2023-07-07T19:41:51,948 Created temporary directory: /tmp/pip-build-tracker-syu9p9hb 2023-07-07T19:41:51,951 Initialized build tracking at /tmp/pip-build-tracker-syu9p9hb 2023-07-07T19:41:51,952 Created build tracker: /tmp/pip-build-tracker-syu9p9hb 2023-07-07T19:41:51,952 Entered build tracker: /tmp/pip-build-tracker-syu9p9hb 2023-07-07T19:41:51,953 Created temporary directory: /tmp/pip-wheel-x4n9j4yc 2023-07-07T19:41:51,961 Created temporary directory: /tmp/pip-ephem-wheel-cache-jb1n4c6c 2023-07-07T19:41:52,020 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-07T19:41:52,028 2 location(s) to search for versions of seldompy: 2023-07-07T19:41:52,028 * https://pypi.org/simple/seldompy/ 2023-07-07T19:41:52,028 * https://www.piwheels.org/simple/seldompy/ 2023-07-07T19:41:52,029 Fetching project page and analyzing links: https://pypi.org/simple/seldompy/ 2023-07-07T19:41:52,030 Getting page https://pypi.org/simple/seldompy/ 2023-07-07T19:41:52,034 Found index url https://pypi.org/simple/ 2023-07-07T19:41:52,224 Fetched page https://pypi.org/simple/seldompy/ as application/vnd.pypi.simple.v1+json 2023-07-07T19:41:52,228 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/82/a4/a4d2bc232be3da37f11ff39092916785c7d4f5bba5e37b3ef9d6ae66c935/SELDOMpy-0.9.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-07-07T19:41:52,229 Found link https://files.pythonhosted.org/packages/fa/7c/0af10b0eabe8835525b5715684753814d16a210a3acb630525e7f7c9ee4b/SELDOMpy-0.9.6.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.6 2023-07-07T19:41:52,229 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/bf/47/43dfbbde395e0e6cc5a21d37c1a2e6876b9b086e288604bd0faded251c7d/SELDOMpy-0.9.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-07-07T19:41:52,230 Found link https://files.pythonhosted.org/packages/f0/00/14cf9107bffc20000d3e36edacd49564a9bd39733c7520ad4abcce0dde3e/SELDOMpy-0.9.7.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.7 2023-07-07T19:41:52,231 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/15/1e/e2ffb54d95eb04e2c11dd109754fe19e290c4a9ab4e2bf2a57159a503d92/SELDOMpy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-07-07T19:41:52,231 Found link https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.8 2023-07-07T19:41:52,232 Fetching project page and analyzing links: https://www.piwheels.org/simple/seldompy/ 2023-07-07T19:41:52,233 Getting page https://www.piwheels.org/simple/seldompy/ 2023-07-07T19:41:52,235 Found index url https://www.piwheels.org/simple/ 2023-07-07T19:41:52,463 Fetched page https://www.piwheels.org/simple/seldompy/ as text/html 2023-07-07T19:41:52,465 Skipping link: not a file: https://www.piwheels.org/simple/seldompy/ 2023-07-07T19:41:52,466 Skipping link: not a file: https://pypi.org/simple/seldompy/ 2023-07-07T19:41:52,499 Given no hashes to check 1 links for project 'seldompy': discarding no candidates 2023-07-07T19:41:52,530 Collecting seldompy==0.9.8 2023-07-07T19:41:52,534 Created temporary directory: /tmp/pip-unpack-88eg137o 2023-07-07T19:41:52,721 Downloading SELDOMpy-0.9.8.tar.gz (260 kB) 2023-07-07T19:41:53,428 Added seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz to build tracker '/tmp/pip-build-tracker-syu9p9hb' 2023-07-07T19:41:53,433 Running setup.py (path:/tmp/pip-wheel-x4n9j4yc/seldompy_a7f4726600054e02abcf553d6fb8a721/setup.py) egg_info for package seldompy 2023-07-07T19:41:53,434 Created temporary directory: /tmp/pip-pip-egg-info-zwyawhtm 2023-07-07T19:41:53,435 Preparing metadata (setup.py): started 2023-07-07T19:41:53,437 Running command python setup.py egg_info 2023-07-07T19:41:55,574 running egg_info 2023-07-07T19:41:55,577 creating /tmp/pip-pip-egg-info-zwyawhtm/SELDOMpy.egg-info 2023-07-07T19:41:55,642 writing /tmp/pip-pip-egg-info-zwyawhtm/SELDOMpy.egg-info/PKG-INFO 2023-07-07T19:41:55,647 writing dependency_links to /tmp/pip-pip-egg-info-zwyawhtm/SELDOMpy.egg-info/dependency_links.txt 2023-07-07T19:41:55,651 writing requirements to /tmp/pip-pip-egg-info-zwyawhtm/SELDOMpy.egg-info/requires.txt 2023-07-07T19:41:55,653 writing top-level names to /tmp/pip-pip-egg-info-zwyawhtm/SELDOMpy.egg-info/top_level.txt 2023-07-07T19:41:55,656 writing manifest file '/tmp/pip-pip-egg-info-zwyawhtm/SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:41:56,460 reading manifest file '/tmp/pip-pip-egg-info-zwyawhtm/SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:41:56,463 reading manifest template 'MANIFEST.in' 2023-07-07T19:41:56,482 adding license file 'LICENSE.txt' 2023-07-07T19:41:56,497 writing manifest file '/tmp/pip-pip-egg-info-zwyawhtm/SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:41:56,499 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T19:41:56,500 !! 2023-07-07T19:41:56,501 ******************************************************************************** 2023-07-07T19:41:56,501 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T19:41:56,501 versions. Please use the underscore name 'description_file' instead. 2023-07-07T19:41:56,502 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T19:41:56,503 or your builds will no longer be supported. 2023-07-07T19:41:56,504 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T19:41:56,504 ******************************************************************************** 2023-07-07T19:41:56,505 !! 