2023-07-07T23:04:34,803 Created temporary directory: /tmp/pip-build-tracker-sx86ne8k 2023-07-07T23:04:34,806 Initialized build tracking at /tmp/pip-build-tracker-sx86ne8k 2023-07-07T23:04:34,806 Created build tracker: /tmp/pip-build-tracker-sx86ne8k 2023-07-07T23:04:34,806 Entered build tracker: /tmp/pip-build-tracker-sx86ne8k 2023-07-07T23:04:34,807 Created temporary directory: /tmp/pip-wheel-mtzv91j2 2023-07-07T23:04:34,816 Created temporary directory: /tmp/pip-ephem-wheel-cache-93c8gd7u 2023-07-07T23:04:34,867 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-07T23:04:34,875 2 location(s) to search for versions of annomate: 2023-07-07T23:04:34,875 * https://pypi.org/simple/annomate/ 2023-07-07T23:04:34,875 * https://www.piwheels.org/simple/annomate/ 2023-07-07T23:04:34,876 Fetching project page and analyzing links: https://pypi.org/simple/annomate/ 2023-07-07T23:04:34,877 Getting page https://pypi.org/simple/annomate/ 2023-07-07T23:04:34,881 Found index url https://pypi.org/simple/ 2023-07-07T23:04:35,074 Fetched page https://pypi.org/simple/annomate/ as application/vnd.pypi.simple.v1+json 2023-07-07T23:04:35,078 Found link https://files.pythonhosted.org/packages/f6/9c/e8f438b02f2ee63d29f645b6355e6bd6b247fa52ac9886fdeea558a8d7fb/AnnoMate-0.0.0.tar.gz (from https://pypi.org/simple/annomate/) (requires-python:>=3.6), version: 0.0.0 2023-07-07T23:04:35,079 Found link https://files.pythonhosted.org/packages/85/2e/208a503bd83d596f5b1b1257723d76dc89e2bfb2b75c8290cd0c61ee55e8/AnnoMate-0.0.1.tar.gz (from https://pypi.org/simple/annomate/) (requires-python:>=3.6), version: 0.0.1 2023-07-07T23:04:35,080 Fetching project page and analyzing links: https://www.piwheels.org/simple/annomate/ 2023-07-07T23:04:35,081 Getting page https://www.piwheels.org/simple/annomate/ 2023-07-07T23:04:35,083 Found index url https://www.piwheels.org/simple/ 2023-07-07T23:04:35,301 Fetched page https://www.piwheels.org/simple/annomate/ as text/html 2023-07-07T23:04:35,304 Skipping link: No binaries permitted for annomate: https://www.piwheels.org/simple/annomate/AnnoMate-0.0.0-py3-none-any.whl#sha256=57d0d0d857db623e6af6296676ae887f3c31f307bf15dc0edf7176ba61debf6f (from https://www.piwheels.org/simple/annomate/) (requires-python:>=3.6) 2023-07-07T23:04:35,305 Skipping link: not a file: https://www.piwheels.org/simple/annomate/ 2023-07-07T23:04:35,305 Skipping link: not a file: https://pypi.org/simple/annomate/ 2023-07-07T23:04:35,338 Given no hashes to check 1 links for project 'annomate': discarding no candidates 2023-07-07T23:04:35,368 Collecting annomate==0.0.1 2023-07-07T23:04:35,373 Created temporary directory: /tmp/pip-unpack-_sfbhg4c 2023-07-07T23:04:35,576 Downloading AnnoMate-0.0.1.tar.gz (39 kB) 2023-07-07T23:04:35,746 Added annomate==0.0.1 from https://files.pythonhosted.org/packages/85/2e/208a503bd83d596f5b1b1257723d76dc89e2bfb2b75c8290cd0c61ee55e8/AnnoMate-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-sx86ne8k' 2023-07-07T23:04:35,757 Created temporary directory: /tmp/pip-build-env-m96yf9e4 2023-07-07T23:04:35,777 Installing build dependencies: