENSE -> build/lib/funid/external 2023-07-07T09:02:05,848 copying funid/external/MAFFT_Windows.zip -> build/lib/funid/external 2023-07-07T09:02:06,245 copying funid/external/__init__.py -> build/lib/funid/external 2023-07-07T09:02:06,246 creating build/lib/funid/external/BLAST_Windows 2023-07-07T09:02:06,247 copying funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funid/external/BLAST_Windows 2023-07-07T09:02:06,251 creating build/lib/funid/external/BLAST_Windows/bin 2023-07-07T09:02:06,251 copying funid/external/BLAST_Windows/bin/blastn.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-07-07T09:02:06,490 copying funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funid/external/BLAST_Windows/bin 2023-07-07T09:02:06,492 copying funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funid/external/BLAST_Windows/bin 2023-07-07T09:02:06,495 copying funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-07-07T09:02:06,498 copying funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-07-07T09:02:06,679 copying funid/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funid/external/BLAST_Windows/bin 2023-07-07T09:02:06,684 copying funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-07-07T09:02:06,687 creating build/lib/funid/external/BLAST_Windows/doc 2023-07-07T09:02:06,689 copying funid/external/BLAST_Windows/doc/README.txt -> build/lib/funid/external/BLAST_Windows/doc 2023-07-07T09:02:06,691 creating build/lib/funid/external/FastTree_Windows 2023-07-07T09:02:06,692 copying funid/external/FastTree_Windows/FastTree.exe -> build/lib/funid/external/FastTree_Windows 2023-07-07T09:02:06,699 creating build/lib/funid/external/Gblocks_Windows_0.91b 2023-07-07T09:02:06,700 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-07T09:02:06,701 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-07T09:02:06,708 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-07T09:02:06,711 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-07T09:02:06,713 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-07T09:02:06,714 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-07T09:02:06,718 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:06,719 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:06,722 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:06,725 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:06,728 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:06,731 creating build/lib/funid/external/RAxML_Windows 2023-07-07T09:02:06,732 copying funid/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funid/external/RAxML_Windows 2023-07-07T09:02:06,737 copying funid/external/RAxML_Windows/README -> build/lib/funid/external/RAxML_Windows 2023-07-07T09:02:06,739 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-07-07T09:02:06,776 creating build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:06,777 copying funid/external/iqtree-2.1.3-Windows/example.cf -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:06,814 copying funid/external/iqtree-2.1.3-Windows/example.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:06,816 copying funid/external/iqtree-2.1.3-Windows/example.phy -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:06,819 copying funid/external/iqtree-2.1.3-Windows/models.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:06,824 creating build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-07T09:02:06,825 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-07T09:02:06,970 copying funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-07T09:02:06,989 creating build/lib/funid/external/mmseqs_Windows 2023-07-07T09:02:06,990 copying funid/external/mmseqs_Windows/LICENSE.md -> build/lib/funid/external/mmseqs_Windows 2023-07-07T09:02:06,994 copying funid/external/mmseqs_Windows/README.md -> build/lib/funid/external/mmseqs_Windows 2023-07-07T09:02:06,996 copying funid/external/mmseqs_Windows/mmseqs.bat -> build/lib/funid/external/mmseqs_Windows 2023-07-07T09:02:06,998 creating build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,000 copying funid/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,013 copying funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,016 copying funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,021 copying funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,028 copying funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,065 copying funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,120 copying funid/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,124 copying funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:07,298 creating build/lib/funid/external/mmseqs_Windows/examples 2023-07-07T09:02:07,299 copying funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funid/external/mmseqs_Windows/examples 2023-07-07T09:02:07,307 creating build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,309 copying funid/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,311 copying funid/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,314 copying funid/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,316 copying funid/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,318 copying funid/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,320 copying funid/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,323 copying funid/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,325 copying funid/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,327 copying