2023-07-18T13:48:56,976 Created temporary directory: /tmp/pip-build-tracker-2pttmjpq
2023-07-18T13:48:56,977 Initialized build tracking at /tmp/pip-build-tracker-2pttmjpq
2023-07-18T13:48:56,977 Created build tracker: /tmp/pip-build-tracker-2pttmjpq
2023-07-18T13:48:56,978 Entered build tracker: /tmp/pip-build-tracker-2pttmjpq
2023-07-18T13:48:56,978 Created temporary directory: /tmp/pip-wheel-1os_4uk8
2023-07-18T13:48:56,981 Created temporary directory: /tmp/pip-ephem-wheel-cache-b4y77vdl
2023-07-18T13:48:57,004 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-07-18T13:48:57,007 2 location(s) to search for versions of moleculekit:
2023-07-18T13:48:57,007 * https://pypi.org/simple/moleculekit/
2023-07-18T13:48:57,007 * https://www.piwheels.org/simple/moleculekit/
2023-07-18T13:48:57,007 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-07-18T13:48:57,008 Getting page https://pypi.org/simple/moleculekit/
2023-07-18T13:48:57,010 Found index url https://pypi.org/simple/
2023-07-18T13:48:57,065 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-07-18T13:48:57,101   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,102   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-07-18T13:48:57,102   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,102   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-07-18T13:48:57,103   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,103   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-07-18T13:48:57,103   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,103   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-07-18T13:48:57,104   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,104   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-07-18T13:48:57,104   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,104   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-07-18T13:48:57,105   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,105   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-07-18T13:48:57,105   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,105   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-07-18T13:48:57,106   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,106   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-07-18T13:48:57,106   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,106   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-07-18T13:48:57,107   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,107   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-07-18T13:48:57,107   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,107   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-07-18T13:48:57,108   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,108   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-07-18T13:48:57,108   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,108   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-07-18T13:48:57,108   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,109   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-07-18T13:48:57,109   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,109   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-07-18T13:48:57,109   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,110   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-07-18T13:48:57,110   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,110   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-07-18T13:48:57,110   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,111   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-07-18T13:48:57,111   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,111   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-07-18T13:48:57,111   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,112   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-07-18T13:48:57,112   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,112   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-07-18T13:48:57,112   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,113   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-07-18T13:48:57,113   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,113   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-07-18T13:48:57,113   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,113   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-07-18T13:48:57,114   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,114   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-07-18T13:48:57,114   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,114   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-07-18T13:48:57,115   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,115   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-07-18T13:48:57,115   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,115   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-07-18T13:48:57,116   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,116   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-07-18T13:48:57,116   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,116   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-07-18T13:48:57,117   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,117   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-07-18T13:48:57,117   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,117   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
2023-07-18T13:48:57,118   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0e/6f/a11697b46e26552b60513aad11c1862ea314d1628ed83b3d1ea7cb552d51/moleculekit-0.3.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,118   Found link https://files.pythonhosted.org/packages/13/f9/af3d7677c2eb61bb310ddad301ab47b9c1db2f923b0efad9ce605112aafb/moleculekit-0.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.1
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2023-07-18T13:48:57,118   Found link https://files.pythonhosted.org/packages/0d/3f/7743a3ec8c6ed58c5f0c12bf19654ba6275d473044861d9479ff346f8859/moleculekit-0.3.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.2
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2023-07-18T13:48:57,119   Found link https://files.pythonhosted.org/packages/a1/bf/2b3762bf7738dd1850a06eb6330cd8d17c49acaa272d43fc80c7c9c44a04/moleculekit-0.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.3
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2023-07-18T13:48:57,119   Found link https://files.pythonhosted.org/packages/7e/e0/d4abeaf42102abf8d132168518d29b8fec430608a3bb484a3254b63e9d37/moleculekit-0.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.4
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2023-07-18T13:48:57,120   Found link https://files.pythonhosted.org/packages/18/8a/a376ec94bd0c414528774a510846e3a34afec6356cda3d31d3a044a74a15/moleculekit-0.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.5
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2023-07-18T13:48:57,121   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/18/d2/3565f29e52927e9cc0e9a6e77908f7bcd39bb25cc6a953ef326ebb0b920f/moleculekit-0.4.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,122   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
2023-07-18T13:48:57,122   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/45/48/d6f7e3ff07d4e04aced25dc1e28790e8d1d2aa95ccd0db0f0043e354f0de/moleculekit-0.4.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-07-18T13:48:57,123   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4b/f0/8b8df48948c27171f2db632801a49bd08f3f222d1c6e69abc9281962eb29/moleculekit-0.4.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-07-18T13:48:57,123   Found link https://files.pythonhosted.org/packages/8f/22/90193aaf5014419463425cf48b2857ffb08d1a85df3af6407f370ea39358/moleculekit-0.4.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.6
2023-07-18T13:48:57,124   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/24/38/72e6ecc3ee5ad4463161bfbba8c4ee06716a2d393eee3dfcbecfc6566ad4/moleculekit-0.4.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-07-18T13:48:57,125   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5c/75/2a9151eb7a9fbbd8b36c5283452449e596f081188d25c07f33a176783e8e/moleculekit-0.5.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-07-18T13:48:57,125   Found link https://files.pythonhosted.org/packages/31/e6/a052ad91265d7e72fcf32d9335d746bba3c06b23fc5a163960bd36e6dde6/moleculekit-0.5.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.2
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2023-07-18T13:48:57,125   Found link https://files.pythonhosted.org/packages/16/e8/a60ecf23c91f1248aaeca4c5a3aacb14887fa3785e061ab5e225e06d7de3/moleculekit-0.5.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.3
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2023-07-18T13:48:57,126   Found link https://files.pythonhosted.org/packages/b1/30/da12019468d39b9fc72b300f6bc0cbc4045ad8ccc1b8f25aa9fb7dced289/moleculekit-0.5.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.5.4
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2023-07-18T13:48:57,126   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3a/53/7ae8cc33411c0f5f83d245abfeabfd81ed123a3cfbf8a500ec4d96648275/moleculekit-0.5.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-07-18T13:48:57,127   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/65/8e/ec9922bc8930ae3a78e0a98af4fe053e8c359ccedceb54ced12bb1954815/moleculekit-0.6.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-07-18T13:48:57,135   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2023-07-18T13:48:57,135   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2023-07-18T13:48:57,136   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2023-07-18T13:48:57,136   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2023-07-18T13:48:57,136   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2023-07-18T13:48:57,136   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2023-07-18T13:48:57,137   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2023-07-18T13:48:57,137   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2023-07-18T13:48:57,138   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2023-07-18T13:48:57,138   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2023-07-18T13:48:57,138   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2023-07-18T13:48:57,138   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2023-07-18T13:48:57,139   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2023-07-18T13:48:57,139   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2023-07-18T13:48:57,139   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2023-07-18T13:48:57,139   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2023-07-18T13:48:57,140   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2023-07-18T13:48:57,140   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2023-07-18T13:48:57,140   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2023-07-18T13:48:57,140   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2023-07-18T13:48:57,141   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2023-07-18T13:48:57,141   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2023-07-18T13:48:57,141   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2023-07-18T13:48:57,141   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2023-07-18T13:48:57,142   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2023-07-18T13:48:57,142   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-07-18T13:48:57,142   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2023-07-18T13:48:57,143   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2023-07-18T13:48:57,143   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2023-07-18T13:48:57,143   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2023-07-18T13:48:57,143   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2023-07-18T13:48:57,144   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2023-07-18T13:48:57,144   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2023-07-18T13:48:57,144   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2023-07-18T13:48:57,144   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2023-07-18T13:48:57,145   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2023-07-18T13:48:57,145   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2023-07-18T13:48:57,145   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2023-07-18T13:48:57,145   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2023-07-18T13:48:57,146   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2023-07-18T13:48:57,146   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2023-07-18T13:48:57,146   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2023-07-18T13:48:57,146   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2023-07-18T13:48:57,147   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2023-07-18T13:48:57,147   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2023-07-18T13:48:57,147   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2023-07-18T13:48:57,148   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2023-07-18T13:48:57,148   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2023-07-18T13:48:57,149   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2023-07-18T13:48:57,149   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2023-07-18T13:48:57,150   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-07-18T13:48:57,150   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2023-07-18T13:48:57,151   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2023-07-18T13:48:57,151   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2023-07-18T13:48:57,152   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2023-07-18T13:48:57,153   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-07-18T13:48:57,153   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-07-18T13:48:57,154   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2023-07-18T13:48:57,154   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2023-07-18T13:48:57,155   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2023-07-18T13:48:57,155   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2023-07-18T13:48:57,156   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2023-07-18T13:48:57,156   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2023-07-18T13:48:57,157   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2023-07-18T13:48:57,158   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2023-07-18T13:48:57,158   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2023-07-18T13:48:57,159   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2023-07-18T13:48:57,159   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
2023-07-18T13:48:57,160   Found link https://files.pythonhosted.org/packages/3d/e9/5d17d4e81b5894b9ace33d43b373881813b8a68b0a1365d7590990c5c370/moleculekit-1.7.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.0
2023-07-18T13:48:57,160   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-07-18T13:48:57,161   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-07-18T13:48:57,161   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-07-18T13:48:57,162   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-07-18T13:48:57,162 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-07-18T13:48:57,163 Getting page https://www.piwheels.org/simple/moleculekit/
2023-07-18T13:48:57,164 Found index url https://www.piwheels.org/simple/
2023-07-18T13:48:57,321 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-07-18T13:48:57,381   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.2-cp39-cp39-linux_armv7l.whl#sha256=8b358f2e4238d3d23612200b0ffd6a1ab6df72929d6e06022996ee2b0bc7c3cd (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-07-18T13:48:57,382   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.9-cp39-cp39-linux_armv7l.whl#sha256=e8ded20037d22ac419d05d0a80db0081999eac7f92084cd85a24aef997eb56cd (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-07-18T13:48:57,384   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
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2023-07-18T13:48:57,384   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,385   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,385   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,385   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,385   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,385   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,386   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,386   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,386   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,386   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,386   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,387   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,387   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,387   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,387   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,387   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,387   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,388   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,388   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,388   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,388   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,388   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,389   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,389   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,389   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,389   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,389   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,390   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,390   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,390   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,391   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,391   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,391   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,391   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,391   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,391   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,392   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,392   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,392   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,392   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,392   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,393   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,393   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,393   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,393   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,393   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,394   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,395   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,395   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,395   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,395   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,395   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,396   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,396   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,396   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,396   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
