2023-07-19T09:14:33,201 Created temporary directory: /tmp/pip-build-tracker-aj1731mt 2023-07-19T09:14:33,202 Initialized build tracking at /tmp/pip-build-tracker-aj1731mt 2023-07-19T09:14:33,203 Created build tracker: /tmp/pip-build-tracker-aj1731mt 2023-07-19T09:14:33,203 Entered build tracker: /tmp/pip-build-tracker-aj1731mt 2023-07-19T09:14:33,203 Created temporary directory: /tmp/pip-wheel-3zsf2p6_ 2023-07-19T09:14:33,207 Created temporary directory: /tmp/pip-ephem-wheel-cache-ih3w4zkm 2023-07-19T09:14:33,229 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-19T09:14:33,232 2 location(s) to search for versions of funid: 2023-07-19T09:14:33,232 * https://pypi.org/simple/funid/ 2023-07-19T09:14:33,232 * https://www.piwheels.org/simple/funid/ 2023-07-19T09:14:33,233 Fetching project page and analyzing links: https://pypi.org/simple/funid/ 2023-07-19T09:14:33,233 Getting page https://pypi.org/simple/funid/ 2023-07-19T09:14:33,235 Found index url https://pypi.org/simple/ 2023-07-19T09:14:33,287 Fetched page https://pypi.org/simple/funid/ as application/vnd.pypi.simple.v1+json 2023-07-19T09:14:33,294 Found link https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.0 2023-07-19T09:14:33,295 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/6a/08/2bccf4d17d6297e5c52bcba4eda5d5a1ed634eeb4c048a6a0492bf26f0e2/FunID-0.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,295 Found link https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.2 2023-07-19T09:14:33,296 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/77/47/e4d4394d3df8130a967d730b209ee08f0563e8c07d358e0938084ea2c238/FunID-0.3.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,296 Found link https://files.pythonhosted.org/packages/17/c7/bcd0e755fa5647dda4672ae9fd88f94d590c796d5312b2839b1e00beea1b/FunID-0.3.2.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.2.1 2023-07-19T09:14:33,297 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/20/65/dd3f11ff95c939d1894a81682d820f36a991bcf8f100b19982da1b3787ba/FunID-0.3.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,297 Found link https://files.pythonhosted.org/packages/48/62/211e51aabf536101577540574d126849837a43fa07e8c7c79ec79378bf30/FunID-0.3.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.0 2023-07-19T09:14:33,298 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/31/96/b453dc34699170a20a00aa02e9a0eeb511d75494b88bef72641a7f4aabe1/FunID-0.3.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,298 Found link https://files.pythonhosted.org/packages/00/60/4a6fee9144f0fd461c9e04e3f27ac9bbe36c2b7e9b04ddb9159a2e83481d/FunID-0.3.3.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.1 2023-07-19T09:14:33,299 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/27/55/5e0509c9b25f2d457da174c47bc4b191e7703d59ce32882ce03496ee35a7/FunID-0.3.4-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,299 Found link https://files.pythonhosted.org/packages/6d/2c/1a624a74aadc70a913197e0a7720007b2f952668ca497fdeeb9737699d8f/FunID-0.3.4.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.4 2023-07-19T09:14:33,300 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/5b/e0/d8b28a15adbb933eea238e2b955d474c3fb6aa73c904d6b372f56f30474c/FunID-0.3.5-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,300 Found link https://files.pythonhosted.org/packages/4e/f7/ff0895811673a7bd1da49a359d093810346659be5ac54140b2fbb5e199fc/FunID-0.3.5.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.5 2023-07-19T09:14:33,301 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/b7/27/c64985b174cbfa662e2109d838292a69d1669ad6a3a36294ee03ce81ef2a/FunID-0.3.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,301 Found link https://files.pythonhosted.org/packages/7c/19/cc41c29a0bc630bdc8a5ff93bb58cacc1ae756280b353b6b78d39c52bc85/FunID-0.3.6.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.6.1 2023-07-19T09:14:33,301 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/1f/44/739693947517bbc2e128df01ee142d72ee3358f7cc7daba4a3759fbf34bd/FunID-0.3.7-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,302 Found link https://files.pythonhosted.org/packages/a2/14/7ae571dd6e4b918e2a85ca1625481c5764c15f2f4ecebb64e738e4863c57/FunID-0.3.7.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.7 2023-07-19T09:14:33,302 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/89/e3/e48669d0fdeafd9b79bcd3b601ed05547df828c6f5a3cd0d733e28289738/FunID-0.3.8-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,302 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/f4/45/d1bc4761848b0f4ece4dc47311a91a7e85668eb49b3bbc86843e4508dbc1/FunID-0.3.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,303 Found link https://files.pythonhosted.org/packages/42/29/96fc938318a3c5b62670cb0efc021fea7f8257e825f9bc62aad02087bde5/FunID-0.3.8.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.8.1 2023-07-19T09:14:33,303 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/f9/05/5a5739948741051441923681ab8f41aeb24b4b67aee087e3911831cd397a/FunID-0.3.8.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,304 Found link https://files.pythonhosted.org/packages/4a/4a/3bf498c2707726c16177fb6d5e4c1fb6b942aa0f857378f22345cee709b9/FunID-0.3.8.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.8.2 2023-07-19T09:14:33,304 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/51/ac/f8561c5c3715309d959188f62cef662154c247362fa548893dda38582f08/FunID-0.3.9-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,305 Found link https://files.pythonhosted.org/packages/de/4c/ef736f335f2da1f2acbe16932bac1a03e2a46f7fd26e01f7d4a5b30d1a35/FunID-0.3.9.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.9 2023-07-19T09:14:33,305 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/26/59/dd98aa71ec91f80ff255b9177e7c3705f2352298dc8bb48bfa492d8304e3/FunID-0.3.10.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,305 Found link https://files.pythonhosted.org/packages/da/ef/a3b426feaf718c30c259c165124120c3192833b4c356a8a10efa909ac4b7/FunID-0.3.10.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.10.1 2023-07-19T09:14:33,306 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/17/b5/c3439f3af84951ffe85ed70190fdc02a33ab0e435a934a02c08f49505642/FunID-0.3.11-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,306 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/82/95/47d34ff9a0cc4a13e411dda8b40535efd54149fd259ef126246e6fd7ecdb/FunID-0.3.11.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,307 Found link https://files.pythonhosted.org/packages/84/c2/3278912b3d3b883be4b40dc072f732f708d5eb844046486762c6f9e7c772/FunID-0.3.11.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.11.0 2023-07-19T09:14:33,307 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/43/8c/a5bf3a512cb66117b0b8a83837a966dc2e3ce2c2bcb8570e5a35d3400392/FunID-0.3.11.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,307 Found link https://files.pythonhosted.org/packages/ba/8a/83e56e593445f58c6b6137886a90beaedabcc59274a95ff56e9d1fd8ecdb/FunID-0.3.11.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.11.1 2023-07-19T09:14:33,308 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/4c/68/28671e34d2c6358178f26a824fd61e89dfea1c3582366a9a5d27cfad6eef/FunID-0.3.12-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,308 Found link https://files.pythonhosted.org/packages/98/5a/615914c19c41ddb727d869f81f69307ee01450ebb57ae2316d7b467cdf28/FunID-0.3.12.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.12 2023-07-19T09:14:33,308 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/bf/6f/97fa36053eecbd72fb635943a6c76131fdc63e6817cb9b88a04e1fa7ac1f/FunID-0.3.12.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,309 Found link https://files.pythonhosted.org/packages/91/c1/dfbea8971785c0ab657008484777594dfce4ae2270f925f4d1b1e763108d/FunID-0.3.12.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.12.1 2023-07-19T09:14:33,309 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/69/06/2da7c46f79901bdf468d6df8c074b836cbae68bd0ffc8e6d8b187b7ecc6a/FunID-0.3.13-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,310 Found link https://files.pythonhosted.org/packages/26/e1/01fd0479b72362053d60ee74705f3560d2199a552e5abf4856dbec7811dc/FunID-0.3.13.