funid/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,330 copying funid/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,332 copying funid/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,334 copying funid/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,336 copying funid/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,339 copying funid/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,341 copying funid/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,343 copying funid/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,345 copying funid/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,348 copying funid/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,350 copying funid/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,352 copying funid/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,354 copying funid/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,356 copying funid/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,359 copying funid/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,361 copying funid/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,363 copying funid/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,366 copying funid/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,368 copying funid/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,370 copying funid/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,372 copying funid/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,375 copying funid/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,377 copying funid/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,380 copying funid/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,382 copying funid/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,385 copying funid/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,388 copying funid/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,390 copying funid/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,392 copying funid/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,395 copying funid/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,397 copying funid/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,399 copying funid/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,401 copying funid/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,403 copying funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:07,406 creating build/lib/funid/external/mmseqs_Windows/util 2023-07-07T09:02:07,407 copying funid/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funid/external/mmseqs_Windows/util 2023-07-07T09:02:07,409 creating build/lib/funid/external/trimal.v1.2rev59 2023-07-07T09:02:07,409 creating build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:07,411 copying funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:07,413 copying funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:07,416 copying funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:07,419 copying funid/external/trimal.v1.2rev59/trimAl/README -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:07,421 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-07T09:02:07,422 copying funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-07T09:02:07,435 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,436 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,441 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,444 copying funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,446 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,449 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,452 copying funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,456 copying funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,458 copying funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,462 copying funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,466 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,469 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,471 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,475 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,477 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,480 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,483 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,486 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,488 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,492 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,494 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,497 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,500 copying funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:07,502 copying funid/data/Option_manager.xlsx -> build/lib/funid/data 2023-07-07T09:02:07,505 copying funid/data/genus_line.txt -> build/lib/funid/data 2023-07-07T09:02:07,509 creating build/lib/funid/test_dataset 2023-07-07T09:02:07,510 creating build/lib/funid/test_dataset/penicillium 2023-07-07T09:02:07,511 copying funid/test_dataset/penicillium/Options.config -> build/lib/funid/test_dataset/penicillium 2023-07-07T09:02:07,514 copying funid/test_dataset/penicillium/preset.yaml -> build/lib/funid/test_dataset/penicillium 2023-07-07T09:02:07,516 creating build/lib/funid/test_dataset/penicillium/DB 2023-07-07T09:02:07,518 copying funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funid/test_dataset/penicillium/DB 2023-07-07T09:02:07,526 creating build/lib/funid/test_dataset/penicillium/Query 2023-07-07T09:02:07,527 copying funid/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funid/test_dataset/penicillium/Query 2023-07-07T09:02:07,530 creating build/lib/funid/preset 2023-07-07T09:02:07,531 copying funid/preset/accurate.yaml -> build/lib/funid/preset 2023-07-07T09:02:07,533 copying funid/preset/fast.yaml -> build/lib/funid/preset 2023-07-07T09:02:07,567 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-07T09:02:07,568 !! 