2023-07-07T19:48:14,714 Created temporary directory: /tmp/pip-build-tracker-kykvnli4 2023-07-07T19:48:14,715 Initialized build tracking at /tmp/pip-build-tracker-kykvnli4 2023-07-07T19:48:14,716 Created build tracker: /tmp/pip-build-tracker-kykvnli4 2023-07-07T19:48:14,716 Entered build tracker: /tmp/pip-build-tracker-kykvnli4 2023-07-07T19:48:14,716 Created temporary directory: /tmp/pip-wheel-ka7b3xnl 2023-07-07T19:48:14,719 Created temporary directory: /tmp/pip-ephem-wheel-cache-kq4yuwzc 2023-07-07T19:48:14,742 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-07T19:48:14,746 2 location(s) to search for versions of seldompy: 2023-07-07T19:48:14,746 * https://pypi.org/simple/seldompy/ 2023-07-07T19:48:14,746 * https://www.piwheels.org/simple/seldompy/ 2023-07-07T19:48:14,746 Fetching project page and analyzing links: https://pypi.org/simple/seldompy/ 2023-07-07T19:48:14,747 Getting page https://pypi.org/simple/seldompy/ 2023-07-07T19:48:14,748 Found index url https://pypi.org/simple/ 2023-07-07T19:48:14,797 Fetched page https://pypi.org/simple/seldompy/ as application/vnd.pypi.simple.v1+json 2023-07-07T19:48:14,799 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/82/a4/a4d2bc232be3da37f11ff39092916785c7d4f5bba5e37b3ef9d6ae66c935/SELDOMpy-0.9.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-07-07T19:48:14,799 Found link https://files.pythonhosted.org/packages/fa/7c/0af10b0eabe8835525b5715684753814d16a210a3acb630525e7f7c9ee4b/SELDOMpy-0.9.6.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.6 2023-07-07T19:48:14,799 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/bf/47/43dfbbde395e0e6cc5a21d37c1a2e6876b9b086e288604bd0faded251c7d/SELDOMpy-0.9.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-07-07T19:48:14,800 Found link https://files.pythonhosted.org/packages/f0/00/14cf9107bffc20000d3e36edacd49564a9bd39733c7520ad4abcce0dde3e/SELDOMpy-0.9.7.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.7 2023-07-07T19:48:14,800 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/15/1e/e2ffb54d95eb04e2c11dd109754fe19e290c4a9ab4e2bf2a57159a503d92/SELDOMpy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-07-07T19:48:14,800 Found link https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.8 2023-07-07T19:48:14,801 Fetching project page and analyzing links: https://www.piwheels.org/simple/seldompy/ 2023-07-07T19:48:14,801 Getting page https://www.piwheels.org/simple/seldompy/ 2023-07-07T19:48:14,802 Found index url https://www.piwheels.org/simple/ 2023-07-07T19:48:14,964 Fetched page https://www.piwheels.org/simple/seldompy/ as text/html 2023-07-07T19:48:14,965 Skipping link: not a file: https://www.piwheels.org/simple/seldompy/ 2023-07-07T19:48:14,966 Skipping link: not a file: https://pypi.org/simple/seldompy/ 2023-07-07T19:48:14,983 Given no hashes to check 1 links for project 'seldompy': discarding no candidates 2023-07-07T19:48:15,000 Collecting seldompy==0.9.8 2023-07-07T19:48:15,002 Created temporary directory: /tmp/pip-unpack-xhrbruju 2023-07-07T19:48:15,054 Downloading SELDOMpy-0.9.8.tar.gz (260 kB) 2023-07-07T19:48:15,370 Added seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz to build tracker '/tmp/pip-build-tracker-kykvnli4' 2023-07-07T19:48:15,372 Running setup.py (path:/tmp/pip-wheel-ka7b3xnl/seldompy_96b23082d9ce498786e2aa57f5bde016/setup.py) egg_info for package seldompy 2023-07-07T19:48:15,373 Created temporary directory: /tmp/pip-pip-egg-info-o__4u41o 2023-07-07T19:48:15,373 Preparing metadata (setup.py): started 2023-07-07T19:48:15,374 Running command python setup.py egg_info 2023-07-07T19:48:16,385 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T19:48:16,385 !! 2023-07-07T19:48:16,386 ******************************************************************************** 2023-07-07T19:48:16,386 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T19:48:16,386 versions. Please use the underscore name 'description_file' instead. 2023-07-07T19:48:16,386 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T19:48:16,386 or your builds will no longer be supported. 2023-07-07T19:48:16,387 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T19:48:16,387 ******************************************************************************** 2023-07-07T19:48:16,387 !! 2023-07-07T19:48:16,387 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T19:48:16,562 running egg_info 2023-07-07T19:48:16,564 creating /tmp/pip-pip-egg-info-o__4u41o/SELDOMpy.egg-info 2023-07-07T19:48:16,589 writing /tmp/pip-pip-egg-info-o__4u41o/SELDOMpy.egg-info/PKG-INFO 2023-07-07T19:48:16,591 writing dependency_links to /tmp/pip-pip-egg-info-o__4u41o/SELDOMpy.egg-info/dependency_links.txt 2023-07-07T19:48:16,593 writing requirements to /tmp/pip-pip-egg-info-o__4u41o/SELDOMpy.egg-info/requires.txt 2023-07-07T19:48:16,594 writing top-level names to /tmp/pip-pip-egg-info-o__4u41o/SELDOMpy.egg-info/top_level.txt 2023-07-07T19:48:16,596 writing manifest file '/tmp/pip-pip-egg-info-o__4u41o/SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:48:16,922 reading manifest file '/tmp/pip-pip-egg-info-o__4u41o/SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:48:16,924 reading manifest template 'MANIFEST.in' 2023-07-07T19:48:16,930 adding license file 'LICENSE.txt' 2023-07-07T19:48:16,936 writing manifest file '/tmp/pip-pip-egg-info-o__4u41o/SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:48:17,040 Preparing metadata (setup.py): finished with status 'done' 2023-07-07T19:48:17,045 Source in /tmp/pip-wheel-ka7b3xnl/seldompy_96b23082d9ce498786e2aa57f5bde016 has version 0.9.8, which satisfies requirement seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz 2023-07-07T19:48:17,046 Removed seldompy==0.9.8 from https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz from build tracker '/tmp/pip-build-tracker-kykvnli4' 2023-07-07T19:48:17,050 Created temporary directory: /tmp/pip-unpack-tipne0pt 2023-07-07T19:48:17,051 Building wheels for collected packages: seldompy 2023-07-07T19:48:17,055 Created temporary directory: /tmp/pip-wheel-hhp2oyjm 2023-07-07T19:48:17,055 Building wheel for seldompy (setup.py): started 2023-07-07T19:48:17,056 Destination directory: /tmp/pip-wheel-hhp2oyjm 2023-07-07T19:48:17,056 Running command python setup.py bdist_wheel 2023-07-07T19:48:17,725 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T19:48:17,725 !! 