2023-07-15T10:05:03,386 Created temporary directory: /tmp/pip-build-tracker-rg9r9wlw 2023-07-15T10:05:03,387 Initialized build tracking at /tmp/pip-build-tracker-rg9r9wlw 2023-07-15T10:05:03,387 Created build tracker: /tmp/pip-build-tracker-rg9r9wlw 2023-07-15T10:05:03,387 Entered build tracker: /tmp/pip-build-tracker-rg9r9wlw 2023-07-15T10:05:03,388 Created temporary directory: /tmp/pip-wheel-u1p_3dms 2023-07-15T10:05:03,391 Created temporary directory: /tmp/pip-ephem-wheel-cache-hwhb5ma2 2023-07-15T10:05:03,414 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-15T10:05:03,418 2 location(s) to search for versions of funid: 2023-07-15T10:05:03,418 * https://pypi.org/simple/funid/ 2023-07-15T10:05:03,418 * https://www.piwheels.org/simple/funid/ 2023-07-15T10:05:03,418 Fetching project page and analyzing links: https://pypi.org/simple/funid/ 2023-07-15T10:05:03,418 Getting page https://pypi.org/simple/funid/ 2023-07-15T10:05:03,420 Found index url https://pypi.org/simple/ 2023-07-15T10:05:03,472 Fetched page https://pypi.org/simple/funid/ as application/vnd.pypi.simple.v1+json 2023-07-15T10:05:03,479 Found link https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.0 2023-07-15T10:05:03,480 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/6a/08/2bccf4d17d6297e5c52bcba4eda5d5a1ed634eeb4c048a6a0492bf26f0e2/FunID-0.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,480 Found link https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.2 2023-07-15T10:05:03,481 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/77/47/e4d4394d3df8130a967d730b209ee08f0563e8c07d358e0938084ea2c238/FunID-0.3.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,481 Found link https://files.pythonhosted.org/packages/17/c7/bcd0e755fa5647dda4672ae9fd88f94d590c796d5312b2839b1e00beea1b/FunID-0.3.2.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.2.1 2023-07-15T10:05:03,482 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/20/65/dd3f11ff95c939d1894a81682d820f36a991bcf8f100b19982da1b3787ba/FunID-0.3.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,482 Found link https://files.pythonhosted.org/packages/48/62/211e51aabf536101577540574d126849837a43fa07e8c7c79ec79378bf30/FunID-0.3.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.0 2023-07-15T10:05:03,483 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/31/96/b453dc34699170a20a00aa02e9a0eeb511d75494b88bef72641a7f4aabe1/FunID-0.3.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,483 Found link https://files.pythonhosted.org/packages/00/60/4a6fee9144f0fd461c9e04e3f27ac9bbe36c2b7e9b04ddb9159a2e83481d/FunID-0.3.3.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.1 2023-07-15T10:05:03,484 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/27/55/5e0509c9b25f2d457da174c47bc4b191e7703d59ce32882ce03496ee35a7/FunID-0.3.4-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,484 Found link https://files.pythonhosted.org/packages/6d/2c/1a624a74aadc70a913197e0a7720007b2f952668ca497fdeeb9737699d8f/FunID-0.3.4.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.4 2023-07-15T10:05:03,484 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/5b/e0/d8b28a15adbb933eea238e2b955d474c3fb6aa73c904d6b372f56f30474c/FunID-0.3.5-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,485 Found link https://files.pythonhosted.org/packages/4e/f7/ff0895811673a7bd1da49a359d093810346659be5ac54140b2fbb5e199fc/FunID-0.3.5.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.5 2023-07-15T10:05:03,485 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/b7/27/c64985b174cbfa662e2109d838292a69d1669ad6a3a36294ee03ce81ef2a/FunID-0.3.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,486 Found link https://files.pythonhosted.org/packages/7c/19/cc41c29a0bc630bdc8a5ff93bb58cacc1ae756280b353b6b78d39c52bc85/FunID-0.3.6.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.6.1 2023-07-15T10:05:03,486 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/1f/44/739693947517bbc2e128df01ee142d72ee3358f7cc7daba4a3759fbf34bd/FunID-0.3.7-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,487 Found link https://files.pythonhosted.org/packages/a2/14/7ae571dd6e4b918e2a85ca1625481c5764c15f2f4ecebb64e738e4863c57/FunID-0.3.7.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.7 2023-07-15T10:05:03,487 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/89/e3/e48669d0fdeafd9b79bcd3b601ed05547df828c6f5a3cd0d733e28289738/FunID-0.3.8-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,487 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/f4/45/d1bc4761848b0f4ece4dc47311a91a7e85668eb49b3bbc86843e4508dbc1/FunID-0.3.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,488 Found link https://files.pythonhosted.org/packages/42/29/96fc938318a3c5b62670cb0efc021fea7f8257e825f9bc62aad02087bde5/FunID-0.3.8.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.8.1 2023-07-15T10:05:03,488 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/f9/05/5a5739948741051441923681ab8f41aeb24b4b67aee087e3911831cd397a/FunID-0.3.8.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,489 Found link https://files.pythonhosted.org/packages/4a/4a/3bf498c2707726c16177fb6d5e4c1fb6b942aa0f857378f22345cee709b9/FunID-0.3.8.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.8.2 2023-07-15T10:05:03,489 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/51/ac/f8561c5c3715309d959188f62cef662154c247362fa548893dda38582f08/FunID-0.3.9-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,490 Found link https://files.pythonhosted.org/packages/de/4c/ef736f335f2da1f2acbe16932bac1a03e2a46f7fd26e01f7d4a5b30d1a35/FunID-0.3.9.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.9 2023-07-15T10:05:03,490 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/26/59/dd98aa71ec91f80ff255b9177e7c3705f2352298dc8bb48bfa492d8304e3/FunID-0.3.10.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,490 Found link https://files.pythonhosted.org/packages/da/ef/a3b426feaf718c30c259c165124120c3192833b4c356a8a10efa909ac4b7/FunID-0.3.10.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.10.1 2023-07-15T10:05:03,491 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/17/b5/c3439f3af84951ffe85ed70190fdc02a33ab0e435a934a02c08f49505642/FunID-0.3.11-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,491 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/82/95/47d34ff9a0cc4a13e411dda8b40535efd54149fd259ef126246e6fd7ecdb/FunID-0.3.11.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,492 Found link https://files.pythonhosted.org/packages/84/c2/3278912b3d3b883be4b40dc072f732f708d5eb844046486762c6f9e7c772/FunID-0.3.11.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.11.0 2023-07-15T10:05:03,492 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/43/8c/a5bf3a512cb66117b0b8a83837a966dc2e3ce2c2bcb8570e5a35d3400392/FunID-0.3.11.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,492 Found link https://files.pythonhosted.org/packages/ba/8a/83e56e593445f58c6b6137886a90beaedabcc59274a95ff56e9d1fd8ecdb/FunID-0.3.11.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.11.1 2023-07-15T10:05:03,493 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/4c/68/28671e34d2c6358178f26a824fd61e89dfea1c3582366a9a5d27cfad6eef/FunID-0.3.12-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,493 Found link https://files.pythonhosted.org/packages/98/5a/615914c19c41ddb727d869f81f69307ee01450ebb57ae2316d7b467cdf28/FunID-0.3.12.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.12 2023-07-15T10:05:03,494 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/bf/6f/97fa36053eecbd72fb635943a6c76131fdc63e6817cb9b88a04e1fa7ac1f/FunID-0.3.12.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,494 Found link https://files.pythonhosted.org/packages/91/c1/dfbea8971785c0ab657008484777594dfce4ae2270f925f4d1b1e763108d/FunID-0.3.12.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.12.1 2023-07-15T10:05:03,494 Fetching project page and analyzing links: https://www.piwheels.org/simple/funid/ 2023-07-15T10:05:03,495 Getting page https://www.piwheels.org/simple/funid/ 2023-07-15T10:05:03,496 Found index url https://www.piwheels.org/simple/ 2023-07-15T10:05:03,652 Fetched page https://www.piwheels.org/simple/funid/ as text/html 2023-07-15T10:05:03,657 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.12-py3-none-any.whl#sha256=690331574875137d94139ddce24919dd1c94d97492b51b0f26b5d3b88f8c83d7 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,658 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.11.1-py3-none-any.whl#sha256=0b9e179e7311ba0893697757fa065752cf5b0629ba6f3f38e1025e335e74b3a8 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,658 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.11.0-py3-none-any.whl#sha256=6e60d72632ca2cf07c0ec2c903a5e044eef646e76848189b805d20736850ce33 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,658 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.10.1-py3-none-any.whl#sha256=7ac9e1373fc681d838576b55f51c104675d6fc3134a2d545da50145e18d08705 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,658 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.9-py3-none-any.whl#sha256=4431b10bd1c85b826c3ec29a0d6012ea6c189c62b3b9a78ca40cb341e5aba58a (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,659 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.8.2-py3-none-any.whl#sha256=06eb041030a5d98c5317f93863fa0bafdb3bac2e3225487b61109016d3ae8b89 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,659 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.8.1-py3-none-any.whl#sha256=e084fdf424ae421530d153e56c4a7a15849d59762617b101ba672265e1f83ae2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,659 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.7-py3-none-any.whl#sha256=696cfcf7f361ec4e0dd269ac3c0b30051c83fb75dd92ee7b8b0813f1b6c71f6c (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,659 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.6.1-py3-none-any.whl#sha256=9eddeab3cb03eb693bd4e1e231ab1076caa820fd6db88ef6c584b309cf87af4b (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,659 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.5-py3-none-any.whl#sha256=010daca223b2f36ea9811ebd48eb1afa57c9a0ac2f3a3f84f9b86603107db381 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,660 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.4-py3-none-any.whl#sha256=8f1161bfcbdbb5037a33076aa43c07292865101ee07e5370547b462c0e20cb67 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,660 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.1-py3-none-any.whl#sha256=3f87f5ecaa7ed8c6c00a3d76dc520e16293e70f38d878a85136fe28b96dcbbc5 