2023-07-07T09:02:07,568 ******************************************************************************** 2023-07-07T09:02:07,568 Please avoid running ``setup.py`` directly. 2023-07-07T09:02:07,568 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-07T09:02:07,568 other standards-based tools. 2023-07-07T09:02:07,569 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-07T09:02:07,569 ******************************************************************************** 2023-07-07T09:02:07,569 !! 2023-07-07T09:02:07,569 self.initialize_options() 2023-07-07T09:02:07,594 installing to build/bdist.linux-armv7l/wheel 2023-07-07T09:02:07,595 running install 2023-07-07T09:02:07,619 running install_lib 2023-07-07T09:02:07,652 creating build/bdist.linux-armv7l 2023-07-07T09:02:07,653 creating build/bdist.linux-armv7l/wheel 2023-07-07T09:02:07,656 creating build/bdist.linux-armv7l/wheel/funid 2023-07-07T09:02:07,659 creating build/bdist.linux-armv7l/wheel/funid/data 2023-07-07T09:02:07,663 copying build/lib/funid/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-07T09:02:07,665 copying build/lib/funid/data/__init__.py -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-07T09:02:07,667 copying build/lib/funid/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-07T09:02:07,669 copying build/lib/funid/FunID_GUI.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-07T09:02:07,672 creating build/bdist.linux-armv7l/wheel/funid/test_dataset 2023-07-07T09:02:07,674 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-07T09:02:07,675 copying build/lib/funid/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-07T09:02:07,677 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-07-07T09:02:07,679 copying build/lib/funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-07-07T09:02:07,687 copying build/lib/funid/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-07T09:02:07,691 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-07-07T09:02:07,692 copying build/lib/funid/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-07-07T09:02:07,696 copying build/lib/funid/main.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-07T09:02:07,699 copying build/lib/funid/__init__.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-07T09:02:07,705 creating build/bdist.linux-armv7l/wheel/funid/preset 2023-07-07T09:02:07,710 copying build/lib/funid/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-07-07T09:02:07,725 copying build/lib/funid/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-07-07T09:02:07,729 creating build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,729 copying build/lib/funid/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,732 copying build/lib/funid/src/cluster.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,735 copying build/lib/funid/src/search.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,738 copying build/lib/funid/src/logger.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,740 copying build/lib/funid/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,742 copying build/lib/funid/src/hasher.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,744 copying build/lib/funid/src/save.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,747 copying build/lib/funid/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,751 copying build/lib/funid/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,753 copying build/lib/funid/src/logics.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,755 copying build/lib/funid/src/initialize.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,758 copying build/lib/funid/src/patch.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,760 copying build/lib/funid/src/command.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,762 copying build/lib/funid/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,765 copying build/lib/funid/src/tree.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,767 copying build/lib/funid/src/ext.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,770 copying build/lib/funid/src/__init__.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,771 copying build/lib/funid/src/tool.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,773 copying build/lib/funid/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,776 copying build/lib/funid/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,778 copying build/lib/funid/src/align.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,780 copying build/lib/funid/src/reporter.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,783 copying build/lib/funid/src/validation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,785 copying build/lib/funid/src/trim.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,787 copying build/lib/funid/src/manage_input.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,789 copying build/lib/funid/src/dataset.