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.13 2023-07-19T09:14:33,310 Fetching project page and analyzing links: https://www.piwheels.org/simple/funid/ 2023-07-19T09:14:33,311 Getting page https://www.piwheels.org/simple/funid/ 2023-07-19T09:14:33,312 Found index url https://www.piwheels.org/simple/ 2023-07-19T09:14:33,464 Fetched page https://www.piwheels.org/simple/funid/ as text/html 2023-07-19T09:14:33,469 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.12.1-py3-none-any.whl#sha256=8f79e49afdf8a5b830c592f0a40819950291c7f9812bfc0afc57ec4244e0e14c (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,470 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.12-py3-none-any.whl#sha256=690331574875137d94139ddce24919dd1c94d97492b51b0f26b5d3b88f8c83d7 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,470 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.11.1-py3-none-any.whl#sha256=0b9e179e7311ba0893697757fa065752cf5b0629ba6f3f38e1025e335e74b3a8 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,470 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.11.0-py3-none-any.whl#sha256=6e60d72632ca2cf07c0ec2c903a5e044eef646e76848189b805d20736850ce33 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,470 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.10.1-py3-none-any.whl#sha256=7ac9e1373fc681d838576b55f51c104675d6fc3134a2d545da50145e18d08705 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,471 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.9-py3-none-any.whl#sha256=4431b10bd1c85b826c3ec29a0d6012ea6c189c62b3b9a78ca40cb341e5aba58a (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,471 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.8.2-py3-none-any.whl#sha256=06eb041030a5d98c5317f93863fa0bafdb3bac2e3225487b61109016d3ae8b89 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,471 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.8.1-py3-none-any.whl#sha256=e084fdf424ae421530d153e56c4a7a15849d59762617b101ba672265e1f83ae2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,471 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.7-py3-none-any.whl#sha256=696cfcf7f361ec4e0dd269ac3c0b30051c83fb75dd92ee7b8b0813f1b6c71f6c (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,471 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.6.1-py3-none-any.whl#sha256=9eddeab3cb03eb693bd4e1e231ab1076caa820fd6db88ef6c584b309cf87af4b (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,472 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.5-py3-none-any.whl#sha256=010daca223b2f36ea9811ebd48eb1afa57c9a0ac2f3a3f84f9b86603107db381 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,472 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.4-py3-none-any.whl#sha256=8f1161bfcbdbb5037a33076aa43c07292865101ee07e5370547b462c0e20cb67 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,472 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.1-py3-none-any.whl#sha256=3f87f5ecaa7ed8c6c00a3d76dc520e16293e70f38d878a85136fe28b96dcbbc5 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,472 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.0-py3-none-any.whl#sha256=dbca8d35c471b5a3c78fa7f5310bc475466d4bdc67ffff084e63baaf20a81154 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,472 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2.1-py3-none-any.whl#sha256=273f7078ce3ee94e0c5f6e862a8419c6ea6bd05ea1153174fba3ac5259d65f3a (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-19T09:14:33,473 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2-py3-none-any.whl#sha256=d0714cd7cd6b2c16ae6dc7120ae5ede922e049fab52e6d1a2a24c6e7075360be (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,473 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.0-py3-none-any.whl#sha256=e875a0092c43c61afaa8f12b92c67d0ae13e5a081dc0f494828474f50c67bfd2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-19T09:14:33,473 Skipping link: not a file: https://www.piwheels.org/simple/funid/ 2023-07-19T09:14:33,473 Skipping link: not a file: https://pypi.org/simple/funid/ 2023-07-19T09:14:33,493 Given no hashes to check 1 links for project 'funid': discarding no candidates 2023-07-19T09:14:33,511 Collecting funid==0.3.13 2023-07-19T09:14:33,513 Created temporary directory: /tmp/pip-unpack-tkq9q9iw 2023-07-19T09:14:33,649 Downloading FunID-0.3.13.tar.gz (51.4 MB) 2023-07-19T09:14:45,577 Added funid==0.3.13 from https://files.pythonhosted.org/packages/26/e1/01fd0479b72362053d60ee74705f3560d2199a552e5abf4856dbec7811dc/FunID-0.3.13.tar.gz to build tracker '/tmp/pip-build-tracker-aj1731mt' 2023-07-19T09:14:45,578 Running setup.py (path:/tmp/pip-wheel-3zsf2p6_/funid_c5de8d6c9fc94b1e9709f8073d535ca0/setup.py) egg_info for package funid 2023-07-19T09:14:45,579 Created temporary directory: /tmp/pip-pip-egg-info-0lra3fl2 2023-07-19T09:14:45,579 Preparing metadata (setup.py): started 2023-07-19T09:14:45,580 Running command python setup.py egg_info 2023-07-19T09:14:46,175 {'name': 'FunID', 'version': '0.3.13', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.10', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'psutil', 'PyQt5', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'scipy', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-07-19T09:14:46,176 running egg_info 2023-07-19T09:14:46,177 creating /tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info 2023-07-19T09:14:46,205 writing /tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info/PKG-INFO 2023-07-19T09:14:46,207 writing dependency_links to /tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info/dependency_links.txt 2023-07-19T09:14:46,209 writing entry points to /tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info/entry_points.txt 2023-07-19T09:14:46,211 writing requirements to /tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info/requires.txt 2023-07-19T09:14:46,212 writing top-level names to /tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info/top_level.txt 2023-07-19T09:14:46,213 writing manifest file '/tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info/SOURCES.txt' 2023-07-19T09:14:46,306 reading manifest file '/tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info/SOURCES.txt' 2023-07-19T09:14:46,307 adding license file 'LICENSE' 2023-07-19T09:14:46,311 writing manifest file '/tmp/pip-pip-egg-info-0lra3fl2/FunID.egg-info/SOURCES.txt' 2023-07-19T09:14:46,369 Preparing metadata (setup.py): finished with status 'done' 2023-07-19T09:14:46,374 Source in /tmp/pip-wheel-3zsf2p6_/funid_c5de8d6c9fc94b1e9709f8073d535ca0 has version 0.3.13, which satisfies requirement funid==0.3.13 from https://files.pythonhosted.org/packages/26/e1/01fd0479b72362053d60ee74705f3560d2199a552e5abf4856dbec7811dc/FunID-0.3.13.tar.gz 2023-07-19T09:14:46,375 Removed funid==0.3.13 from https://files.pythonhosted.org/packages/26/e1/01fd0479b72362053d60ee74705f3560d2199a552e5abf4856dbec7811dc/FunID-0.3.13.tar.gz from build tracker '/tmp/pip-build-tracker-aj1731mt' 2023-07-19T09:14:46,382 Created temporary directory: /tmp/pip-unpack-tmg_v9mj 2023-07-19T09:14:46,383 Building wheels for collected packages: funid 2023-07-19T09:14:46,387 Created temporary directory: /tmp/pip-wheel-f0gqvj89 2023-07-19T09:14:46,387 Building wheel for funid (setup.py): started 2023-07-19T09:14:46,388 Destination directory: /tmp/pip-wheel-f0gqvj89 2023-07-19T09:14:46,388 Running command python setup.py bdist_wheel 2023-07-19T09:14:46,812 {'name': 'FunID', 'version': '0.3.13', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.10', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'psutil', 'PyQt5', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'scipy', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-07-19T09:14:47,060 running bdist_wheel 2023-07-19T09:14:47,335 running build 2023-07-19T09:14:47,335 running build_py 2023-07-19T09:14:47,364 creating build 2023-07-19T09:14:47,365 creating build/lib 2023-07-19T09:14:47,366 creating build/lib/funid 2023-07-19T09:14:47,367 copying funid/main.py -> build/lib/funid 2023-07-19T09:14:47,370 copying funid/FunID_GUI.py -> build/lib/funid 2023-07-19T09:14:47,372 copying funid/__init__.py -> build/lib/funid 2023-07-19T09:14:47,375 creating build/lib/funid/src 2023-07-19T09:14:47,376 copying funid/src/reporter.py -> build/lib/funid/src 2023-07-19T09:14:47,380 copying funid/src/command.py -> build/lib/funid/src 2023-07-19T09:14:47,382 copying funid/src/align.py -> build/lib/funid/src 2023-07-19T09:14:47,384 copying funid/src/tool.py -> build/lib/funid/src 2023-07-19T09:14:47,387 copying funid/src/modeltest.py -> build/lib/funid/src 2023-07-19T09:14:47,389 copying funid/src/initialize.py -> build/lib/funid/src 2023-07-19T09:14:47,392 copying funid/src/tree_interpretation.py -> build/lib/funid/src 2023-07-19T09:14:47,395 copying funid/src/save.py -> build/lib/funid/src 2023-07-19T09:14:47,397 copying funid/src/opt_generator.py -> build/lib/funid/src 2023-07-19T09:14:47,399 copying funid/src/manage_input.py -> build/lib/funid/src 2023-07-19T09:14:47,402 copying funid/src/patch.py -> build/lib/funid/src 2023-07-19T09:14:47,404 copying funid/src/ext.py -> build/lib/funid/src 2023-07-19T09:14:47,407 copying funid/src/logics.py -> build/lib/funid/src 2023-07-19T09:14:47,409 copying funid/src/hasher.py -> build/lib/funid/src 2023-07-19T09:14:47,411 copying funid/src/validate_option.py -> build/lib/funid/src 2023-07-19T09:14:47,414 copying funid/src/validation.py -> build/lib/funid/src 2023-07-19T09:14:47,416 copying funid/src/cluster.py -> build/lib/funid/src 2023-07-19T09:14:47,418 copying funid/src/concatenate.py -> build/lib/funid/src 2023-07-19T09:14:47,421 copying funid/src/tree.py -> build/lib/funid/src 2023-07-19T09:14:47,423 copying funid/src/logger.py -> build/lib/funid/src 2023-07-19T09:14:47,424 copying funid/src/__init__.py -> build/lib/funid/src 2023-07-19T09:14:47,426 copying funid/src/tree_interpretation_pipe.py -> build/lib/funid/src 2023-07-19T09:14:47,428 copying funid/src/search.py -> build/lib/funid/src 2023-07-19T09:14:47,431 copying funid/src/trim.py -> build/lib/funid/src 2023-07-19T09:14:47,433 copying funid/src/ncbi.py -> build/lib/funid/src 2023-07-19T09:14:47,435 copying funid/src/dataset.py -> build/lib/funid/src 2023-07-19T09:14:47,438 creating build/lib/funid/data 2023-07-19T09:14:47,439 copying funid/data/__init__.py -> build/lib/funid/data 2023-07-19T09:14:47,441 running egg_info 2023-07-19T09:14:47,502 writing FunID.egg-info/PKG-INFO 2023-07-19T09:14:47,504 writing dependency_links to FunID.egg-info/dependency_links.txt 2023-07-19T09:14:47,506 writing entry points to FunID.egg-info/entry_points.txt 2023-07-19T09:14:47,508 writing requirements to FunID.egg-info/requires.txt 2023-07-19T09:14:47,509 writing top-level names to FunID.egg-info/top_level.txt 2023-07-19T09:14:47,545 reading manifest file 'FunID.egg-info/SOURCES.txt' 2023-07-19T09:14:47,554 adding license file 'LICENSE' 2023-07-19T09:14:47,562 writing manifest file 'FunID.egg-info/SOURCES.txt' 2023-07-19T09:14:47,565 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external' is absent from the `packages` configuration. 