2023-07-07T19:41:56,506 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T19:41:56,682 Preparing metadata (setup.py): finished with status 'done' 2023-07-07T19:41:56,695 Source in /tmp/pip-wheel-x4n9j4yc/seldompy_a7f4726600054e02abcf553d6fb8a721 has version 0.9.8, which satisfies requirement seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz 2023-07-07T19:41:56,697 Removed seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz from build tracker '/tmp/pip-build-tracker-syu9p9hb' 2023-07-07T19:41:56,708 Created temporary directory: /tmp/pip-unpack-coi7yg7y 2023-07-07T19:41:56,709 Building wheels for collected packages: seldompy 2023-07-07T19:41:56,717 Created temporary directory: /tmp/pip-wheel-6nh0k0_h 2023-07-07T19:41:56,718 Building wheel for seldompy (setup.py): started 2023-07-07T19:41:56,720 Destination directory: /tmp/pip-wheel-6nh0k0_h 2023-07-07T19:41:56,720 Running command python setup.py bdist_wheel 2023-07-07T19:41:58,431 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T19:41:58,432 !! 2023-07-07T19:41:58,433 ******************************************************************************** 2023-07-07T19:41:58,434 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T19:41:58,434 versions. Please use the underscore name 'description_file' instead. 2023-07-07T19:41:58,435 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T19:41:58,435 or your builds will no longer be supported. 2023-07-07T19:41:58,436 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T19:41:58,436 ******************************************************************************** 2023-07-07T19:41:58,437 !! 2023-07-07T19:41:58,437 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T19:41:58,847 running bdist_wheel 2023-07-07T19:41:59,651 running build 2023-07-07T19:41:59,651 running build_py 2023-07-07T19:41:59,723 creating build 2023-07-07T19:41:59,724 creating build/lib.linux-armv7l-cpython-37 2023-07-07T19:41:59,725 creating build/lib.linux-armv7l-cpython-37/SELDOMpy 2023-07-07T19:41:59,727 copying SELDOMpy/__init__.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy 2023-07-07T19:41:59,732 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:41:59,734 copying SELDOMpy/src/__init__.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:41:59,737 running egg_info 2023-07-07T19:41:59,884 writing SELDOMpy.egg-info/PKG-INFO 2023-07-07T19:41:59,889 writing dependency_links to SELDOMpy.egg-info/dependency_links.txt 2023-07-07T19:41:59,893 writing requirements to SELDOMpy.egg-info/requires.txt 2023-07-07T19:41:59,895 writing top-level names to SELDOMpy.egg-info/top_level.txt 2023-07-07T19:41:59,982 reading manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:41:59,998 reading manifest template 'MANIFEST.in' 2023-07-07T19:42:00,011 adding license file 'LICENSE.txt' 2023-07-07T19:42:00,032 writing manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:42:00,038 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.examples.MAPK' is absent from the `packages` configuration. 2023-07-07T19:42:00,038 !! 2023-07-07T19:42:00,039 ******************************************************************************** 2023-07-07T19:42:00,039 ############################ 2023-07-07T19:42:00,039 # Package would be ignored # 2023-07-07T19:42:00,040 ############################ 2023-07-07T19:42:00,040 Python recognizes 'SELDOMpy.examples.MAPK' as an importable package[^1], 2023-07-07T19:42:00,040 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:42:00,041 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:42:00,041 package, please make sure that 'SELDOMpy.examples.MAPK' is explicitly added 2023-07-07T19:42:00,042 to the `packages` configuration field. 2023-07-07T19:42:00,042 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:42:00,042 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:42:00,043 instead of `find_packages(...)`/`find:`). 2023-07-07T19:42:00,043 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:42:00,044 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:42:00,044 If you don't want 'SELDOMpy.examples.MAPK' to be distributed and are 2023-07-07T19:42:00,045 already explicitly excluding 'SELDOMpy.examples.MAPK' via 2023-07-07T19:42:00,045 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:42:00,045 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:42:00,046 combination with a more fine grained `package-data` configuration. 2023-07-07T19:42:00,046 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:42:00,047 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:42:00,048 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:42:00,048 even if it does not contain any `.py` files. 2023-07-07T19:42:00,048 On the other hand, currently there is no concept of package data 2023-07-07T19:42:00,049 directory, all directories are treated like packages. 2023-07-07T19:42:00,049 ******************************************************************************** 2023-07-07T19:42:00,050 !! 2023-07-07T19:42:00,050 check.warn(importable) 2023-07-07T19:42:00,050 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.examples.SP' is absent from the `packages` configuration. 2023-07-07T19:42:00,051 !! 2023-07-07T19:42:00,051 ******************************************************************************** 2023-07-07T19:42:00,052 ############################ 2023-07-07T19:42:00,052 # Package would be ignored # 2023-07-07T19:42:00,052 ############################ 2023-07-07T19:42:00,052 Python recognizes 'SELDOMpy.examples.SP' as an importable package[^1], 2023-07-07T19:42:00,053 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:42:00,053 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:42:00,054 package, please make sure that 'SELDOMpy.examples.SP' is explicitly added 2023-07-07T19:42:00,054 to the `packages` configuration field. 