2023-07-17T13:11:10,905 Created temporary directory: /tmp/pip-build-tracker-7x052l5u 2023-07-17T13:11:10,906 Initialized build tracking at /tmp/pip-build-tracker-7x052l5u 2023-07-17T13:11:10,906 Created build tracker: /tmp/pip-build-tracker-7x052l5u 2023-07-17T13:11:10,906 Entered build tracker: /tmp/pip-build-tracker-7x052l5u 2023-07-17T13:11:10,907 Created temporary directory: /tmp/pip-wheel-vpalsam5 2023-07-17T13:11:10,910 Created temporary directory: /tmp/pip-ephem-wheel-cache-m6iu478n 2023-07-17T13:11:10,933 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-17T13:11:10,936 2 location(s) to search for versions of pdbeccdutils: 2023-07-17T13:11:10,936 * https://pypi.org/simple/pdbeccdutils/ 2023-07-17T13:11:10,936 * https://www.piwheels.org/simple/pdbeccdutils/ 2023-07-17T13:11:10,936 Fetching project page and analyzing links: https://pypi.org/simple/pdbeccdutils/ 2023-07-17T13:11:10,937 Getting page https://pypi.org/simple/pdbeccdutils/ 2023-07-17T13:11:10,939 Found index url https://pypi.org/simple/ 2023-07-17T13:11:10,999 Fetched page https://pypi.org/simple/pdbeccdutils/ as application/vnd.pypi.simple.v1+json 2023-07-17T13:11:11,003 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/a6/6b/1b0cbfa7ebeac876b55eb4a141bcacd9b831221ff0fccd8d10882071f444/pdbeccdutils-0.5.5-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,003 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/04/62/f38851eebf9825f8452f976361057f14d5e61b3facdcd94b85c37b279c31/pdbeccdutils-0.5.6-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,003 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/1b/74/321adb72be60f4f3ee1b9c1d8d3bf795b392d009871546fb12cba3a26eab/pdbeccdutils-0.5.7-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,004 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/be/b7/61cec4f8e7b1d3571e33c74e8fa496796f46a6c050156f89793a14967164/pdbeccdutils-0.5.8-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,004 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/50/dd/a74e7dfbd69b37aab02e80fe138bfe5dec69f01d87fe97686d25f9b2e32f/pdbeccdutils-0.5.9-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,004 Found link https://files.pythonhosted.org/packages/9b/f3/1cb8eecc84e504d7a6c1353f9309fe7acbe7b04166d4f2736a4466eec4f9/pdbeccdutils-0.5.9.macosx-10.9-x86_64.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6), version: 0.5.9.macosx-10.9-x86_64 2023-07-17T13:11:11,005 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/b9/61/fa3c814f95f62ce4e16481addc99e130b1caf40bd284694e08991f3cbfb8/pdbeccdutils-0.5.10-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,005 Found link https://files.pythonhosted.org/packages/53/43/fefcd9bee928240865de7c999dc1774fb466a36d4e9f913549914e4bb52d/pdbeccdutils-0.5.10.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6), version: 0.5.10 2023-07-17T13:11:11,006 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/de/ff/db86fe950961d94a287b249c3835fdfac171b62d83d65360e77d5a3ed78a/pdbeccdutils-0.6-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,006 Found link https://files.pythonhosted.org/packages/1d/a2/3d33a24da0d50795b893737072b4eec136d8722d311151ca771279e9d8d6/pdbeccdutils-0.6.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6), version: 0.6 2023-07-17T13:11:11,007 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/f5/02/750e8d07244bc5f6714cfb1b460cb4302b2d969188685cd67c63243c25cb/pdbeccdutils-0.7.0-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,007 Found link https://files.pythonhosted.org/packages/8e/77/12136a229df427cd00454d329b3cd2c5d04433304758e8d9754bca455c17/pdbeccdutils-0.7.0.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6), version: 0.7.0 2023-07-17T13:11:11,007 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/bb/cf/5deb57b364e520d095943bc3c4408367e651b77f64ba176f2070ab8877dd/pdbeccdutils-0.7.1-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,008 Found link https://files.pythonhosted.org/packages/83/63/ea04fd8f2260be1b15df89b1d409e4363c24727f89027993fe3563dc351c/pdbeccdutils-0.7.1.