2023-07-19T09:14:47,565 !! 2023-07-19T09:14:47,565 ******************************************************************************** 2023-07-19T09:14:47,565 ############################ 2023-07-19T09:14:47,566 # Package would be ignored # 2023-07-19T09:14:47,566 ############################ 2023-07-19T09:14:47,566 Python recognizes 'funid.external' as an importable package[^1], 2023-07-19T09:14:47,566 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,566 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,566 package, please make sure that 'funid.external' is explicitly added 2023-07-19T09:14:47,566 to the `packages` configuration field. 2023-07-19T09:14:47,567 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,567 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,567 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,567 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,567 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,568 If you don't want 'funid.external' to be distributed and are 2023-07-19T09:14:47,568 already explicitly excluding 'funid.external' via 2023-07-19T09:14:47,568 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,568 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,568 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,568 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,569 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,569 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,569 even if it does not contain any `.py` files. 2023-07-19T09:14:47,569 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,569 directory, all directories are treated like packages. 2023-07-19T09:14:47,569 ******************************************************************************** 2023-07-19T09:14:47,570 !! 2023-07-19T09:14:47,570 check.warn(importable) 2023-07-19T09:14:47,570 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows' is absent from the `packages` configuration. 2023-07-19T09:14:47,570 !! 2023-07-19T09:14:47,570 ******************************************************************************** 2023-07-19T09:14:47,571 ############################ 2023-07-19T09:14:47,571 # Package would be ignored # 2023-07-19T09:14:47,571 ############################ 2023-07-19T09:14:47,571 Python recognizes 'funid.external.BLAST_Windows' as an importable package[^1], 2023-07-19T09:14:47,571 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,571 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,571 package, please make sure that 'funid.external.BLAST_Windows' is explicitly added 2023-07-19T09:14:47,572 to the `packages` configuration field. 2023-07-19T09:14:47,572 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,572 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,572 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,572 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,572 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,573 If you don't want 'funid.external.BLAST_Windows' to be distributed and are 2023-07-19T09:14:47,573 already explicitly excluding 'funid.external.BLAST_Windows' via 2023-07-19T09:14:47,573 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,573 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,573 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,573 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,574 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,574 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,574 even if it does not contain any `.py` files. 2023-07-19T09:14:47,574 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,574 directory, all directories are treated like packages. 2023-07-19T09:14:47,574 ******************************************************************************** 2023-07-19T09:14:47,575 !! 2023-07-19T09:14:47,575 check.warn(importable) 2023-07-19T09:14:47,575 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2023-07-19T09:14:47,575 !! 2023-07-19T09:14:47,575 ******************************************************************************** 2023-07-19T09:14:47,575 ############################ 2023-07-19T09:14:47,576 # Package would be ignored # 2023-07-19T09:14:47,576 ############################ 2023-07-19T09:14:47,576 Python recognizes 'funid.external.BLAST_Windows.bin' as an importable package[^1], 2023-07-19T09:14:47,576 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,576 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,576 package, please make sure that 'funid.external.BLAST_Windows.bin' is explicitly added 2023-07-19T09:14:47,576 to the `packages` configuration field. 2023-07-19T09:14:47,577 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,577 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,577 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,577 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,578 If you don't want 'funid.external.BLAST_Windows.bin' to be distributed and are 2023-07-19T09:14:47,578 already explicitly excluding 'funid.external.BLAST_Windows.bin' via 2023-07-19T09:14:47,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,578 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,578 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,578 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,579 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,579 even if it does not contain any `.py` files. 2023-07-19T09:14:47,579 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,579 directory, all directories are treated like packages. 2023-07-19T09:14:47,579 ******************************************************************************** 2023-07-19T09:14:47,580 !! 2023-07-19T09:14:47,580 check.warn(importable) 2023-07-19T09:14:47,580 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2023-07-19T09:14:47,580 !! 2023-07-19T09:14:47,580 ******************************************************************************** 2023-07-19T09:14:47,580 ############################ 2023-07-19T09:14:47,580 # Package would be ignored # 2023-07-19T09:14:47,581 ############################ 2023-07-19T09:14:47,581 Python recognizes 'funid.external.BLAST_Windows.doc' as an importable package[^1], 2023-07-19T09:14:47,581 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,581 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,581 package, please make sure that 'funid.external.BLAST_Windows.doc' is explicitly added 2023-07-19T09:14:47,581 to the `packages` configuration field. 2023-07-19T09:14:47,581 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,582 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,582 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,582 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,582 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,582 If you don't want 'funid.external.BLAST_Windows.doc' to be distributed and are 2023-07-19T09:14:47,582 already explicitly excluding 'funid.external.BLAST_Windows.doc' via 2023-07-19T09:14:47,583 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,583 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,583 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,583 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,583 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,584 even if it does not contain any `.py` files. 2023-07-19T09:14:47,584 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,584 directory, all directories are treated like packages. 2023-07-19T09:14:47,584 ******************************************************************************** 2023-07-19T09:14:47,584 !! 2023-07-19T09:14:47,584 check.warn(importable) 2023-07-19T09:14:47,584 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.FastTree_Windows' is absent from the `packages` configuration. 2023-07-19T09:14:47,585 !! 2023-07-19T09:14:47,585 ******************************************************************************** 2023-07-19T09:14:47,585 ############################ 2023-07-19T09:14:47,585 # Package would be ignored # 2023-07-19T09:14:47,585 ############################ 2023-07-19T09:14:47,585 Python recognizes 'funid.external.FastTree_Windows' as an importable package[^1], 2023-07-19T09:14:47,585 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,586 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,586 package, please make sure that 'funid.external.FastTree_Windows' is explicitly added 2023-07-19T09:14:47,586 to the `packages` configuration field. 2023-07-19T09:14:47,586 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,586 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,586 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,587 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,587 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,587 If you don't want 'funid.external.FastTree_Windows' to be distributed and are 2023-07-19T09:14:47,587 already explicitly excluding 'funid.external.FastTree_Windows' via 2023-07-19T09:14:47,587 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,587 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,587 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,588 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,588 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,588 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,588 even if it does not contain any `.py` files. 