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,660 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.0-py3-none-any.whl#sha256=dbca8d35c471b5a3c78fa7f5310bc475466d4bdc67ffff084e63baaf20a81154 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,660 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2.1-py3-none-any.whl#sha256=273f7078ce3ee94e0c5f6e862a8419c6ea6bd05ea1153174fba3ac5259d65f3a (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-15T10:05:03,660 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2-py3-none-any.whl#sha256=d0714cd7cd6b2c16ae6dc7120ae5ede922e049fab52e6d1a2a24c6e7075360be (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,661 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.0-py3-none-any.whl#sha256=e875a0092c43c61afaa8f12b92c67d0ae13e5a081dc0f494828474f50c67bfd2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-15T10:05:03,661 Skipping link: not a file: https://www.piwheels.org/simple/funid/ 2023-07-15T10:05:03,661 Skipping link: not a file: https://pypi.org/simple/funid/ 2023-07-15T10:05:03,681 Given no hashes to check 1 links for project 'funid': discarding no candidates 2023-07-15T10:05:03,698 Collecting funid==0.3.12.1 2023-07-15T10:05:03,700 Created temporary directory: /tmp/pip-unpack-edu_rxm6 2023-07-15T10:05:03,828 Downloading FunID-0.3.12.1.tar.gz (51.4 MB) 2023-07-15T10:05:16,428 Added funid==0.3.12.1 from https://files.pythonhosted.org/packages/91/c1/dfbea8971785c0ab657008484777594dfce4ae2270f925f4d1b1e763108d/FunID-0.3.12.1.tar.gz to build tracker '/tmp/pip-build-tracker-rg9r9wlw' 2023-07-15T10:05:16,430 Running setup.py (path:/tmp/pip-wheel-u1p_3dms/funid_c91dc4ff94c64540a2182d2eac4086b4/setup.py) egg_info for package funid 2023-07-15T10:05:16,430 Created temporary directory: /tmp/pip-pip-egg-info-o4lzyjon 2023-07-15T10:05:16,431 Preparing metadata (setup.py): started 2023-07-15T10:05:16,432 Running command python setup.py egg_info 2023-07-15T10:05:17,032 {'name': 'FunID', 'version': '0.3.12.1', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.10', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'psutil', 'PyQt5', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'scipy', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-07-15T10:05:17,033 running egg_info 2023-07-15T10:05:17,033 creating /tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info 2023-07-15T10:05:17,062 writing /tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info/PKG-INFO 2023-07-15T10:05:17,065 writing dependency_links to /tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info/dependency_links.txt 2023-07-15T10:05:17,066 writing entry points to /tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info/entry_points.txt 2023-07-15T10:05:17,068 writing requirements to /tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info/requires.txt 2023-07-15T10:05:17,069 writing top-level names to /tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info/top_level.txt 2023-07-15T10:05:17,071 writing manifest file '/tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info/SOURCES.txt' 2023-07-15T10:05:17,161 reading manifest file '/tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info/SOURCES.txt' 2023-07-15T10:05:17,162 adding license file 'LICENSE' 2023-07-15T10:05:17,165 writing manifest file '/tmp/pip-pip-egg-info-o4lzyjon/FunID.egg-info/SOURCES.txt' 2023-07-15T10:05:17,224 Preparing metadata (setup.py): finished with status 'done' 2023-07-15T10:05:17,230 Source in /tmp/pip-wheel-u1p_3dms/funid_c91dc4ff94c64540a2182d2eac4086b4 has version 0.3.12.1, which satisfies requirement funid==0.3.12.1 from https://files.pythonhosted.org/packages/91/c1/dfbea8971785c0ab657008484777594dfce4ae2270f925f4d1b1e763108d/FunID-0.3.12.1.tar.gz 2023-07-15T10:05:17,230 Removed funid==0.3.12.1 from https://files.pythonhosted.org/packages/91/c1/dfbea8971785c0ab657008484777594dfce4ae2270f925f4d1b1e763108d/FunID-0.3.12.1.tar.gz from build tracker '/tmp/pip-build-tracker-rg9r9wlw' 2023-07-15T10:05:17,237 Created temporary directory: /tmp/pip-unpack-wipzq_0k 2023-07-15T10:05:17,238 Building wheels for collected packages: funid 2023-07-15T10:05:17,242 Created temporary directory: /tmp/pip-wheel-7oz4x7xp 2023-07-15T10:05:17,242 Building wheel for funid (setup.py): started 2023-07-15T10:05:17,243 Destination directory: /tmp/pip-wheel-7oz4x7xp 2023-07-15T10:05:17,243 Running command python setup.py bdist_wheel 2023-07-15T10:05:17,662 {'name': 'FunID', 'version': '0.3.12.1', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.10', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'psutil', 'PyQt5', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'scipy', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-07-15T10:05:17,894 running bdist_wheel 2023-07-15T10:05:18,182 running build 2023-07-15T10:05:18,183 running build_py 2023-07-15T10:05:18,212 creating build 2023-07-15T10:05:18,213 creating build/lib 2023-07-15T10:05:18,214 creating build/lib/funid 2023-07-15T10:05:18,215 copying funid/main.py -> build/lib/funid 2023-07-15T10:05:18,217 copying funid/__init__.py -> build/lib/funid 2023-07-15T10:05:18,219 copying funid/FunID_GUI.py -> build/lib/funid 2023-07-15T10:05:18,223 creating build/lib/funid/src 2023-07-15T10:05:18,224 copying funid/src/tree.py -> build/lib/funid/src 2023-07-15T10:05:18,226 copying funid/src/dataset.py -> build/lib/funid/src 2023-07-15T10:05:18,229 copying funid/src/search.py -> build/lib/funid/src 2023-07-15T10:05:18,231 copying funid/src/initialize.py -> build/lib/funid/src 2023-07-15T10:05:18,233 copying funid/src/hasher.py -> build/lib/funid/src 2023-07-15T10:05:18,235 copying funid/src/ext.py -> build/lib/funid/src 2023-07-15T10:05:18,237 copying funid/src/logger.py -> build/lib/funid/src 2023-07-15T10:05:18,239 copying funid/src/trim.py -> build/lib/funid/src 2023-07-15T10:05:18,241 copying funid/src/tool.py -> build/lib/funid/src 2023-07-15T10:05:18,243 copying funid/src/reporter.py -> build/lib/funid/src 2023-07-15T10:05:18,246 copying funid/src/validate_option.py -> build/lib/funid/src 2023-07-15T10:05:18,250 copying funid/src/tree_interpretation_pipe.py -> build/lib/funid/src 2023-07-15T10:05:18,252 copying funid/src/tree_interpretation.py -> build/lib/funid/src 2023-07-15T10:05:18,255 copying funid/src/validation.py -> build/lib/funid/src 2023-07-15T10:05:18,257 copying funid/src/align.py -> build/lib/funid/src 2023-07-15T10:05:18,259 copying funid/src/ncbi.py -> build/lib/funid/src 2023-07-15T10:05:18,261 copying funid/src/save.py -> build/lib/funid/src 2023-07-15T10:05:18,263 copying funid/src/__init__.py -> build/lib/funid/src 2023-07-15T10:05:18,264 copying funid/src/patch.py -> build/lib/funid/src 2023-07-15T10:05:18,267 copying funid/src/manage_input.py -> build/lib/funid/src 2023-07-15T10:05:18,269 copying funid/src/modeltest.py -> build/lib/funid/src 2023-07-15T10:05:18,272 copying funid/src/concatenate.py -> build/lib/funid/src 2023-07-15T10:05:18,274 copying funid/src/opt_generator.py -> build/lib/funid/src 2023-07-15T10:05:18,276 copying funid/src/logics.py -> build/lib/funid/src 2023-07-15T10:05:18,278 copying funid/src/cluster.py -> build/lib/funid/src 2023-07-15T10:05:18,280 copying funid/src/command.py -> build/lib/funid/src 2023-07-15T10:05:18,283 creating build/lib/funid/data 2023-07-15T10:05:18,284 copying funid/data/__init__.py -> build/lib/funid/data 2023-07-15T10:05:18,287 running egg_info 2023-07-15T10:05:18,349 writing FunID.egg-info/PKG-INFO 2023-07-15T10:05:18,351 writing dependency_links to FunID.egg-info/dependency_links.txt 2023-07-15T10:05:18,353 writing entry points to FunID.egg-info/entry_points.txt 2023-07-15T10:05:18,354 writing requirements to FunID.egg-info/requires.txt 2023-07-15T10:05:18,355 writing top-level names to FunID.egg-info/top_level.txt 2023-07-15T10:05:18,392 reading manifest file 'FunID.egg-info/SOURCES.txt' 2023-07-15T10:05:18,402 adding license file 'LICENSE' 2023-07-15T10:05:18,409 writing manifest file 'FunID.egg-info/SOURCES.txt' 2023-07-15T10:05:18,412 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external' is absent from the `packages` configuration. 2023-07-15T10:05:18,413 !! 2023-07-15T10:05:18,413 ******************************************************************************** 2023-07-15T10:05:18,413 ############################ 2023-07-15T10:05:18,413 # Package would be ignored # 2023-07-15T10:05:18,413 ############################ 2023-07-15T10:05:18,413 Python recognizes 'funid.external' as an importable package[^1], 2023-07-15T10:05:18,413 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,414 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,414 package, please make sure that 'funid.external' is explicitly added 2023-07-15T10:05:18,414 to the `packages` configuration field. 2023-07-15T10:05:18,414 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,414 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,414 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,415 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,415 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,415 If you don't want 'funid.external' to be distributed and are 2023-07-15T10:05:18,415 already explicitly excluding 'funid.external' via 2023-07-15T10:05:18,415 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,415 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,416 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,416 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,416 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,416 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,416 even if it does not contain any `.py` files. 2023-07-15T10:05:18,417 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,417 directory, all directories are treated like packages. 2023-07-15T10:05:18,417 ******************************************************************************** 2023-07-15T10:05:18,417 !! 2023-07-15T10:05:18,417 check.warn(importable) 2023-07-15T10:05:18,417 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows' is absent from the `packages` configuration. 2023-07-15T10:05:18,418 !! 2023-07-15T10:05:18,418 ******************************************************************************** 2023-07-15T10:05:18,418 ############################ 2023-07-15T10:05:18,418 # Package would be ignored # 2023-07-15T10:05:18,418 ############################ 2023-07-15T10:05:18,418 Python recognizes 'funid.external.BLAST_Windows' as an importable package[^1], 2023-07-15T10:05:18,418 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,419 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,419 package, please make sure that 'funid.external.BLAST_Windows' is explicitly added 2023-07-15T10:05:18,419 to the `packages` configuration field. 