2023-07-07T19:48:17,725 ******************************************************************************** 2023-07-07T19:48:17,726 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T19:48:17,726 versions. Please use the underscore name 'description_file' instead. 2023-07-07T19:48:17,726 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T19:48:17,726 or your builds will no longer be supported. 2023-07-07T19:48:17,726 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T19:48:17,726 ******************************************************************************** 2023-07-07T19:48:17,727 !! 2023-07-07T19:48:17,727 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T19:48:17,892 running bdist_wheel 2023-07-07T19:48:18,206 running build 2023-07-07T19:48:18,206 running build_py 2023-07-07T19:48:18,236 creating build 2023-07-07T19:48:18,236 creating build/lib.linux-armv7l-cpython-39 2023-07-07T19:48:18,237 creating build/lib.linux-armv7l-cpython-39/SELDOMpy 2023-07-07T19:48:18,238 copying SELDOMpy/__init__.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy 2023-07-07T19:48:18,241 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,242 copying SELDOMpy/src/__init__.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,243 running egg_info 2023-07-07T19:48:18,309 writing SELDOMpy.egg-info/PKG-INFO 2023-07-07T19:48:18,312 writing dependency_links to SELDOMpy.egg-info/dependency_links.txt 2023-07-07T19:48:18,315 writing requirements to SELDOMpy.egg-info/requires.txt 2023-07-07T19:48:18,316 writing top-level names to SELDOMpy.egg-info/top_level.txt 2023-07-07T19:48:18,353 reading manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:48:18,360 reading manifest template 'MANIFEST.in' 2023-07-07T19:48:18,366 adding license file 'LICENSE.txt' 2023-07-07T19:48:18,374 writing manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-07-07T19:48:18,376 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.examples.MAPK' is absent from the `packages` configuration. 2023-07-07T19:48:18,376 !! 2023-07-07T19:48:18,377 ******************************************************************************** 2023-07-07T19:48:18,377 ############################ 2023-07-07T19:48:18,377 # Package would be ignored # 2023-07-07T19:48:18,377 ############################ 2023-07-07T19:48:18,377 Python recognizes 'SELDOMpy.examples.MAPK' as an importable package[^1], 2023-07-07T19:48:18,377 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:48:18,378 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:48:18,378 package, please make sure that 'SELDOMpy.examples.MAPK' is explicitly added 2023-07-07T19:48:18,378 to the `packages` configuration field. 2023-07-07T19:48:18,378 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:48:18,378 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:48:18,378 instead of `find_packages(...)`/`find:`). 2023-07-07T19:48:18,378 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:48:18,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:48:18,379 If you don't want 'SELDOMpy.examples.MAPK' to be distributed and are 2023-07-07T19:48:18,379 already explicitly excluding 'SELDOMpy.examples.MAPK' via 2023-07-07T19:48:18,379 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:48:18,379 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:48:18,379 combination with a more fine grained `package-data` configuration. 2023-07-07T19:48:18,380 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:48:18,380 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:48:18,380 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:48:18,380 even if it does not contain any `.py` files. 2023-07-07T19:48:18,380 On the other hand, currently there is no concept of package data 2023-07-07T19:48:18,381 directory, all directories are treated like packages. 2023-07-07T19:48:18,381 ******************************************************************************** 2023-07-07T19:48:18,381 !! 2023-07-07T19:48:18,381 check.warn(importable) 2023-07-07T19:48:18,381 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.examples.SP' is absent from the `packages` configuration. 2023-07-07T19:48:18,381 !! 2023-07-07T19:48:18,382 ******************************************************************************** 2023-07-07T19:48:18,382 ############################ 2023-07-07T19:48:18,382 # Package would be ignored # 2023-07-07T19:48:18,382 ############################ 2023-07-07T19:48:18,382 Python recognizes 'SELDOMpy.examples.SP' as an importable package[^1], 2023-07-07T19:48:18,382 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:48:18,382 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:48:18,383 package, please make sure that 'SELDOMpy.examples.SP' is explicitly added 2023-07-07T19:48:18,383 to the `packages` configuration field. 2023-07-07T19:48:18,383 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:48:18,383 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:48:18,383 instead of `find_packages(...)`/`find:`). 