started 2023-07-07T23:04:35,779 Running command pip subprocess to install build dependencies 2023-07-07T23:04:38,507 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-07-07T23:04:39,285 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-07T23:04:43,334 Collecting setuptools>=42 2023-07-07T23:04:43,520 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-07-07T23:04:48,518 Installing collected packages: setuptools 2023-07-07T23:04:52,813 Successfully installed setuptools-68.0.0 2023-07-07T23:04:53,255 Installing build dependencies: finished with status 'done' 2023-07-07T23:04:53,266 Getting requirements to build wheel: started 2023-07-07T23:04:53,268 Running command Getting requirements to build wheel 2023-07-07T23:04:54,616 running egg_info 2023-07-07T23:04:54,628 writing AnnoMate.egg-info/PKG-INFO 2023-07-07T23:04:54,633 writing dependency_links to AnnoMate.egg-info/dependency_links.txt 2023-07-07T23:04:54,638 writing requirements to AnnoMate.egg-info/requires.txt 2023-07-07T23:04:54,642 writing top-level names to AnnoMate.egg-info/top_level.txt 2023-07-07T23:04:54,687 reading manifest file 'AnnoMate.egg-info/SOURCES.txt' 2023-07-07T23:04:54,693 adding license file 'LICENSE.txt' 2023-07-07T23:04:54,700 writing manifest file 'AnnoMate.egg-info/SOURCES.txt' 2023-07-07T23:04:54,705 /tmp/pip-build-env-m96yf9e4/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T23:04:54,705 !! 2023-07-07T23:04:54,706 ******************************************************************************** 2023-07-07T23:04:54,706 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T23:04:54,706 versions. Please use the underscore name 'description_file' instead. 2023-07-07T23:04:54,707 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T23:04:54,707 or your builds will no longer be supported. 2023-07-07T23:04:54,708 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T23:04:54,708 ******************************************************************************** 2023-07-07T23:04:54,709 !! 2023-07-07T23:04:54,709 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T23:04:54,823 Getting requirements to build wheel: finished with status 'done' 2023-07-07T23:04:54,847 Installing backend dependencies: started 2023-07-07T23:04:54,849 Running command pip subprocess to install backend dependencies 2023-07-07T23:04:57,606 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-07-07T23:04:58,377 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-07T23:04:59,259 Collecting wheel 2023-07-07T23:04:59,298 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-07-07T23:05:03,598 Installing collected packages: wheel 2023-07-07T23:05:04,065 Creating /tmp/pip-build-env-m96yf9e4/normal/bin 2023-07-07T23:05:04,070 changing mode of /tmp/pip-build-env-m96yf9e4/normal/bin/wheel to 755 2023-07-07T23:05:04,096 Successfully installed wheel-0.40.0 2023-07-07T23:05:04,473 Installing backend dependencies: finished with status 'done' 2023-07-07T23:05:04,479 Created temporary directory: /tmp/pip-modern-metadata-fsz94sm8 2023-07-07T23:05:04,487 Preparing metadata (pyproject.toml): started 