2023-07-15T10:05:18,419 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,419 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,419 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,420 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,420 If you don't want 'funid.external.BLAST_Windows' to be distributed and are 2023-07-15T10:05:18,420 already explicitly excluding 'funid.external.BLAST_Windows' via 2023-07-15T10:05:18,420 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,420 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,421 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,421 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,421 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,421 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,421 even if it does not contain any `.py` files. 2023-07-15T10:05:18,421 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,422 directory, all directories are treated like packages. 2023-07-15T10:05:18,422 ******************************************************************************** 2023-07-15T10:05:18,422 !! 2023-07-15T10:05:18,422 check.warn(importable) 2023-07-15T10:05:18,422 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2023-07-15T10:05:18,422 !! 2023-07-15T10:05:18,422 ******************************************************************************** 2023-07-15T10:05:18,423 ############################ 2023-07-15T10:05:18,423 # Package would be ignored # 2023-07-15T10:05:18,423 ############################ 2023-07-15T10:05:18,423 Python recognizes 'funid.external.BLAST_Windows.bin' as an importable package[^1], 2023-07-15T10:05:18,423 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,423 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,423 package, please make sure that 'funid.external.BLAST_Windows.bin' is explicitly added 2023-07-15T10:05:18,424 to the `packages` configuration field. 2023-07-15T10:05:18,424 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,424 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,424 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,424 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,425 If you don't want 'funid.external.BLAST_Windows.bin' to be distributed and are 2023-07-15T10:05:18,425 already explicitly excluding 'funid.external.BLAST_Windows.bin' via 2023-07-15T10:05:18,425 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,425 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,425 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,425 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,425 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,426 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,426 even if it does not contain any `.py` files. 2023-07-15T10:05:18,426 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,426 directory, all directories are treated like packages. 2023-07-15T10:05:18,426 ******************************************************************************** 2023-07-15T10:05:18,426 !! 2023-07-15T10:05:18,427 check.warn(importable) 2023-07-15T10:05:18,427 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2023-07-15T10:05:18,427 !! 2023-07-15T10:05:18,427 ******************************************************************************** 2023-07-15T10:05:18,427 ############################ 2023-07-15T10:05:18,427 # Package would be ignored # 2023-07-15T10:05:18,427 ############################ 2023-07-15T10:05:18,428 Python recognizes 'funid.external.BLAST_Windows.doc' as an importable package[^1], 2023-07-15T10:05:18,428 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,428 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,428 package, please make sure that 'funid.external.BLAST_Windows.doc' is explicitly added 2023-07-15T10:05:18,428 to the `packages` configuration field. 2023-07-15T10:05:18,428 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,428 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,429 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,429 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,429 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,429 If you don't want 'funid.external.BLAST_Windows.doc' to be distributed and are 2023-07-15T10:05:18,429 already explicitly excluding 'funid.external.BLAST_Windows.doc' via 2023-07-15T10:05:18,429 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,430 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,430 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,430 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,430 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,430 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,431 even if it does not contain any `.py` files. 2023-07-15T10:05:18,431 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,431 directory, all directories are treated like packages. 2023-07-15T10:05:18,431 ******************************************************************************** 2023-07-15T10:05:18,431 !! 2023-07-15T10:05:18,431 check.warn(importable) 2023-07-15T10:05:18,431 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.FastTree_Windows' is absent from the `packages` configuration. 2023-07-15T10:05:18,431 !! 2023-07-15T10:05:18,432 ******************************************************************************** 2023-07-15T10:05:18,432 ############################ 2023-07-15T10:05:18,432 # Package would be ignored # 2023-07-15T10:05:18,432 ############################ 2023-07-15T10:05:18,432 Python recognizes 'funid.external.FastTree_Windows' as an importable package[^1], 2023-07-15T10:05:18,432 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,432 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,432 package, please make sure that 'funid.external.FastTree_Windows' is explicitly added 2023-07-15T10:05:18,433 to the `packages` configuration field. 2023-07-15T10:05:18,433 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,433 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,433 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,433 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,433 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,434 If you don't want 'funid.external.FastTree_Windows' to be distributed and are 2023-07-15T10:05:18,434 already explicitly excluding 'funid.external.FastTree_Windows' via 2023-07-15T10:05:18,434 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,434 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,434 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,434 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,435 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,435 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,435 even if it does not contain any `.py` files. 2023-07-15T10:05:18,435 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,435 directory, all directories are treated like packages. 2023-07-15T10:05:18,435 ******************************************************************************** 2023-07-15T10:05:18,436 !! 2023-07-15T10:05:18,436 check.warn(importable) 2023-07-15T10:05:18,436 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.RAxML_Windows' is absent from the `packages` configuration. 2023-07-15T10:05:18,436 !! 2023-07-15T10:05:18,436 ******************************************************************************** 2023-07-15T10:05:18,436 ############################ 2023-07-15T10:05:18,437 # Package would be ignored # 2023-07-15T10:05:18,437 ############################ 2023-07-15T10:05:18,437 Python recognizes 'funid.external.RAxML_Windows' as an importable package[^1], 2023-07-15T10:05:18,437 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,437 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,437 package, please make sure that 'funid.external.RAxML_Windows' is explicitly added 2023-07-15T10:05:18,437 to the `packages` configuration field. 2023-07-15T10:05:18,438 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,438 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,438 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,438 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,439 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,439 If you don't want 'funid.external.RAxML_Windows' to be distributed and are 2023-07-15T10:05:18,439 already explicitly excluding 'funid.external.RAxML_Windows' via 2023-07-15T10:05:18,439 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,439 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,439 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,440 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,440 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,440 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,440 even if it does not contain any `.py` files. 2023-07-15T10:05:18,440 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,441 directory, all directories are treated like packages. 2023-07-15T10:05:18,441 ******************************************************************************** 2023-07-15T10:05:18,441 !! 2023-07-15T10:05:18,441 check.warn(importable) 2023-07-15T10:05:18,441 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows' is absent from the `packages` configuration. 2023-07-15T10:05:18,441 !! 2023-07-15T10:05:18,442 ******************************************************************************** 2023-07-15T10:05:18,442 ############################ 2023-07-15T10:05:18,442 # Package would be ignored # 2023-07-15T10:05:18,442 ############################ 2023-07-15T10:05:18,442 Python recognizes 'funid.external.mmseqs_Windows' as an importable package[^1], 2023-07-15T10:05:18,442 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,442 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,443 package, please make sure that 'funid.external.mmseqs_Windows' is explicitly added 2023-07-15T10:05:18,443 to the `packages` configuration field. 2023-07-15T10:05:18,443 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,443 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,444 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,445 If you don't want 'funid.external.mmseqs_Windows' to be distributed and are 2023-07-15T10:05:18,445 already explicitly excluding 'funid.external.mmseqs_Windows' via 2023-07-15T10:05:18,445 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,445 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,445 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,446 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,446 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,446 even if it does not contain any `.py` files. 