2023-07-07T19:42:00,055 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:42:00,055 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:42:00,055 instead of `find_packages(...)`/`find:`). 2023-07-07T19:42:00,056 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:42:00,056 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:42:00,057 If you don't want 'SELDOMpy.examples.SP' to be distributed and are 2023-07-07T19:42:00,057 already explicitly excluding 'SELDOMpy.examples.SP' via 2023-07-07T19:42:00,058 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:42:00,058 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:42:00,058 combination with a more fine grained `package-data` configuration. 2023-07-07T19:42:00,059 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:42:00,059 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:42:00,060 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:42:00,060 even if it does not contain any `.py` files. 2023-07-07T19:42:00,061 On the other hand, currently there is no concept of package data 2023-07-07T19:42:00,061 directory, all directories are treated like packages. 2023-07-07T19:42:00,061 ******************************************************************************** 2023-07-07T19:42:00,062 !! 2023-07-07T19:42:00,062 check.warn(importable) 2023-07-07T19:42:00,062 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.functions' is absent from the `packages` configuration. 2023-07-07T19:42:00,063 !! 2023-07-07T19:42:00,063 ******************************************************************************** 2023-07-07T19:42:00,063 ############################ 2023-07-07T19:42:00,064 # Package would be ignored # 2023-07-07T19:42:00,064 ############################ 2023-07-07T19:42:00,064 Python recognizes 'SELDOMpy.functions' as an importable package[^1], 2023-07-07T19:42:00,065 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:42:00,065 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:42:00,065 package, please make sure that 'SELDOMpy.functions' is explicitly added 2023-07-07T19:42:00,066 to the `packages` configuration field. 2023-07-07T19:42:00,066 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:42:00,067 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:42:00,067 instead of `find_packages(...)`/`find:`). 2023-07-07T19:42:00,068 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:42:00,068 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:42:00,069 If you don't want 'SELDOMpy.functions' to be distributed and are 2023-07-07T19:42:00,069 already explicitly excluding 'SELDOMpy.functions' via 2023-07-07T19:42:00,069 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:42:00,070 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:42:00,070 combination with a more fine grained `package-data` configuration. 2023-07-07T19:42:00,070 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:42:00,071 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:42:00,072 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:42:00,072 even if it does not contain any `.py` files. 2023-07-07T19:42:00,072 On the other hand, currently there is no concept of package data 2023-07-07T19:42:00,073 directory, all directories are treated like packages. 2023-07-07T19:42:00,073 ******************************************************************************** 2023-07-07T19:42:00,073 !! 2023-07-07T19:42:00,074 check.warn(importable) 2023-07-07T19:42:00,074 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_amigo' is absent from the `packages` configuration. 2023-07-07T19:42:00,074 !! 2023-07-07T19:42:00,075 ******************************************************************************** 2023-07-07T19:42:00,075 ############################ 2023-07-07T19:42:00,076 # Package would be ignored # 2023-07-07T19:42:00,076 ############################ 2023-07-07T19:42:00,076 Python recognizes 'SELDOMpy.src.include.include_amigo' as an importable package[^1], 2023-07-07T19:42:00,076 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:42:00,077 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:42:00,077 package, please make sure that 'SELDOMpy.src.include.include_amigo' is explicitly added 2023-07-07T19:42:00,078 to the `packages` configuration field. 2023-07-07T19:42:00,078 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:42:00,079 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:42:00,079 instead of `find_packages(...)`/`find:`). 2023-07-07T19:42:00,080 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:42:00,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:42:00,081 If you don't want 'SELDOMpy.src.include.include_amigo' to be distributed and are 2023-07-07T19:42:00,081 already explicitly excluding 'SELDOMpy.src.include.include_amigo' via 2023-07-07T19:42:00,081 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:42:00,082 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:42:00,082 combination with a more fine grained `package-data` configuration. 2023-07-07T19:42:00,083 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:42:00,083 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:42:00,084 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:42:00,085 even if it does not contain any `.py` files. 2023-07-07T19:42:00,085 On the other hand, currently there is no concept of package data 2023-07-07T19:42:00,086 directory, all directories are treated like packages. 2023-07-07T19:42:00,086 ******************************************************************************** 2023-07-07T19:42:00,087 !! 