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2023-07-18T13:48:57,398   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
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2023-07-18T13:48:57,400   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
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2023-07-18T13:48:57,400   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,401   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
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2023-07-18T13:48:57,401   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,401   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,401   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,402   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,402   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,402   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,402   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,402   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,403   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,403   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,403   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,403   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,403   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,404   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,404   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,404   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,404   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,404   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,405   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,406   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,407   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
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2023-07-18T13:48:57,413   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-07-18T13:48:57,413 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-07-18T13:48:57,413 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-07-18T13:48:57,451 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-07-18T13:48:57,471 Collecting moleculekit==1.7.4
2023-07-18T13:48:57,473   Created temporary directory: /tmp/pip-unpack-3eh94vuw
2023-07-18T13:48:57,605   Downloading moleculekit-1.7.4.tar.gz (6.1 MB)
2023-07-18T13:49:00,307   Added moleculekit==1.7.4 from https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz to build tracker '/tmp/pip-build-tracker-2pttmjpq'
2023-07-18T13:49:00,315   Created temporary directory: /tmp/pip-build-env-2sax6p3r
2023-07-18T13:49:00,325   Installing build dependencies: started
2023-07-18T13:49:00,326   Running command pip subprocess to install build dependencies
2023-07-18T13:49:01,481   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-07-18T13:49:01,840   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-07-18T13:49:03,518   Collecting setuptools
2023-07-18T13:49:03,598     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB)
2023-07-18T13:49:04,909   Collecting numpy>=1.18.5
2023-07-18T13:49:06,079     Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.1-cp39-cp39-linux_armv7l.whl (12.5 MB)
2023-07-18T13:49:08,002   Collecting Cython>=0.29.21
2023-07-18T13:49:08,019     Downloading https://www.piwheels.org/simple/cython/Cython-3.0.0-cp39-cp39-linux_armv7l.whl (10.6 MB)
2023-07-18T13:49:08,889        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.6/10.6 MB 12.3 MB/s eta 0:00:00
2023-07-18T13:49:09,175   Collecting toml
2023-07-18T13:49:09,196     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-07-18T13:49:09,313   Collecting versioneer[toml]==0.28
2023-07-18T13:49:09,333     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-07-18T13:49:09,463   Collecting tomli (from versioneer[toml]==0.28)
2023-07-18T13:49:09,480     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-07-18T13:49:11,374   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-07-18T13:49:11,412     Creating /tmp/pip-build-env-2sax6p3r/overlay/bin
2023-07-18T13:49:11,415     changing mode of /tmp/pip-build-env-2sax6p3r/overlay/bin/versioneer to 755
2023-07-18T13:49:21,900     changing mode of /tmp/pip-build-env-2sax6p3r/overlay/bin/f2py to 755
2023-07-18T13:49:21,902     changing mode of /tmp/pip-build-env-2sax6p3r/overlay/bin/f2py3 to 755
2023-07-18T13:49:21,905     changing mode of /tmp/pip-build-env-2sax6p3r/overlay/bin/f2py3.9 to 755
2023-07-18T13:49:25,316     changing mode of /tmp/pip-build-env-2sax6p3r/overlay/bin/cygdb to 755
2023-07-18T13:49:25,318     changing mode of /tmp/pip-build-env-2sax6p3r/overlay/bin/cython to 755
2023-07-18T13:49:25,321     changing mode of /tmp/pip-build-env-2sax6p3r/overlay/bin/cythonize to 755
2023-07-18T13:49:25,347   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-07-18T13:49:25,347   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.25.1 which is incompatible.
2023-07-18T13:49:25,348   Successfully installed Cython-3.0.0 numpy-1.25.1 setuptools-68.0.0 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-07-18T13:49:25,737   Installing build dependencies: finished with status 'done'
2023-07-18T13:49:25,742   Getting requirements to build wheel: started
2023-07-18T13:49:25,743   Running command Getting requirements to build wheel
2023-07-18T13:50:04,151   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,152   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,152   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,152   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,152   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,152   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,153   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,153   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,153   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,153   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-07-18T13:50:04,153   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-07-18T13:50:04,153   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-07-18T13:50:04,154   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-07-18T13:50:04,154   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-07-18T13:50:04,154   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-07-18T13:50:04,154   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-07-18T13:50:04,154   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-07-18T13:50:04,154   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-07-18T13:50:04,154   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-07-18T13:50:04,154   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-07-18T13:50:04,155   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-07-18T13:50:04,155   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-07-18T13:50:04,227   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-07-18T13:50:04,227     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-07-18T13:50:04,452   running egg_info
2023-07-18T13:50:04,458   writing moleculekit.egg-info/PKG-INFO
2023-07-18T13:50:04,461   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-07-18T13:50:04,463   writing requirements to moleculekit.egg-info/requires.txt
2023-07-18T13:50:04,464   writing top-level names to moleculekit.egg-info/top_level.txt
2023-07-18T13:50:04,496   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-07-18T13:50:04,529   reading manifest template 'MANIFEST.in'
2023-07-18T13:50:04,748   no previously-included directories found matching 'moleculekit/test-data'
2023-07-18T13:50:04,749   no previously-included directories found matching 'moleculekit/tests'
2023-07-18T13:50:04,750   no previously-included directories found matching 'package'
2023-07-18T13:50:04,751   adding license file 'LICENSE'
2023-07-18T13:50:04,768   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-07-18T13:50:05,715   Getting requirements to build wheel: finished with status 'done'
2023-07-18T13:50:05,730   Installing backend dependencies: started
2023-07-18T13:50:05,731   Running command pip subprocess to install backend dependencies
2023-07-18T13:50:06,945   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-07-18T13:50:07,338   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-07-18T13:50:07,786   Collecting wheel
2023-07-18T13:50:07,803     Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB)
2023-07-18T13:50:09,288   Installing collected packages: wheel
2023-07-18T13:50:09,507     Creating /tmp/pip-build-env-2sax6p3r/normal/bin
2023-07-18T13:50:09,509     changing mode of /tmp/pip-build-env-2sax6p3r/normal/bin/wheel to 755
2023-07-18T13:50:09,522   Successfully installed wheel-0.40.0
2023-07-18T13:50:09,734   Installing backend dependencies: finished with status 'done'
2023-07-18T13:50:09,737   Created temporary directory: /tmp/pip-modern-metadata-8zm4geng
2023-07-18T13:50:09,739   Preparing metadata (pyproject.toml): started
2023-07-18T13:50:09,740   Running command Preparing metadata (pyproject.toml)
2023-07-18T13:50:11,841   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-07-18T13:50:11,841     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-07-18T13:50:12,080   running dist_info
2023-07-18T13:50:12,082   creating /tmp/pip-modern-metadata-8zm4geng/moleculekit.egg-info
2023-07-18T13:50:12,088   writing /tmp/pip-modern-metadata-8zm4geng/moleculekit.egg-info/PKG-INFO
2023-07-18T13:50:12,091   writing dependency_links to /tmp/pip-modern-metadata-8zm4geng/moleculekit.egg-info/dependency_links.txt
2023-07-18T13:50:12,092   writing requirements to /tmp/pip-modern-metadata-8zm4geng/moleculekit.egg-info/requires.txt
2023-07-18T13:50:12,093   writing top-level names to /tmp/pip-modern-metadata-8zm4geng/moleculekit.egg-info/top_level.txt
2023-07-18T13:50:12,095   writing manifest file '/tmp/pip-modern-metadata-8zm4geng/moleculekit.egg-info/SOURCES.txt'
2023-07-18T13:50:12,125   reading manifest file '/tmp/pip-modern-metadata-8zm4geng/moleculekit.egg-info/SOURCES.txt'
2023-07-18T13:50:12,127   reading manifest template 'MANIFEST.in'
2023-07-18T13:50:12,356   no previously-included directories found matching 'moleculekit/test-data'
2023-07-18T13:50:12,356   no previously-included directories found matching 'moleculekit/tests'
2023-07-18T13:50:12,357   no previously-included directories found matching 'package'
2023-07-18T13:50:12,357   adding license file 'LICENSE'
2023-07-18T13:50:12,369   writing manifest file '/tmp/pip-modern-metadata-8zm4geng/moleculekit.egg-info/SOURCES.txt'
2023-07-18T13:50:12,378   creating '/tmp/pip-modern-metadata-8zm4geng/moleculekit-1.7.4.dist-info'
2023-07-18T13:50:12,572   Preparing metadata (pyproject.toml): finished with status 'done'
2023-07-18T13:50:12,579   Source in /tmp/pip-wheel-1os_4uk8/moleculekit_222464e52eed4515805dcec2f6e2c9af has version 1.7.4, which satisfies requirement moleculekit==1.7.4 from https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz
2023-07-18T13:50:12,580   Removed moleculekit==1.7.4 from https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz from build tracker '/tmp/pip-build-tracker-2pttmjpq'
2023-07-18T13:50:12,586 Created temporary directory: /tmp/pip-unpack-vrnd01cn
2023-07-18T13:50:12,586 Building wheels for collected packages: moleculekit
2023-07-18T13:50:12,591   Created temporary directory: /tmp/pip-wheel-swu_wuy1
2023-07-18T13:50:12,591   Destination directory: /tmp/pip-wheel-swu_wuy1
2023-07-18T13:50:12,593   Building wheel for moleculekit (pyproject.toml): started
2023-07-18T13:50:12,594   Running command Building wheel for moleculekit (pyproject.toml)
2023-07-18T13:50:14,572   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-07-18T13:50:14,573     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-07-18T13:50:14,797   running bdist_wheel
2023-07-18T13:50:14,814   running build
2023-07-18T13:50:14,814   running build_py
2023-07-18T13:50:14,822   creating build
2023-07-18T13:50:14,822   creating build/lib.linux-armv7l-cpython-39
2023-07-18T13:50:14,823   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,824   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,826   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,827   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,830   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,832   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,833   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,835   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,836   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,838   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,840   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,843   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,845   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,847   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,850   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,852   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,857   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,858   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,862   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,864   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,867   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,869   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:14,872   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-07-18T13:50:14,873   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-07-18T13:50:14,876   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-07-18T13:50:14,877   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-07-18T13:50:14,880   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-07-18T13:50:14,883   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-07-18T13:50:14,884   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-07-18T13:50:14,887   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-07-18T13:50:14,889   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-07-18T13:50:14,892   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-07-18T13:50:14,895   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-07-18T13:50:14,897   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-07-18T13:50:14,899   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-07-18T13:50:14,901   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-07-18T13:50:14,903   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-07-18T13:50:14,904   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-07-18T13:50:14,907   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-07-18T13:50:14,910   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,912   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,915   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,918   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,920   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,923   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,925   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,928   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,930   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,933   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,935   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,937   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,939   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,941   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-07-18T13:50:14,945   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,946   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,949   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,951   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,953   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,956   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,958   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,961   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,963   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,966   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,969   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,971   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,973   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,975   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,977   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,980   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-07-18T13:50:14,983   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-07-18T13:50:14,984   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-07-18T13:50:14,987   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-07-18T13:50:14,989   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-07-18T13:50:14,993   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-07-18T13:50:14,994   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-07-18T13:50:14,997   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-07-18T13:50:15,000   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-07-18T13:50:15,002   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-07-18T13:50:15,004   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-07-18T13:50:15,005   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-07-18T13:50:15,011   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-07-18T13:50:15,013   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-07-18T13:50:15,015   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-07-18T13:50:15,018   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-07-18T13:50:15,019   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-07-18T13:50:15,022   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-07-18T13:50:15,025   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-07-18T13:50:15,028   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-07-18T13:50:15,030   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-07-18T13:50:15,031   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-07-18T13:50:15,034   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-07-18T13:50:15,037   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-07-18T13:50:15,038   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-07-18T13:50:15,040   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-07-18T13:50:15,042   running egg_info
2023-07-18T13:50:15,048   writing moleculekit.egg-info/PKG-INFO
2023-07-18T13:50:15,050   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-07-18T13:50:15,052   writing requirements to moleculekit.egg-info/requires.txt
2023-07-18T13:50:15,053   writing top-level names to moleculekit.egg-info/top_level.txt
2023-07-18T13:50:15,072   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-07-18T13:50:15,081   reading manifest template 'MANIFEST.in'
2023-07-18T13:50:15,299   no previously-included directories found matching 'moleculekit/test-data'
2023-07-18T13:50:15,300   no previously-included directories found matching 'moleculekit/tests'
2023-07-18T13:50:15,301   no previously-included directories found matching 'package'
2023-07-18T13:50:15,302   adding license file 'LICENSE'
2023-07-18T13:50:15,318   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-07-18T13:50:15,329   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-07-18T13:50:15,329   !!