2023-07-07T23:05:04,489 Running command Preparing metadata (pyproject.toml) 2023-07-07T23:05:05,771 running dist_info 2023-07-07T23:05:05,811 creating /tmp/pip-modern-metadata-fsz94sm8/AnnoMate.egg-info 2023-07-07T23:05:05,820 writing /tmp/pip-modern-metadata-fsz94sm8/AnnoMate.egg-info/PKG-INFO 2023-07-07T23:05:05,824 writing dependency_links to /tmp/pip-modern-metadata-fsz94sm8/AnnoMate.egg-info/dependency_links.txt 2023-07-07T23:05:05,830 writing requirements to /tmp/pip-modern-metadata-fsz94sm8/AnnoMate.egg-info/requires.txt 2023-07-07T23:05:05,832 writing top-level names to /tmp/pip-modern-metadata-fsz94sm8/AnnoMate.egg-info/top_level.txt 2023-07-07T23:05:05,835 writing manifest file '/tmp/pip-modern-metadata-fsz94sm8/AnnoMate.egg-info/SOURCES.txt' 2023-07-07T23:05:05,882 reading manifest file '/tmp/pip-modern-metadata-fsz94sm8/AnnoMate.egg-info/SOURCES.txt' 2023-07-07T23:05:05,886 adding license file 'LICENSE.txt' 2023-07-07T23:05:05,892 writing manifest file '/tmp/pip-modern-metadata-fsz94sm8/AnnoMate.egg-info/SOURCES.txt' 2023-07-07T23:05:05,895 creating '/tmp/pip-modern-metadata-fsz94sm8/AnnoMate-0.0.1.dist-info' 2023-07-07T23:05:06,091 /tmp/pip-build-env-m96yf9e4/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T23:05:06,092 !! 2023-07-07T23:05:06,093 ******************************************************************************** 2023-07-07T23:05:06,093 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T23:05:06,094 versions. Please use the underscore name 'description_file' instead. 2023-07-07T23:05:06,095 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T23:05:06,095 or your builds will no longer be supported. 2023-07-07T23:05:06,096 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T23:05:06,097 ******************************************************************************** 2023-07-07T23:05:06,097 !! 2023-07-07T23:05:06,098 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T23:05:06,218 Preparing metadata (pyproject.toml): finished with status 'done' 2023-07-07T23:05:06,234 Source in /tmp/pip-wheel-mtzv91j2/annomate_73dff3bd059146c589033c612c6b8af1 has version 0.0.1, which satisfies requirement annomate==0.0.1 from https://files.pythonhosted.org/packages/85/2e/208a503bd83d596f5b1b1257723d76dc89e2bfb2b75c8290cd0c61ee55e8/AnnoMate-0.0.1.tar.gz 2023-07-07T23:05:06,236 Removed annomate==0.0.1 from https://files.pythonhosted.org/packages/85/2e/208a503bd83d596f5b1b1257723d76dc89e2bfb2b75c8290cd0c61ee55e8/AnnoMate-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-sx86ne8k' 2023-07-07T23:05:06,251 Created temporary directory: /tmp/pip-unpack-odzborl7 2023-07-07T23:05:06,252 Building wheels for collected packages: annomate 2023-07-07T23:05:06,261 Created temporary directory: /tmp/pip-wheel-o186h_op 2023-07-07T23:05:06,262 Destination directory: /tmp/pip-wheel-o186h_op 2023-07-07T23:05:06,267 Building wheel for annomate (pyproject.toml): started 2023-07-07T23:05:06,269 Running command Building wheel for annomate (pyproject.toml) 2023-07-07T23:05:07,571 running bdist_wheel 2023-07-07T23:05:07,644 running build 