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6), version: 0.7.1 2023-07-17T13:11:11,008 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/4b/59/7111f32ddbd9145b4107db3f8bb2bbef822e79e026f8287e8f49fd622b24/pdbeccdutils-0.7.2-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,009 Found link https://files.pythonhosted.org/packages/8a/5a/14c349acf5400490f6c222647f7461188e4cc809150a86c4c7d8064442b2/pdbeccdutils-0.7.2.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.6), version: 0.7.2 2023-07-17T13:11:11,009 Skipping link: No binaries permitted for pdbeccdutils: https://files.pythonhosted.org/packages/2f/db/29fb2127bfea91853fe6d80c6fea2f3b800f5a7485770ecb335cc9d2d666/pdbeccdutils-0.8.0-py3-none-any.whl (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9) 2023-07-17T13:11:11,010 Found link https://files.pythonhosted.org/packages/3a/0b/3c2f715c07c12c7de1779485ee379b905932527681f298c3c9d9dacd4109/pdbeccdutils-0.8.0.tar.gz (from https://pypi.org/simple/pdbeccdutils/) (requires-python:>=3.9), version: 0.8.0 2023-07-17T13:11:11,010 Fetching project page and analyzing links: https://www.piwheels.org/simple/pdbeccdutils/ 2023-07-17T13:11:11,010 Getting page https://www.piwheels.org/simple/pdbeccdutils/ 2023-07-17T13:11:11,011 Found index url https://www.piwheels.org/simple/ 2023-07-17T13:11:11,236 Fetched page https://www.piwheels.org/simple/pdbeccdutils/ as text/html 2023-07-17T13:11:11,239 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.7.2-py3-none-any.whl#sha256=cee73f6d5d7691504b43e067e47e40e2e9f65c2877f7d5cb1ebee83072563892 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,239 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.7.1-py3-none-any.whl#sha256=229e2d18aefd68bb687af6a1a1f24c7c235880bca55bfc6e94acd3623ff60bf9 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,239 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.7.0-py3-none-any.whl#sha256=23019671e99e1eff739f76e1c461c42851855d415e3cf8e72c511cf08aac0b91 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,239 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.6-py3-none-any.whl#sha256=9794eaa2ae664987b4c775e3a10992bcf07f170e2b9281d01414e77a90fc4dc8 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,240 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.5.10-py3-none-any.whl#sha256=6167688099c1971017ef069b3522ab646207bf1ae4f1f69ead9825db98c0b5d2 (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,240 Skipping link: No binaries permitted for pdbeccdutils: https://www.piwheels.org/simple/pdbeccdutils/pdbeccdutils-0.5.9-py3-none-any.whl#sha256=4371f5464ab054be5c99fdf769d2cfe4de21da32930f157566a553f1020ac74a (from https://www.piwheels.org/simple/pdbeccdutils/) (requires-python:>=3.6) 2023-07-17T13:11:11,240 Skipping link: not a file: https://www.piwheels.org/simple/pdbeccdutils/ 2023-07-17T13:11:11,240 Skipping link: not a file: https://pypi.org/simple/pdbeccdutils/ 2023-07-17T13:11:11,259 Given no hashes to check 1 links for project 'pdbeccdutils': discarding no candidates 2023-07-17T13:11:11,276 Collecting pdbeccdutils==0.8.0 2023-07-17T13:11:11,278 Created temporary directory: /tmp/pip-unpack-vyo8s2xd 2023-07-17T13:11:11,417 Downloading pdbeccdutils-0.8.0.tar.gz (120 kB) 2023-07-17T13:11:11,617 Added pdbeccdutils==0.8.0 from https://files.pythonhosted.org/packages/3a/0b/3c2f715c07c12c7de1779485ee379b905932527681f298c3c9d9dacd4109/pdbeccdutils-0.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-7x052l5u' 2023-07-17T13:11:11,619 Running setup.py (path:/tmp/pip-wheel-vpalsam5/pdbeccdutils_1235f01e4b8744eba077f9ca2c6c4a58/setup.py) egg_info for package pdbeccdutils 2023-07-17T13:11:11,620 Created temporary directory: /tmp/pip-pip-egg-info-si01l65k 2023-07-17T13:11:11,620 Preparing metadata (setup.py): started 2023-07-17T13:11:11,621 Running command python setup.py egg_info 2023-07-17T13:11:12,277 running egg_info 2023-07-17T13:11:12,278 creating /tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info 2023-07-17T13:11:12,308 writing /tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info/PKG-INFO 2023-07-17T13:11:12,311 writing dependency_links to /tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info/dependency_links.txt 2023-07-17T13:11:12,313 writing entry points to /tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info/entry_points.txt 2023-07-17T13:11:12,314 writing requirements to /tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info/requires.txt 2023-07-17T13:11:12,315 writing top-level names to /tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info/top_level.txt 2023-07-17T13:11:12,317 writing manifest file '/tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info/SOURCES.txt' 2023-07-17T13:11:12,408 reading manifest file '/tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info/SOURCES.txt' 2023-07-17T13:11:12,410 reading manifest template 'MANIFEST.in' 2023-07-17T13:11:12,412 adding license file 'LICENSE' 2023-07-17T13:11:12,416 writing manifest file '/tmp/pip-pip-egg-info-si01l65k/pdbeccdutils.egg-info/SOURCES.txt' 2023-07-17T13:11:12,476 Preparing metadata (setup.py): finished with status 'done' 2023-07-17T13:11:12,482 Source in /tmp/pip-wheel-vpalsam5/pdbeccdutils_1235f01e4b8744eba077f9ca2c6c4a58 has version 0.8.0, which satisfies requirement pdbeccdutils==0.8.0 from https://files.pythonhosted.org/packages/3a/0b/3c2f715c07c12c7de1779485ee379b905932527681f298c3c9d9dacd4109/pdbeccdutils-0.8.0.tar.gz 2023-07-17T13:11:12,483 Removed pdbeccdutils==0.8.0 from https://files.pythonhosted.org/packages/3a/0b/3c2f715c07c12c7de1779485ee379b905932527681f298c3c9d9dacd4109/pdbeccdutils-0.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-7x052l5u' 2023-07-17T13:11:12,490 Created temporary directory: /tmp/pip-unpack-ii9ugw6p 2023-07-17T13:11:12,490 Building wheels for collected packages: pdbeccdutils 2023-07-17T13:11:12,494 Created temporary directory: /tmp/pip-wheel-ms_0jsa_ 2023-07-17T13:11:12,495 Building wheel for pdbeccdutils (setup.py): started 2023-07-17T13:11:12,496 Destination directory: /tmp/pip-wheel-ms_0jsa_ 2023-07-17T13:11:12,496 Running command python setup.py bdist_wheel 2023-07-17T13:11:13,150 running bdist_wheel 2023-07-17T13:11:13,435 running build 2023-07-17T13:11:13,435 running build_py 2023-07-17T13:11:13,465 creating build 2023-07-17T13:11:13,465 creating build/lib 2023-07-17T13:11:13,466 creating build/lib/doc 2023-07-17T13:11:13,467 copying doc/conf.py -> build/lib/doc 2023-07-17T13:11:13,470 creating build/lib/pdbeccdutils 2023-07-17T13:11:13,471 copying pdbeccdutils/__init__.py -> build/lib/pdbeccdutils 2023-07-17T13:11:13,474 creating build/lib/pdbeccdutils/utils 2023-07-17T13:11:13,474 copying pdbeccdutils/utils/web_services.py -> build/lib/pdbeccdutils/utils 2023-07-17T13:11:13,477 copying pdbeccdutils/utils/config.py -> build/lib/pdbeccdutils/utils 2023-07-17T13:11:13,479 copying pdbeccdutils/utils/pubchem_downloader.py -> build/lib/pdbeccdutils/utils 2023-07-17T13:11:13,481 copying pdbeccdutils/utils/__init__.py -> build/lib/pdbeccdutils/utils 2023-07-17T13:11:13,483 creating build/lib/pdbeccdutils/computations 2023-07-17T13:11:13,483 copying pdbeccdutils/computations/parity_method.py -> build/lib/pdbeccdutils/computations 2023-07-17T13:11:13,485 copying pdbeccdutils/computations/__init__.py -> build/lib/pdbeccdutils/computations 2023-07-17T13:11:13,488 creating build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,489 copying pdbeccdutils/tests/test_web_services.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,491 copying pdbeccdutils/tests/test_helper_methods.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,492 copying pdbeccdutils/tests/test_clc_reader.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,494 copying pdbeccdutils/tests/test_fragment_library.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,496 copying pdbeccdutils/tests/test_load_eoh_cif.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,498 copying pdbeccdutils/tests/test_property_generation.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,499 copying pdbeccdutils/tests/tst_utilities.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,501 copying pdbeccdutils/tests/test_file_writing.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,503 copying pdbeccdutils/tests/test_process_components_cif_cli.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,505 copying pdbeccdutils/tests/test_boundmolecule_cli.