2023-07-19T09:14:47,589 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,589 directory, all directories are treated like packages. 2023-07-19T09:14:47,589 ******************************************************************************** 2023-07-19T09:14:47,589 !! 2023-07-19T09:14:47,589 check.warn(importable) 2023-07-19T09:14:47,589 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.RAxML_Windows' is absent from the `packages` configuration. 2023-07-19T09:14:47,590 !! 2023-07-19T09:14:47,590 ******************************************************************************** 2023-07-19T09:14:47,590 ############################ 2023-07-19T09:14:47,590 # Package would be ignored # 2023-07-19T09:14:47,590 ############################ 2023-07-19T09:14:47,590 Python recognizes 'funid.external.RAxML_Windows' as an importable package[^1], 2023-07-19T09:14:47,590 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,591 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,591 package, please make sure that 'funid.external.RAxML_Windows' is explicitly added 2023-07-19T09:14:47,591 to the `packages` configuration field. 2023-07-19T09:14:47,591 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,591 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,591 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,592 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,592 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,592 If you don't want 'funid.external.RAxML_Windows' to be distributed and are 2023-07-19T09:14:47,592 already explicitly excluding 'funid.external.RAxML_Windows' via 2023-07-19T09:14:47,593 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,593 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,593 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,593 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,593 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,594 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,594 even if it does not contain any `.py` files. 2023-07-19T09:14:47,594 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,594 directory, all directories are treated like packages. 2023-07-19T09:14:47,594 ******************************************************************************** 2023-07-19T09:14:47,594 !! 2023-07-19T09:14:47,595 check.warn(importable) 2023-07-19T09:14:47,595 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows' is absent from the `packages` configuration. 2023-07-19T09:14:47,595 !! 2023-07-19T09:14:47,595 ******************************************************************************** 2023-07-19T09:14:47,595 ############################ 2023-07-19T09:14:47,595 # Package would be ignored # 2023-07-19T09:14:47,596 ############################ 2023-07-19T09:14:47,596 Python recognizes 'funid.external.mmseqs_Windows' as an importable package[^1], 2023-07-19T09:14:47,596 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,596 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,596 package, please make sure that 'funid.external.mmseqs_Windows' is explicitly added 2023-07-19T09:14:47,596 to the `packages` configuration field. 2023-07-19T09:14:47,597 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,597 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,597 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,597 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,597 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,598 If you don't want 'funid.external.mmseqs_Windows' to be distributed and are 2023-07-19T09:14:47,598 already explicitly excluding 'funid.external.mmseqs_Windows' via 2023-07-19T09:14:47,598 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,598 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,598 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,598 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,599 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,599 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,599 even if it does not contain any `.py` files. 2023-07-19T09:14:47,599 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,599 directory, all directories are treated like packages. 2023-07-19T09:14:47,599 ******************************************************************************** 2023-07-19T09:14:47,600 !! 2023-07-19T09:14:47,600 check.warn(importable) 2023-07-19T09:14:47,600 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2023-07-19T09:14:47,600 !! 2023-07-19T09:14:47,600 ******************************************************************************** 2023-07-19T09:14:47,600 ############################ 2023-07-19T09:14:47,601 # Package would be ignored # 2023-07-19T09:14:47,601 ############################ 2023-07-19T09:14:47,601 Python recognizes 'funid.external.mmseqs_Windows.bin' as an importable package[^1], 2023-07-19T09:14:47,601 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,601 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,601 package, please make sure that 'funid.external.mmseqs_Windows.bin' is explicitly added 2023-07-19T09:14:47,601 to the `packages` configuration field. 2023-07-19T09:14:47,602 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,602 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,602 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,602 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,602 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,603 If you don't want 'funid.external.mmseqs_Windows.bin' to be distributed and are 2023-07-19T09:14:47,603 already explicitly excluding 'funid.external.mmseqs_Windows.bin' via 2023-07-19T09:14:47,603 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,603 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,603 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,603 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,604 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,604 even if it does not contain any `.py` files. 2023-07-19T09:14:47,604 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,604 directory, all directories are treated like packages. 2023-07-19T09:14:47,604 ******************************************************************************** 2023-07-19T09:14:47,605 !! 2023-07-19T09:14:47,605 check.warn(importable) 2023-07-19T09:14:47,605 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2023-07-19T09:14:47,605 !! 2023-07-19T09:14:47,605 ******************************************************************************** 2023-07-19T09:14:47,605 ############################ 2023-07-19T09:14:47,606 # Package would be ignored # 2023-07-19T09:14:47,606 ############################ 2023-07-19T09:14:47,606 Python recognizes 'funid.external.mmseqs_Windows.examples' as an importable package[^1], 2023-07-19T09:14:47,606 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,606 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,606 package, please make sure that 'funid.external.mmseqs_Windows.examples' is explicitly added 2023-07-19T09:14:47,606 to the `packages` configuration field. 2023-07-19T09:14:47,607 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,607 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,607 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,607 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,608 If you don't want 'funid.external.mmseqs_Windows.examples' to be distributed and are 2023-07-19T09:14:47,608 already explicitly excluding 'funid.external.mmseqs_Windows.examples' via 2023-07-19T09:14:47,608 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,608 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,608 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,609 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,609 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,609 even if it does not contain any `.py` files. 2023-07-19T09:14:47,609 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,609 directory, all directories are treated like packages. 2023-07-19T09:14:47,610 ******************************************************************************** 2023-07-19T09:14:47,610 !! 2023-07-19T09:14:47,610 check.warn(importable) 2023-07-19T09:14:47,610 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2023-07-19T09:14:47,610 !! 2023-07-19T09:14:47,610 ******************************************************************************** 2023-07-19T09:14:47,611 ############################ 2023-07-19T09:14:47,611 # Package would be ignored # 2023-07-19T09:14:47,611 ############################ 2023-07-19T09:14:47,611 Python recognizes 'funid.external.mmseqs_Windows.matrices' as an importable package[^1], 2023-07-19T09:14:47,611 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,611 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,611 package, please make sure that 'funid.external.mmseqs_Windows.matrices' is explicitly added 2023-07-19T09:14:47,612 to the `packages` configuration field. 