2023-07-07T19:48:18,383 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:48:18,384 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:48:18,384 If you don't want 'SELDOMpy.examples.SP' to be distributed and are 2023-07-07T19:48:18,384 already explicitly excluding 'SELDOMpy.examples.SP' via 2023-07-07T19:48:18,384 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:48:18,384 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:48:18,384 combination with a more fine grained `package-data` configuration. 2023-07-07T19:48:18,384 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:48:18,385 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:48:18,385 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:48:18,385 even if it does not contain any `.py` files. 2023-07-07T19:48:18,385 On the other hand, currently there is no concept of package data 2023-07-07T19:48:18,385 directory, all directories are treated like packages. 2023-07-07T19:48:18,385 ******************************************************************************** 2023-07-07T19:48:18,386 !! 2023-07-07T19:48:18,386 check.warn(importable) 2023-07-07T19:48:18,386 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.functions' is absent from the `packages` configuration. 2023-07-07T19:48:18,386 !! 2023-07-07T19:48:18,386 ******************************************************************************** 2023-07-07T19:48:18,386 ############################ 2023-07-07T19:48:18,386 # Package would be ignored # 2023-07-07T19:48:18,387 ############################ 2023-07-07T19:48:18,387 Python recognizes 'SELDOMpy.functions' as an importable package[^1], 2023-07-07T19:48:18,387 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:48:18,387 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:48:18,387 package, please make sure that 'SELDOMpy.functions' is explicitly added 2023-07-07T19:48:18,387 to the `packages` configuration field. 2023-07-07T19:48:18,387 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:48:18,388 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:48:18,388 instead of `find_packages(...)`/`find:`). 2023-07-07T19:48:18,388 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:48:18,388 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:48:18,388 If you don't want 'SELDOMpy.functions' to be distributed and are 2023-07-07T19:48:18,389 already explicitly excluding 'SELDOMpy.functions' via 2023-07-07T19:48:18,389 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:48:18,389 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:48:18,389 combination with a more fine grained `package-data` configuration. 2023-07-07T19:48:18,389 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:48:18,389 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:48:18,390 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:48:18,390 even if it does not contain any `.py` files. 2023-07-07T19:48:18,390 On the other hand, currently there is no concept of package data 2023-07-07T19:48:18,390 directory, all directories are treated like packages. 2023-07-07T19:48:18,390 ******************************************************************************** 2023-07-07T19:48:18,390 !! 2023-07-07T19:48:18,390 check.warn(importable) 2023-07-07T19:48:18,390 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_amigo' is absent from the `packages` configuration. 2023-07-07T19:48:18,391 !! 2023-07-07T19:48:18,391 ******************************************************************************** 2023-07-07T19:48:18,391 ############################ 2023-07-07T19:48:18,391 # Package would be ignored # 2023-07-07T19:48:18,391 ############################ 2023-07-07T19:48:18,391 Python recognizes 'SELDOMpy.src.include.include_amigo' as an importable package[^1], 2023-07-07T19:48:18,391 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:48:18,392 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:48:18,392 package, please make sure that 'SELDOMpy.src.include.include_amigo' is explicitly added 2023-07-07T19:48:18,392 to the `packages` configuration field. 2023-07-07T19:48:18,392 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:48:18,392 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:48:18,392 instead of `find_packages(...)`/`find:`). 2023-07-07T19:48:18,393 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:48:18,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:48:18,393 If you don't want 'SELDOMpy.src.include.include_amigo' to be distributed and are 2023-07-07T19:48:18,393 already explicitly excluding 'SELDOMpy.src.include.include_amigo' via 2023-07-07T19:48:18,393 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:48:18,393 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:48:18,393 combination with a more fine grained `package-data` configuration. 2023-07-07T19:48:18,394 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:48:18,394 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:48:18,394 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:48:18,394 even if it does not contain any `.py` files. 2023-07-07T19:48:18,395 On the other hand, currently there is no concept of package data 2023-07-07T19:48:18,395 directory, all directories are treated like packages. 2023-07-07T19:48:18,395 ******************************************************************************** 2023-07-07T19:48:18,395 !! 2023-07-07T19:48:18,395 check.warn(importable) 2023-07-07T19:48:18,395 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.cvodes' is absent from the `packages` configuration. 2023-07-07T19:48:18,395 !! 