2023-07-18T13:50:15,329           ********************************************************************************
2023-07-18T13:50:15,329           ############################
2023-07-18T13:50:15,329           # Package would be ignored #
2023-07-18T13:50:15,329           ############################
2023-07-18T13:50:15,330           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-07-18T13:50:15,330           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,330           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,330           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-07-18T13:50:15,330           to the `packages` configuration field.

2023-07-18T13:50:15,330           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,330           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,331           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,331           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,331           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,331           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-07-18T13:50:15,331           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-07-18T13:50:15,331           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,332           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,332           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,332           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,332           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,332           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,333                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,333                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,333                 directory, all directories are treated like packages.
2023-07-18T13:50:15,333           ********************************************************************************

2023-07-18T13:50:15,333   !!
2023-07-18T13:50:15,333     check.warn(importable)
2023-07-18T13:50:15,334   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-07-18T13:50:15,334   !!

2023-07-18T13:50:15,335           ********************************************************************************
2023-07-18T13:50:15,335           ############################
2023-07-18T13:50:15,335           # Package would be ignored #
2023-07-18T13:50:15,335           ############################
2023-07-18T13:50:15,335           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-07-18T13:50:15,335           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,336           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,336           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-07-18T13:50:15,336           to the `packages` configuration field.

2023-07-18T13:50:15,336           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,336           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,336           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,336           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,337           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,337           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-07-18T13:50:15,337           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-07-18T13:50:15,337           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,337           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,337           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,338           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,338           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,338           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,338                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,338                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,338                 directory, all directories are treated like packages.
2023-07-18T13:50:15,339           ********************************************************************************

2023-07-18T13:50:15,339   !!
2023-07-18T13:50:15,339     check.warn(importable)
2023-07-18T13:50:15,344   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-07-18T13:50:15,345   !!

2023-07-18T13:50:15,345           ********************************************************************************
2023-07-18T13:50:15,345           ############################
2023-07-18T13:50:15,345           # Package would be ignored #
2023-07-18T13:50:15,345           ############################
2023-07-18T13:50:15,345           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-07-18T13:50:15,345           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,346           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,346           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-07-18T13:50:15,346           to the `packages` configuration field.

2023-07-18T13:50:15,346           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,346           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,346           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,347           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,347           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,347           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-07-18T13:50:15,347           already explicitly excluding 'moleculekit.distance_utils' via
2023-07-18T13:50:15,347           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,347           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,348           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,348           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,348           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,348           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,348                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,349                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,349                 directory, all directories are treated like packages.
2023-07-18T13:50:15,349           ********************************************************************************

2023-07-18T13:50:15,349   !!
2023-07-18T13:50:15,349     check.warn(importable)
2023-07-18T13:50:15,349   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-07-18T13:50:15,349   !!

2023-07-18T13:50:15,350           ********************************************************************************
2023-07-18T13:50:15,350           ############################
2023-07-18T13:50:15,350           # Package would be ignored #
2023-07-18T13:50:15,350           ############################
2023-07-18T13:50:15,350           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-07-18T13:50:15,350           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,350           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,351           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-07-18T13:50:15,351           to the `packages` configuration field.

2023-07-18T13:50:15,351           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,351           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,351           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,351           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,352           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,352           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-07-18T13:50:15,352           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-07-18T13:50:15,352           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,352           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,352           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,353           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,353           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,353           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,353                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,353                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,353                 directory, all directories are treated like packages.
2023-07-18T13:50:15,354           ********************************************************************************

2023-07-18T13:50:15,354   !!
2023-07-18T13:50:15,354     check.warn(importable)
2023-07-18T13:50:15,354   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-07-18T13:50:15,354   !!

2023-07-18T13:50:15,354           ********************************************************************************
2023-07-18T13:50:15,354           ############################
2023-07-18T13:50:15,355           # Package would be ignored #
2023-07-18T13:50:15,355           ############################
2023-07-18T13:50:15,355           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-07-18T13:50:15,355           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,355           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,355           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-07-18T13:50:15,355           to the `packages` configuration field.

2023-07-18T13:50:15,356           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,356           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,356           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,356           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,356           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,357           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-07-18T13:50:15,357           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-07-18T13:50:15,357           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,357           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,357           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,357           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,357           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,358           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,358                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,358                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,358                 directory, all directories are treated like packages.
2023-07-18T13:50:15,358           ********************************************************************************

2023-07-18T13:50:15,358   !!
2023-07-18T13:50:15,359     check.warn(importable)
2023-07-18T13:50:15,359   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-07-18T13:50:15,359   !!

2023-07-18T13:50:15,359           ********************************************************************************
2023-07-18T13:50:15,359           ############################
2023-07-18T13:50:15,359           # Package would be ignored #
2023-07-18T13:50:15,359           ############################
2023-07-18T13:50:15,359           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-07-18T13:50:15,360           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,360           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,360           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-07-18T13:50:15,360           to the `packages` configuration field.

2023-07-18T13:50:15,360           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,360           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,361           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,361           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,361           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,361           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-07-18T13:50:15,361           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-07-18T13:50:15,361           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,362           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,362           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,362           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,362           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,363           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,363                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,363                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,363                 directory, all directories are treated like packages.
2023-07-18T13:50:15,363           ********************************************************************************

2023-07-18T13:50:15,363   !!
2023-07-18T13:50:15,363     check.warn(importable)
2023-07-18T13:50:15,364   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-07-18T13:50:15,364   !!

2023-07-18T13:50:15,364           ********************************************************************************
2023-07-18T13:50:15,364           ############################
2023-07-18T13:50:15,364           # Package would be ignored #
2023-07-18T13:50:15,364           ############################
2023-07-18T13:50:15,364           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-07-18T13:50:15,365           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,365           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,365           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-07-18T13:50:15,365           to the `packages` configuration field.

2023-07-18T13:50:15,365           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,365           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,365           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,366           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,366           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,366           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-07-18T13:50:15,366           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-07-18T13:50:15,366           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,366           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,367           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,367           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,367           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,367           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,367                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,368                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,368                 directory, all directories are treated like packages.
2023-07-18T13:50:15,368           ********************************************************************************

2023-07-18T13:50:15,368   !!
2023-07-18T13:50:15,368     check.warn(importable)
2023-07-18T13:50:15,368   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-07-18T13:50:15,368   !!

2023-07-18T13:50:15,369           ********************************************************************************
2023-07-18T13:50:15,369           ############################
2023-07-18T13:50:15,369           # Package would be ignored #
2023-07-18T13:50:15,369           ############################
2023-07-18T13:50:15,369           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-07-18T13:50:15,369           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,369           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,369           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-07-18T13:50:15,370           to the `packages` configuration field.

2023-07-18T13:50:15,370           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,370           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,370           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,370           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,370           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,371           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-07-18T13:50:15,371           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-07-18T13:50:15,371           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,371           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,371           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,371           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,372           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,372           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,372                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,372                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,372                 directory, all directories are treated like packages.
2023-07-18T13:50:15,372           ********************************************************************************

2023-07-18T13:50:15,373   !!
2023-07-18T13:50:15,373     check.warn(importable)
2023-07-18T13:50:15,373   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-07-18T13:50:15,373   !!