2023-07-07T19:42:00,087 check.warn(importable) 2023-07-07T19:42:00,087 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.cvodes' is absent from the `packages` configuration. 2023-07-07T19:42:00,088 !! 2023-07-07T19:42:00,088 ******************************************************************************** 2023-07-07T19:42:00,089 ############################ 2023-07-07T19:42:00,089 # Package would be ignored # 2023-07-07T19:42:00,089 ############################ 2023-07-07T19:42:00,089 Python recognizes 'SELDOMpy.src.include.include_cvodes.cvodes' as an importable package[^1], 2023-07-07T19:42:00,090 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:42:00,090 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:42:00,091 package, please make sure that 'SELDOMpy.src.include.include_cvodes.cvodes' is explicitly added 2023-07-07T19:42:00,091 to the `packages` configuration field. 2023-07-07T19:42:00,092 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:42:00,092 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:42:00,092 instead of `find_packages(...)`/`find:`). 2023-07-07T19:42:00,093 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:42:00,094 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:42:00,094 If you don't want 'SELDOMpy.src.include.include_cvodes.cvodes' to be distributed and are 2023-07-07T19:42:00,094 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.cvodes' via 2023-07-07T19:42:00,095 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:42:00,095 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:42:00,095 combination with a more fine grained `package-data` configuration. 2023-07-07T19:42:00,096 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:42:00,097 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:42:00,098 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:42:00,098 even if it does not contain any `.py` files. 2023-07-07T19:42:00,098 On the other hand, currently there is no concept of package data 2023-07-07T19:42:00,099 directory, all directories are treated like packages. 2023-07-07T19:42:00,099 ******************************************************************************** 2023-07-07T19:42:00,100 !! 2023-07-07T19:42:00,100 check.warn(importable) 2023-07-07T19:42:00,101 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.nvector' is absent from the `packages` configuration. 2023-07-07T19:42:00,102 !! 2023-07-07T19:42:00,102 ******************************************************************************** 2023-07-07T19:42:00,103 ############################ 2023-07-07T19:42:00,103 # Package would be ignored # 2023-07-07T19:42:00,103 ############################ 2023-07-07T19:42:00,103 Python recognizes 'SELDOMpy.src.include.include_cvodes.nvector' as an importable package[^1], 2023-07-07T19:42:00,104 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:42:00,105 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:42:00,105 package, please make sure that 'SELDOMpy.src.include.include_cvodes.nvector' is explicitly added 2023-07-07T19:42:00,105 to the `packages` configuration field. 2023-07-07T19:42:00,106 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:42:00,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:42:00,107 instead of `find_packages(...)`/`find:`). 2023-07-07T19:42:00,108 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:42:00,108 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:42:00,109 If you don't want 'SELDOMpy.src.include.include_cvodes.nvector' to be distributed and are 2023-07-07T19:42:00,109 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.nvector' via 2023-07-07T19:42:00,110 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:42:00,110 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:42:00,110 combination with a more fine grained `package-data` configuration. 2023-07-07T19:42:00,112 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:42:00,112 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:42:00,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:42:00,114 even if it does not contain any `.py` files. 2023-07-07T19:42:00,114 On the other hand, currently there is no concept of package data 2023-07-07T19:42:00,114 directory, all directories are treated like packages. 2023-07-07T19:42:00,115 ******************************************************************************** 2023-07-07T19:42:00,115 !! 2023-07-07T19:42:00,115 check.warn(importable) 2023-07-07T19:42:00,116 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.sundials' is absent from the `packages` configuration. 2023-07-07T19:42:00,116 !! 2023-07-07T19:42:00,117 ******************************************************************************** 2023-07-07T19:42:00,117 ############################ 2023-07-07T19:42:00,118 # Package would be ignored # 2023-07-07T19:42:00,118 ############################ 2023-07-07T19:42:00,118 Python recognizes 'SELDOMpy.src.include.include_cvodes.sundials' as an importable package[^1], 2023-07-07T19:42:00,119 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:42:00,119 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:42:00,120 package, please make sure that 'SELDOMpy.src.include.include_cvodes.sundials' is explicitly added 2023-07-07T19:42:00,120 to the `packages` configuration field. 2023-07-07T19:42:00,121 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:42:00,121 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:42:00,121 instead of `find_packages(...)`/`find:`). 