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-07T09:02:07,792 creating build/bdist.linux-armv7l/wheel/funid/external 2023-07-07T09:02:07,793 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:07,794 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:07,796 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.phy -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:07,799 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.cf -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:07,833 copying build/lib/funid/external/iqtree-2.1.3-Windows/models.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-07T09:02:07,838 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-07T09:02:07,839 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-07T09:02:08,013 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-07T09:02:08,036 creating build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-07T09:02:08,037 copying build/lib/funid/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-07T09:02:08,039 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-07T09:02:08,064 copying build/lib/funid/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-07T09:02:08,067 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59 2023-07-07T09:02:08,069 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:08,070 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/README -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:08,073 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,074 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,076 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,078 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,080 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,082 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,084 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,088 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,090 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,092 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,095 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,098 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,101 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,103 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,105 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,108 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,111 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,113 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,116 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,118 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,122 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,124 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,126 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-07T09:02:08,129 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:08,131 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:08,133 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-07T09:02:08,137 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-07T09:02:08,138 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-07T09:02:08,155 copying build/lib/funid/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-07T09:02:08,546 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-07T09:02:08,547 copying build/lib/funid/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-07T09:02:08,549 copying build/lib/funid/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-07T09:02:08,552 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-07-07T09:02:08,553 copying build/lib/funid/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-07-07T09:02:08,556 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-07-07T09:02:08,557 copying build/lib/funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-07-07T09:02:08,564 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,565 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,567 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,569 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,571 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,573 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,575 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,577 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,579 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,581 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,583 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,585 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,588 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,590 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,592 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,594 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,596 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,598 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,600 copying build/lib/funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,602 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,604 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,606 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,608 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,610 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,612 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,614 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,616 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,618 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,620 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,622 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,624 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,626 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,628 