2023-07-19T09:14:47,612 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,612 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,612 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,612 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,613 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,613 If you don't want 'funid.external.mmseqs_Windows.matrices' to be distributed and are 2023-07-19T09:14:47,613 already explicitly excluding 'funid.external.mmseqs_Windows.matrices' via 2023-07-19T09:14:47,613 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,613 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,613 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,613 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,614 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,614 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,614 even if it does not contain any `.py` files. 2023-07-19T09:14:47,614 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,615 directory, all directories are treated like packages. 2023-07-19T09:14:47,615 ******************************************************************************** 2023-07-19T09:14:47,615 !! 2023-07-19T09:14:47,615 check.warn(importable) 2023-07-19T09:14:47,615 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2023-07-19T09:14:47,615 !! 2023-07-19T09:14:47,615 ******************************************************************************** 2023-07-19T09:14:47,616 ############################ 2023-07-19T09:14:47,616 # Package would be ignored # 2023-07-19T09:14:47,616 ############################ 2023-07-19T09:14:47,616 Python recognizes 'funid.external.mmseqs_Windows.util' as an importable package[^1], 2023-07-19T09:14:47,616 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,616 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,616 package, please make sure that 'funid.external.mmseqs_Windows.util' is explicitly added 2023-07-19T09:14:47,617 to the `packages` configuration field. 2023-07-19T09:14:47,617 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,617 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,617 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,618 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,618 If you don't want 'funid.external.mmseqs_Windows.util' to be distributed and are 2023-07-19T09:14:47,618 already explicitly excluding 'funid.external.mmseqs_Windows.util' via 2023-07-19T09:14:47,618 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,618 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,618 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,618 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,619 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,619 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,619 even if it does not contain any `.py` files. 2023-07-19T09:14:47,619 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,619 directory, all directories are treated like packages. 2023-07-19T09:14:47,620 ******************************************************************************** 2023-07-19T09:14:47,620 !! 2023-07-19T09:14:47,620 check.warn(importable) 2023-07-19T09:14:47,620 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium' is absent from the `packages` configuration. 2023-07-19T09:14:47,620 !! 2023-07-19T09:14:47,620 ******************************************************************************** 2023-07-19T09:14:47,620 ############################ 2023-07-19T09:14:47,621 # Package would be ignored # 2023-07-19T09:14:47,621 ############################ 2023-07-19T09:14:47,621 Python recognizes 'funid.test_dataset.penicillium' as an importable package[^1], 2023-07-19T09:14:47,621 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,621 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,621 package, please make sure that 'funid.test_dataset.penicillium' is explicitly added 2023-07-19T09:14:47,621 to the `packages` configuration field. 2023-07-19T09:14:47,622 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,622 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,622 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,622 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,623 If you don't want 'funid.test_dataset.penicillium' to be distributed and are 2023-07-19T09:14:47,623 already explicitly excluding 'funid.test_dataset.penicillium' via 2023-07-19T09:14:47,623 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,623 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,623 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,623 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,624 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,624 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,624 even if it does not contain any `.py` files. 2023-07-19T09:14:47,624 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,624 directory, all directories are treated like packages. 2023-07-19T09:14:47,624 ******************************************************************************** 2023-07-19T09:14:47,625 !! 2023-07-19T09:14:47,625 check.warn(importable) 2023-07-19T09:14:47,625 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2023-07-19T09:14:47,625 !! 2023-07-19T09:14:47,625 ******************************************************************************** 2023-07-19T09:14:47,625 ############################ 2023-07-19T09:14:47,626 # Package would be ignored # 2023-07-19T09:14:47,626 ############################ 2023-07-19T09:14:47,626 Python recognizes 'funid.test_dataset.penicillium.DB' as an importable package[^1], 2023-07-19T09:14:47,626 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,626 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,626 package, please make sure that 'funid.test_dataset.penicillium.DB' is explicitly added 2023-07-19T09:14:47,626 to the `packages` configuration field. 2023-07-19T09:14:47,627 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,627 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,627 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,627 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,628 If you don't want 'funid.test_dataset.penicillium.DB' to be distributed and are 2023-07-19T09:14:47,628 already explicitly excluding 'funid.test_dataset.penicillium.DB' via 2023-07-19T09:14:47,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,628 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,628 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,628 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,629 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,629 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,629 even if it does not contain any `.py` files. 2023-07-19T09:14:47,629 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,629 directory, all directories are treated like packages. 2023-07-19T09:14:47,629 ******************************************************************************** 2023-07-19T09:14:47,630 !! 2023-07-19T09:14:47,630 check.warn(importable) 2023-07-19T09:14:47,630 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2023-07-19T09:14:47,630 !! 2023-07-19T09:14:47,630 ******************************************************************************** 2023-07-19T09:14:47,630 ############################ 2023-07-19T09:14:47,631 # Package would be ignored # 2023-07-19T09:14:47,631 ############################ 2023-07-19T09:14:47,631 Python recognizes 'funid.test_dataset.penicillium.Query' as an importable package[^1], 2023-07-19T09:14:47,631 but it is absent from setuptools' `packages` configuration. 2023-07-19T09:14:47,631 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-19T09:14:47,631 package, please make sure that 'funid.test_dataset.penicillium.Query' is explicitly added 2023-07-19T09:14:47,631 to the `packages` configuration field. 2023-07-19T09:14:47,632 Alternatively, you can also rely on setuptools' discovery methods 2023-07-19T09:14:47,632 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-19T09:14:47,632 instead of `find_packages(...)`/`find:`). 2023-07-19T09:14:47,632 You can read more about "package discovery" on setuptools documentation page: 2023-07-19T09:14:47,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-19T09:14:47,633 If you don't want 'funid.test_dataset.penicillium.Query' to be distributed and are 2023-07-19T09:14:47,633 already explicitly excluding 'funid.test_dataset.penicillium.Query' via 2023-07-19T09:14:47,633 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-19T09:14:47,633 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-19T09:14:47,633 combination with a more fine grained `package-data` configuration. 2023-07-19T09:14:47,633 You can read more about "package data files" on setuptools documentation page: 2023-07-19T09:14:47,634 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-19T09:14:47,634 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-19T09:14:47,634 even if it does not contain any `.py` files. 2023-07-19T09:14:47,634 On the other hand, currently there is no concept of package data 2023-07-19T09:14:47,634 directory, all directories are treated like packages. 2023-07-19T09:14:47,634 ******************************************************************************** 2023-07-19T09:14:47,635 !! 2023-07-19T09:14:47,635 check.warn(importable) 2023-07-19T09:14:47,635 creating build/lib/funid/external 2023-07-19T09:14:47,635 copying funid/external/MAFFT_LICENSE -> build/lib/funid/external 2023-07-19T09:14:47,635 copying funid/external/MAFFT_Windows.zip -> build/lib/funid/external 2023-07-19T09:14:48,002 copying funid/external/__init__.py -> build/lib/funid/external 2023-07-19T09:14:48,004 creating build/lib/funid/external/BLAST_Windows 2023-07-19T09:14:48,006 copying funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funid/external/BLAST_Windows 2023-07-19T09:14:48,010 creating build/lib/funid/external/BLAST_Windows/bin 2023-07-19T09:14:48,011 copying funid/external/BLAST_Windows/bin/blastn.