2023-07-18T13:50:15,373           ********************************************************************************
2023-07-18T13:50:15,373           ############################
2023-07-18T13:50:15,373           # Package would be ignored #
2023-07-18T13:50:15,374           ############################
2023-07-18T13:50:15,374           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-07-18T13:50:15,374           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,374           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,374           package, please make sure that 'moleculekit.share' is explicitly added
2023-07-18T13:50:15,374           to the `packages` configuration field.

2023-07-18T13:50:15,375           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,375           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,375           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,375           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,375           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,375           If you don't want 'moleculekit.share' to be distributed and are
2023-07-18T13:50:15,376           already explicitly excluding 'moleculekit.share' via
2023-07-18T13:50:15,376           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,376           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,376           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,376           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,376           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,377           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,377                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,377                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,377                 directory, all directories are treated like packages.
2023-07-18T13:50:15,377           ********************************************************************************

2023-07-18T13:50:15,377   !!
2023-07-18T13:50:15,378     check.warn(importable)
2023-07-18T13:50:15,378   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-07-18T13:50:15,378   !!

2023-07-18T13:50:15,378           ********************************************************************************
2023-07-18T13:50:15,378           ############################
2023-07-18T13:50:15,378           # Package would be ignored #
2023-07-18T13:50:15,378           ############################
2023-07-18T13:50:15,378           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-07-18T13:50:15,379           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,379           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,379           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-07-18T13:50:15,379           to the `packages` configuration field.

2023-07-18T13:50:15,379           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,379           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,379           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,380           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,380           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,380           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-07-18T13:50:15,381           already explicitly excluding 'moleculekit.share.atomselect' via
2023-07-18T13:50:15,381           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,381           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,381           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,382           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,382           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,383           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,383                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,383                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,383                 directory, all directories are treated like packages.
2023-07-18T13:50:15,383           ********************************************************************************

2023-07-18T13:50:15,384   !!
2023-07-18T13:50:15,384     check.warn(importable)
2023-07-18T13:50:15,384   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-07-18T13:50:15,385   !!

2023-07-18T13:50:15,385           ********************************************************************************
2023-07-18T13:50:15,385           ############################
2023-07-18T13:50:15,385           # Package would be ignored #
2023-07-18T13:50:15,385           ############################
2023-07-18T13:50:15,386           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-07-18T13:50:15,386           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,386           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,386           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-07-18T13:50:15,387           to the `packages` configuration field.

2023-07-18T13:50:15,387           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,387           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,387           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,387           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,388           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,388           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-07-18T13:50:15,388           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-07-18T13:50:15,388           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,388           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,388           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,389           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,389           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,389           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,389                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,389                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,390                 directory, all directories are treated like packages.
2023-07-18T13:50:15,390           ********************************************************************************

2023-07-18T13:50:15,390   !!
2023-07-18T13:50:15,390     check.warn(importable)
2023-07-18T13:50:15,390   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-07-18T13:50:15,390   !!

2023-07-18T13:50:15,391           ********************************************************************************
2023-07-18T13:50:15,391           ############################
2023-07-18T13:50:15,391           # Package would be ignored #
2023-07-18T13:50:15,391           ############################
2023-07-18T13:50:15,391           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-07-18T13:50:15,391           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,391           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,391           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-07-18T13:50:15,392           to the `packages` configuration field.

2023-07-18T13:50:15,392           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,392           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,392           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,392           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,405           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,407           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-07-18T13:50:15,407           already explicitly excluding 'moleculekit.tmalign' via
2023-07-18T13:50:15,407           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,407           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,407           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,407           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,408           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,408           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,408                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,408                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,408                 directory, all directories are treated like packages.
2023-07-18T13:50:15,409           ********************************************************************************

2023-07-18T13:50:15,409   !!
2023-07-18T13:50:15,409     check.warn(importable)
2023-07-18T13:50:15,409   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-07-18T13:50:15,409   !!

2023-07-18T13:50:15,409           ********************************************************************************
2023-07-18T13:50:15,410           ############################
2023-07-18T13:50:15,410           # Package would be ignored #
2023-07-18T13:50:15,410           ############################
2023-07-18T13:50:15,410           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-07-18T13:50:15,410           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,410           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,410           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-07-18T13:50:15,411           to the `packages` configuration field.

2023-07-18T13:50:15,411           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,411           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,411           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,412           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,412           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,412           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-07-18T13:50:15,412           already explicitly excluding 'moleculekit.tmalign.include' via
2023-07-18T13:50:15,413           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,413           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,413           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,414           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,414           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,414           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,415                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,415                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,415                 directory, all directories are treated like packages.
2023-07-18T13:50:15,415           ********************************************************************************

2023-07-18T13:50:15,415   !!
2023-07-18T13:50:15,416     check.warn(importable)
2023-07-18T13:50:15,416   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-07-18T13:50:15,416   !!

2023-07-18T13:50:15,416           ********************************************************************************
2023-07-18T13:50:15,416           ############################
2023-07-18T13:50:15,416           # Package would be ignored #
2023-07-18T13:50:15,417           ############################
2023-07-18T13:50:15,417           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-07-18T13:50:15,417           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,417           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,417           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-07-18T13:50:15,417           to the `packages` configuration field.

2023-07-18T13:50:15,418           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,418           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,418           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,418           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,418           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,419           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-07-18T13:50:15,419           already explicitly excluding 'moleculekit.tmalign.src' via
2023-07-18T13:50:15,419           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,419           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,419           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,419           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,420           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,420           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,420                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,420                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,420                 directory, all directories are treated like packages.
2023-07-18T13:50:15,420           ********************************************************************************

2023-07-18T13:50:15,421   !!
2023-07-18T13:50:15,421     check.warn(importable)
2023-07-18T13:50:15,422   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-07-18T13:50:15,422   !!

2023-07-18T13:50:15,423           ********************************************************************************
2023-07-18T13:50:15,423           ############################
2023-07-18T13:50:15,423           # Package would be ignored #
2023-07-18T13:50:15,424           ############################
2023-07-18T13:50:15,424           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-07-18T13:50:15,424           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,425           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,425           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-07-18T13:50:15,426           to the `packages` configuration field.

2023-07-18T13:50:15,426           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,426           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,427           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,427           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,428           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,428           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-07-18T13:50:15,429           already explicitly excluding 'moleculekit.wrapping' via
2023-07-18T13:50:15,429           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,429           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,429           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,430           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,431           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,431           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,432                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,432                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,432                 directory, all directories are treated like packages.
2023-07-18T13:50:15,432           ********************************************************************************

2023-07-18T13:50:15,433   !!
2023-07-18T13:50:15,433     check.warn(importable)
2023-07-18T13:50:15,434   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-07-18T13:50:15,434   !!

2023-07-18T13:50:15,435           ********************************************************************************
2023-07-18T13:50:15,435           ############################
2023-07-18T13:50:15,435           # Package would be ignored #
2023-07-18T13:50:15,435           ############################
2023-07-18T13:50:15,436           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-07-18T13:50:15,436           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,436           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,437           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-07-18T13:50:15,437           to the `packages` configuration field.

2023-07-18T13:50:15,438           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,438           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,438           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,439           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,439           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,440           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-07-18T13:50:15,440           already explicitly excluding 'moleculekit.xtc_utils' via
2023-07-18T13:50:15,440           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,441           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,441           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,442           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,442           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,443           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,443                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,443                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,443                 directory, all directories are treated like packages.
2023-07-18T13:50:15,444           ********************************************************************************

2023-07-18T13:50:15,444   !!
2023-07-18T13:50:15,444     check.warn(importable)
2023-07-18T13:50:15,444   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-07-18T13:50:15,444   !!

2023-07-18T13:50:15,445           ********************************************************************************
2023-07-18T13:50:15,445           ############################
2023-07-18T13:50:15,445           # Package would be ignored #
2023-07-18T13:50:15,445           ############################
2023-07-18T13:50:15,446           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-07-18T13:50:15,446           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,446           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,446           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-07-18T13:50:15,446           to the `packages` configuration field.

2023-07-18T13:50:15,447           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,447           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,447           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,447           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,448           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,448           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-07-18T13:50:15,448           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-07-18T13:50:15,448           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,448           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,449           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,449           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,449           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,450           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,450                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,450                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,450                 directory, all directories are treated like packages.
2023-07-18T13:50:15,450           ********************************************************************************

2023-07-18T13:50:15,451   !!
2023-07-18T13:50:15,451     check.warn(importable)
2023-07-18T13:50:15,451   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-07-18T13:50:15,451   !!

2023-07-18T13:50:15,452           ********************************************************************************
2023-07-18T13:50:15,452           ############################
2023-07-18T13:50:15,452           # Package would be ignored #
2023-07-18T13:50:15,452           ############################
2023-07-18T13:50:15,452           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-07-18T13:50:15,452           but it is absent from setuptools' `packages` configuration.

2023-07-18T13:50:15,453           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-18T13:50:15,453           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-07-18T13:50:15,453           to the `packages` configuration field.

2023-07-18T13:50:15,453           Alternatively, you can also rely on setuptools' discovery methods
2023-07-18T13:50:15,453           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-18T13:50:15,454           instead of `find_packages(...)`/`find:`).

2023-07-18T13:50:15,454           You can read more about "package discovery" on setuptools documentation page:

2023-07-18T13:50:15,454           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-18T13:50:15,454           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-07-18T13:50:15,455           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-07-18T13:50:15,455           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-18T13:50:15,455           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-18T13:50:15,455           combination with a more fine grained `package-data` configuration.