2023-07-15T10:05:18,446 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,446 directory, all directories are treated like packages. 2023-07-15T10:05:18,447 ******************************************************************************** 2023-07-15T10:05:18,447 !! 2023-07-15T10:05:18,447 check.warn(importable) 2023-07-15T10:05:18,447 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2023-07-15T10:05:18,447 !! 2023-07-15T10:05:18,447 ******************************************************************************** 2023-07-15T10:05:18,447 ############################ 2023-07-15T10:05:18,448 # Package would be ignored # 2023-07-15T10:05:18,448 ############################ 2023-07-15T10:05:18,448 Python recognizes 'funid.external.mmseqs_Windows.bin' as an importable package[^1], 2023-07-15T10:05:18,448 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,448 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,448 package, please make sure that 'funid.external.mmseqs_Windows.bin' is explicitly added 2023-07-15T10:05:18,448 to the `packages` configuration field. 2023-07-15T10:05:18,449 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,449 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,449 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,449 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,449 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,450 If you don't want 'funid.external.mmseqs_Windows.bin' to be distributed and are 2023-07-15T10:05:18,450 already explicitly excluding 'funid.external.mmseqs_Windows.bin' via 2023-07-15T10:05:18,450 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,450 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,450 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,450 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,451 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,451 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,451 even if it does not contain any `.py` files. 2023-07-15T10:05:18,451 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,451 directory, all directories are treated like packages. 2023-07-15T10:05:18,452 ******************************************************************************** 2023-07-15T10:05:18,452 !! 2023-07-15T10:05:18,452 check.warn(importable) 2023-07-15T10:05:18,452 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2023-07-15T10:05:18,452 !! 2023-07-15T10:05:18,452 ******************************************************************************** 2023-07-15T10:05:18,453 ############################ 2023-07-15T10:05:18,453 # Package would be ignored # 2023-07-15T10:05:18,453 ############################ 2023-07-15T10:05:18,453 Python recognizes 'funid.external.mmseqs_Windows.examples' as an importable package[^1], 2023-07-15T10:05:18,453 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,453 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,453 package, please make sure that 'funid.external.mmseqs_Windows.examples' is explicitly added 2023-07-15T10:05:18,453 to the `packages` configuration field. 2023-07-15T10:05:18,454 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,454 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,454 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,454 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,454 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,455 If you don't want 'funid.external.mmseqs_Windows.examples' to be distributed and are 2023-07-15T10:05:18,455 already explicitly excluding 'funid.external.mmseqs_Windows.examples' via 2023-07-15T10:05:18,455 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,455 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,455 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,455 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,456 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,456 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,457 even if it does not contain any `.py` files. 2023-07-15T10:05:18,457 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,457 directory, all directories are treated like packages. 2023-07-15T10:05:18,457 ******************************************************************************** 2023-07-15T10:05:18,457 !! 2023-07-15T10:05:18,457 check.warn(importable) 2023-07-15T10:05:18,457 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2023-07-15T10:05:18,458 !! 2023-07-15T10:05:18,458 ******************************************************************************** 2023-07-15T10:05:18,458 ############################ 2023-07-15T10:05:18,458 # Package would be ignored # 2023-07-15T10:05:18,458 ############################ 2023-07-15T10:05:18,458 Python recognizes 'funid.external.mmseqs_Windows.matrices' as an importable package[^1], 2023-07-15T10:05:18,458 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,459 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,459 package, please make sure that 'funid.external.mmseqs_Windows.matrices' is explicitly added 2023-07-15T10:05:18,459 to the `packages` configuration field. 2023-07-15T10:05:18,459 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,459 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,459 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,460 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,460 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,460 If you don't want 'funid.external.mmseqs_Windows.matrices' to be distributed and are 2023-07-15T10:05:18,460 already explicitly excluding 'funid.external.mmseqs_Windows.matrices' via 2023-07-15T10:05:18,460 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,460 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,461 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,461 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,461 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,462 even if it does not contain any `.py` files. 2023-07-15T10:05:18,462 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,462 directory, all directories are treated like packages. 2023-07-15T10:05:18,462 ******************************************************************************** 2023-07-15T10:05:18,462 !! 2023-07-15T10:05:18,462 check.warn(importable) 2023-07-15T10:05:18,462 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2023-07-15T10:05:18,462 !! 2023-07-15T10:05:18,463 ******************************************************************************** 2023-07-15T10:05:18,463 ############################ 2023-07-15T10:05:18,463 # Package would be ignored # 2023-07-15T10:05:18,463 ############################ 2023-07-15T10:05:18,463 Python recognizes 'funid.external.mmseqs_Windows.util' as an importable package[^1], 2023-07-15T10:05:18,463 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,464 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,464 package, please make sure that 'funid.external.mmseqs_Windows.util' is explicitly added 2023-07-15T10:05:18,464 to the `packages` configuration field. 2023-07-15T10:05:18,464 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,464 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,464 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,464 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,465 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,465 If you don't want 'funid.external.mmseqs_Windows.util' to be distributed and are 2023-07-15T10:05:18,465 already explicitly excluding 'funid.external.mmseqs_Windows.util' via 2023-07-15T10:05:18,465 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,465 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,465 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,466 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,466 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,466 even if it does not contain any `.py` files. 2023-07-15T10:05:18,466 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,467 directory, all directories are treated like packages. 2023-07-15T10:05:18,467 ******************************************************************************** 2023-07-15T10:05:18,467 !! 2023-07-15T10:05:18,467 check.warn(importable) 2023-07-15T10:05:18,467 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium' is absent from the `packages` configuration. 2023-07-15T10:05:18,467 !! 2023-07-15T10:05:18,468 ******************************************************************************** 2023-07-15T10:05:18,468 ############################ 2023-07-15T10:05:18,468 # Package would be ignored # 2023-07-15T10:05:18,468 ############################ 2023-07-15T10:05:18,468 Python recognizes 'funid.test_dataset.penicillium' as an importable package[^1], 2023-07-15T10:05:18,468 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,468 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,468 package, please make sure that 'funid.test_dataset.penicillium' is explicitly added 2023-07-15T10:05:18,469 to the `packages` configuration field. 2023-07-15T10:05:18,469 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,469 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,469 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,469 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,470 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,470 If you don't want 'funid.test_dataset.penicillium' to be distributed and are 2023-07-15T10:05:18,470 already explicitly excluding 'funid.test_dataset.penicillium' via 2023-07-15T10:05:18,470 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,470 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,470 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,471 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,471 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,471 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,471 even if it does not contain any `.py` files. 2023-07-15T10:05:18,471 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,471 directory, all directories are treated like packages. 2023-07-15T10:05:18,472 ******************************************************************************** 2023-07-15T10:05:18,472 !! 2023-07-15T10:05:18,472 check.warn(importable) 2023-07-15T10:05:18,472 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2023-07-15T10:05:18,472 !! 