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,630 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,632 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,634 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,636 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,638 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,640 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,643 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,645 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,647 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,649 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-07T09:02:08,650 copying build/lib/funid/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-07T09:02:08,653 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,654 copying build/lib/funid/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,666 copying build/lib/funid/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,669 copying build/lib/funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,731 copying build/lib/funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,735 copying build/lib/funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,739 copying build/lib/funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,745 copying build/lib/funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,934 copying build/lib/funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-07T09:02:08,964 copying build/lib/funid/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-07T09:02:08,966 copying build/lib/funid/external/__init__.py -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-07T09:02:08,968 creating build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-07-07T09:02:08,969 copying build/lib/funid/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-07-07T09:02:08,977 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b 2023-07-07T09:02:08,978 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-07T09:02:08,979 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-07T09:02:08,981 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-07T09:02:08,989 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-07T09:02:08,989 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-07T09:02:08,995 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-07T09:02:08,997 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:08,998 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:09,000 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:09,002 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:09,004 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-07T09:02:09,007 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-07-07T09:02:09,008 copying build/lib/funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-07-07T09:02:09,012 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-07-07T09:02:09,013 copying build/lib/funid/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-07-07T09:02:09,015 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-07T09:02:09,016 copying build/lib/funid/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-07T09:02:09,021 copying build/lib/funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-07T09:02:09,024 copying build/lib/funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-07T09:02:09,246 copying build/lib/funid/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-07T09:02:09,499 copying build/lib/funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-07T09:02:09,502 copying build/lib/funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-07T09:02:09,504 copying build/lib/funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-07T09:02:09,507 running install_egg_info 2023-07-07T09:02:09,538 Copying FunID.egg-info to build/bdist.linux-armv7l/wheel/FunID-0.3.12-py3.9.egg-info 2023-07-07T09:02:09,552 running install_scripts 2023-07-07T09:02:09,574 creating build/bdist.linux-armv7l/wheel/FunID-0.3.12.dist-info/WHEEL 2023-07-07T09:02:09,576 creating '/tmp/pip-wheel-vs9m8zks/FunID-0.3.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-07T09:02:09,581 adding 'funid/FunID_GUI.py' 2023-07-07T09:02:09,583 adding 'funid/__init__.py' 2023-07-07T09:02:09,584 adding 'funid/main.py' 2023-07-07T09:02:09,588 adding 'funid/data/Option_manager.xlsx' 2023-07-07T09:02:09,589 adding 'funid/data/__init__.py' 2023-07-07T09:02:09,597 adding 'funid/data/genus_line.txt' 2023-07-07T09:02:09,604 adding 'funid/external/MAFFT_LICENSE' 2023-07-07T09:02:12,651 adding 'funid/external/MAFFT_Windows.zip' 2023-07-07T09:02:12,819 adding 'funid/external/__init__.py' 2023-07-07T09:02:12,828 adding 'funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2023-07-07T09:02:15,782 adding 'funid/external/BLAST_Windows/bin/blastn.exe' 2023-07-07T09:02:15,888 adding 'funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2023-07-07T09:02:15,889 adding 'funid/external/BLAST_Windows/bin/get_species_taxids.sh' 2023-07-07T09:02:15,894 adding 'funid/external/BLAST_Windows/bin/legacy_blast.pl' 2023-07-07T09:02:17,946 adding 'funid/external/BLAST_Windows/bin/makeblastdb.exe' 2023-07-07T09:02:18,045 adding 'funid/external/BLAST_Windows/bin/nghttp2.dll' 2023-07-07T09:02:18,049 adding 'funid/external/BLAST_Windows/bin/update_blastdb.pl' 2023-07-07T09:02:18,051 adding 'funid/external/BLAST_Windows/doc/README.txt' 2023-07-07T09:02:18,108 adding 'funid/external/FastTree_Windows/FastTree.exe' 2023-07-07T09:02:18,149 