2023-07-07T19:48:18,396 ******************************************************************************** 2023-07-07T19:48:18,396 ############################ 2023-07-07T19:48:18,396 # Package would be ignored # 2023-07-07T19:48:18,396 ############################ 2023-07-07T19:48:18,396 Python recognizes 'SELDOMpy.src.include.include_cvodes.cvodes' as an importable package[^1], 2023-07-07T19:48:18,396 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:48:18,397 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:48:18,397 package, please make sure that 'SELDOMpy.src.include.include_cvodes.cvodes' is explicitly added 2023-07-07T19:48:18,397 to the `packages` configuration field. 2023-07-07T19:48:18,397 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:48:18,397 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:48:18,397 instead of `find_packages(...)`/`find:`). 2023-07-07T19:48:18,398 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:48:18,398 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:48:18,398 If you don't want 'SELDOMpy.src.include.include_cvodes.cvodes' to be distributed and are 2023-07-07T19:48:18,398 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.cvodes' via 2023-07-07T19:48:18,399 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:48:18,399 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:48:18,399 combination with a more fine grained `package-data` configuration. 2023-07-07T19:48:18,399 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:48:18,399 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:48:18,400 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:48:18,400 even if it does not contain any `.py` files. 2023-07-07T19:48:18,400 On the other hand, currently there is no concept of package data 2023-07-07T19:48:18,400 directory, all directories are treated like packages. 2023-07-07T19:48:18,401 ******************************************************************************** 2023-07-07T19:48:18,401 !! 2023-07-07T19:48:18,401 check.warn(importable) 2023-07-07T19:48:18,401 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.nvector' is absent from the `packages` configuration. 2023-07-07T19:48:18,401 !! 2023-07-07T19:48:18,402 ******************************************************************************** 2023-07-07T19:48:18,402 ############################ 2023-07-07T19:48:18,402 # Package would be ignored # 2023-07-07T19:48:18,402 ############################ 2023-07-07T19:48:18,402 Python recognizes 'SELDOMpy.src.include.include_cvodes.nvector' as an importable package[^1], 2023-07-07T19:48:18,402 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:48:18,403 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:48:18,403 package, please make sure that 'SELDOMpy.src.include.include_cvodes.nvector' is explicitly added 2023-07-07T19:48:18,403 to the `packages` configuration field. 2023-07-07T19:48:18,403 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:48:18,404 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:48:18,404 instead of `find_packages(...)`/`find:`). 2023-07-07T19:48:18,404 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:48:18,404 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:48:18,405 If you don't want 'SELDOMpy.src.include.include_cvodes.nvector' to be distributed and are 2023-07-07T19:48:18,405 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.nvector' via 2023-07-07T19:48:18,405 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:48:18,405 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:48:18,405 combination with a more fine grained `package-data` configuration. 2023-07-07T19:48:18,405 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:48:18,406 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:48:18,406 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:48:18,406 even if it does not contain any `.py` files. 2023-07-07T19:48:18,406 On the other hand, currently there is no concept of package data 2023-07-07T19:48:18,406 directory, all directories are treated like packages. 2023-07-07T19:48:18,406 ******************************************************************************** 2023-07-07T19:48:18,407 !! 2023-07-07T19:48:18,407 check.warn(importable) 2023-07-07T19:48:18,407 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.sundials' is absent from the `packages` configuration. 2023-07-07T19:48:18,407 !! 2023-07-07T19:48:18,408 ******************************************************************************** 2023-07-07T19:48:18,408 ############################ 2023-07-07T19:48:18,408 # Package would be ignored # 2023-07-07T19:48:18,408 ############################ 2023-07-07T19:48:18,408 Python recognizes 'SELDOMpy.src.include.include_cvodes.sundials' as an importable package[^1], 2023-07-07T19:48:18,408 but it is absent from setuptools' `packages` configuration. 2023-07-07T19:48:18,409 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-07T19:48:18,409 package, please make sure that 'SELDOMpy.src.include.include_cvodes.sundials' is explicitly added 2023-07-07T19:48:18,409 to the `packages` configuration field. 2023-07-07T19:48:18,409 Alternatively, you can also rely on setuptools' discovery methods 2023-07-07T19:48:18,409 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-07T19:48:18,409 instead of `find_packages(...)`/`find:`). 2023-07-07T19:48:18,410 You can read more about "package discovery" on setuptools documentation page: 2023-07-07T19:48:18,410 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-07T19:48:18,410 If you don't want 'SELDOMpy.src.include.include_cvodes.sundials' to be distributed and are 2023-07-07T19:48:18,411 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.sundials' via 2023-07-07T19:48:18,411 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-07T19:48:18,411 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-07T19:48:18,411 combination with a more fine grained `package-data` configuration. 