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,507 copying pdbeccdutils/tests/test_scaffold_generation.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,509 copying pdbeccdutils/tests/test_write_img.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,511 copying pdbeccdutils/tests/conftest.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,513 copying pdbeccdutils/tests/test_residue.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,515 copying pdbeccdutils/tests/test_rdkit_fixtures.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,517 copying pdbeccdutils/tests/test_inchi_key_matches.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,519 copying pdbeccdutils/tests/test_clc_writer.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,520 copying pdbeccdutils/tests/test_bound_molecule.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,522 copying pdbeccdutils/tests/test_parity.py -> build/lib/pdbeccdutils/tests 2023-07-17T13:11:13,525 creating build/lib/pdbeccdutils/core 2023-07-17T13:11:13,526 copying pdbeccdutils/core/ccd_writer.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,529 copying pdbeccdutils/core/component.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,532 copying pdbeccdutils/core/boundmolecule.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,534 copying pdbeccdutils/core/models.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,537 copying pdbeccdutils/core/exceptions.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,538 copying pdbeccdutils/core/fragment_library.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,540 copying pdbeccdutils/core/clc_writer.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,542 copying pdbeccdutils/core/prd_reader.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,545 copying pdbeccdutils/core/depictions.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,547 copying pdbeccdutils/core/ccd_reader.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,549 copying pdbeccdutils/core/__init__.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,551 copying pdbeccdutils/core/prd_writer.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,553 copying pdbeccdutils/core/clc_reader.py -> build/lib/pdbeccdutils/core 2023-07-17T13:11:13,556 creating build/lib/pdbeccdutils/helpers 2023-07-17T13:11:13,557 copying pdbeccdutils/helpers/cif_tools.py -> build/lib/pdbeccdutils/helpers 2023-07-17T13:11:13,559 copying pdbeccdutils/helpers/conversions.py -> build/lib/pdbeccdutils/helpers 2023-07-17T13:11:13,561 copying pdbeccdutils/helpers/helper.py -> build/lib/pdbeccdutils/helpers 2023-07-17T13:11:13,563 copying pdbeccdutils/helpers/mol_tools.py -> build/lib/pdbeccdutils/helpers 2023-07-17T13:11:13,565 copying pdbeccdutils/helpers/__init__.py -> build/lib/pdbeccdutils/helpers 2023-07-17T13:11:13,567 copying pdbeccdutils/helpers/drawing.py -> build/lib/pdbeccdutils/helpers 2023-07-17T13:11:13,569 creating build/lib/pdbeccdutils/scripts 2023-07-17T13:11:13,570 copying pdbeccdutils/scripts/process_components_cif_cli.py -> build/lib/pdbeccdutils/scripts 2023-07-17T13:11:13,573 copying pdbeccdutils/scripts/boundmolecule_cli.py -> build/lib/pdbeccdutils/scripts 2023-07-17T13:11:13,575 copying pdbeccdutils/scripts/__init__.py -> build/lib/pdbeccdutils/scripts 2023-07-17T13:11:13,577 copying pdbeccdutils/scripts/setup_pubchem_library_cli.py -> build/lib/pdbeccdutils/scripts 2023-07-17T13:11:13,579 running egg_info 2023-07-17T13:11:13,640 writing pdbeccdutils.egg-info/PKG-INFO 2023-07-17T13:11:13,642 writing dependency_links to pdbeccdutils.egg-info/dependency_links.txt 2023-07-17T13:11:13,644 writing entry points to pdbeccdutils.egg-info/entry_points.txt 2023-07-17T13:11:13,646 writing requirements to pdbeccdutils.egg-info/requires.txt 2023-07-17T13:11:13,647 writing top-level names to pdbeccdutils.egg-info/top_level.txt 2023-07-17T13:11:13,681 reading manifest file 'pdbeccdutils.egg-info/SOURCES.txt' 2023-07-17T13:11:13,685 reading manifest template 'MANIFEST.in' 2023-07-17T13:11:13,687 adding license file 'LICENSE' 2023-07-17T13:11:13,692 writing manifest file 'pdbeccdutils.egg-info/SOURCES.txt' 2023-07-17T13:11:13,696 creating build/lib/pdbeccdutils/data 2023-07-17T13:11:13,697 copying pdbeccdutils/data/fragment_library.tsv -> build/lib/pdbeccdutils/data 2023-07-17T13:11:13,704 creating build/lib/pdbeccdutils/data/coordgen_templates 2023-07-17T13:11:13,705 copying pdbeccdutils/data/coordgen_templates/templates.mae -> build/lib/pdbeccdutils/data/coordgen_templates 2023-07-17T13:11:13,708 creating build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,709 copying pdbeccdutils/data/general_templates/adamantane.