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2023-07-07T09:02:18,152 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2023-07-07T09:02:18,154 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2023-07-07T09:02:18,159 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2023-07-07T09:02:18,161 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2023-07-07T09:02:18,163 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2023-07-07T09:02:18,165 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2023-07-07T09:02:18,167 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2023-07-07T09:02:18,174 adding 'funid/external/RAxML_Windows/GPL-3.0.txt' 2023-07-07T09:02:18,175 adding 'funid/external/RAxML_Windows/README' 2023-07-07T09:02:18,467 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2023-07-07T09:02:18,559 adding 'funid/external/iqtree-2.1.3-Windows/example.cf' 2023-07-07T09:02:18,574 adding 'funid/external/iqtree-2.1.3-Windows/example.nex' 2023-07-07T09:02:18,587 adding 'funid/external/iqtree-2.1.3-Windows/example.phy' 2023-07-07T09:02:18,617 adding 'funid/external/iqtree-2.1.3-Windows/models.nex' 2023-07-07T09:02:20,333 adding 'funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe' 2023-07-07T09:02:20,582 adding 'funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll' 2023-07-07T09:02:20,596 adding 'funid/external/mmseqs_Windows/LICENSE.md' 2023-07-07T09:02:20,598 adding 'funid/external/mmseqs_Windows/README.md' 2023-07-07T09:02:20,600 adding 'funid/external/mmseqs_Windows/mmseqs.bat' 2023-07-07T09:02:20,733 adding 'funid/external/mmseqs_Windows/bin/busybox.exe' 2023-07-07T09:02:20,747 adding 'funid/external/mmseqs_Windows/bin/cygbz2-1.dll' 2023-07-07T09:02:20,761 adding 'funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2023-07-07T09:02:20,804 adding 'funid/external/mmseqs_Windows/bin/cyggomp-1.dll' 2023-07-07T09:02:21,067 adding 'funid/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2023-07-07T09:02:21,667 adding 'funid/external/mmseqs_Windows/bin/cygwin1.dll' 2023-07-07T09:02:21,705 adding 'funid/external/mmseqs_Windows/bin/cygz.dll' 2023-07-07T09:02:25,004 adding 'funid/external/mmseqs_Windows/bin/mmseqs.exe' 2023-07-07T09:02:25,128 adding 'funid/external/mmseqs_Windows/examples/QUERY.fasta' 2023-07-07T09:02:25,132 adding 'funid/external/mmseqs_Windows/matrices/PAM10.out' 2023-07-07T09:02:25,133 adding 'funid/external/mmseqs_Windows/matrices/PAM100.out' 2023-07-07T09:02:25,134 adding 'funid/external/mmseqs_Windows/matrices/PAM110.out' 2023-07-07T09:02:25,136 adding 'funid/external/mmseqs_Windows/matrices/PAM120.out' 2023-07-07T09:02:25,137 adding 'funid/external/mmseqs_Windows/matrices/PAM130.out' 2023-07-07T09:02:25,138 adding 'funid/external/mmseqs_Windows/matrices/PAM140.out' 2023-07-07T09:02:25,139 adding 'funid/external/mmseqs_Windows/matrices/PAM150.out' 2023-07-07T09:02:25,141 adding 'funid/external/mmseqs_Windows/matrices/PAM160.out' 2023-07-07T09:02:25,142 adding 'funid/external/mmseqs_Windows/matrices/PAM170.out' 2023-07-07T09:02:25,143 adding 'funid/external/mmseqs_Windows/matrices/PAM180.out' 2023-07-07T09:02:25,144 adding 'funid/external/mmseqs_Windows/matrices/PAM190.out' 2023-07-07T09:02:25,146 adding 'funid/external/mmseqs_Windows/matrices/PAM20.out' 2023-07-07T09:02:25,147 adding 'funid/external/mmseqs_Windows/matrices/PAM30.out' 2023-07-07T09:02:25,148 adding 'funid/external/mmseqs_Windows/matrices/PAM40.out' 2023-07-07T09:02:25,149 adding 'funid/external/mmseqs_Windows/matrices/PAM50.out' 2023-07-07T09:02:25,151 adding 'funid/external/mmseqs_Windows/matrices/PAM60.out' 2023-07-07T09:02:25,152 adding 'funid/external/mmseqs_Windows/matrices/PAM70.out' 2023-07-07T09:02:25,153 adding 'funid/external/mmseqs_Windows/matrices/PAM80.out' 2023-07-07T09:02:25,155 adding 'funid/external/mmseqs_Windows/matrices/PAM90.out' 2023-07-07T09:02:25,156 adding 'funid/external/mmseqs_Windows/matrices/VTML10.out' 2023-07-07T09:02:25,157 adding 'funid/external/mmseqs_Windows/matrices/VTML120.out' 2023-07-07T09:02:25,158 adding 'funid/external/mmseqs_Windows/matrices/VTML160.out' 2023-07-07T09:02:25,160 adding 'funid/external/mmseqs_Windows/matrices/VTML20.out' 2023-07-07T09:02:25,161 adding 'funid/external/mmseqs_Windows/matrices/VTML40.out' 2023-07-07T09:02:25,162 adding 'funid/external/mmseqs_Windows/matrices/VTML80.out' 2023-07-07T09:02:25,164 adding 'funid/external/mmseqs_Windows/matrices/blosum100.out' 2023-07-07T09:02:25,165 adding 'funid/external/mmseqs_Windows/matrices/blosum30.out' 2023-07-07T09:02:25,167 adding 'funid/external/mmseqs_Windows/matrices/blosum35.out' 2023-07-07T09:02:25,168 adding 'funid/external/mmseqs_Windows/matrices/blosum40.out' 2023-07-07T09:02:25,170 adding 'funid/external/mmseqs_Windows/matrices/blosum45.out' 2023-07-07T09:02:25,172 adding 'funid/external/mmseqs_Windows/matrices/blosum50.out' 2023-07-07T09:02:25,173 adding 'funid/external/mmseqs_Windows/matrices/blosum55.out' 2023-07-07T09:02:25,174 adding 'funid/external/mmseqs_Windows/matrices/blosum60.out' 2023-07-07T09:02:25,176 adding 'funid/external/mmseqs_Windows/matrices/blosum62.out' 2023-07-07T09:02:25,177 adding 'funid/external/mmseqs_Windows/matrices/blosum65.out' 2023-07-07T09:02:25,179 adding 'funid/external/mmseqs_Windows/matrices/blosum70.out' 2023-07-07T09:02:25,180 adding 'funid/external/mmseqs_Windows/matrices/blosum75.out' 2023-07-07T09:02:25,182 adding 'funid/external/mmseqs_Windows/matrices/blosum80.out' 2023-07-07T09:02:25,183 adding 'funid/external/mmseqs_Windows/matrices/blosum85.out' 