2023-07-15T10:05:18,472 ******************************************************************************** 2023-07-15T10:05:18,472 ############################ 2023-07-15T10:05:18,473 # Package would be ignored # 2023-07-15T10:05:18,473 ############################ 2023-07-15T10:05:18,473 Python recognizes 'funid.test_dataset.penicillium.DB' as an importable package[^1], 2023-07-15T10:05:18,473 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,473 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,473 package, please make sure that 'funid.test_dataset.penicillium.DB' is explicitly added 2023-07-15T10:05:18,473 to the `packages` configuration field. 2023-07-15T10:05:18,474 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,474 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,474 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,474 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,475 If you don't want 'funid.test_dataset.penicillium.DB' to be distributed and are 2023-07-15T10:05:18,475 already explicitly excluding 'funid.test_dataset.penicillium.DB' via 2023-07-15T10:05:18,475 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,475 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,475 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,475 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,476 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,476 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,476 even if it does not contain any `.py` files. 2023-07-15T10:05:18,476 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,476 directory, all directories are treated like packages. 2023-07-15T10:05:18,476 ******************************************************************************** 2023-07-15T10:05:18,477 !! 2023-07-15T10:05:18,477 check.warn(importable) 2023-07-15T10:05:18,477 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2023-07-15T10:05:18,477 !! 2023-07-15T10:05:18,477 ******************************************************************************** 2023-07-15T10:05:18,477 ############################ 2023-07-15T10:05:18,477 # Package would be ignored # 2023-07-15T10:05:18,478 ############################ 2023-07-15T10:05:18,478 Python recognizes 'funid.test_dataset.penicillium.Query' as an importable package[^1], 2023-07-15T10:05:18,478 but it is absent from setuptools' `packages` configuration. 2023-07-15T10:05:18,478 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-15T10:05:18,478 package, please make sure that 'funid.test_dataset.penicillium.Query' is explicitly added 2023-07-15T10:05:18,478 to the `packages` configuration field. 2023-07-15T10:05:18,479 Alternatively, you can also rely on setuptools' discovery methods 2023-07-15T10:05:18,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-15T10:05:18,479 instead of `find_packages(...)`/`find:`). 2023-07-15T10:05:18,479 You can read more about "package discovery" on setuptools documentation page: 2023-07-15T10:05:18,479 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-15T10:05:18,480 If you don't want 'funid.test_dataset.penicillium.Query' to be distributed and are 2023-07-15T10:05:18,480 already explicitly excluding 'funid.test_dataset.penicillium.Query' via 2023-07-15T10:05:18,480 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-15T10:05:18,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-15T10:05:18,480 combination with a more fine grained `package-data` configuration. 2023-07-15T10:05:18,480 You can read more about "package data files" on setuptools documentation page: 2023-07-15T10:05:18,480 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-15T10:05:18,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-15T10:05:18,481 even if it does not contain any `.py` files. 2023-07-15T10:05:18,481 On the other hand, currently there is no concept of package data 2023-07-15T10:05:18,481 directory, all directories are treated like packages. 2023-07-15T10:05:18,481 ******************************************************************************** 2023-07-15T10:05:18,481 !! 2023-07-15T10:05:18,482 check.warn(importable) 2023-07-15T10:05:18,482 creating build/lib/funid/external 2023-07-15T10:05:18,482 copying funid/external/MAFFT_LICENSE -> build/lib/funid/external 2023-07-15T10:05:18,482 copying funid/external/MAFFT_Windows.zip -> build/lib/funid/external 2023-07-15T10:05:18,827 copying funid/external/__init__.py -> build/lib/funid/external 2023-07-15T10:05:18,829 creating build/lib/funid/external/BLAST_Windows 2023-07-15T10:05:18,830 copying funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funid/external/BLAST_Windows 2023-07-15T10:05:18,833 creating build/lib/funid/external/BLAST_Windows/bin 2023-07-15T10:05:18,834 copying funid/external/BLAST_Windows/bin/blastn.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-07-15T10:05:19,074 copying funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funid/external/BLAST_Windows/bin 2023-07-15T10:05:19,076 copying funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funid/external/BLAST_Windows/bin 2023-07-15T10:05:19,079 copying funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-07-15T10:05:19,083 copying funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-07-15T10:05:19,262 copying funid/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funid/external/BLAST_Windows/bin 2023-07-15T10:05:19,267 copying funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-07-15T10:05:19,269 creating build/lib/funid/external/BLAST_Windows/doc 2023-07-15T10:05:19,270 copying funid/external/BLAST_Windows/doc/README.txt -> build/lib/funid/external/BLAST_Windows/doc 2023-07-15T10:05:19,272 creating build/lib/funid/external/FastTree_Windows 2023-07-15T10:05:19,273 copying funid/external/FastTree_Windows/FastTree.exe -> build/lib/funid/external/FastTree_Windows 2023-07-15T10:05:19,281 creating build/lib/funid/external/Gblocks_Windows_0.91b 2023-07-15T10:05:19,282 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-15T10:05:19,283 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-15T10:05:19,289 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-15T10:05:19,291 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-15T10:05:19,294 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-15T10:05:19,295 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-15T10:05:19,298 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:19,300 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:19,302 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:19,305 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:19,308 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:19,310 creating build/lib/funid/external/RAxML_Windows 2023-07-15T10:05:19,311 copying funid/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funid/external/RAxML_Windows 2023-07-15T10:05:19,314 copying funid/external/RAxML_Windows/README -> build/lib/funid/external/RAxML_Windows 2023-07-15T10:05:19,317 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-07-15T10:05:19,343 creating build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:19,344 copying funid/external/iqtree-2.1.3-Windows/example.cf -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:19,386 copying funid/external/iqtree-2.1.3-Windows/example.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:19,389 copying funid/external/iqtree-2.1.3-Windows/example.phy -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:19,392 copying funid/external/iqtree-2.1.3-Windows/models.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:19,397 creating build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-15T10:05:19,398 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-15T10:05:19,537 copying funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-15T10:05:19,556 creating build/lib/funid/external/mmseqs_Windows 2023-07-15T10:05:19,558 copying funid/external/mmseqs_Windows/LICENSE.md -> build/lib/funid/external/mmseqs_Windows 2023-07-15T10:05:19,561 copying funid/external/mmseqs_Windows/README.md -> build/lib/funid/external/mmseqs_Windows 2023-07-15T10:05:19,563 copying funid/external/mmseqs_Windows/mmseqs.bat -> build/lib/funid/external/mmseqs_Windows 2023-07-15T10:05:19,565 creating build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,567 copying funid/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,578 copying funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,581 copying funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,585 copying funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,592 copying funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,623 copying funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,675 copying funid/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,679 copying funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:19,870 creating build/lib/funid/external/mmseqs_Windows/examples 2023-07-15T10:05:19,871 copying funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funid/external/mmseqs_Windows/examples 2023-07-15T10:05:19,877 creating build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,878 copying funid/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,881 copying funid/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,883 copying funid/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,885 copying funid/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,887 copying funid/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,890 copying funid/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,892 copying funid/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,894 copying funid/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,896 copying funid/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,898 copying funid/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,901 copying funid/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,903 copying funid/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,905 copying funid/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,907 copying funid/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,910 copying funid/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,912 copying funid/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,914 copying funid/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,916 copying funid/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,919 copying funid/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,921 copying funid/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,923 copying funid/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,925 copying funid/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,927 copying funid/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,930 copying funid/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,932 