2023-07-18T13:50:15,456           You can read more about "package data files" on setuptools documentation page:

2023-07-18T13:50:15,456           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-18T13:50:15,457           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-18T13:50:15,458                 even if it does not contain any `.py` files.
2023-07-18T13:50:15,458                 On the other hand, currently there is no concept of package data
2023-07-18T13:50:15,458                 directory, all directories are treated like packages.
2023-07-18T13:50:15,459           ********************************************************************************

2023-07-18T13:50:15,459   !!
2023-07-18T13:50:15,460     check.warn(importable)
2023-07-18T13:50:15,460   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:15,460   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:15,460   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-07-18T13:50:15,461   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-07-18T13:50:15,461   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-07-18T13:50:15,461   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-07-18T13:50:15,462   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-07-18T13:50:15,462   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-07-18T13:50:15,462   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-07-18T13:50:15,462   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-07-18T13:50:15,480   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-07-18T13:50:15,483   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-07-18T13:50:15,484   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-07-18T13:50:15,505   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-07-18T13:50:15,507   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-07-18T13:50:15,507   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-07-18T13:50:15,510   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-07-18T13:50:15,512   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-07-18T13:50:15,717   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-07-18T13:50:15,717   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-07-18T13:50:15,719   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-07-18T13:50:15,720   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,721   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,722   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,725   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,727   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,729   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,730   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,732   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,734   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,736   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,738   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,740   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,742   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,744   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,746   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,748   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,750   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,752   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,754   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,756   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,758   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,760   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,762   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,764   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,766   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,768   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,769   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,771   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,773   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,775   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,777   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,779   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,781   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,783   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,785   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,787   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,789   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,791   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,793   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,795   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,797   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,799   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,801   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,803   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,805   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,807   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,809   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,810   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,812   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,814   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,817   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,819   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,821   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,823   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,825   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,826   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,828   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,830   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,832   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,834   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,836   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,838   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,840   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,842   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,844   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,845   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,848   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,849   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,852   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,853   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,855   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,857   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,859   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,861   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,863   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,865   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,867   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,869   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,871   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,872   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,874   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,876   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,878   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,880   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,882   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,885   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,887   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,889   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,890   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,892   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,894   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,896   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,899   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,900   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,902   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,904   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,906   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,908   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,910   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,912   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,914   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,916   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,918   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,920   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,922   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,924   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,927   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,928   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,930   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,932   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,935   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,937   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,939   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,941   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,943   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,945   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,947   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,949   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,952   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,953   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,955   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,957   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,959   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,961   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,963   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,965   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,967   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,969   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,971   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,973   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,975   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,977   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,979   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,981   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,983   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,985   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,987   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,989   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,991   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,994   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,996   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:15,998   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,000   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,002   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,004   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,006   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,008   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,010   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,012   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,014   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,016   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,018   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,020   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,022   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,024   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,026   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,029   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,031   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,033   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,035   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,037   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,039   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,041   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,043   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,045   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,047   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,049   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,050   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,053   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,055   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,057   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,059   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,062   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,064   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,066   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,068   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-07-18T13:50:16,070   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-07-18T13:50:16,071   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-07-18T13:50:16,088   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-07-18T13:50:16,091   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-07-18T13:50:16,092   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-07-18T13:50:16,093   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-07-18T13:50:16,095   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-07-18T13:50:16,096   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-07-18T13:50:16,103   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-07-18T13:50:16,103   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-07-18T13:50:16,123   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-07-18T13:50:16,125   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-07-18T13:50:16,126   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-07-18T13:50:16,145   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-07-18T13:50:16,147   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-07-18T13:50:16,149   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-07-18T13:50:16,150   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-07-18T13:50:16,153   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-07-18T13:50:16,155   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-07-18T13:50:16,157   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-07-18T13:50:16,157   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-07-18T13:50:16,161   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-07-18T13:50:16,163   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-07-18T13:50:16,165   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-07-18T13:50:16,166   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-07-18T13:50:16,185   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-07-18T13:50:16,187   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-07-18T13:50:16,188   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-07-18T13:50:16,208   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-07-18T13:50:16,211   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-07-18T13:50:16,212   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-07-18T13:50:16,232   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-07-18T13:50:16,234   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-07-18T13:50:16,235   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-07-18T13:50:16,257   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-07-18T13:50:16,269   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-07-18T13:50:16,269   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.4'
2023-07-18T13:50:16,269   running build_ext
2023-07-18T13:50:16,280   building 'moleculekit.interactions.hbonds' extension
2023-07-18T13:50:16,281   creating build/temp.linux-armv7l-cpython-39
2023-07-18T13:50:16,282   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-07-18T13:50:16,282   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-07-18T13:50:16,283   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-07-18T13:50:16,284   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-07-18T13:50:16,575   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:50:16,576                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:50:16,576                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:50:16,576                    from moleculekit/interactions/hbonds/hbonds.cpp:1122:
2023-07-18T13:50:16,576   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:50:16,576      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:50:16,576         |  ^~~~~~~
2023-07-18T13:50:42,477   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:50:42,790   building 'moleculekit.interactions.pipi' extension
2023-07-18T13:50:42,791   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-07-18T13:50:42,792   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-07-18T13:50:43,026   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:50:43,026                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:50:43,027                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:50:43,027                    from moleculekit/interactions/pipi/pipi.cpp:1122:
2023-07-18T13:50:43,027   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:50:43,027      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:50:43,027         |  ^~~~~~~
2023-07-18T13:51:10,986   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:51:11,300   building 'moleculekit.interactions.cationpi' extension
2023-07-18T13:51:11,301   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-07-18T13:51:11,301   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-07-18T13:51:11,535   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:51:11,535                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:51:11,536                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:51:11,536                    from moleculekit/interactions/cationpi/cationpi.cpp:1122:
2023-07-18T13:51:11,536   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:51:11,536      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:51:11,536         |  ^~~~~~~
2023-07-18T13:51:39,003   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:51:39,319   building 'moleculekit.interactions.sigmahole' extension
2023-07-18T13:51:39,319   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-07-18T13:51:39,320   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-07-18T13:51:39,590   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:51:39,590                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:51:39,590                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:51:39,590                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1122:
2023-07-18T13:51:39,591   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:51:39,591      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:51:39,591         |  ^~~~~~~
2023-07-18T13:52:06,793   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:52:07,119   building 'moleculekit.wrapping' extension
2023-07-18T13:52:07,119   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-07-18T13:52:07,120   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-07-18T13:52:07,382   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:52:07,383                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:52:07,383                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:52:07,383                    from moleculekit/wrapping/wrapping.cpp:1122:
2023-07-18T13:52:07,383   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:52:07,383      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:52:07,383         |  ^~~~~~~