2023-07-07T23:05:07,645 running build_py 2023-07-07T23:05:07,662 creating build 2023-07-07T23:05:07,663 creating build/lib 2023-07-07T23:05:07,664 creating build/lib/AnnoMate 2023-07-07T23:05:07,666 copying ./AnnoMate/ReviewDataInterface.py -> build/lib/AnnoMate 2023-07-07T23:05:07,671 copying ./AnnoMate/Data.py -> build/lib/AnnoMate 2023-07-07T23:05:07,675 copying ./AnnoMate/ReviewDataApp.py -> build/lib/AnnoMate 2023-07-07T23:05:07,681 copying ./AnnoMate/__init__.py -> build/lib/AnnoMate 2023-07-07T23:05:07,684 copying ./AnnoMate/ReviewerTemplate.py -> build/lib/AnnoMate 2023-07-07T23:05:07,688 copying ./AnnoMate/AnnotationDisplayComponent.py -> build/lib/AnnoMate 2023-07-07T23:05:07,694 creating build/lib/AnnoMate/AppComponents 2023-07-07T23:05:07,695 copying ./AnnoMate/AppComponents/MutationTableComponent.py -> build/lib/AnnoMate/AppComponents 2023-07-07T23:05:07,700 copying ./AnnoMate/AppComponents/DataTableComponents.py -> build/lib/AnnoMate/AppComponents 2023-07-07T23:05:07,704 copying ./AnnoMate/AppComponents/PhylogicComponents.py -> build/lib/AnnoMate/AppComponents 2023-07-07T23:05:07,709 copying ./AnnoMate/AppComponents/CNVPlotComponent.py -> build/lib/AnnoMate/AppComponents 2023-07-07T23:05:07,713 copying ./AnnoMate/AppComponents/utils.py -> build/lib/AnnoMate/AppComponents 2023-07-07T23:05:07,717 copying ./AnnoMate/AppComponents/__init__.py -> build/lib/AnnoMate/AppComponents 2023-07-07T23:05:07,722 creating build/lib/AnnoMate/Reviewers 2023-07-07T23:05:07,724 copying ./AnnoMate/Reviewers/ExampleReviewer.py -> build/lib/AnnoMate/Reviewers 2023-07-07T23:05:07,729 copying ./AnnoMate/Reviewers/__init__.py -> build/lib/AnnoMate/Reviewers 2023-07-07T23:05:07,734 creating build/lib/AnnoMate/DataTypes 2023-07-07T23:05:07,737 copying ./AnnoMate/DataTypes/GenericData.py -> build/lib/AnnoMate/DataTypes 2023-07-07T23:05:07,741 copying ./AnnoMate/DataTypes/PatientSampleData.py -> build/lib/AnnoMate/DataTypes 2023-07-07T23:05:07,745 copying ./AnnoMate/DataTypes/__init__.py -> build/lib/AnnoMate/DataTypes 2023-07-07T23:05:07,750 creating build/lib/AnnoMate/AnnotationDisplayComponents 2023-07-07T23:05:07,752 copying ./AnnoMate/AnnotationDisplayComponents/__init__.py -> build/lib/AnnoMate/AnnotationDisplayComponents 2023-07-07T23:05:07,794 installing to build/bdist.linux-armv7l/wheel 2023-07-07T23:05:07,795 running install 2023-07-07T23:05:07,857 running install_lib 2023-07-07T23:05:07,872 creating build/bdist.linux-armv7l 2023-07-07T23:05:07,873 creating build/bdist.linux-armv7l/wheel 2023-07-07T23:05:07,877 creating build/bdist.linux-armv7l/wheel/AnnoMate 2023-07-07T23:05:07,880 creating build/bdist.linux-armv7l/wheel/AnnoMate/AppComponents 2023-07-07T23:05:07,882 copying build/lib/AnnoMate/AppComponents/MutationTableComponent.py -> build/bdist.linux-armv7l/wheel/AnnoMate/AppComponents 2023-07-07T23:05:07,887 copying build/lib/AnnoMate/AppComponents/DataTableComponents.py -> build/bdist.linux-armv7l/wheel/AnnoMate/AppComponents 2023-07-07T23:05:07,890 copying build/lib/AnnoMate/AppComponents/PhylogicComponents.py -> build/bdist.linux-armv7l/wheel/AnnoMate/AppComponents 