2023-07-07T19:42:00,122 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:42:00,123 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:42:00,124 If you don't want 'SELDOMpy.src.include.include_cvodes.sundials' to be distributed and are 2023-07-07T19:42:00,124 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.sundials' via 2023-07-07T19:42:00,124 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:42:00,125 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:42:00,125 combination with a more fine grained `package-data` configuration. 2023-07-07T19:42:00,126 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:42:00,127 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:42:00,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:42:00,128 even if it does not contain any `.py` files. 2023-07-07T19:42:00,128 On the other hand, currently there is no concept of package data 2023-07-07T19:42:00,129 directory, all directories are treated like packages. 2023-07-07T19:42:00,129 ******************************************************************************** 2023-07-07T19:42:00,130 !! 2023-07-07T19:42:00,130 check.warn(importable) 2023-07-07T19:42:00,130 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/examples 2023-07-07T19:42:00,131 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/MAPK 2023-07-07T19:42:00,131 copying SELDOMpy/examples/MAPK/MAPK.xlsx -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/MAPK 2023-07-07T19:42:00,132 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/MAPK 2023-07-07T19:42:00,132 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/MAPK 2023-07-07T19:42:00,132 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/SP 2023-07-07T19:42:00,133 copying SELDOMpy/examples/SP/SP.xlsx -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/SP 2023-07-07T19:42:00,133 copying SELDOMpy/examples/SP/SP_training_and_reduce.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/SP 2023-07-07T19:42:00,133 copying SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/SP 2023-07-07T19:42:00,134 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,134 copying SELDOMpy/functions/buildmim.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,134 copying SELDOMpy/functions/extras.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,135 copying SELDOMpy/functions/gen_exps.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,135 copying SELDOMpy/functions/getLBODEmodel.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,135 copying SELDOMpy/functions/getRandomLBODEmodel.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,138 copying SELDOMpy/functions/optimization.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,142 copying SELDOMpy/functions/plot_results.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,146 copying SELDOMpy/functions/reduce_fun.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,150 copying SELDOMpy/functions/simulate_logic_based_ode.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,154 copying SELDOMpy/functions/simulate_logic_based_ode_obs.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-07-07T19:42:00,158 copying SELDOMpy/src/AMIGO_model.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,163 copying SELDOMpy/src/AMIGO_model_stats.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,167 copying SELDOMpy/src/AMIGO_problem.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,171 copying SELDOMpy/src/CNOStructure.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,175 copying SELDOMpy/src/anODEModel.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,179 copying SELDOMpy/src/cvodea.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,187 copying SELDOMpy/src/cvodea_io.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,193 copying SELDOMpy/src/cvodes.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,210 copying SELDOMpy/src/cvodes_band.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,215 copying SELDOMpy/src/cvodes_bandpre.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,220 copying SELDOMpy/src/cvodes_bandpre_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,224 copying SELDOMpy/src/cvodes_bbdpre.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,230 copying SELDOMpy/src/cvodes_bbdpre_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,233 copying SELDOMpy/src/cvodes_dense.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,239 copying SELDOMpy/src/cvodes_diag.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,243 copying SELDOMpy/src/cvodes_diag_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,247 copying SELDOMpy/src/cvodes_direct.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,252 copying SELDOMpy/src/cvodes_direct_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,257 copying SELDOMpy/src/cvodes_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,263 copying SELDOMpy/src/cvodes_io.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,270 copying SELDOMpy/src/cvodes_spbcgs.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,274 copying SELDOMpy/src/cvodes_spgmr.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,279 copying SELDOMpy/src/cvodes_spils.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,285 copying SELDOMpy/src/cvodes_spils_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,290 copying SELDOMpy/src/cvodes_sptfqmr.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,295 copying SELDOMpy/src/decimal2binary.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,299 copying SELDOMpy/src/dhc.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,303 copying SELDOMpy/src/findStates.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,307 copying SELDOMpy/src/fnvector_serial.