2023-07-18T13:52:30,983   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:52:31,194   building 'moleculekit.bondguesser_utils' extension
2023-07-18T13:52:31,195   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-07-18T13:52:31,195   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-07-18T13:52:31,426   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:52:31,427                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:52:31,427                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:52:31,427                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1122:
2023-07-18T13:52:31,427   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:52:31,427      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:52:31,427         |  ^~~~~~~
2023-07-18T13:52:32,982   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-07-18T13:52:32,982   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19262:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-07-18T13:52:32,982   19262 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-07-18T13:52:32,983         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-07-18T13:52:32,983   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19274:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-07-18T13:52:32,983   19274 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-07-18T13:52:32,983         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-07-18T13:52:32,983   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19286:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-07-18T13:52:32,983   19286 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-07-18T13:52:32,984         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-07-18T13:52:32,984   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19325:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,984   19325 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-07-18T13:52:32,984         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,984   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19364:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,984   19364 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-07-18T13:52:32,985         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,985   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19403:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,985   19403 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,985         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,985   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19442:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,985   19442 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-07-18T13:52:32,985         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,986   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19448:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,986   19448 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-07-18T13:52:32,986         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,986   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19489:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,986   19489 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-07-18T13:52:32,986         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,986   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19495:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,987   19495 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,987         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,987   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19536:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,987   19536 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-07-18T13:52:32,987         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,987   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19542:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,987   19542 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,988         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,988   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19583:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,988   19583 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-07-18T13:52:32,988         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,988   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19636:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,988   19636 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,988         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,989   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19683:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,989   19683 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,989         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,989   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19724:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,989   19724 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-07-18T13:52:32,989         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,989   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19730:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,990   19730 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-07-18T13:52:32,990         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,990   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19736:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,990   19736 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,990         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,990   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19783:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,990   19783 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-07-18T13:52:32,991         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,991   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,991   19789 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,991         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,991   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19830:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,991   19830 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-07-18T13:52:32,991         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,991   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19842:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,992   19842 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,992         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:32,992   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19895:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-07-18T13:52:32,992   19895 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-07-18T13:52:32,992         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:52:33,010   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-07-18T13:52:33,011   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20477:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-07-18T13:52:33,011   20477 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-07-18T13:52:33,011         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-07-18T13:52:33,011   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20514:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-07-18T13:52:33,011   20514 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-07-18T13:52:33,012         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-07-18T13:52:55,926   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:52:56,231   building 'moleculekit.atomselect_utils' extension
2023-07-18T13:52:56,232   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-07-18T13:52:56,232   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-07-18T13:52:56,470   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:52:56,470                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:52:56,471                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:52:56,471                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1139:
2023-07-18T13:52:56,471   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:52:56,471      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:52:56,471         |  ^~~~~~~
2023-07-18T13:52:58,199   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-07-18T13:52:58,199   moleculekit/atomselect_utils/atomselect_utils.cpp:23248:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-07-18T13:52:58,199   23248 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-07-18T13:52:58,200         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-07-18T13:52:58,205   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-07-18T13:52:58,205   moleculekit/atomselect_utils/atomselect_utils.cpp:23503:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-07-18T13:52:58,206   23503 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-07-18T13:52:58,206         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-07-18T13:52:58,211   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-07-18T13:52:58,212   moleculekit/atomselect_utils/atomselect_utils.cpp:23773:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-07-18T13:52:58,212   23773 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-07-18T13:52:58,212         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-07-18T13:53:28,725   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:53:29,062   building 'moleculekit.distance_utils' extension
2023-07-18T13:53:29,063   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-07-18T13:53:29,063   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-07-18T13:53:29,314   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:53:29,314                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:53:29,314                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:53:29,315                    from moleculekit/distance_utils/distance_utils.cpp:1122:
2023-07-18T13:53:29,315   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:53:29,315      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:53:29,315         |  ^~~~~~~
2023-07-18T13:54:01,482   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:54:01,806   building 'moleculekit.occupancy_utils' extension
2023-07-18T13:54:01,807   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-07-18T13:54:01,807   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-07-18T13:54:02,040   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:54:02,040                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:54:02,040                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:54:02,041                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1122:
2023-07-18T13:54:02,041   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:54:02,041      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:54:02,041         |  ^~~~~~~
2023-07-18T13:54:24,931   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:54:25,141   building 'moleculekit.xtc' extension
2023-07-18T13:54:25,142   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-07-18T13:54:25,143   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-07-18T13:54:25,144   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-07-18T13:54:25,384   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,384      66 |  "OK",
2023-07-18T13:54:25,384         |  ^~~~
2023-07-18T13:54:25,385   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,385      67 |  "Header",
2023-07-18T13:54:25,385         |  ^~~~~~~~
2023-07-18T13:54:25,385   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,385      68 |  "String",
2023-07-18T13:54:25,386         |  ^~~~~~~~
2023-07-18T13:54:25,386   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,386      69 |  "Double",
2023-07-18T13:54:25,386         |  ^~~~~~~~
2023-07-18T13:54:25,386   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,386      70 |  "Integer",
2023-07-18T13:54:25,386         |  ^~~~~~~~~
2023-07-18T13:54:25,387   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,387      71 |  "Float",
2023-07-18T13:54:25,387         |  ^~~~~~~
2023-07-18T13:54:25,387   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,387      72 |  "Unsigned integer",
2023-07-18T13:54:25,387         |  ^~~~~~~~~~~~~~~~~~
2023-07-18T13:54:25,387   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,387      73 |  "Compressed 3D coordinate",
2023-07-18T13:54:25,388         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:54:25,388   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,388      74 |  "Closing file",
2023-07-18T13:54:25,388         |  ^~~~~~~~~~~~~~
2023-07-18T13:54:25,388   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,388      75 |  "Magic number",
2023-07-18T13:54:25,389         |  ^~~~~~~~~~~~~~
2023-07-18T13:54:25,389   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,389      76 |  "Not enough memory",
2023-07-18T13:54:25,389         |  ^~~~~~~~~~~~~~~~~~~
2023-07-18T13:54:25,389   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,389      77 |  "End of file",
2023-07-18T13:54:25,389         |  ^~~~~~~~~~~~~
2023-07-18T13:54:25,390   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-07-18T13:54:25,390      78 |  "File not found"
2023-07-18T13:54:25,390         |  ^~~~~~~~~~~~~~~~
2023-07-18T13:54:25,394   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-07-18T13:54:25,394   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,394     459 |     while (size >= num && num_of_bits < 32)
2023-07-18T13:54:25,394         |            ~~~~~^~~~~~
2023-07-18T13:54:25,395   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-07-18T13:54:25,395   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,395     505 |     while (bytes[num_of_bytes] >= num)
2023-07-18T13:54:25,395         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-07-18T13:54:25,397   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-07-18T13:54:25,397   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,397     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-07-18T13:54:25,397         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-07-18T13:54:25,398   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,398     616 |   for (i = 0; i < num_of_bytes; i++)
2023-07-18T13:54:25,398         |               ~~^~~~~~~~~~~~~~
2023-07-18T13:54:25,398   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,398     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-07-18T13:54:25,398         |               ~~^~~~~~~~~~~~~~~~
2023-07-18T13:54:25,399   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-07-18T13:54:25,399   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,399     664 |   if (lastbits < num_of_bits)
2023-07-18T13:54:25,399         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-07-18T13:54:25,402   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-07-18T13:54:25,402   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,402     785 |  if(size3>xfp->buf1size)
2023-07-18T13:54:25,403         |     ~~~~~^~~~~~~~~~~~~~
2023-07-18T13:54:25,404   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,404     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-07-18T13:54:25,404         |                   ^
2023-07-18T13:54:25,407   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,407     932 |     if(countmjh >= size3 ) { return -1; }
2023-07-18T13:54:25,407         |        ~~~~~~~~~^~~~~~~~
2023-07-18T13:54:25,407   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,407     935 |     if(countmjh >= size3 ) { return -1; }
2023-07-18T13:54:25,408         |        ~~~~~~~~~^~~~~~~~
2023-07-18T13:54:25,408   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,408     938 |     if(countmjh >= size3 ) { return -1; }
2023-07-18T13:54:25,408         |        ~~~~~~~~~^~~~~~~~
2023-07-18T13:54:25,408   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,408     945 |     if(countmjh >= size3 ) { return -1; }
2023-07-18T13:54:25,408         |        ~~~~~~~~~^~~~~~~~
2023-07-18T13:54:25,408   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,409     948 |     if(countmjh >= size3 ) { return -1; }
2023-07-18T13:54:25,409         |        ~~~~~~~~~^~~~~~~~
2023-07-18T13:54:25,409   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,409     951 |     if(countmjh >= size3 ) { return -1; }
2023-07-18T13:54:25,409         |        ~~~~~~~~~^~~~~~~~
2023-07-18T13:54:25,409   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-07-18T13:54:25,409     756 |  int smallidx,  minidx, maxidx;
2023-07-18T13:54:25,409         |                 ^~~~~~
2023-07-18T13:54:25,410   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-07-18T13:54:25,410     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-07-18T13:54:25,410         |                         ^~~~~~
2023-07-18T13:54:25,410   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-07-18T13:54:25,410     763 |  int errval=1;
2023-07-18T13:54:25,410         |      ^~~~~~
2023-07-18T13:54:25,411   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-07-18T13:54:25,411   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,411    1011 |  if(size3>xfp->buf1size)
2023-07-18T13:54:25,411         |     ~~~~~^~~~~~~~~~~~~~
2023-07-18T13:54:25,413   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,413    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-07-18T13:54:25,413         |                     ~~~~~~~~^~~~~~~
2023-07-18T13:54:25,414   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,414    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-07-18T13:54:25,414         |                    ~~~~~~~~^~~~~~~
2023-07-18T13:54:25,414   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,415    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-07-18T13:54:25,415         |                    ~~~~~~~~^~~~~~~
2023-07-18T13:54:25,416   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,416    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-07-18T13:54:25,416         |                  ^
2023-07-18T13:54:25,417   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,417    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-07-18T13:54:25,417         |                   ^
2023-07-18T13:54:25,420   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,420    1275 |  if(tmp==(unsigned int)buf2[0])
2023-07-18T13:54:25,421         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:54:25,421   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-07-18T13:54:25,421    1001 |  int errval;
2023-07-18T13:54:25,421         |      ^~~~~~
2023-07-18T13:54:25,423   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-07-18T13:54:25,424   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,424    1316 |  if(size3>xfp->buf1size)
2023-07-18T13:54:25,424         |     ~~~~~^~~~~~~~~~~~~~
2023-07-18T13:54:25,425   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,426    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-07-18T13:54:25,426         |                   ^
2023-07-18T13:54:25,428   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-07-18T13:54:25,428    1289 |  int smallidx,  maxidx, minidx;
2023-07-18T13:54:25,429         |                         ^~~~~~
2023-07-18T13:54:25,429   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-07-18T13:54:25,429    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-07-18T13:54:25,429         |                         ^~~~~~
2023-07-18T13:54:25,429   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-07-18T13:54:25,429    1297 |  int errval=1;
2023-07-18T13:54:25,429         |      ^~~~~~