2023-07-07T19:48:18,411 You can read more about "package data files" on setuptools documentation page: 2023-07-07T19:48:18,412 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-07T19:48:18,412 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-07T19:48:18,412 even if it does not contain any `.py` files. 2023-07-07T19:48:18,413 On the other hand, currently there is no concept of package data 2023-07-07T19:48:18,413 directory, all directories are treated like packages. 2023-07-07T19:48:18,413 ******************************************************************************** 2023-07-07T19:48:18,413 !! 2023-07-07T19:48:18,413 check.warn(importable) 2023-07-07T19:48:18,414 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/examples 2023-07-07T19:48:18,414 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/examples/MAPK 2023-07-07T19:48:18,414 copying SELDOMpy/examples/MAPK/MAPK.xlsx -> build/lib.linux-armv7l-cpython-39/SELDOMpy/examples/MAPK 2023-07-07T19:48:18,414 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/examples/MAPK 2023-07-07T19:48:18,414 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/examples/MAPK 2023-07-07T19:48:18,414 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/examples/SP 2023-07-07T19:48:18,414 copying SELDOMpy/examples/SP/SP.xlsx -> build/lib.linux-armv7l-cpython-39/SELDOMpy/examples/SP 2023-07-07T19:48:18,415 copying SELDOMpy/examples/SP/SP_training_and_reduce.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/examples/SP 2023-07-07T19:48:18,415 copying SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/examples/SP 2023-07-07T19:48:18,415 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,415 copying SELDOMpy/functions/buildmim.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,417 copying SELDOMpy/functions/extras.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,419 copying SELDOMpy/functions/gen_exps.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,421 copying SELDOMpy/functions/getLBODEmodel.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,424 copying SELDOMpy/functions/getRandomLBODEmodel.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,426 copying SELDOMpy/functions/optimization.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,428 copying SELDOMpy/functions/plot_results.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,430 copying SELDOMpy/functions/reduce_fun.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,432 copying SELDOMpy/functions/simulate_logic_based_ode.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,434 copying SELDOMpy/functions/simulate_logic_based_ode_obs.py -> build/lib.linux-armv7l-cpython-39/SELDOMpy/functions 2023-07-07T19:48:18,436 copying SELDOMpy/src/AMIGO_model.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,439 copying SELDOMpy/src/AMIGO_model_stats.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,441 copying SELDOMpy/src/AMIGO_problem.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,443 copying SELDOMpy/src/CNOStructure.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,445 copying SELDOMpy/src/anODEModel.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,447 copying SELDOMpy/src/cvodea.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,450 copying SELDOMpy/src/cvodea_io.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,453 copying SELDOMpy/src/cvodes.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,460 copying SELDOMpy/src/cvodes_band.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,462 copying SELDOMpy/src/cvodes_bandpre.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,465 copying SELDOMpy/src/cvodes_bandpre_impl.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,467 copying SELDOMpy/src/cvodes_bbdpre.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,470 copying SELDOMpy/src/cvodes_bbdpre_impl.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,472 copying SELDOMpy/src/cvodes_dense.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,475 copying SELDOMpy/src/cvodes_diag.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,478 copying SELDOMpy/src/cvodes_diag_impl.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,480 copying SELDOMpy/src/cvodes_direct.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,483 copying SELDOMpy/src/cvodes_direct_impl.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,485 copying SELDOMpy/src/cvodes_impl.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,489 copying SELDOMpy/src/cvodes_io.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,493 copying SELDOMpy/src/cvodes_spbcgs.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,496 copying SELDOMpy/src/cvodes_spgmr.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,499 copying SELDOMpy/src/cvodes_spils.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,502 copying SELDOMpy/src/cvodes_spils_impl.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,504 copying SELDOMpy/src/cvodes_sptfqmr.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,507 copying SELDOMpy/src/decimal2binary.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,509 copying SELDOMpy/src/dhc.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,511 copying SELDOMpy/src/findStates.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,513 copying SELDOMpy/src/fnvector_serial.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,515 copying SELDOMpy/src/fnvector_serial.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,517 copying SELDOMpy/src/getAdjacencyMatrix.