copying funid/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,935 copying funid/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,937 copying funid/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,939 copying funid/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,941 copying funid/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,944 copying funid/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,946 copying funid/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,948 copying funid/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,950 copying funid/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,952 copying funid/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,955 copying funid/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,957 copying funid/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,959 copying funid/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,962 copying funid/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,964 copying funid/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,966 copying funid/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,969 copying funid/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,971 copying funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:19,973 creating build/lib/funid/external/mmseqs_Windows/util 2023-07-15T10:05:19,974 copying funid/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funid/external/mmseqs_Windows/util 2023-07-15T10:05:19,976 creating build/lib/funid/external/trimal.v1.2rev59 2023-07-15T10:05:19,977 creating build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:19,978 copying funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:19,980 copying funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:19,983 copying funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:19,986 copying funid/external/trimal.v1.2rev59/trimAl/README -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:19,988 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-15T10:05:19,989 copying funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-15T10:05:20,001 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,002 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,005 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,009 copying funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,012 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,014 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,016 copying funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,020 copying funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,022 copying funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,025 copying funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,029 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,032 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,034 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,037 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,039 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,042 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,044 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,047 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,049 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,052 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,054 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,057 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,060 copying funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:20,062 copying funid/data/Option_manager.xlsx -> build/lib/funid/data 2023-07-15T10:05:20,065 copying funid/data/genus_line.txt -> build/lib/funid/data 2023-07-15T10:05:20,068 creating build/lib/funid/test_dataset 2023-07-15T10:05:20,069 creating build/lib/funid/test_dataset/penicillium 2023-07-15T10:05:20,070 copying funid/test_dataset/penicillium/Options.config -> build/lib/funid/test_dataset/penicillium 2023-07-15T10:05:20,072 copying funid/test_dataset/penicillium/preset.yaml -> build/lib/funid/test_dataset/penicillium 2023-07-15T10:05:20,074 creating build/lib/funid/test_dataset/penicillium/DB 2023-07-15T10:05:20,075 copying funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funid/test_dataset/penicillium/DB 2023-07-15T10:05:20,084 creating build/lib/funid/test_dataset/penicillium/Query 2023-07-15T10:05:20,085 copying funid/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funid/test_dataset/penicillium/Query 2023-07-15T10:05:20,088 creating build/lib/funid/preset 2023-07-15T10:05:20,089 copying funid/preset/accurate.yaml -> build/lib/funid/preset 2023-07-15T10:05:20,091 copying funid/preset/fast.yaml -> build/lib/funid/preset 2023-07-15T10:05:20,127 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-15T10:05:20,127 !! 2023-07-15T10:05:20,127 ******************************************************************************** 2023-07-15T10:05:20,127 Please avoid running ``setup.py`` directly. 2023-07-15T10:05:20,127 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-15T10:05:20,128 other standards-based tools. 2023-07-15T10:05:20,128 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-15T10:05:20,128 ******************************************************************************** 2023-07-15T10:05:20,128 !! 2023-07-15T10:05:20,128 self.initialize_options() 2023-07-15T10:05:20,155 installing to build/bdist.linux-armv7l/wheel 2023-07-15T10:05:20,156 running install 2023-07-15T10:05:20,180 running install_lib 2023-07-15T10:05:20,209 creating build/bdist.linux-armv7l 2023-07-15T10:05:20,209 creating build/bdist.linux-armv7l/wheel 2023-07-15T10:05:20,211 creating build/bdist.linux-armv7l/wheel/funid 2023-07-15T10:05:20,212 creating build/bdist.linux-armv7l/wheel/funid/external 2023-07-15T10:05:20,213 copying build/lib/funid/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-15T10:05:20,586 copying build/lib/funid/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-15T10:05:20,590 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-15T10:05:20,591 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-07-15T10:05:20,592 copying build/lib/funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-07-15T10:05:20,598 copying build/lib/funid/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-15T10:05:20,601 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-07-15T10:05:20,603 copying build/lib/funid/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-07-15T10:05:20,606 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,607 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,609 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,611 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,613 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,615 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,617 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,620 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,622 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,624 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,626 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,628 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,634 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,637 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,639 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,641 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,643 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,645 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,647 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,649 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,651 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,653 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,655 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,657 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,659 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,661 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,663 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,665 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,667 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,669 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,671 copying build/lib/funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,673 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,675 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,677 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,679 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,681 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,683 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,685 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,687 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,689 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,691 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,693 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,695 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-15T10:05:20,697 copying build/lib/funid/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-15T10:05:20,700 copying build/lib/funid/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-15T10:05:20,703 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:20,704 copying build/lib/funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:20,707 copying build/lib/funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:20,766 copying build/lib/funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:20,796 copying build/lib/funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:20,802 copying build/lib/funid/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:20,814 copying build/lib/funid/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:20,818 copying build/lib/funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:20,999 copying build/lib/funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-15T10:05:21,003 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59 2023-07-15T10:05:21,004 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:21,005 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:21,007 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,008 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,011 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,013 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,015 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,018 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,022 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,024 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,027 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,030 