2023-07-18T13:54:25,430   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-07-18T13:54:25,431   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,431    1513 |  if(size3>xfp->buf1size) {
2023-07-18T13:54:25,431         |     ~~~~~^~~~~~~~~~~~~~
2023-07-18T13:54:25,435   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,435    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-07-18T13:54:25,435         |                  ^
2023-07-18T13:54:25,435   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-07-18T13:54:25,436    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-07-18T13:54:25,436         |                   ^
2023-07-18T13:54:25,439   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-07-18T13:54:25,439    1743 |  if(tmp==(unsigned int)buf2[0])
2023-07-18T13:54:25,439         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-07-18T13:54:25,440   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-07-18T13:54:25,440    1504 |  int errval=1;
2023-07-18T13:54:25,440         |      ^~~~~~
2023-07-18T13:54:27,694   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-07-18T13:54:27,948   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-07-18T13:54:28,519   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-07-18T13:54:28,519   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-07-18T13:54:28,519     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-07-18T13:54:28,519         |      ^~~
2023-07-18T13:54:28,526   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-07-18T13:54:28,526   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-07-18T13:54:28,526     418 |  int nf3 = nframes * 3;
2023-07-18T13:54:28,526         |      ^~~
2023-07-18T13:54:28,530   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-07-18T13:54:28,531   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-07-18T13:54:28,531     491 |  int reading_index = 0;
2023-07-18T13:54:28,531         |      ^~~~~~~~~~~~~
2023-07-18T13:54:28,531   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-07-18T13:54:28,531     492 |  int writing_index = 0;
2023-07-18T13:54:28,531         |      ^~~~~~~~~~~~~
2023-07-18T13:54:29,291   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-07-18T13:54:29,520   In file included from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-07-18T13:54:29,521                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-07-18T13:54:29,521                    from /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-07-18T13:54:29,521                    from moleculekit/xtc_utils/xtc.cpp:1126:
2023-07-18T13:54:29,521   /tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-07-18T13:54:29,521      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-07-18T13:54:29,521         |  ^~~~~~~
2023-07-18T13:54:49,630   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:54:49,942   building 'moleculekit.tmalign' extension
2023-07-18T13:54:49,943   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-07-18T13:54:49,944   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-07-18T13:54:49,945   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-07-18T13:55:19,400   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2sax6p3r/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-07-18T13:55:37,948   In file included from /usr/include/c++/10/vector:72,
2023-07-18T13:55:37,948                    from moleculekit/tmalign/tmalign_util.cpp:1137:
2023-07-18T13:55:37,948   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-07-18T13:55:37,948   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-07-18T13:55:37,948     426 |       vector<_Tp, _Alloc>::
2023-07-18T13:55:37,949         |       ^~~~~~~~~~~~~~~~~~~
2023-07-18T13:55:38,528   In file included from /usr/include/c++/10/vector:67,
2023-07-18T13:55:38,529                    from moleculekit/tmalign/tmalign_util.cpp:1137:
2023-07-18T13:55:38,529   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-07-18T13:55:38,529   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-07-18T13:55:38,529    1198 |    _M_realloc_insert(end(), __x);
2023-07-18T13:55:38,529         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-07-18T13:55:38,530   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-07-18T13:55:38,530    1198 |    _M_realloc_insert(end(), __x);
2023-07-18T13:55:38,530         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-07-18T13:55:38,530   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-07-18T13:55:38,530    1198 |    _M_realloc_insert(end(), __x);
2023-07-18T13:55:38,531         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-07-18T13:55:40,945   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-07-18T13:55:41,422   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-07-18T13:55:41,422   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.4'
2023-07-18T13:55:41,422   installing to build/bdist.linux-armv7l/wheel
2023-07-18T13:55:41,423   running install
2023-07-18T13:55:41,449   running install_lib
2023-07-18T13:55:41,455   creating build/bdist.linux-armv7l
2023-07-18T13:55:41,456   creating build/bdist.linux-armv7l/wheel
2023-07-18T13:55:41,458   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,460   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-07-18T13:55:41,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-07-18T13:55:41,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-07-18T13:55:41,490   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,523   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-07-18T13:55:41,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-07-18T13:55:41,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-07-18T13:55:41,529   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-07-18T13:55:41,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-07-18T13:55:41,534   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-07-18T13:55:41,535   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-07-18T13:55:41,539   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-07-18T13:55:41,540   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-07-18T13:55:41,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-07-18T13:55:41,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-07-18T13:55:41,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-07-18T13:55:41,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-07-18T13:55:41,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-07-18T13:55:41,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-07-18T13:55:41,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-07-18T13:55:41,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-07-18T13:55:41,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,570   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-07-18T13:55:41,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-07-18T13:55:41,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-07-18T13:55:41,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,624   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-07-18T13:55:41,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-07-18T13:55:41,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-07-18T13:55:41,654   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-07-18T13:55:41,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-07-18T13:55:41,657   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-07-18T13:55:41,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,792   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-07-18T13:55:41,793   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-07-18T13:55:41,794   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-07-18T13:55:41,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-07-18T13:55:41,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-07-18T13:55:41,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-07-18T13:55:41,803   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-07-18T13:55:41,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-07-18T13:55:41,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-07-18T13:55:41,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-07-18T13:55:41,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-07-18T13:55:41,813   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-07-18T13:55:41,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-07-18T13:55:41,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-07-18T13:55:41,818   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-07-18T13:55:41,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:41,823   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-07-18T13:55:41,824   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-07-18T13:55:41,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-07-18T13:55:41,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-07-18T13:55:41,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-07-18T13:55:41,871   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-07-18T13:55:41,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-07-18T13:55:41,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-07-18T13:55:41,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-07-18T13:55:41,955   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-07-18T13:55:41,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-07-18T13:55:41,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-07-18T13:55:41,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-07-18T13:55:41,989   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-07-18T13:55:41,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-07-18T13:55:41,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-07-18T13:55:42,016   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-07-18T13:55:42,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-07-18T13:55:42,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-07-18T13:55:42,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,127   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-07-18T13:55:42,129   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-07-18T13:55:42,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-07-18T13:55:42,132   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-07-18T13:55:42,137   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,140   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,142   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,188   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,202   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,213   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,215   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,217   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,237   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,245   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,246   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,248   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,250   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,252   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,273   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,276   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,280   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,284   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,303   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,312   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,314   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,319   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,322   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-07-18T13:55:42,325   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,331   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,338   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,340   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,343   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,352   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,357   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,361   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,365   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,369   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,376   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,378   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,386   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,428   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,432   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,434   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,442   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-07-18T13:55:42,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-07-18T13:55:42,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-07-18T13:55:42,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-07-18T13:55:42,708   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,713   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,718   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,723   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,725   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,728   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-07-18T13:55:42,729   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-07-18T13:55:42,731   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-07-18T13:55:42,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,736   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-07-18T13:55:42,753   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,771   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,777   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,783   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,792   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-07-18T13:55:42,795   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,824   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-07-18T13:55:42,825   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-07-18T13:55:42,827   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-07-18T13:55:42,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-07-18T13:55:42,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-07-18T13:55:42,836   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-07-18T13:55:42,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-07-18T13:55:42,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-07-18T13:55:42,868   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-07-18T13:55:42,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-07-18T13:55:42,871   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-07-18T13:55:42,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-07-18T13:55:42,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,879   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-07-18T13:55:42,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-07-18T13:55:42,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-07-18T13:55:42,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-07-18T13:55:42,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,908   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-07-18T13:55:42,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-07-18T13:55:42,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-07-18T13:55:42,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-07-18T13:55:42,948   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-07-18T13:55:42,950   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-07-18T13:55:42,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-07-18T13:55:42,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-07-18T13:55:42,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-07-18T13:55:42,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-07-18T13:55:42,979   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-07-18T13:55:42,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-07-18T13:55:42,981   running install_egg_info
2023-07-18T13:55:42,988   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.4-py3.9.egg-info
2023-07-18T13:55:43,000   running install_scripts
2023-07-18T13:55:43,048   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.4.dist-info/WHEEL
2023-07-18T13:55:43,051   creating '/tmp/pip-wheel-swu_wuy1/.tmp-v9coaycy/moleculekit-1.7.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-07-18T13:55:43,054   adding 'moleculekit/__init__.py'
2023-07-18T13:55:43,055   adding 'moleculekit/_version.py'
2023-07-18T13:55:43,057   adding 'moleculekit/align.py'
2023-07-18T13:55:43,371   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:43,383   adding 'moleculekit/bondguesser.py'
2023-07-18T13:55:43,625   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:43,634   adding 'moleculekit/config.py'
2023-07-18T13:55:43,635   adding 'moleculekit/dihedral.py'
2023-07-18T13:55:43,636   adding 'moleculekit/distance.py'
2023-07-18T13:55:43,942   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:43,953   adding 'moleculekit/home.py'
2023-07-18T13:55:43,955   adding 'moleculekit/logging.ini'
2023-07-18T13:55:43,968   adding 'moleculekit/molecule.py'
2023-07-18T13:55:44,192   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:44,201   adding 'moleculekit/opm.py'
2023-07-18T13:55:44,203   adding 'moleculekit/periodictable.py'
2023-07-18T13:55:44,204   adding 'moleculekit/pymolgraphics.py'
2023-07-18T13:55:44,206   adding 'moleculekit/rcsb.py'
2023-07-18T13:55:44,207   adding 'moleculekit/rdkitintegration.py'
2023-07-18T13:55:44,219   adding 'moleculekit/readers.py'
2023-07-18T13:55:44,825   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:44,849   adding 'moleculekit/util.py'
2023-07-18T13:55:44,850   adding 'moleculekit/version.py'
2023-07-18T13:55:44,852   adding 'moleculekit/viewer.py'
2023-07-18T13:55:44,853   adding 'moleculekit/vmd_wrapper'
2023-07-18T13:55:44,855   adding 'moleculekit/vmdgraphics.py'
2023-07-18T13:55:44,857   adding 'moleculekit/vmdviewer.py'
2023-07-18T13:55:45,089   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:45,101   adding 'moleculekit/writers.py'
2023-07-18T13:55:45,368   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:45,378   adding 'moleculekit/atomselect/__init__.py'
2023-07-18T13:55:45,380   adding 'moleculekit/atomselect/analyze.py'
2023-07-18T13:55:45,382   adding 'moleculekit/atomselect/atomselect.py'
2023-07-18T13:55:45,384   adding 'moleculekit/atomselect/languageparser.py'
2023-07-18T13:55:45,486   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-07-18T13:55:45,497   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-07-18T13:55:45,586   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-07-18T13:55:45,595   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-07-18T13:55:45,691   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-07-18T13:55:45,701   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-07-18T13:55:45,703   adding 'moleculekit/interactions/__init__.py'
2023-07-18T13:55:45,984   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:46,251   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:46,262   adding 'moleculekit/interactions/interactions.py'
2023-07-18T13:55:46,543   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:46,830   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-07-18T13:55:46,928   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-07-18T13:55:46,937   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-07-18T13:55:47,026   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-07-18T13:55:47,035   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-07-18T13:55:47,125   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-07-18T13:55:47,133   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-07-18T13:55:47,223   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-07-18T13:55:47,232   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-07-18T13:55:47,317   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-07-18T13:55:47,325   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-07-18T13:55:47,327   adding 'moleculekit/pdbx/__init__.py'