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,519 copying SELDOMpy/src/getNumBits.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,521 copying SELDOMpy/src/getNumInputs.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,523 copying SELDOMpy/src/getStateIndex.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,525 copying SELDOMpy/src/getTruthTables.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,528 copying SELDOMpy/src/get_count_bits.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,529 copying SELDOMpy/src/get_input_index.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,532 copying SELDOMpy/src/get_support_truth_tables.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,534 copying SELDOMpy/src/get_truth_tables_index.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,536 copying SELDOMpy/src/hill_function.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,538 copying SELDOMpy/src/linear_transfer_function.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,540 copying SELDOMpy/src/normHill.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,542 copying SELDOMpy/src/nvector_serial.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,544 copying SELDOMpy/src/printAdjMat.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,546 copying SELDOMpy/src/printInterMat.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,548 copying SELDOMpy/src/printNminiTerms.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,550 copying SELDOMpy/src/printTruthTables.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,552 copying SELDOMpy/src/sim_logic_ode.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,555 copying SELDOMpy/src/simulate_amigo_model.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,557 copying SELDOMpy/src/sundials_band.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,560 copying SELDOMpy/src/sundials_dense.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,562 copying SELDOMpy/src/sundials_direct.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,565 copying SELDOMpy/src/sundials_iterative.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,568 copying SELDOMpy/src/sundials_math.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,570 copying SELDOMpy/src/sundials_nvector.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,572 copying SELDOMpy/src/sundials_spbcgs.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,575 copying SELDOMpy/src/sundials_spgmr.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,577 copying SELDOMpy/src/sundials_sptfqmr.c -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,580 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include 2023-07-07T19:48:18,581 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,582 copying SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,584 copying SELDOMpy/src/include/include_amigo/AMIGO_model.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,586 copying SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,588 copying SELDOMpy/src/include/include_amigo/AMIGO_problem.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,591 copying SELDOMpy/src/include/include_amigo/amigoJAC.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,593 copying SELDOMpy/src/include/include_amigo/amigoRHS.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,595 copying SELDOMpy/src/include/include_amigo/amigoSensRHS.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,597 copying SELDOMpy/src/include/include_amigo/simulate_amigo_model.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_amigo 2023-07-07T19:48:18,599 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes 2023-07-07T19:48:18,599 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,601 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,605 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,607 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,610 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,613 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,615 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,617 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,620 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,623 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,625 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,627 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,630 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/cvodes 2023-07-07T19:48:18,632 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/nvector 2023-07-07T19:48:18,633 copying SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/nvector 2023-07-07T19:48:18,636 creating build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,637 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,639 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,641 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,644 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,647 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,649 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,651 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,654 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,657 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,660 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,662 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,665 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,667 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h -> build/lib.linux-armv7l-cpython-39/SELDOMpy/src/include/include_cvodes/sundials 2023-07-07T19:48:18,671 running build_ext 2023-07-07T19:48:18,679 building 'hello' extension 2023-07-07T19:48:18,680 creating build/temp.linux-armv7l-cpython-39 