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-07-19T09:14:48,260 copying funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funid/external/BLAST_Windows/bin 2023-07-19T09:14:48,263 copying funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funid/external/BLAST_Windows/bin 2023-07-19T09:14:48,266 copying funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-07-19T09:14:48,270 copying funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-07-19T09:14:48,441 copying funid/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funid/external/BLAST_Windows/bin 2023-07-19T09:14:48,446 copying funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-07-19T09:14:48,449 creating build/lib/funid/external/BLAST_Windows/doc 2023-07-19T09:14:48,450 copying funid/external/BLAST_Windows/doc/README.txt -> build/lib/funid/external/BLAST_Windows/doc 2023-07-19T09:14:48,452 creating build/lib/funid/external/FastTree_Windows 2023-07-19T09:14:48,453 copying funid/external/FastTree_Windows/FastTree.exe -> build/lib/funid/external/FastTree_Windows 2023-07-19T09:14:48,462 creating build/lib/funid/external/Gblocks_Windows_0.91b 2023-07-19T09:14:48,463 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-19T09:14:48,464 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-19T09:14:48,471 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-19T09:14:48,473 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-19T09:14:48,476 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-19T09:14:48,477 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-19T09:14:48,481 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:48,482 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:48,486 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:48,489 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:48,491 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:48,494 creating build/lib/funid/external/RAxML_Windows 2023-07-19T09:14:48,496 copying funid/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funid/external/RAxML_Windows 2023-07-19T09:14:48,499 copying funid/external/RAxML_Windows/README -> build/lib/funid/external/RAxML_Windows 2023-07-19T09:14:48,502 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-07-19T09:14:48,536 creating build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:48,538 copying funid/external/iqtree-2.1.3-Windows/example.cf -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:48,573 copying funid/external/iqtree-2.1.3-Windows/example.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:48,576 copying funid/external/iqtree-2.1.3-Windows/example.phy -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:48,579 copying funid/external/iqtree-2.1.3-Windows/models.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:48,583 creating build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-19T09:14:48,585 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-19T09:14:48,726 copying funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-19T09:14:48,744 creating build/lib/funid/external/mmseqs_Windows 2023-07-19T09:14:48,745 copying funid/external/mmseqs_Windows/LICENSE.md -> build/lib/funid/external/mmseqs_Windows 2023-07-19T09:14:48,749 copying funid/external/mmseqs_Windows/README.md -> build/lib/funid/external/mmseqs_Windows 2023-07-19T09:14:48,751 copying funid/external/mmseqs_Windows/mmseqs.bat -> build/lib/funid/external/mmseqs_Windows 2023-07-19T09:14:48,753 creating build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:48,754 copying funid/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:48,769 copying funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:48,773 copying funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:48,777 copying funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:48,782 copying funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:48,819 copying funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:48,878 copying funid/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:48,883 copying funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:49,068 creating build/lib/funid/external/mmseqs_Windows/examples 2023-07-19T09:14:49,069 copying funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funid/external/mmseqs_Windows/examples 2023-07-19T09:14:49,076 creating build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,077 copying funid/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,079 copying funid/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,081 copying funid/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,083 copying funid/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,085 copying funid/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,087 copying funid/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,092 copying funid/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,094 copying funid/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,096 copying funid/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,098 copying funid/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,100 copying funid/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,102 copying funid/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,104 copying funid/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,106 copying funid/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,108 copying funid/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,110 copying funid/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,112 copying funid/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,114 copying funid/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,116 copying funid/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,118 copying funid/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,120 copying funid/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,122 copying funid/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,124 copying funid/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,127 copying funid/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,129 copying funid/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,131 copying funid/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,134 copying funid/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,136 copying funid/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,139 copying funid/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,141 copying funid/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,144 copying funid/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,146 copying funid/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,148 copying funid/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,150 copying funid/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,152 copying funid/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,155 copying funid/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,157 copying funid/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,159 copying funid/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,162 copying funid/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,164 copying funid/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,166 copying funid/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,168 copying funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:49,170 creating build/lib/funid/external/mmseqs_Windows/util 2023-07-19T09:14:49,171 copying funid/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funid/external/mmseqs_Windows/util 2023-07-19T09:14:49,173 creating build/lib/funid/external/trimal.v1.2rev59 2023-07-19T09:14:49,174 creating build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:49,175 copying funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:49,177 copying funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:49,179 copying funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:49,182 copying funid/external/trimal.v1.2rev59/trimAl/README -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:49,184 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-19T09:14:49,185 copying funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-19T09:14:49,207 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,208 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,211 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,214 copying funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,216 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,219 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,221 copying funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,225 copying funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,227 copying funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,230 copying funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,233 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,235 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,237 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,240 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,242 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,245 