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,310 copying SELDOMpy/src/fnvector_serial.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,314 copying SELDOMpy/src/getAdjacencyMatrix.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,318 copying SELDOMpy/src/getNumBits.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,322 copying SELDOMpy/src/getNumInputs.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,326 copying SELDOMpy/src/getStateIndex.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,329 copying SELDOMpy/src/getTruthTables.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,333 copying SELDOMpy/src/get_count_bits.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,337 copying SELDOMpy/src/get_input_index.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,341 copying SELDOMpy/src/get_support_truth_tables.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,345 copying SELDOMpy/src/get_truth_tables_index.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,348 copying SELDOMpy/src/hill_function.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,352 copying SELDOMpy/src/linear_transfer_function.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,356 copying SELDOMpy/src/normHill.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,360 copying SELDOMpy/src/nvector_serial.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,365 copying SELDOMpy/src/printAdjMat.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,369 copying SELDOMpy/src/printInterMat.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,373 copying SELDOMpy/src/printNminiTerms.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,377 copying SELDOMpy/src/printTruthTables.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,380 copying SELDOMpy/src/sim_logic_ode.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,385 copying SELDOMpy/src/simulate_amigo_model.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,390 copying SELDOMpy/src/sundials_band.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,394 copying SELDOMpy/src/sundials_dense.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,399 copying SELDOMpy/src/sundials_direct.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,403 copying SELDOMpy/src/sundials_iterative.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,408 copying SELDOMpy/src/sundials_math.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,412 copying SELDOMpy/src/sundials_nvector.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,417 copying SELDOMpy/src/sundials_spbcgs.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,422 copying SELDOMpy/src/sundials_spgmr.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,427 copying SELDOMpy/src/sundials_sptfqmr.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,432 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include 2023-07-07T19:42:00,433 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,435 copying SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,439 copying SELDOMpy/src/include/include_amigo/AMIGO_model.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,443 copying SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,447 copying SELDOMpy/src/include/include_amigo/AMIGO_problem.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,451 copying SELDOMpy/src/include/include_amigo/amigoJAC.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,455 copying SELDOMpy/src/include/include_amigo/amigoRHS.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,459 copying SELDOMpy/src/include/include_amigo/amigoSensRHS.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,462 copying SELDOMpy/src/include/include_amigo/simulate_amigo_model.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-07-07T19:42:00,466 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes 2023-07-07T19:42:00,467 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,470 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,479 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,483 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,488 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,494 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,498 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,503 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,508 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,512 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,517 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,521 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,526 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:42:00,531 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/nvector 2023-07-07T19:42:00,532 copying SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/nvector 2023-07-07T19:42:00,537 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,539 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,544 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,548 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,553 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,558 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,562 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,568 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,573 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,578 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,583 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,588 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,593 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,598 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:42:00,605 running build_ext 2023-07-07T19:42:00,619 building 'hello' extension 2023-07-07T19:42:00,624 creating build/temp.linux-armv7l-cpython-37 2023-07-07T19:42:00,624 creating build/temp.linux-armv7l-cpython-37/SELDOMpy 2023-07-07T19:42:00,626 creating build/temp.linux-armv7l-cpython-37/SELDOMpy/src 2023-07-07T19:42:00,633 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/AMIGO_model.