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,033 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,034 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,037 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,039 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,041 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,043 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,045 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,047 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,049 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,051 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,053 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,055 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,057 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-15T10:05:21,060 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/README -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:21,061 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:21,063 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-15T10:05:21,066 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-15T10:05:21,067 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-15T10:05:21,090 creating build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-07-15T10:05:21,091 copying build/lib/funid/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-07-15T10:05:21,099 creating build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-15T10:05:21,099 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-15T10:05:21,125 copying build/lib/funid/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-15T10:05:21,127 copying build/lib/funid/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-15T10:05:21,130 copying build/lib/funid/external/__init__.py -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-15T10:05:21,132 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-07-15T10:05:21,133 copying build/lib/funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-07-15T10:05:21,136 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-15T10:05:21,137 copying build/lib/funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-15T10:05:21,322 copying build/lib/funid/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-15T10:05:21,327 copying build/lib/funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-15T10:05:21,330 copying build/lib/funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-15T10:05:21,333 copying build/lib/funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-15T10:05:21,335 copying build/lib/funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-15T10:05:21,338 copying build/lib/funid/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-15T10:05:21,587 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-07-15T10:05:21,588 copying build/lib/funid/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-07-15T10:05:21,590 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b 2023-07-15T10:05:21,591 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-15T10:05:21,592 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:21,593 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:21,596 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:21,597 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:21,600 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-15T10:05:21,603 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-15T10:05:21,603 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-15T10:05:21,606 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-15T10:05:21,608 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-15T10:05:21,614 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-15T10:05:21,617 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:21,617 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:21,619 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.cf -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:21,655 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-15T10:05:21,656 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-15T10:05:21,807 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-15T10:05:21,826 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.phy -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:21,829 copying build/lib/funid/external/iqtree-2.1.3-Windows/models.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-15T10:05:21,834 creating build/bdist.linux-armv7l/wheel/funid/data 2023-07-15T10:05:21,835 copying build/lib/funid/data/__init__.py -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-15T10:05:21,837 copying build/lib/funid/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-15T10:05:21,840 copying build/lib/funid/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-15T10:05:21,844 creating build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,845 copying build/lib/funid/src/tree.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,847 copying build/lib/funid/src/dataset.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,850 copying build/lib/funid/src/search.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,853 copying build/lib/funid/src/initialize.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,856 copying build/lib/funid/src/hasher.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,858 copying build/lib/funid/src/ext.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,861 copying build/lib/funid/src/logger.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,863 copying build/lib/funid/src/trim.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,865 copying build/lib/funid/src/tool.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,868 copying build/lib/funid/src/reporter.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,871 copying build/lib/funid/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,875 copying build/lib/funid/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,877 copying build/lib/funid/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,881 copying build/lib/funid/src/validation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,883 copying build/lib/funid/src/align.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,885 copying build/lib/funid/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,887 copying build/lib/funid/src/save.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,890 copying build/lib/funid/src/__init__.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,891 copying build/lib/funid/src/patch.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,894 copying build/lib/funid/src/manage_input.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,897 copying build/lib/funid/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,899 copying build/lib/funid/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,902 copying build/lib/funid/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,904 copying build/lib/funid/src/logics.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,906 copying build/lib/funid/src/cluster.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,909 copying build/lib/funid/src/command.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-15T10:05:21,912 copying build/lib/funid/main.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-15T10:05:21,914 copying build/lib/funid/__init__.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-15T10:05:21,916 copying build/lib/funid/FunID_GUI.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-15T10:05:21,919 creating build/bdist.linux-armv7l/wheel/funid/preset 2023-07-15T10:05:21,921 copying build/lib/funid/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-07-15T10:05:21,923 copying build/lib/funid/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-07-15T10:05:21,926 creating build/bdist.linux-armv7l/wheel/funid/test_dataset 2023-07-15T10:05:21,927 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-15T10:05:21,929 copying build/lib/funid/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-15T10:05:21,931 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-07-15T10:05:21,933 copying build/lib/funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-07-15T10:05:21,942 copying build/lib/funid/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-15T10:05:21,945 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-07-15T10:05:21,946 copying build/lib/funid/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-07-15T10:05:21,949 running install_egg_info 2023-07-15T10:05:21,980 Copying FunID.egg-info to build/bdist.linux-armv7l/wheel/FunID-0.3.12.1-py3.9.egg-info 2023-07-15T10:05:21,994 running install_scripts 2023-07-15T10:05:22,017 creating build/bdist.linux-armv7l/wheel/FunID-0.3.12.1.dist-info/WHEEL 2023-07-15T10:05:22,020 creating '/tmp/pip-wheel-7oz4x7xp/FunID-0.3.12.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-15T10:05:22,025 adding 'funid/FunID_GUI.py' 2023-07-15T10:05:22,027 adding 'funid/__init__.py' 2023-07-15T10:05:22,029 adding 'funid/main.py' 2023-07-15T10:05:22,033 adding 'funid/data/Option_manager.xlsx' 2023-07-15T10:05:22,035 adding 'funid/data/__init__.py' 2023-07-15T10:05:22,043 adding 'funid/data/genus_line.txt' 2023-07-15T10:05:22,050 adding 'funid/external/MAFFT_LICENSE' 2023-07-15T10:05:25,148 adding 'funid/external/MAFFT_Windows.zip' 2023-07-15T10:05:25,316 adding 'funid/external/__init__.py' 2023-07-15T10:05:25,326 adding 'funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2023-07-15T10:05:28,293 adding 'funid/external/BLAST_Windows/bin/blastn.exe' 2023-07-15T10:05:28,399 adding 'funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2023-07-15T10:05:28,401 adding 'funid/external/BLAST_Windows/bin/get_species_taxids.sh' 2023-07-15T10:05:28,406 adding 'funid/external/BLAST_Windows/bin/legacy_blast.pl' 2023-07-15T10:05:30,466 adding 'funid/external/BLAST_Windows/bin/makeblastdb.exe' 2023-07-15T10:05:30,565 adding 'funid/external/BLAST_Windows/bin/nghttp2.dll' 2023-07-15T10:05:30,570 adding 'funid/external/BLAST_Windows/bin/update_blastdb.pl' 2023-07-15T10:05:30,572 adding 'funid/external/BLAST_Windows/doc/README.txt' 2023-07-15T10:05:30,629 adding 'funid/external/FastTree_Windows/FastTree.exe' 2023-07-15T10:05:30,670 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2023-07-15T10:05:30,674 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2023-07-15T10:05:30,675 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2023-07-15T10:05:30,681 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2023-07-15T10:05:30,684 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2023-07-15T10:05:30,686 