2023-07-18T13:55:47,331   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-07-18T13:55:47,334   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-07-18T13:55:47,336   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-07-18T13:55:47,337   adding 'moleculekit/pdbx/reader/__init__.py'
2023-07-18T13:55:47,339   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-07-18T13:55:47,341   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-07-18T13:55:47,342   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-07-18T13:55:47,343   adding 'moleculekit/pdbx/tests/__init__.py'
2023-07-18T13:55:47,346   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-07-18T13:55:47,347   adding 'moleculekit/pdbx/writer/__init__.py'
2023-07-18T13:55:47,348   adding 'moleculekit/ply/__init__.py'
2023-07-18T13:55:47,353   adding 'moleculekit/ply/lex.py'
2023-07-18T13:55:47,364   adding 'moleculekit/ply/yacc.py'
2023-07-18T13:55:47,367   adding 'moleculekit/projections/__init__.py'
2023-07-18T13:55:47,369   adding 'moleculekit/projections/metriccoordinate.py'
2023-07-18T13:55:47,373   adding 'moleculekit/projections/metricdihedral.py'
2023-07-18T13:55:47,377   adding 'moleculekit/projections/metricdistance.py'
2023-07-18T13:55:47,379   adding 'moleculekit/projections/metricfluctuation.py'
2023-07-18T13:55:47,381   adding 'moleculekit/projections/metricgyration.py'
2023-07-18T13:55:47,385   adding 'moleculekit/projections/metricplumed2.py'
2023-07-18T13:55:47,386   adding 'moleculekit/projections/metricrmsd.py'
2023-07-18T13:55:47,389   adding 'moleculekit/projections/metricsasa.py'
2023-07-18T13:55:47,391   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-07-18T13:55:47,392   adding 'moleculekit/projections/metricshell.py'
2023-07-18T13:55:47,394   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-07-18T13:55:47,396   adding 'moleculekit/projections/metrictmscore.py'
2023-07-18T13:55:47,397   adding 'moleculekit/projections/projection.py'
2023-07-18T13:55:47,399   adding 'moleculekit/projections/util.py'
2023-07-18T13:55:47,401   adding 'moleculekit/share/ALA.cif'
2023-07-18T13:55:47,402   adding 'moleculekit/share/backbone.cif'
2023-07-18T13:55:48,719   adding 'moleculekit/share/opm_sequences.json'
2023-07-18T13:55:48,804   adding 'moleculekit/share/atomselect/atomselect.json'
2023-07-18T13:55:48,809   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-07-18T13:55:48,810   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-07-18T13:55:48,812   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-07-18T13:55:48,813   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-07-18T13:55:48,814   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-07-18T13:55:48,815   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-07-18T13:55:48,817   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-07-18T13:55:48,818   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-07-18T13:55:48,819   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-07-18T13:55:48,820   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-07-18T13:55:48,822   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-07-18T13:55:48,823   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-07-18T13:55:48,824   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-07-18T13:55:48,825   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-07-18T13:55:48,827   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-07-18T13:55:48,828   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-07-18T13:55:48,829   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-07-18T13:55:48,830   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-07-18T13:55:48,832   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-07-18T13:55:48,833   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-07-18T13:55:48,834   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-07-18T13:55:48,835   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-07-18T13:55:48,837   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-07-18T13:55:48,838   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-07-18T13:55:48,839   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-07-18T13:55:48,840   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-07-18T13:55:48,842   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-07-18T13:55:48,843   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-07-18T13:55:48,844   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-07-18T13:55:48,846   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-07-18T13:55:48,847   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-07-18T13:55:48,848   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-07-18T13:55:48,850   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-07-18T13:55:48,851   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-07-18T13:55:48,852   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-07-18T13:55:48,853   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-07-18T13:55:48,855   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-07-18T13:55:48,856   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-07-18T13:55:48,857   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-07-18T13:55:48,859   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-07-18T13:55:48,860   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-07-18T13:55:48,861   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-07-18T13:55:48,862   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-07-18T13:55:48,864   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-07-18T13:55:48,865   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-07-18T13:55:48,866   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-07-18T13:55:48,867   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-07-18T13:55:48,869   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-07-18T13:55:48,870   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-07-18T13:55:48,871   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-07-18T13:55:48,872   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-07-18T13:55:48,874   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-07-18T13:55:48,875   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-07-18T13:55:48,876   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-07-18T13:55:48,877   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-07-18T13:55:48,879   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-07-18T13:55:48,880   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-07-18T13:55:48,881   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-07-18T13:55:48,882   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-07-18T13:55:48,883   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-07-18T13:55:48,885   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-07-18T13:55:48,886   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-07-18T13:55:48,887   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-07-18T13:55:48,888   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-07-18T13:55:48,890   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-07-18T13:55:48,891   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-07-18T13:55:48,892   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-07-18T13:55:48,893   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-07-18T13:55:48,894   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-07-18T13:55:48,896   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-07-18T13:55:48,897   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-07-18T13:55:48,898   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-07-18T13:55:48,899   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-07-18T13:55:48,901   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-07-18T13:55:48,902   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-07-18T13:55:48,903   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-07-18T13:55:48,904   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-07-18T13:55:48,906   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-07-18T13:55:48,907   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-07-18T13:55:48,908   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-07-18T13:55:48,909   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-07-18T13:55:48,910   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-07-18T13:55:48,912   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-07-18T13:55:48,913   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-07-18T13:55:48,914   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-07-18T13:55:48,916   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-07-18T13:55:48,917   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-07-18T13:55:48,918   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-07-18T13:55:48,920   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-07-18T13:55:48,921   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-07-18T13:55:48,922   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-07-18T13:55:48,923   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-07-18T13:55:48,924   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-07-18T13:55:48,926   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-07-18T13:55:48,927   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-07-18T13:55:48,928   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-07-18T13:55:48,929   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-07-18T13:55:48,930   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-07-18T13:55:48,932   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-07-18T13:55:48,933   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-07-18T13:55:48,934   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-07-18T13:55:48,935   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-07-18T13:55:48,937   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-07-18T13:55:48,938   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-07-18T13:55:48,939   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-07-18T13:55:48,940   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-07-18T13:55:48,941   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-07-18T13:55:48,943   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-07-18T13:55:48,944   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-07-18T13:55:48,945   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-07-18T13:55:48,946   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-07-18T13:55:48,947   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-07-18T13:55:48,949   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-07-18T13:55:48,950   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-07-18T13:55:48,951   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-07-18T13:55:48,953   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-07-18T13:55:48,956   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-07-18T13:55:48,957   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-07-18T13:55:48,958   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-07-18T13:55:48,960   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-07-18T13:55:48,961   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-07-18T13:55:48,962   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-07-18T13:55:48,963   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-07-18T13:55:48,965   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-07-18T13:55:48,966   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-07-18T13:55:48,967   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-07-18T13:55:48,968   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-07-18T13:55:48,970   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-07-18T13:55:48,971   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-07-18T13:55:48,972   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-07-18T13:55:48,973   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-07-18T13:55:48,975   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-07-18T13:55:48,976   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-07-18T13:55:48,977   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-07-18T13:55:48,978   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-07-18T13:55:48,980   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-07-18T13:55:48,981   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-07-18T13:55:48,982   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-07-18T13:55:48,984   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-07-18T13:55:48,985   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-07-18T13:55:48,986   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-07-18T13:55:48,987   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-07-18T13:55:48,988   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-07-18T13:55:48,990   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-07-18T13:55:48,991   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-07-18T13:55:48,992   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-07-18T13:55:48,993   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-07-18T13:55:48,995   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-07-18T13:55:48,996   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-07-18T13:55:48,997   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-07-18T13:55:48,998   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-07-18T13:55:48,999   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-07-18T13:55:49,001   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-07-18T13:55:49,002   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-07-18T13:55:49,003   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-07-18T13:55:49,005   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-07-18T13:55:49,006   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-07-18T13:55:49,007   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-07-18T13:55:49,008   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-07-18T13:55:49,010   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-07-18T13:55:49,011   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-07-18T13:55:49,012   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-07-18T13:55:49,013   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-07-18T13:55:49,014   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-07-18T13:55:49,016   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-07-18T13:55:49,017   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-07-18T13:55:49,018   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-07-18T13:55:49,019   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-07-18T13:55:49,021   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-07-18T13:55:49,022   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-07-18T13:55:49,023   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-07-18T13:55:49,024   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-07-18T13:55:49,026   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-07-18T13:55:49,027   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-07-18T13:55:49,028   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-07-18T13:55:49,030   adding 'moleculekit/smallmol/__init__.py'
2023-07-18T13:55:49,035   adding 'moleculekit/smallmol/smallmol.py'
2023-07-18T13:55:49,037   adding 'moleculekit/smallmol/smallmollib.py'
2023-07-18T13:55:49,039   adding 'moleculekit/smallmol/test_smallmol.py'
2023-07-18T13:55:49,041   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-07-18T13:55:49,043   adding 'moleculekit/smallmol/util.py'
2023-07-18T13:55:49,045   adding 'moleculekit/smallmol/tools/__init__.py'
2023-07-18T13:55:49,046   adding 'moleculekit/smallmol/tools/clustering.py'
2023-07-18T13:55:49,048   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-07-18T13:55:49,050   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-07-18T13:55:49,138   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-07-18T13:55:49,146   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-07-18T13:55:49,147   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-07-18T13:55:49,149   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-07-18T13:55:49,166   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-07-18T13:55:49,169   adding 'moleculekit/tools/__init__.py'
2023-07-18T13:55:49,172   adding 'moleculekit/tools/atomtyper.py'
2023-07-18T13:55:49,174   adding 'moleculekit/tools/autosegment.py'
2023-07-18T13:55:49,176   adding 'moleculekit/tools/crystalpacking.py'
2023-07-18T13:55:49,178   adding 'moleculekit/tools/detect.py'
2023-07-18T13:55:49,180   adding 'moleculekit/tools/docking.py'
2023-07-18T13:55:49,182   adding 'moleculekit/tools/graphalignment.py'
2023-07-18T13:55:49,184   adding 'moleculekit/tools/hhblitsprofile.py'
2023-07-18T13:55:49,186   adding 'moleculekit/tools/moleculechecks.py'
2023-07-18T13:55:49,192   adding 'moleculekit/tools/preparation.py'
2023-07-18T13:55:49,194   adding 'moleculekit/tools/preparation_customres.py'
2023-07-18T13:55:49,196   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-07-18T13:55:49,199   adding 'moleculekit/tools/voxeldescriptors.py'
2023-07-18T13:55:49,201   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-07-18T13:55:49,202   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-07-18T13:55:49,288   adding 'moleculekit/wrapping/wrapping.cpp'
2023-07-18T13:55:49,296   adding 'moleculekit/wrapping/wrapping.pyx'
2023-07-18T13:55:49,383   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-07-18T13:55:49,392   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-07-18T13:55:49,393   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-07-18T13:55:49,397   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-07-18T13:55:49,398   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-07-18T13:55:49,399   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-07-18T13:55:49,406   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-07-18T13:55:49,408   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-07-18T13:55:49,410   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-07-18T13:55:49,413   adding 'moleculekit-1.7.4.dist-info/LICENSE'
2023-07-18T13:55:49,414   adding 'moleculekit-1.7.4.dist-info/METADATA'
2023-07-18T13:55:49,415   adding 'moleculekit-1.7.4.dist-info/WHEEL'
2023-07-18T13:55:49,416   adding 'moleculekit-1.7.4.dist-info/top_level.txt'
2023-07-18T13:55:49,421   adding 'moleculekit-1.7.4.dist-info/RECORD'
2023-07-18T13:55:49,559   removing build/bdist.linux-armv7l/wheel
2023-07-18T13:55:49,839   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-07-18T13:55:50,119   Created wheel for moleculekit: filename=moleculekit-1.7.4-cp39-cp39-linux_armv7l.whl size=12465379 sha256=7e516597617d5a3557d04f7a077aadf7a97bdb27cb884149bf0336d95b794730
2023-07-18T13:55:50,120   Stored in directory: /tmp/pip-ephem-wheel-cache-b4y77vdl/wheels/99/8c/42/b87d57319d1db7f75ec2127e569aa5bf3dc36a194ca5bf7edc
2023-07-18T13:55:50,145 Successfully built moleculekit
2023-07-18T13:55:50,457 Removed build tracker: '/tmp/pip-build-tracker-2pttmjpq'