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,711 copying pdbeccdutils/data/general_templates/cube.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,713 copying pdbeccdutils/data/general_templates/decahydrocorrin.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,716 copying pdbeccdutils/data/general_templates/hem.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,718 copying pdbeccdutils/data/general_templates/nonbornane.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,720 copying pdbeccdutils/data/general_templates/phorbine.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,723 copying pdbeccdutils/data/general_templates/porphin.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,725 copying pdbeccdutils/data/general_templates/porphycene.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,728 copying pdbeccdutils/data/general_templates/ru_complex.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,730 copying pdbeccdutils/data/general_templates/ru_complex2.sdf -> build/lib/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,767 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-17T13:11:13,768 !! 2023-07-17T13:11:13,768 ******************************************************************************** 2023-07-17T13:11:13,768 Please avoid running ``setup.py`` directly. 2023-07-17T13:11:13,768 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-17T13:11:13,768 other standards-based tools. 2023-07-17T13:11:13,769 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-17T13:11:13,769 ******************************************************************************** 2023-07-17T13:11:13,769 !! 2023-07-17T13:11:13,769 self.initialize_options() 2023-07-17T13:11:13,796 installing to build/bdist.linux-armv7l/wheel 2023-07-17T13:11:13,797 running install 2023-07-17T13:11:13,823 running install_lib 2023-07-17T13:11:13,851 creating build/bdist.linux-armv7l 2023-07-17T13:11:13,852 creating build/bdist.linux-armv7l/wheel 2023-07-17T13:11:13,853 creating build/bdist.linux-armv7l/wheel/doc 2023-07-17T13:11:13,855 copying build/lib/doc/conf.py -> build/bdist.linux-armv7l/wheel/doc 2023-07-17T13:11:13,858 creating build/bdist.linux-armv7l/wheel/pdbeccdutils 2023-07-17T13:11:13,859 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2023-07-17T13:11:13,861 copying build/lib/pdbeccdutils/utils/web_services.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2023-07-17T13:11:13,864 copying build/lib/pdbeccdutils/utils/config.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2023-07-17T13:11:13,866 copying build/lib/pdbeccdutils/utils/pubchem_downloader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2023-07-17T13:11:13,868 copying build/lib/pdbeccdutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/utils 2023-07-17T13:11:13,871 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/computations 2023-07-17T13:11:13,872 copying build/lib/pdbeccdutils/computations/parity_method.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/computations 2023-07-17T13:11:13,874 copying build/lib/pdbeccdutils/computations/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/computations 2023-07-17T13:11:13,876 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,878 copying build/lib/pdbeccdutils/tests/test_web_services.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,880 copying build/lib/pdbeccdutils/tests/test_helper_methods.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,882 copying build/lib/pdbeccdutils/tests/test_clc_reader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,884 copying build/lib/pdbeccdutils/tests/test_fragment_library.