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/AMIGO_model.o 2023-07-07T19:42:00,974 SELDOMpy/src/AMIGO_model.c: In function ‘simulate_AMIGO_model’: 2023-07-07T19:42:00,974 SELDOMpy/src/AMIGO_model.c:225:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-07-07T19:42:00,975 }; 2023-07-07T19:42:00,975 ^ 2023-07-07T19:42:01,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/AMIGO_model_stats.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/AMIGO_model_stats.o 2023-07-07T19:42:02,033 SELDOMpy/src/AMIGO_model_stats.c:1:9: warning: #pragma once in main file 2023-07-07T19:42:02,033 #pragma once 2023-07-07T19:42:02,034 ^~~~ 2023-07-07T19:42:02,210 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/AMIGO_problem.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/AMIGO_problem.o 2023-07-07T19:42:02,507 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LSQ’: 2023-07-07T19:42:02,508 SELDOMpy/src/AMIGO_problem.c:132: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] 2023-07-07T19:42:02,508 #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-07-07T19:42:02,509 SELDOMpy/src/AMIGO_problem.c:134: warning: ignoring #pragma omp for [-Wunknown-pragmas] 2023-07-07T19:42:02,510 #pragma omp for schedule(dynamic,1) private(i) 2023-07-07T19:42:02,513 SELDOMpy/src/AMIGO_problem.c:127:6: warning: unused variable ‘counter’ [-Wunused-variable] 2023-07-07T19:42:02,513 int counter=0; 2023-07-07T19:42:02,514 ^~~~~~~ 2023-07-07T19:42:02,514 SELDOMpy/src/AMIGO_problem.c:126:15: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-07-07T19:42:02,514 int i, j, k, n_exps, n_times, n_obs; 2023-07-07T19:42:02,515 ^~~~~~ 2023-07-07T19:42:02,516 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LLK’: 2023-07-07T19:42:02,516 SELDOMpy/src/AMIGO_problem.c:185: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] 2023-07-07T19:42:02,517 #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-07-07T19:42:02,517 SELDOMpy/src/AMIGO_problem.c:187: warning: ignoring #pragma omp for [-Wunknown-pragmas] 2023-07-07T19:42:02,518 #pragma omp for schedule(dynamic,1) private(i,flag) 2023-07-07T19:42:02,520 SELDOMpy/src/AMIGO_problem.c:182:6: warning: unused variable ‘counter’ [-Wunused-variable] 2023-07-07T19:42:02,521 int counter=0; 2023-07-07T19:42:02,521 ^~~~~~~ 2023-07-07T19:42:02,522 SELDOMpy/src/AMIGO_problem.c:181:39: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-07-07T19:42:02,522 int i, j, k, n_exps, n_times, n_obs,flag; 2023-07-07T19:42:02,522 ^~~~ 2023-07-07T19:42:02,523 SELDOMpy/src/AMIGO_problem.c:181:16: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-07-07T19:42:02,523 int i, j, k, n_exps, n_times, n_obs,flag; 2023-07-07T19:42:02,523 ^~~~~~ 2023-07-07T19:42:03,341 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/anODEModel.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/anODEModel.o 2023-07-07T19:42:03,632 SELDOMpy/src/anODEModel.c: In function ‘amigoRHS’: 2023-07-07T19:42:03,632 SELDOMpy/src/anODEModel.c:23:9: warning: unused variable ‘countBin’ [-Wunused-variable] 2023-07-07T19:42:03,633 int countBin=0; 2023-07-07T19:42:03,634 ^~~~~~~~ 2023-07-07T19:42:03,634 SELDOMpy/src/anODEModel.c: In function ‘amigo_Y_at_tcon’: 2023-07-07T19:42:03,635 SELDOMpy/src/anODEModel.c:118:18: warning: unused variable ‘amigo_model’ [-Wunused-variable] 2023-07-07T19:42:03,635 AMIGO_model* amigo_model=(AMIGO_model*)data; 2023-07-07T19:42:03,636 ^~~~~~~~~~~ 2023-07-07T19:42:04,010 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/cvodea.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/cvodea.o 2023-07-07T19:42:04,339 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteStorePnt’: 2023-07-07T19:42:04,339 SELDOMpy/src/cvodea.c:2461:11: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 2023-07-07T19:42:04,340 int is, retval; 2023-07-07T19:42:04,340 ^~~~~~ 2023-07-07T19:42:04,363 SELDOMpy/src/cvodea.c: In function ‘CVArhsQ’: 2023-07-07T19:42:04,364 SELDOMpy/src/cvodea.c:2957:7: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-07-07T19:42:04,365 int flag, retval; 2023-07-07T19:42:04,365 ^~~~ 2023-07-07T19:42:06,037 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteGetY’: 2023-07-07T19:42:06,038 SELDOMpy/src/cvodea.c:2523:19: warning: ‘ySd0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-07T19:42:06,038 N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-07-07T19:42:06,038 ^~~~ 2023-07-07T19:42:06,039 SELDOMpy/src/cvodea.c:2523:13: warning: ‘yS0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-07T19:42:06,039 N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-07-07T19:42:06,039 ^~~ 2023-07-07T19:42:08,216 SELDOMpy/src/cvodea.c: In function ‘CVodeB’: 2023-07-07T19:42:08,217 SELDOMpy/src/cvodea.c:1263:13: warning: ‘flag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-07T19:42:08,217 int sign, flag; 2023-07-07T19:42:08,218 ^~~~ 2023-07-07T19:42:09,252 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/cvodea_io.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/cvodea_io.o 2023-07-07T19:42:10,513 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/cvodes.