2023-07-07T19:48:18,681 creating build/temp.linux-armv7l-cpython-39/SELDOMpy 2023-07-07T19:48:18,682 creating build/temp.linux-armv7l-cpython-39/SELDOMpy/src 2023-07-07T19:48:18,685 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c SELDOMpy/src/AMIGO_model.c -o build/temp.linux-armv7l-cpython-39/SELDOMpy/src/AMIGO_model.o 2023-07-07T19:48:19,067 SELDOMpy/src/AMIGO_model.c: In function ‘simulate_AMIGO_model’: 2023-07-07T19:48:19,068 SELDOMpy/src/AMIGO_model.c:225:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-07-07T19:48:19,068 225 | }; 2023-07-07T19:48:19,068 | ^ 2023-07-07T19:48:19,576 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c SELDOMpy/src/AMIGO_model_stats.c -o build/temp.linux-armv7l-cpython-39/SELDOMpy/src/AMIGO_model_stats.o 2023-07-07T19:48:19,620 SELDOMpy/src/AMIGO_model_stats.c:1:9: warning: #pragma once in main file 2023-07-07T19:48:19,620 1 | #pragma once 2023-07-07T19:48:19,621 | ^~~~ 2023-07-07T19:48:19,687 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c SELDOMpy/src/AMIGO_problem.c -o build/temp.linux-armv7l-cpython-39/SELDOMpy/src/AMIGO_problem.o 2023-07-07T19:48:19,814 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LSQ’: 2023-07-07T19:48:19,814 SELDOMpy/src/AMIGO_problem.c:132: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2023-07-07T19:48:19,815 132 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-07-07T19:48:19,815 | 2023-07-07T19:48:19,815 SELDOMpy/src/AMIGO_problem.c:134: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2023-07-07T19:48:19,815 134 | #pragma omp for schedule(dynamic,1) private(i) 2023-07-07T19:48:19,815 | 2023-07-07T19:48:19,815 SELDOMpy/src/AMIGO_problem.c:127:6: warning: unused variable ‘counter’ [-Wunused-variable] 2023-07-07T19:48:19,816 127 | int counter=0; 2023-07-07T19:48:19,816 | ^~~~~~~ 2023-07-07T19:48:19,816 SELDOMpy/src/AMIGO_problem.c:126:15: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-07-07T19:48:19,816 126 | int i, j, k, n_exps, n_times, n_obs; 2023-07-07T19:48:19,816 | ^~~~~~ 2023-07-07T19:48:19,816 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LLK’: 2023-07-07T19:48:19,817 SELDOMpy/src/AMIGO_problem.c:185: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 2023-07-07T19:48:19,817 185 | #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-07-07T19:48:19,817 | 2023-07-07T19:48:19,817 SELDOMpy/src/AMIGO_problem.c:187: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas] 2023-07-07T19:48:19,817 187 | #pragma omp for schedule(dynamic,1) private(i,flag) 2023-07-07T19:48:19,817 | 2023-07-07T19:48:19,817 SELDOMpy/src/AMIGO_problem.c:182:6: warning: unused variable ‘counter’ [-Wunused-variable] 2023-07-07T19:48:19,818 182 | int counter=0; 2023-07-07T19:48:19,818 | ^~~~~~~ 2023-07-07T19:48:19,819 SELDOMpy/src/AMIGO_problem.c:181:39: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-07-07T19:48:19,819 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2023-07-07T19:48:19,819 | ^~~~ 2023-07-07T19:48:19,819 SELDOMpy/src/AMIGO_problem.c:181:16: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-07-07T19:48:19,819 181 | int i, j, k, n_exps, n_times, n_obs,flag; 2023-07-07T19:48:19,820 | ^~~~~~ 2023-07-07T19:48:20,150 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c SELDOMpy/src/anODEModel.c -o build/temp.linux-armv7l-cpython-39/SELDOMpy/src/anODEModel.o 2023-07-07T19:48:20,269 SELDOMpy/src/anODEModel.c: In function ‘amigoRHS’: 2023-07-07T19:48:20,269 SELDOMpy/src/anODEModel.c:23:9: warning: unused variable ‘countBin’ [-Wunused-variable] 2023-07-07T19:48:20,270 23 | int countBin=0; 2023-07-07T19:48:20,270 | ^~~~~~~~ 2023-07-07T19:48:20,271 SELDOMpy/src/anODEModel.c: In function ‘amigo_Y_at_tcon’: 2023-07-07T19:48:20,271 SELDOMpy/src/anODEModel.c:118:18: warning: unused variable ‘amigo_model’ [-Wunused-variable] 2023-07-07T19:48:20,271 118 | AMIGO_model* amigo_model=(AMIGO_model*)data; 2023-07-07T19:48:20,271 | ^~~~~~~~~~~ 2023-07-07T19:48:20,419 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c SELDOMpy/src/cvodea.c -o build/temp.linux-armv7l-cpython-39/SELDOMpy/src/cvodea.o 2023-07-07T19:48:20,557 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteStorePnt’: 2023-07-07T19:48:20,558 SELDOMpy/src/cvodea.c:2461:11: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 2023-07-07T19:48:20,558 2461 | int is, retval; 2023-07-07T19:48:20,558 | ^~~~~~ 2023-07-07T19:48:20,568 SELDOMpy/src/cvodea.c: In function ‘CVArhsQ’: 2023-07-07T19:48:20,570 SELDOMpy/src/cvodea.c:2957:7: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-07-07T19:48:20,570 2957 | int flag, retval; 2023-07-07T19:48:20,571 | ^~~~ 2023-07-07T19:48:20,979 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteGetY’: 2023-07-07T19:48:20,980 SELDOMpy/src/cvodea.c:2523:19: warning: ‘ySd0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-07T19:48:20,981 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-07-07T19:48:20,981 | ^~~~ 2023-07-07T19:48:20,982 SELDOMpy/src/cvodea.c:2523:13: warning: ‘yS0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-07T19:48:20,982 2523 | N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-07-07T19:48:20,982 | ^~~ 2023-07-07T19:48:22,167 SELDOMpy/src/cvodea.c: In function ‘CVodeB’: 2023-07-07T19:48:22,167 SELDOMpy/src/cvodea.c:1263:13: warning: ‘flag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-07-07T19:48:22,167 1263 | int sign, flag; 2023-07-07T19:48:22,168 | ^~~~ 2023-07-07T19:48:22,547 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c SELDOMpy/src/cvodea_io.c -o build/temp.linux-armv7l-cpython-39/SELDOMpy/src/cvodea_io.o 2023-07-07T19:48:22,993 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c SELDOMpy/src/cvodes.c -o