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,887 copying build/lib/pdbeccdutils/tests/test_load_eoh_cif.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,889 copying build/lib/pdbeccdutils/tests/test_property_generation.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,891 copying build/lib/pdbeccdutils/tests/tst_utilities.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,893 copying build/lib/pdbeccdutils/tests/test_file_writing.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,896 copying build/lib/pdbeccdutils/tests/test_process_components_cif_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,898 copying build/lib/pdbeccdutils/tests/test_boundmolecule_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,901 copying build/lib/pdbeccdutils/tests/test_scaffold_generation.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,903 copying build/lib/pdbeccdutils/tests/test_write_img.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,905 copying build/lib/pdbeccdutils/tests/conftest.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,907 copying build/lib/pdbeccdutils/tests/test_residue.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,910 copying build/lib/pdbeccdutils/tests/test_rdkit_fixtures.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,912 copying build/lib/pdbeccdutils/tests/test_inchi_key_matches.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,914 copying build/lib/pdbeccdutils/tests/test_clc_writer.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,916 copying build/lib/pdbeccdutils/tests/test_bound_molecule.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,918 copying build/lib/pdbeccdutils/tests/test_parity.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/tests 2023-07-17T13:11:13,921 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/data 2023-07-17T13:11:13,922 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/data/coordgen_templates 2023-07-17T13:11:13,923 copying build/lib/pdbeccdutils/data/coordgen_templates/templates.mae -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/coordgen_templates 2023-07-17T13:11:13,927 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,928 copying build/lib/pdbeccdutils/data/general_templates/porphycene.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,930 copying build/lib/pdbeccdutils/data/general_templates/cube.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,932 copying build/lib/pdbeccdutils/data/general_templates/phorbine.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,935 copying build/lib/pdbeccdutils/data/general_templates/adamantane.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,937 copying build/lib/pdbeccdutils/data/general_templates/porphin.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,939 copying build/lib/pdbeccdutils/data/general_templates/ru_complex2.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,941 copying build/lib/pdbeccdutils/data/general_templates/decahydrocorrin.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,943 copying build/lib/pdbeccdutils/data/general_templates/hem.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,946 copying build/lib/pdbeccdutils/data/general_templates/nonbornane.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,948 copying build/lib/pdbeccdutils/data/general_templates/ru_complex.sdf -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data/general_templates 2023-07-17T13:11:13,950 copying build/lib/pdbeccdutils/data/fragment_library.tsv -> build/bdist.linux-armv7l/wheel/pdbeccdutils/data 2023-07-17T13:11:13,955 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,956 copying build/lib/pdbeccdutils/core/ccd_writer.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,959 copying build/lib/pdbeccdutils/core/component.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,962 copying build/lib/pdbeccdutils/core/boundmolecule.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,965 copying build/lib/pdbeccdutils/core/models.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,968 copying build/lib/pdbeccdutils/core/exceptions.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,970 copying build/lib/pdbeccdutils/core/fragment_library.