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,247 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,249 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,251 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,254 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,256 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,258 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,261 copying funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:49,263 copying funid/data/Option_manager.xlsx -> build/lib/funid/data 2023-07-19T09:14:49,265 copying funid/data/genus_line.txt -> build/lib/funid/data 2023-07-19T09:14:49,268 creating build/lib/funid/test_dataset 2023-07-19T09:14:49,269 creating build/lib/funid/test_dataset/penicillium 2023-07-19T09:14:49,270 copying funid/test_dataset/penicillium/Options.config -> build/lib/funid/test_dataset/penicillium 2023-07-19T09:14:49,272 copying funid/test_dataset/penicillium/preset.yaml -> build/lib/funid/test_dataset/penicillium 2023-07-19T09:14:49,274 creating build/lib/funid/test_dataset/penicillium/DB 2023-07-19T09:14:49,275 copying funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funid/test_dataset/penicillium/DB 2023-07-19T09:14:49,282 creating build/lib/funid/test_dataset/penicillium/Query 2023-07-19T09:14:49,283 copying funid/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funid/test_dataset/penicillium/Query 2023-07-19T09:14:49,287 creating build/lib/funid/preset 2023-07-19T09:14:49,287 copying funid/preset/accurate.yaml -> build/lib/funid/preset 2023-07-19T09:14:49,290 copying funid/preset/fast.yaml -> build/lib/funid/preset 2023-07-19T09:14:49,323 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-19T09:14:49,323 !! 2023-07-19T09:14:49,323 ******************************************************************************** 2023-07-19T09:14:49,323 Please avoid running ``setup.py`` directly. 2023-07-19T09:14:49,323 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-19T09:14:49,324 other standards-based tools. 2023-07-19T09:14:49,324 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-19T09:14:49,324 ******************************************************************************** 2023-07-19T09:14:49,324 !! 2023-07-19T09:14:49,324 self.initialize_options() 2023-07-19T09:14:49,350 installing to build/bdist.linux-armv7l/wheel 2023-07-19T09:14:49,351 running install 2023-07-19T09:14:49,375 running install_lib 2023-07-19T09:14:49,402 creating build/bdist.linux-armv7l 2023-07-19T09:14:49,402 creating build/bdist.linux-armv7l/wheel 2023-07-19T09:14:49,404 creating build/bdist.linux-armv7l/wheel/funid 2023-07-19T09:14:49,406 creating build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,406 copying build/lib/funid/src/reporter.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,409 copying build/lib/funid/src/command.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,411 copying build/lib/funid/src/align.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,413 copying build/lib/funid/src/tool.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,415 copying build/lib/funid/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,418 copying build/lib/funid/src/initialize.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,420 copying build/lib/funid/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,423 copying build/lib/funid/src/save.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,425 copying build/lib/funid/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,426 copying build/lib/funid/src/manage_input.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,429 copying build/lib/funid/src/patch.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,431 copying build/lib/funid/src/ext.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,433 copying build/lib/funid/src/logics.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,435 copying build/lib/funid/src/hasher.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,436 copying build/lib/funid/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,439 copying build/lib/funid/src/validation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,441 copying build/lib/funid/src/cluster.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,443 copying build/lib/funid/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,446 copying build/lib/funid/src/tree.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,448 copying build/lib/funid/src/logger.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,449 copying build/lib/funid/src/__init__.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,450 copying build/lib/funid/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,453 copying build/lib/funid/src/search.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,455 copying build/lib/funid/src/trim.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,457 copying build/lib/funid/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,459 copying build/lib/funid/src/dataset.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-19T09:14:49,462 copying build/lib/funid/main.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-19T09:14:49,464 creating build/bdist.linux-armv7l/wheel/funid/data 2023-07-19T09:14:49,465 copying build/lib/funid/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-19T09:14:49,468 copying build/lib/funid/data/__init__.py -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-19T09:14:49,469 copying build/lib/funid/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-19T09:14:49,472 creating build/bdist.linux-armv7l/wheel/funid/test_dataset 2023-07-19T09:14:49,474 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-19T09:14:49,475 copying build/lib/funid/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-19T09:14:49,476 copying build/lib/funid/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-19T09:14:49,479 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-07-19T09:14:49,479 copying build/lib/funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-07-19T09:14:49,488 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-07-19T09:14:49,489 copying build/lib/funid/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-07-19T09:14:49,492 copying build/lib/funid/FunID_GUI.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-19T09:14:49,495 creating build/bdist.linux-armv7l/wheel/funid/preset 2023-07-19T09:14:49,496 copying build/lib/funid/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-07-19T09:14:49,498 copying build/lib/funid/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-07-19T09:14:49,499 copying build/lib/funid/__init__.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-19T09:14:49,501 creating build/bdist.linux-armv7l/wheel/funid/external 2023-07-19T09:14:49,502 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b 2023-07-19T09:14:49,504 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-19T09:14:49,505 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-19T09:14:49,506 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-19T09:14:49,510 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:49,511 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:49,514 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:49,516 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:49,519 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-19T09:14:49,522 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-19T09:14:49,524 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-19T09:14:49,531 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-19T09:14:49,533 creating build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-19T09:14:49,534 copying build/lib/funid/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-19T09:14:49,536 copying build/lib/funid/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-19T09:14:49,539 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-19T09:14:49,574 copying build/lib/funid/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-19T09:14:49,959 creating build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-07-19T09:14:49,960 copying build/lib/funid/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-07-19T09:14:49,968 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-07-19T09:14:49,969 copying build/lib/funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-07-19T09:14:49,972 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-07-19T09:14:49,974 copying build/lib/funid/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-07-19T09:14:49,976 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-19T09:14:49,977 copying build/lib/funid/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-19T09:14:49,982 copying build/lib/funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-19T09:14:49,985 copying build/lib/funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-19T09:14:50,175 copying build/lib/funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-19T09:14:50,178 copying build/lib/funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-19T09:14:50,180 copying build/lib/funid/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-19T09:14:50,437 copying build/lib/funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-19T09:14:50,443 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:50,444 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.phy -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:50,447 copying build/lib/funid/external/iqtree-2.1.3-Windows/models.