2023-07-07T09:02:25,185 adding 'funid/external/mmseqs_Windows/matrices/blosum90.out' 2023-07-07T09:02:25,186 adding 'funid/external/mmseqs_Windows/matrices/blosum95.out' 2023-07-07T09:02:25,187 adding 'funid/external/mmseqs_Windows/matrices/nucleotide.out' 2023-07-07T09:02:25,189 adding 'funid/external/mmseqs_Windows/util/bash-completion.sh' 2023-07-07T09:02:25,191 adding 'funid/external/trimal.v1.2rev59/trimAl/AUTHORS' 2023-07-07T09:02:25,193 adding 'funid/external/trimal.v1.2rev59/trimAl/CHANGELOG' 2023-07-07T09:02:25,199 adding 'funid/external/trimal.v1.2rev59/trimAl/LICENSE' 2023-07-07T09:02:25,200 adding 'funid/external/trimal.v1.2rev59/trimAl/README' 2023-07-07T09:02:25,291 adding 'funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe' 2023-07-07T09:02:25,302 adding 'funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp' 2023-07-07T09:02:25,305 adding 'funid/external/trimal.v1.2rev59/trimAl/source/alignment.h' 2023-07-07T09:02:25,306 adding 'funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp' 2023-07-07T09:02:25,308 adding 'funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp' 2023-07-07T09:02:25,309 adding 'funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h' 2023-07-07T09:02:25,314 adding 'funid/external/trimal.v1.2rev59/trimAl/source/main.cpp' 2023-07-07T09:02:25,316 adding 'funid/external/trimal.v1.2rev59/trimAl/source/makefile' 2023-07-07T09:02:25,318 adding 'funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp' 2023-07-07T09:02:25,322 adding 'funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp' 2023-07-07T09:02:25,324 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp' 2023-07-07T09:02:25,326 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h' 2023-07-07T09:02:25,327 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp' 2023-07-07T09:02:25,329 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h' 2023-07-07T09:02:25,331 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp' 2023-07-07T09:02:25,333 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h' 2023-07-07T09:02:25,334 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp' 2023-07-07T09:02:25,335 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h' 2023-07-07T09:02:25,337 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp' 2023-07-07T09:02:25,339 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h' 2023-07-07T09:02:25,341 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp' 2023-07-07T09:02:25,342 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.h' 2023-07-07T09:02:25,343 adding 'funid/external/trimal.v1.2rev59/trimAl/source/values.h' 2023-07-07T09:02:25,345 adding 'funid/preset/accurate.yaml' 2023-07-07T09:02:25,346 adding 'funid/preset/fast.yaml' 2023-07-07T09:02:25,348 adding 'funid/src/__init__.py' 2023-07-07T09:02:25,349 adding 'funid/src/align.py' 2023-07-07T09:02:25,352 adding 'funid/src/cluster.py' 2023-07-07T09:02:25,354 adding 'funid/src/command.py' 2023-07-07T09:02:25,356 adding 'funid/src/concatenate.py' 2023-07-07T09:02:25,359 adding 'funid/src/dataset.py' 2023-07-07T09:02:25,361 adding 'funid/src/ext.py' 2023-07-07T09:02:25,362 adding 'funid/src/hasher.py' 2023-07-07T09:02:25,365 adding 'funid/src/initialize.py' 2023-07-07T09:02:25,366 adding 'funid/src/logger.py' 2023-07-07T09:02:25,367 adding 'funid/src/logics.py' 2023-07-07T09:02:25,371 adding 'funid/src/manage_input.py' 2023-07-07T09:02:25,373 adding 'funid/src/modeltest.py' 2023-07-07T09:02:25,374 adding 'funid/src/ncbi.py' 2023-07-07T09:02:25,376 adding 'funid/src/opt_generator.py' 2023-07-07T09:02:25,377 adding 'funid/src/patch.py' 2023-07-07T09:02:25,381 adding 'funid/src/reporter.py' 2023-07-07T09:02:25,383 adding 'funid/src/save.py' 2023-07-07T09:02:25,385 adding 'funid/src/search.py' 2023-07-07T09:02:25,387 adding 'funid/src/tool.py' 2023-07-07T09:02:25,389 adding 'funid/src/tree.py' 2023-07-07T09:02:25,393 adding 'funid/src/tree_interpretation.py' 2023-07-07T09:02:25,396 adding 'funid/src/tree_interpretation_pipe.py' 2023-07-07T09:02:25,398 adding 'funid/src/trim.py' 2023-07-07T09:02:25,403 adding 'funid/src/validate_option.py' 2023-07-07T09:02:25,404 adding 'funid/src/validation.py' 2023-07-07T09:02:25,407 adding 'funid/test_dataset/penicillium/Options.config' 2023-07-07T09:02:25,408 adding 'funid/test_dataset/penicillium/preset.yaml' 2023-07-07T09:02:25,446 adding 'funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2023-07-07T09:02:25,453 adding 'funid/test_dataset/penicillium/Query/Query.xlsx' 2023-07-07T09:02:25,460 adding 'FunID-0.3.12.dist-info/LICENSE' 2023-07-07T09:02:25,461 adding 'FunID-0.3.12.dist-info/METADATA' 2023-07-07T09:02:25,462 adding 'FunID-0.3.12.dist-info/WHEEL' 2023-07-07T09:02:25,463 adding 'FunID-0.3.12.dist-info/entry_points.txt' 2023-07-07T09:02:25,464 adding 'FunID-0.3.12.dist-info/top_level.txt' 2023-07-07T09:02:25,467 adding 'FunID-0.3.12.dist-info/RECORD' 2023-07-07T09:02:25,880 removing build/bdist.linux-armv7l/wheel 2023-07-07T09:02:26,048 Building wheel for funid (setup.py): finished with status 'done' 2023-07-07T09:02:26,554 Created wheel for funid: filename=FunID-0.3.12-py3-none-any.whl size=51527272 sha256=690331574875137d94139ddce24919dd1c94d97492b51b0f26b5d3b88f8c83d7 2023-07-07T09:02:26,555 Stored in directory: /tmp/pip-ephem-wheel-cache-zsamg91g/wheels/8c/87/52/ad4ab10d5deea8d638ff5626442285cde7e99e9a3f0069d28c 2023-07-07T09:02:26,587 Successfully built funid 2023-07-07T09:02:27,796 Removed build tracker: '/tmp/pip-build-tracker-5wjn_rwr'