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,972 copying build/lib/pdbeccdutils/core/clc_writer.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,975 copying build/lib/pdbeccdutils/core/prd_reader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,978 copying build/lib/pdbeccdutils/core/depictions.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,980 copying build/lib/pdbeccdutils/core/ccd_reader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,983 copying build/lib/pdbeccdutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,985 copying build/lib/pdbeccdutils/core/prd_writer.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,989 copying build/lib/pdbeccdutils/core/clc_reader.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/core 2023-07-17T13:11:13,992 copying build/lib/pdbeccdutils/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils 2023-07-17T13:11:13,995 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2023-07-17T13:11:13,996 copying build/lib/pdbeccdutils/helpers/cif_tools.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2023-07-17T13:11:13,999 copying build/lib/pdbeccdutils/helpers/conversions.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2023-07-17T13:11:14,001 copying build/lib/pdbeccdutils/helpers/helper.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2023-07-17T13:11:14,003 copying build/lib/pdbeccdutils/helpers/mol_tools.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2023-07-17T13:11:14,005 copying build/lib/pdbeccdutils/helpers/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2023-07-17T13:11:14,007 copying build/lib/pdbeccdutils/helpers/drawing.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/helpers 2023-07-17T13:11:14,011 creating build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2023-07-17T13:11:14,012 copying build/lib/pdbeccdutils/scripts/process_components_cif_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2023-07-17T13:11:14,015 copying build/lib/pdbeccdutils/scripts/boundmolecule_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2023-07-17T13:11:14,017 copying build/lib/pdbeccdutils/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2023-07-17T13:11:14,019 copying build/lib/pdbeccdutils/scripts/setup_pubchem_library_cli.py -> build/bdist.linux-armv7l/wheel/pdbeccdutils/scripts 2023-07-17T13:11:14,021 running install_egg_info 2023-07-17T13:11:14,053 Copying pdbeccdutils.egg-info to build/bdist.linux-armv7l/wheel/pdbeccdutils-0.8.0-py3.9.egg-info 2023-07-17T13:11:14,066 running install_scripts 2023-07-17T13:11:14,086 creating build/bdist.linux-armv7l/wheel/pdbeccdutils-0.8.0.dist-info/WHEEL 2023-07-17T13:11:14,088 creating '/tmp/pip-wheel-ms_0jsa_/pdbeccdutils-0.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-17T13:11:14,091 adding 'doc/conf.py' 2023-07-17T13:11:14,093 adding 'pdbeccdutils/__init__.py' 2023-07-17T13:11:14,095 adding 'pdbeccdutils/computations/__init__.py' 2023-07-17T13:11:14,097 adding 'pdbeccdutils/computations/parity_method.py' 2023-07-17T13:11:14,099 adding 'pdbeccdutils/core/__init__.py' 2023-07-17T13:11:14,101 adding 'pdbeccdutils/core/boundmolecule.py' 2023-07-17T13:11:14,104 adding 'pdbeccdutils/core/ccd_reader.py' 2023-07-17T13:11:14,109 adding 'pdbeccdutils/core/ccd_writer.py' 2023-07-17T13:11:14,112 adding 'pdbeccdutils/core/clc_reader.py' 2023-07-17T13:11:14,115 adding 'pdbeccdutils/core/clc_writer.py' 2023-07-17T13:11:14,119 adding 'pdbeccdutils/core/component.py' 2023-07-17T13:11:14,122 adding 'pdbeccdutils/core/depictions.py' 2023-07-17T13:11:14,123 adding 'pdbeccdutils/core/exceptions.py' 2023-07-17T13:11:14,125 adding 'pdbeccdutils/core/fragment_library.py' 2023-07-17T13:11:14,127 adding 'pdbeccdutils/core/models.py' 2023-07-17T13:11:14,129 adding 'pdbeccdutils/core/prd_reader.py' 2023-07-17T13:11:14,132 adding 'pdbeccdutils/core/prd_writer.py' 2023-07-17T13:11:14,153 adding 'pdbeccdutils/data/fragment_library.tsv' 2023-07-17T13:11:14,157 adding 'pdbeccdutils/data/coordgen_templates/templates.mae' 2023-07-17T13:11:14,159 adding 'pdbeccdutils/data/general_templates/adamantane.sdf' 2023-07-17T13:11:14,161 