build/temp.linux-armv7l-cpython-39/SELDOMpy/src/cvodes.o 2023-07-07T19:48:23,166 SELDOMpy/src/cvodes.c: In function ‘cvHin’: 2023-07-07T19:48:23,168 SELDOMpy/src/cvodes.c:4328:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2023-07-07T19:48:23,168 4328 | if (count1 <= 2) 2023-07-07T19:48:23,168 | ^~ 2023-07-07T19:48:23,170 SELDOMpy/src/cvodes.c:4330:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2023-07-07T19:48:23,170 4330 | if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); 2023-07-07T19:48:23,170 | ^~ 2023-07-07T19:48:23,421 SELDOMpy/src/cvodes.c: In function ‘cvQuadSensRhs1InternalDQ’: 2023-07-07T19:48:23,425 SELDOMpy/src/cvodes.c:8850:20: warning: variable ‘rDeltap’ set but not used [-Wunused-but-set-variable] 2023-07-07T19:48:23,426 8850 | realtype Deltap, rDeltap; 2023-07-07T19:48:23,426 | ^~~~~~~ 2023-07-07T19:48:23,426 SELDOMpy/src/cvodes.c: In function ‘cvProcessError’: 2023-07-07T19:48:23,429 SELDOMpy/src/cvodes.c:8961:21: error: format not a string literal and no format arguments [-Werror=format-security] 2023-07-07T19:48:23,430 8961 | fprintf(stderr, msg); 2023-07-07T19:48:23,430 | ^~~ 2023-07-07T19:48:29,251 cc1: some warnings being treated as errors 2023-07-07T19:48:29,261 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-07-07T19:48:29,382 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-07-07T19:48:29,400 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-07-07T19:48:29,400 exec(compile('"'"''"'"''"'"' 2023-07-07T19:48:29,400 # This is -- a caller that pip uses to run setup.py 2023-07-07T19:48:29,400 # 2023-07-07T19:48:29,400 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-07-07T19:48:29,400 # import from `distutils.core` to work with newer packaging standards. 2023-07-07T19:48:29,400 # - It provides a clear error message when setuptools is not installed. 2023-07-07T19:48:29,400 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-07-07T19:48:29,400 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-07-07T19:48:29,400 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-07-07T19:48:29,400 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-07-07T19:48:29,400 import os, sys, tokenize 2023-07-07T19:48:29,400 2023-07-07T19:48:29,400 try: 2023-07-07T19:48:29,400 import setuptools 2023-07-07T19:48:29,400 except ImportError as error: 2023-07-07T19:48:29,400 print( 2023-07-07T19:48:29,400 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-07-07T19:48:29,400 "the build environment.", 2023-07-07T19:48:29,400 file=sys.stderr, 2023-07-07T19:48:29,400 ) 2023-07-07T19:48:29,400 sys.exit(1) 2023-07-07T19:48:29,400 2023-07-07T19:48:29,400 __file__ = %r 2023-07-07T19:48:29,400 sys.argv[0] = __file__ 2023-07-07T19:48:29,400 2023-07-07T19:48:29,400 if os.path.exists(__file__): 2023-07-07T19:48:29,400 filename = __file__ 2023-07-07T19:48:29,400 with tokenize.open(__file__) as f: 2023-07-07T19:48:29,400 setup_py_code = f.read() 2023-07-07T19:48:29,400 else: 2023-07-07T19:48:29,400 filename = "" 2023-07-07T19:48:29,400 setup_py_code = "from setuptools import setup; setup()" 2023-07-07T19:48:29,400 2023-07-07T19:48:29,400 exec(compile(setup_py_code, filename, "exec")) 2023-07-07T19:48:29,400 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-ka7b3xnl/seldompy_96b23082d9ce498786e2aa57f5bde016/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-hhp2oyjm[/] 2023-07-07T19:48:29,400 [bold magenta]cwd[/]: /tmp/pip-wheel-ka7b3xnl/seldompy_96b23082d9ce498786e2aa57f5bde016/ 2023-07-07T19:48:29,400 Building wheel for seldompy (setup.py): finished with status 'error' 2023-07-07T19:48:29,401 ERROR: Failed building wheel for seldompy 2023-07-07T19:48:29,402 Running setup.py clean for seldompy 2023-07-07T19:48:29,403 Running command python setup.py clean 2023-07-07T19:48:30,077 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T19:48:30,077 !! 2023-07-07T19:48:30,078 ******************************************************************************** 2023-07-07T19:48:30,078 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T19:48:30,078 versions. Please use the underscore name 'description_file' instead. 2023-07-07T19:48:30,078 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T19:48:30,078 or your builds will no longer be supported. 2023-07-07T19:48:30,079 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T19:48:30,079 ******************************************************************************** 2023-07-07T19:48:30,079 !! 2023-07-07T19:48:30,079 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T19:48:30,205 running clean 2023-07-07T19:48:30,258 removing 'build/temp.linux-armv7l-cpython-39' (and everything under it) 2023-07-07T19:48:30,261 removing 'build/lib.linux-armv7l-cpython-39' (and everything under it) 2023-07-07T19:48:30,295 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-07-07T19:48:30,295 'build/scripts-3.9' does not exist -- can't clean it 2023-07-07T19:48:30,295 removing 'build' 2023-07-07T19:48:30,385 Failed to build seldompy 2023-07-07T19:48:30,387 ERROR: Failed to build one or more wheels 2023-07-07T19:48:30,388 Exception information: 2023-07-07T19:48:30,388 Traceback (most recent call last): 2023-07-07T19:48:30,388 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-07-07T19:48:30,388 status = run_func(*args) 2023-07-07T19:48:30,388 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-07-07T19:48:30,388 return func(self, options, args) 2023-07-07T19:48:30,388 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-07-07T19:48:30,388 raise CommandError("Failed to build one or more wheels") 2023-07-07T19:48:30,388 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-07-07T19:48:30,391 Removed build tracker: '/tmp/pip-build-tracker-kykvnli4'