2023-07-07T23:05:07,895 copying build/lib/AnnoMate/AppComponents/CNVPlotComponent.py -> build/bdist.linux-armv7l/wheel/AnnoMate/AppComponents 2023-07-07T23:05:07,900 copying build/lib/AnnoMate/AppComponents/utils.py -> build/bdist.linux-armv7l/wheel/AnnoMate/AppComponents 2023-07-07T23:05:07,904 copying build/lib/AnnoMate/AppComponents/__init__.py -> build/bdist.linux-armv7l/wheel/AnnoMate/AppComponents 2023-07-07T23:05:07,908 creating build/bdist.linux-armv7l/wheel/AnnoMate/Reviewers 2023-07-07T23:05:07,909 copying build/lib/AnnoMate/Reviewers/ExampleReviewer.py -> build/bdist.linux-armv7l/wheel/AnnoMate/Reviewers 2023-07-07T23:05:07,914 copying build/lib/AnnoMate/Reviewers/__init__.py -> build/bdist.linux-armv7l/wheel/AnnoMate/Reviewers 2023-07-07T23:05:07,917 copying build/lib/AnnoMate/ReviewDataInterface.py -> build/bdist.linux-armv7l/wheel/AnnoMate 2023-07-07T23:05:07,922 copying build/lib/AnnoMate/Data.py -> build/bdist.linux-armv7l/wheel/AnnoMate 2023-07-07T23:05:07,927 creating build/bdist.linux-armv7l/wheel/AnnoMate/DataTypes 2023-07-07T23:05:07,929 copying build/lib/AnnoMate/DataTypes/GenericData.py -> build/bdist.linux-armv7l/wheel/AnnoMate/DataTypes 2023-07-07T23:05:07,932 copying build/lib/AnnoMate/DataTypes/PatientSampleData.py -> build/bdist.linux-armv7l/wheel/AnnoMate/DataTypes 2023-07-07T23:05:07,936 copying build/lib/AnnoMate/DataTypes/__init__.py -> build/bdist.linux-armv7l/wheel/AnnoMate/DataTypes 2023-07-07T23:05:07,939 copying build/lib/AnnoMate/ReviewDataApp.py -> build/bdist.linux-armv7l/wheel/AnnoMate 2023-07-07T23:05:07,946 creating build/bdist.linux-armv7l/wheel/AnnoMate/AnnotationDisplayComponents 2023-07-07T23:05:07,948 copying build/lib/AnnoMate/AnnotationDisplayComponents/__init__.py -> build/bdist.linux-armv7l/wheel/AnnoMate/AnnotationDisplayComponents 2023-07-07T23:05:07,952 copying build/lib/AnnoMate/__init__.py -> build/bdist.linux-armv7l/wheel/AnnoMate 2023-07-07T23:05:07,955 copying build/lib/AnnoMate/ReviewerTemplate.py -> build/bdist.linux-armv7l/wheel/AnnoMate 2023-07-07T23:05:07,960 copying build/lib/AnnoMate/AnnotationDisplayComponent.py -> build/bdist.linux-armv7l/wheel/AnnoMate 2023-07-07T23:05:07,966 running install_egg_info 2023-07-07T23:05:08,018 running egg_info 2023-07-07T23:05:08,027 writing AnnoMate.egg-info/PKG-INFO 2023-07-07T23:05:08,032 writing dependency_links to AnnoMate.egg-info/dependency_links.txt 2023-07-07T23:05:08,036 writing requirements to AnnoMate.egg-info/requires.txt 2023-07-07T23:05:08,039 writing top-level names to AnnoMate.egg-info/top_level.txt 2023-07-07T23:05:08,061 reading manifest file 'AnnoMate.egg-info/SOURCES.txt' 2023-07-07T23:05:08,066 adding license file 'LICENSE.txt' 2023-07-07T23:05:08,073 writing manifest file 'AnnoMate.egg-info/SOURCES.txt' 2023-07-07T23:05:08,076 Copying AnnoMate.egg-info to build/bdist.linux-armv7l/wheel/AnnoMate-0.0.1-py3.7.egg-info 2023-07-07T23:05:08,095 running install_scripts 2023-07-07T23:05:08,139 creating build/bdist.linux-armv7l/wheel/AnnoMate-0.0.1.dist-info/WHEEL 2023-07-07T23:05:08,145 creating '/tmp/pip-wheel-o186h_op/.tmp-82jpq0p0/AnnoMate-0.