adding 'pdbeccdutils/data/general_templates/cube.sdf' 2023-07-17T13:11:14,162 adding 'pdbeccdutils/data/general_templates/decahydrocorrin.sdf' 2023-07-17T13:11:14,164 adding 'pdbeccdutils/data/general_templates/hem.sdf' 2023-07-17T13:11:14,165 adding 'pdbeccdutils/data/general_templates/nonbornane.sdf' 2023-07-17T13:11:14,167 adding 'pdbeccdutils/data/general_templates/phorbine.sdf' 2023-07-17T13:11:14,169 adding 'pdbeccdutils/data/general_templates/porphin.sdf' 2023-07-17T13:11:14,170 adding 'pdbeccdutils/data/general_templates/porphycene.sdf' 2023-07-17T13:11:14,172 adding 'pdbeccdutils/data/general_templates/ru_complex.sdf' 2023-07-17T13:11:14,173 adding 'pdbeccdutils/data/general_templates/ru_complex2.sdf' 2023-07-17T13:11:14,175 adding 'pdbeccdutils/helpers/__init__.py' 2023-07-17T13:11:14,177 adding 'pdbeccdutils/helpers/cif_tools.py' 2023-07-17T13:11:14,179 adding 'pdbeccdutils/helpers/conversions.py' 2023-07-17T13:11:14,181 adding 'pdbeccdutils/helpers/drawing.py' 2023-07-17T13:11:14,183 adding 'pdbeccdutils/helpers/helper.py' 2023-07-17T13:11:14,186 adding 'pdbeccdutils/helpers/mol_tools.py' 2023-07-17T13:11:14,188 adding 'pdbeccdutils/scripts/__init__.py' 2023-07-17T13:11:14,190 adding 'pdbeccdutils/scripts/boundmolecule_cli.py' 2023-07-17T13:11:14,193 adding 'pdbeccdutils/scripts/process_components_cif_cli.py' 2023-07-17T13:11:14,195 adding 'pdbeccdutils/scripts/setup_pubchem_library_cli.py' 2023-07-17T13:11:14,197 adding 'pdbeccdutils/tests/conftest.py' 2023-07-17T13:11:14,198 adding 'pdbeccdutils/tests/test_bound_molecule.py' 2023-07-17T13:11:14,200 adding 'pdbeccdutils/tests/test_boundmolecule_cli.py' 2023-07-17T13:11:14,202 adding 'pdbeccdutils/tests/test_clc_reader.py' 2023-07-17T13:11:14,203 adding 'pdbeccdutils/tests/test_clc_writer.py' 2023-07-17T13:11:14,205 adding 'pdbeccdutils/tests/test_file_writing.py' 2023-07-17T13:11:14,207 adding 'pdbeccdutils/tests/test_fragment_library.py' 2023-07-17T13:11:14,209 adding 'pdbeccdutils/tests/test_helper_methods.py' 2023-07-17T13:11:14,210 adding 'pdbeccdutils/tests/test_inchi_key_matches.py' 2023-07-17T13:11:14,212 adding 'pdbeccdutils/tests/test_load_eoh_cif.py' 2023-07-17T13:11:14,213 adding 'pdbeccdutils/tests/test_parity.py' 2023-07-17T13:11:14,215 adding 'pdbeccdutils/tests/test_process_components_cif_cli.py' 2023-07-17T13:11:14,217 adding 'pdbeccdutils/tests/test_property_generation.py' 2023-07-17T13:11:14,218 adding 'pdbeccdutils/tests/test_rdkit_fixtures.py' 2023-07-17T13:11:14,220 adding 'pdbeccdutils/tests/test_residue.py' 2023-07-17T13:11:14,222 adding 'pdbeccdutils/tests/test_scaffold_generation.py' 2023-07-17T13:11:14,223 adding 'pdbeccdutils/tests/test_web_services.py' 2023-07-17T13:11:14,225 adding 'pdbeccdutils/tests/test_write_img.py' 2023-07-17T13:11:14,227 adding 'pdbeccdutils/tests/tst_utilities.py' 2023-07-17T13:11:14,229 adding 'pdbeccdutils/utils/__init__.py' 2023-07-17T13:11:14,230 adding 'pdbeccdutils/utils/config.py' 2023-07-17T13:11:14,232 adding 'pdbeccdutils/utils/pubchem_downloader.py' 2023-07-17T13:11:14,234 adding 'pdbeccdutils/utils/web_services.py' 2023-07-17T13:11:14,237 adding 'pdbeccdutils-0.8.0.dist-info/LICENSE' 2023-07-17T13:11:14,239 adding 'pdbeccdutils-0.8.0.dist-info/METADATA' 2023-07-17T13:11:14,240 adding 'pdbeccdutils-0.8.0.dist-info/WHEEL' 2023-07-17T13:11:14,242 adding 'pdbeccdutils-0.8.0.dist-info/entry_points.txt' 2023-07-17T13:11:14,243 adding 'pdbeccdutils-0.8.0.dist-info/top_level.txt' 2023-07-17T13:11:14,245 adding 'pdbeccdutils-0.8.0.dist-info/RECORD' 2023-07-17T13:11:14,250 removing build/bdist.linux-armv7l/wheel 2023-07-17T13:11:14,349 Building wheel for pdbeccdutils (setup.py): finished with status 'done' 2023-07-17T13:11:14,353 Created wheel for pdbeccdutils: filename=pdbeccdutils-0.8.0-py3-none-any.whl size=147921 sha256=95f99f9be1265fad438476b06578874da5cf2b6e8ce552ae08e63d7dd826448d 2023-07-17T13:11:14,354 Stored in directory: /tmp/pip-ephem-wheel-cache-m6iu478n/wheels/0b/94/45/4da112aa39534c8bafe6f85f60d5e0177430d6cefa832927e1 2023-07-17T13:11:14,368 Successfully built pdbeccdutils 2023-07-17T13:11:14,376 Removed build tracker: '/tmp/pip-build-tracker-7x052l5u'