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/cvodes.o 2023-07-07T19:42:10,908 SELDOMpy/src/cvodes.c: In function ‘cvHin’: 2023-07-07T19:42:10,910 SELDOMpy/src/cvodes.c:4328:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2023-07-07T19:42:10,911 if (count1 <= 2) 2023-07-07T19:42:10,911 ^~ 2023-07-07T19:42:10,912 SELDOMpy/src/cvodes.c:4330:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2023-07-07T19:42:10,913 if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); 2023-07-07T19:42:10,913 ^~ 2023-07-07T19:42:11,480 SELDOMpy/src/cvodes.c: In function ‘cvQuadSensRhs1InternalDQ’: 2023-07-07T19:42:11,484 SELDOMpy/src/cvodes.c:8850:20: warning: variable ‘rDeltap’ set but not used [-Wunused-but-set-variable] 2023-07-07T19:42:11,484 realtype Deltap, rDeltap; 2023-07-07T19:42:11,485 ^~~~~~~ 2023-07-07T19:42:11,486 SELDOMpy/src/cvodes.c: In function ‘cvProcessError’: 2023-07-07T19:42:11,488 SELDOMpy/src/cvodes.c:8961:21: error: format not a string literal and no format arguments [-Werror=format-security] 2023-07-07T19:42:11,489 fprintf(stderr, msg); 2023-07-07T19:42:11,489 ^~~ 2023-07-07T19:42:24,921 cc1: some warnings being treated as errors 2023-07-07T19:42:24,945 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-07-07T19:42:25,174 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-07-07T19:42:25,218 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-07-07T19:42:25,218 exec(compile('"'"''"'"''"'"' 2023-07-07T19:42:25,218 # This is -- a caller that pip uses to run setup.py 2023-07-07T19:42:25,218 # 2023-07-07T19:42:25,218 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-07-07T19:42:25,218 # import from `distutils.core` to work with newer packaging standards. 2023-07-07T19:42:25,218 # - It provides a clear error message when setuptools is not installed. 2023-07-07T19:42:25,218 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-07-07T19:42:25,218 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-07-07T19:42:25,218 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-07-07T19:42:25,218 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-07-07T19:42:25,218 import os, sys, tokenize 2023-07-07T19:42:25,218 2023-07-07T19:42:25,218 try: 2023-07-07T19:42:25,218 import setuptools 2023-07-07T19:42:25,218 except ImportError as error: 2023-07-07T19:42:25,218 print( 2023-07-07T19:42:25,218 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-07-07T19:42:25,218 "the build environment.", 2023-07-07T19:42:25,218 file=sys.stderr, 2023-07-07T19:42:25,218 ) 2023-07-07T19:42:25,218 sys.exit(1) 2023-07-07T19:42:25,218 2023-07-07T19:42:25,218 __file__ = %r 2023-07-07T19:42:25,218 sys.argv[0] = __file__ 2023-07-07T19:42:25,218 2023-07-07T19:42:25,218 if os.path.exists(__file__): 2023-07-07T19:42:25,218 filename = __file__ 2023-07-07T19:42:25,218 with tokenize.open(__file__) as f: 2023-07-07T19:42:25,218 setup_py_code = f.read() 2023-07-07T19:42:25,218 else: 2023-07-07T19:42:25,218 filename = "" 2023-07-07T19:42:25,218 setup_py_code = "from setuptools import setup; setup()" 2023-07-07T19:42:25,218 2023-07-07T19:42:25,218 exec(compile(setup_py_code, filename, "exec")) 2023-07-07T19:42:25,218 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-x4n9j4yc/seldompy_a7f4726600054e02abcf553d6fb8a721/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-6nh0k0_h[/] 2023-07-07T19:42:25,219 [bold magenta]cwd[/]: /tmp/pip-wheel-x4n9j4yc/seldompy_a7f4726600054e02abcf553d6fb8a721/ 2023-07-07T19:42:25,219 Building wheel for seldompy (setup.py): finished with status 'error' 2023-07-07T19:42:25,221 ERROR: Failed building wheel for seldompy 2023-07-07T19:42:25,224 Running setup.py clean for seldompy 2023-07-07T19:42:25,226 Running command python setup.py clean 2023-07-07T19:42:26,995 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T19:42:26,997 !! 2023-07-07T19:42:26,997 ******************************************************************************** 2023-07-07T19:42:26,998 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T19:42:26,998 versions. Please use the underscore name 'description_file' instead. 2023-07-07T19:42:26,999 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T19:42:26,999 or your builds will no longer be supported. 2023-07-07T19:42:27,000 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T19:42:27,000 ******************************************************************************** 2023-07-07T19:42:27,001 !! 2023-07-07T19:42:27,001 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T19:42:27,326 running clean 2023-07-07T19:42:27,457 removing 'build/temp.linux-armv7l-cpython-37' (and everything under it) 2023-07-07T19:42:27,465 removing 'build/lib.linux-armv7l-cpython-37' (and everything under it) 2023-07-07T19:42:27,542 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-07-07T19:42:27,542 'build/scripts-3.7' does not exist -- can't clean it 2023-07-07T19:42:27,543 removing 'build' 2023-07-07T19:42:27,714 Failed to build seldompy 2023-07-07T19:42:27,718 ERROR: Failed to build one or more wheels 2023-07-07T19:42:27,721 Exception information: 2023-07-07T19:42:27,721 Traceback (most recent call last): 2023-07-07T19:42:27,721 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-07-07T19:42:27,721 status = run_func(*args) 2023-07-07T19:42:27,721 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-07-07T19:42:27,721 return func(self, options, args) 2023-07-07T19:42:27,721 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-07-07T19:42:27,721 raise CommandError("Failed to build one or more wheels") 2023-07-07T19:42:27,721 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-07-07T19:42:27,727 Removed build tracker: '/tmp/pip-build-tracker-syu9p9hb'