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-07T23:05:08,150 adding 'AnnoMate/AnnotationDisplayComponent.py' 2023-07-07T23:05:08,154 adding 'AnnoMate/Data.py' 2023-07-07T23:05:08,166 adding 'AnnoMate/ReviewDataApp.py' 2023-07-07T23:05:08,171 adding 'AnnoMate/ReviewDataInterface.py' 2023-07-07T23:05:08,177 adding 'AnnoMate/ReviewerTemplate.py' 2023-07-07T23:05:08,180 adding 'AnnoMate/__init__.py' 2023-07-07T23:05:08,183 adding 'AnnoMate/AnnotationDisplayComponents/__init__.py' 2023-07-07T23:05:08,189 adding 'AnnoMate/AppComponents/CNVPlotComponent.py' 2023-07-07T23:05:08,192 adding 'AnnoMate/AppComponents/DataTableComponents.py' 2023-07-07T23:05:08,198 adding 'AnnoMate/AppComponents/MutationTableComponent.py' 2023-07-07T23:05:08,206 adding 'AnnoMate/AppComponents/PhylogicComponents.py' 2023-07-07T23:05:08,209 adding 'AnnoMate/AppComponents/__init__.py' 2023-07-07T23:05:08,212 adding 'AnnoMate/AppComponents/utils.py' 2023-07-07T23:05:08,216 adding 'AnnoMate/DataTypes/GenericData.py' 2023-07-07T23:05:08,218 adding 'AnnoMate/DataTypes/PatientSampleData.py' 2023-07-07T23:05:08,220 adding 'AnnoMate/DataTypes/__init__.py' 2023-07-07T23:05:08,224 adding 'AnnoMate/Reviewers/ExampleReviewer.py' 2023-07-07T23:05:08,227 adding 'AnnoMate/Reviewers/__init__.py' 2023-07-07T23:05:08,231 adding 'AnnoMate-0.0.1.dist-info/LICENSE.txt' 2023-07-07T23:05:08,234 adding 'AnnoMate-0.0.1.dist-info/METADATA' 2023-07-07T23:05:08,236 adding 'AnnoMate-0.0.1.dist-info/WHEEL' 2023-07-07T23:05:08,238 adding 'AnnoMate-0.0.1.dist-info/top_level.txt' 2023-07-07T23:05:08,241 adding 'AnnoMate-0.0.1.dist-info/RECORD' 2023-07-07T23:05:08,245 removing build/bdist.linux-armv7l/wheel 2023-07-07T23:05:08,263 /tmp/pip-build-env-m96yf9e4/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-07T23:05:08,264 !! 2023-07-07T23:05:08,265 ******************************************************************************** 2023-07-07T23:05:08,265 Usage of dash-separated 'description-file' will not be supported in future 2023-07-07T23:05:08,266 versions. Please use the underscore name 'description_file' instead. 2023-07-07T23:05:08,267 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-07T23:05:08,267 or your builds will no longer be supported. 2023-07-07T23:05:08,268 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-07T23:05:08,268 ******************************************************************************** 2023-07-07T23:05:08,269 !! 2023-07-07T23:05:08,270 opt = self.warn_dash_deprecation(opt, section) 2023-07-07T23:05:08,396 Building wheel for annomate (pyproject.toml): finished with status 'done' 2023-07-07T23:05:08,411 Created wheel for annomate: filename=AnnoMate-0.0.1-py3-none-any.whl size=46359 sha256=e157c16aa6a85d3b0eda381e2dcd84bc5974701c575dbf2bbb512e1560295e32 2023-07-07T23:05:08,413 Stored in directory: /tmp/pip-ephem-wheel-cache-93c8gd7u/wheels/ce/0a/36/0ddd1630ba6b8a2ab5f687d39988b5ab1a7d496efe487eb6ea 2023-07-07T23:05:08,441 Successfully built annomate 2023-07-07T23:05:08,452 Removed build tracker: '/tmp/pip-build-tracker-sx86ne8k'