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2023-07-15T10:05:30,687 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2023-07-15T10:05:30,690 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2023-07-15T10:05:30,697 adding 'funid/external/RAxML_Windows/GPL-3.0.txt' 2023-07-15T10:05:30,699 adding 'funid/external/RAxML_Windows/README' 2023-07-15T10:05:30,992 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2023-07-15T10:05:31,086 adding 'funid/external/iqtree-2.1.3-Windows/example.cf' 2023-07-15T10:05:31,101 adding 'funid/external/iqtree-2.1.3-Windows/example.nex' 2023-07-15T10:05:31,114 adding 'funid/external/iqtree-2.1.3-Windows/example.phy' 2023-07-15T10:05:31,144 adding 'funid/external/iqtree-2.1.3-Windows/models.nex' 2023-07-15T10:05:32,868 adding 'funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe' 2023-07-15T10:05:33,119 adding 'funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll' 2023-07-15T10:05:33,133 adding 'funid/external/mmseqs_Windows/LICENSE.md' 2023-07-15T10:05:33,136 adding 'funid/external/mmseqs_Windows/README.md' 2023-07-15T10:05:33,137 adding 'funid/external/mmseqs_Windows/mmseqs.bat' 2023-07-15T10:05:33,272 adding 'funid/external/mmseqs_Windows/bin/busybox.exe' 2023-07-15T10:05:33,287 adding 'funid/external/mmseqs_Windows/bin/cygbz2-1.dll' 2023-07-15T10:05:33,301 adding 'funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2023-07-15T10:05:33,344 adding 'funid/external/mmseqs_Windows/bin/cyggomp-1.dll' 2023-07-15T10:05:33,608 adding 'funid/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2023-07-15T10:05:34,210 adding 'funid/external/mmseqs_Windows/bin/cygwin1.dll' 2023-07-15T10:05:34,248 adding 'funid/external/mmseqs_Windows/bin/cygz.dll' 2023-07-15T10:05:37,533 adding 'funid/external/mmseqs_Windows/bin/mmseqs.exe' 2023-07-15T10:05:37,657 adding 'funid/external/mmseqs_Windows/examples/QUERY.fasta' 2023-07-15T10:05:37,662 adding 'funid/external/mmseqs_Windows/matrices/PAM10.out' 2023-07-15T10:05:37,663 adding 'funid/external/mmseqs_Windows/matrices/PAM100.out' 2023-07-15T10:05:37,665 adding 'funid/external/mmseqs_Windows/matrices/PAM110.out' 2023-07-15T10:05:37,667 adding 'funid/external/mmseqs_Windows/matrices/PAM120.out' 2023-07-15T10:05:37,668 adding 'funid/external/mmseqs_Windows/matrices/PAM130.out' 2023-07-15T10:05:37,670 adding 'funid/external/mmseqs_Windows/matrices/PAM140.out' 2023-07-15T10:05:37,672 adding 'funid/external/mmseqs_Windows/matrices/PAM150.out' 2023-07-15T10:05:37,674 adding 'funid/external/mmseqs_Windows/matrices/PAM160.out' 2023-07-15T10:05:37,675 adding 'funid/external/mmseqs_Windows/matrices/PAM170.out' 2023-07-15T10:05:37,677 adding 'funid/external/mmseqs_Windows/matrices/PAM180.out' 2023-07-15T10:05:37,678 adding 'funid/external/mmseqs_Windows/matrices/PAM190.out' 2023-07-15T10:05:37,680 adding 'funid/external/mmseqs_Windows/matrices/PAM20.out' 2023-07-15T10:05:37,682 adding 'funid/external/mmseqs_Windows/matrices/PAM30.out' 2023-07-15T10:05:37,683 adding 'funid/external/mmseqs_Windows/matrices/PAM40.out' 2023-07-15T10:05:37,685 adding 'funid/external/mmseqs_Windows/matrices/PAM50.out' 2023-07-15T10:05:37,687 adding 'funid/external/mmseqs_Windows/matrices/PAM60.out' 2023-07-15T10:05:37,688 adding 'funid/external/mmseqs_Windows/matrices/PAM70.out' 2023-07-15T10:05:37,690 adding 'funid/external/mmseqs_Windows/matrices/PAM80.out' 2023-07-15T10:05:37,691 adding 'funid/external/mmseqs_Windows/matrices/PAM90.out' 2023-07-15T10:05:37,693 adding 'funid/external/mmseqs_Windows/matrices/VTML10.out' 2023-07-15T10:05:37,695 adding 'funid/external/mmseqs_Windows/matrices/VTML120.out' 2023-07-15T10:05:37,696 adding 'funid/external/mmseqs_Windows/matrices/VTML160.out' 2023-07-15T10:05:37,698 adding 'funid/external/mmseqs_Windows/matrices/VTML20.out' 2023-07-15T10:05:37,700 adding 'funid/external/mmseqs_Windows/matrices/VTML40.out' 2023-07-15T10:05:37,702 adding 'funid/external/mmseqs_Windows/matrices/VTML80.out' 2023-07-15T10:05:37,703 adding 'funid/external/mmseqs_Windows/matrices/blosum100.out' 2023-07-15T10:05:37,705 adding 'funid/external/mmseqs_Windows/matrices/blosum30.out' 2023-07-15T10:05:37,707 adding 'funid/external/mmseqs_Windows/matrices/blosum35.out' 2023-07-15T10:05:37,709 adding 'funid/external/mmseqs_Windows/matrices/blosum40.out' 2023-07-15T10:05:37,711 adding 'funid/external/mmseqs_Windows/matrices/blosum45.out' 2023-07-15T10:05:37,713 adding 'funid/external/mmseqs_Windows/matrices/blosum50.out' 2023-07-15T10:05:37,715 adding 'funid/external/mmseqs_Windows/matrices/blosum55.out' 2023-07-15T10:05:37,716 adding 'funid/external/mmseqs_Windows/matrices/blosum60.out' 2023-07-15T10:05:37,718 adding 'funid/external/mmseqs_Windows/matrices/blosum62.out' 2023-07-15T10:05:37,720 adding 'funid/external/mmseqs_Windows/matrices/blosum65.out' 2023-07-15T10:05:37,722 adding 'funid/external/mmseqs_Windows/matrices/blosum70.out' 2023-07-15T10:05:37,724 adding 'funid/external/mmseqs_Windows/matrices/blosum75.out' 2023-07-15T10:05:37,726 adding 'funid/external/mmseqs_Windows/matrices/blosum80.out' 2023-07-15T10:05:37,727 adding 'funid/external/mmseqs_Windows/matrices/blosum85.out' 2023-07-15T10:05:37,729 adding 'funid/external/mmseqs_Windows/matrices/blosum90.out' 2023-07-15T10:05:37,731 adding 'funid/external/mmseqs_Windows/matrices/blosum95.out' 2023-07-15T10:05:37,732 adding 'funid/external/mmseqs_Windows/matrices/nucleotide.out' 2023-07-15T10:05:37,734 adding 'funid/external/mmseqs_Windows/util/bash-completion.sh' 2023-07-15T10:05:37,737 adding 'funid/external/trimal.v1.2rev59/trimAl/AUTHORS' 2023-07-15T10:05:37,738 adding 'funid/external/trimal.v1.2rev59/trimAl/CHANGELOG' 2023-07-15T10:05:37,745 adding 'funid/external/trimal.v1.2rev59/trimAl/LICENSE' 2023-07-15T10:05:37,747 adding 'funid/external/trimal.v1.2rev59/trimAl/README' 2023-07-15T10:05:37,838 adding 'funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe' 2023-07-15T10:05:37,850 adding 'funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp' 2023-07-15T10:05:37,853 adding 'funid/external/trimal.v1.2rev59/trimAl/source/alignment.h' 2023-07-15T10:05:37,855 adding 'funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp' 2023-07-15T10:05:37,857 adding 'funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp' 2023-07-15T10:05:37,859 adding 'funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h' 2023-07-15T10:05:37,864 adding 'funid/external/trimal.v1.2rev59/trimAl/source/main.cpp' 2023-07-15T10:05:37,866 adding 'funid/external/trimal.v1.2rev59/trimAl/source/makefile' 2023-07-15T10:05:37,868 adding 'funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp' 2023-07-15T10:05:37,873 adding 'funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp' 2023-07-15T10:05:37,875 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp' 2023-07-15T10:05:37,879 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h' 2023-07-15T10:05:37,881 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp' 2023-07-15T10:05:37,883 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h' 2023-07-15T10:05:37,886 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp' 2023-07-15T10:05:37,888 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h' 2023-07-15T10:05:37,889 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp' 2023-07-15T10:05:37,891 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h' 2023-07-15T10:05:37,894 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp' 2023-07-15T10:05:37,896 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h' 2023-07-15T10:05:37,898 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp' 2023-07-15T10:05:37,899 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.h' 2023-07-15T10:05:37,901 adding 'funid/external/trimal.v1.2rev59/trimAl/source/values.h' 2023-07-15T10:05:37,903 adding 'funid/preset/accurate.yaml' 2023-07-15T10:05:37,905 adding 'funid/preset/fast.yaml' 2023-07-15T10:05:37,907 adding 'funid/src/__init__.py' 2023-07-15T10:05:37,909 adding 'funid/src/align.py' 2023-07-15T10:05:37,912 adding 'funid/src/cluster.py' 2023-07-15T10:05:37,914 adding 'funid/src/command.py' 2023-07-15T10:05:37,916 adding 'funid/src/concatenate.py' 2023-07-15T10:05:37,919 adding 'funid/src/dataset.py' 2023-07-15T10:05:37,922 adding 'funid/src/ext.py' 2023-07-15T10:05:37,924 adding 'funid/src/hasher.py' 2023-07-15T10:05:37,926 adding 'funid/src/initialize.py' 2023-07-15T10:05:37,928 adding 'funid/src/logger.py' 2023-07-15T10:05:37,929 adding 'funid/src/logics.py' 2023-07-15T10:05:37,933 adding 'funid/src/manage_input.py' 2023-07-15T10:05:37,935 adding 'funid/src/modeltest.py' 2023-07-15T10:05:37,937 adding 'funid/src/ncbi.py' 2023-07-15T10:05:37,939 adding 'funid/src/opt_generator.py' 2023-07-15T10:05:37,941 adding 'funid/src/patch.py' 2023-07-15T10:05:37,945 adding 'funid/src/reporter.py' 2023-07-15T10:05:37,947 adding 'funid/src/save.py' 2023-07-15T10:05:37,950 adding 'funid/src/search.py' 2023-07-15T10:05:37,952 adding 'funid/src/tool.py' 2023-07-15T10:05:37,954 adding 'funid/src/tree.py' 2023-07-15T10:05:37,959 adding 'funid/src/tree_interpretation.py' 2023-07-15T10:05:37,962 adding 'funid/src/tree_interpretation_pipe.py' 2023-07-15T10:05:37,964 adding 'funid/src/trim.py' 2023-07-15T10:05:37,970 adding 'funid/src/validate_option.py' 2023-07-15T10:05:37,972 adding 'funid/src/validation.py' 2023-07-15T10:05:37,975 adding 'funid/test_dataset/penicillium/Options.config' 2023-07-15T10:05:37,976 adding 'funid/test_dataset/penicillium/preset.yaml' 2023-07-15T10:05:38,014 adding 'funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2023-07-15T10:05:38,022 adding 'funid/test_dataset/penicillium/Query/Query.xlsx' 2023-07-15T10:05:38,029 adding 'FunID-0.3.12.1.dist-info/LICENSE' 2023-07-15T10:05:38,030 adding 'FunID-0.3.12.1.dist-info/METADATA' 2023-07-15T10:05:38,032 adding 'FunID-0.3.12.1.dist-info/WHEEL' 2023-07-15T10:05:38,033 adding 'FunID-0.3.12.1.dist-info/entry_points.txt' 2023-07-15T10:05:38,034 adding 'FunID-0.3.12.1.dist-info/top_level.txt' 2023-07-15T10:05:38,037 adding 'FunID-0.3.12.1.dist-info/RECORD' 2023-07-15T10:05:38,523 removing build/bdist.linux-armv7l/wheel 2023-07-15T10:05:39,001 Building wheel for funid (setup.py): finished with status 'done' 2023-07-15T10:05:39,510 Created wheel for funid: filename=FunID-0.3.12.1-py3-none-any.whl size=51527451 sha256=8f79e49afdf8a5b830c592f0a40819950291c7f9812bfc0afc57ec4244e0e14c 2023-07-15T10:05:39,511 Stored in directory: /tmp/pip-ephem-wheel-cache-hwhb5ma2/wheels/7b/bb/06/111f3766e81f8a9b5ec5fcf44493912073191980a7fe187317 2023-07-15T10:05:39,543 Successfully built funid 2023-07-15T10:05:40,736 Removed build tracker: '/tmp/pip-build-tracker-rg9r9wlw'