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:50,451 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:50,453 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-19T09:14:50,454 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-19T09:14:50,473 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-19T09:14:50,613 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.cf -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-19T09:14:50,647 copying build/lib/funid/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-19T09:14:50,649 copying build/lib/funid/external/__init__.py -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-19T09:14:50,651 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59 2023-07-19T09:14:50,653 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:50,654 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/README -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:50,656 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:50,658 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:50,661 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,662 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,666 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,668 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,670 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,672 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,674 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,677 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,679 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,681 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,683 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,685 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,687 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,688 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,691 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,693 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,695 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,697 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,700 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,702 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,704 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,706 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,708 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-19T09:14:50,710 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-19T09:14:50,711 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-19T09:14:50,722 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-19T09:14:50,724 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-19T09:14:50,726 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-07-19T09:14:50,727 copying build/lib/funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-07-19T09:14:50,734 copying build/lib/funid/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-19T09:14:50,736 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,737 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,739 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,740 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,742 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,743 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,745 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,747 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,748 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,750 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,752 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,753 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,755 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,756 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,758 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,760 copying build/lib/funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,761 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,763 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,765 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,766 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,768 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,770 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,772 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,774 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,776 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,778 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,780 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,782 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,784 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,786 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,788 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,790 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,792 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,794 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,796 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,798 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,800 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,802 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,804 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,806 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,808 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,809 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,811 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-19T09:14:50,813 copying build/lib/funid/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-19T09:14:50,816 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-07-19T09:14:50,816 copying build/lib/funid/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-07-19T09:14:50,818 copying build/lib/funid/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-19T09:14:50,821 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:50,822 copying build/lib/funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:51,028 copying build/lib/funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:51,034 copying build/lib/funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:51,038 copying build/lib/funid/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:51,049 copying build/lib/funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:51,083 copying build/lib/funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:51,148 copying build/lib/funid/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:51,152 copying build/lib/funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-19T09:14:51,156 running install_egg_info 2023-07-19T09:14:51,187 Copying FunID.egg-info to build/bdist.linux-armv7l/wheel/FunID-0.3.13-py3.9.egg-info 2023-07-19T09:14:51,200 running install_scripts 2023-07-19T09:14:51,221 creating build/bdist.linux-armv7l/wheel/FunID-0.3.13.dist-info/WHEEL 2023-07-19T09:14:51,224 creating '/tmp/pip-wheel-f0gqvj89/FunID-0.3.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-19T09:14:51,228 adding 'funid/FunID_GUI.py' 2023-07-19T09:14:51,230 adding 'funid/__init__.py' 2023-07-19T09:14:51,232 adding 'funid/main.py' 2023-07-19T09:14:51,236 adding 'funid/data/Option_manager.xlsx' 2023-07-19T09:14:51,237 adding 'funid/data/__init__.py' 2023-07-19T09:14:51,245 adding 'funid/data/genus_line.txt' 2023-07-19T09:14:51,252 adding 'funid/external/MAFFT_LICENSE' 2023-07-19T09:14:54,316 adding 'funid/external/MAFFT_Windows.zip' 2023-07-19T09:14:54,484 adding 'funid/external/__init__.py' 2023-07-19T09:14:54,493 adding 'funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2023-07-19T09:14:57,473 adding 'funid/external/BLAST_Windows/bin/blastn.exe' 2023-07-19T09:14:57,581 adding 'funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2023-07-19T09:14:57,582 adding 'funid/external/BLAST_Windows/bin/get_species_taxids.sh' 2023-07-19T09:14:57,586 adding 'funid/external/BLAST_Windows/bin/legacy_blast.pl' 2023-07-19T09:14:59,654 adding 'funid/external/BLAST_Windows/bin/makeblastdb.exe' 2023-07-19T09:14:59,754 adding 'funid/external/BLAST_Windows/bin/nghttp2.dll' 2023-07-19T09:14:59,758 adding 'funid/external/BLAST_Windows/bin/update_blastdb.pl' 2023-07-19T09:14:59,760 adding 'funid/external/BLAST_Windows/doc/README.txt' 2023-07-19T09:14:59,817 adding 'funid/external/FastTree_Windows/FastTree.exe' 2023-07-19T09:14:59,858 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2023-07-19T09:14:59,861 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2023-07-19T09:14:59,862 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2023-07-19T09:14:59,868 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2023-07-19T09:14:59,870 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2023-07-19T09:14:59,872 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2023-07-19T09:14:59,874 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2023-07-19T09:14:59,876 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2023-07-19T09:14:59,883 adding 'funid/external/RAxML_Windows/GPL-3.0.txt' 2023-07-19T09:14:59,885 adding 'funid/external/RAxML_Windows/README' 2023-07-19T09:15:00,181 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2023-07-19T09:15:00,273 adding 'funid/external/iqtree-2.1.3-Windows/example.cf' 2023-07-19T09:15:00,289 adding 'funid/external/iqtree-2.1.3-Windows/example.nex' 2023-07-19T09:15:00,301 adding 'funid/external/iqtree-2.1.3-Windows/example.phy' 2023-07-19T09:15:00,331 adding 'funid/external/iqtree-2.1.3-Windows/models.nex' 2023-07-19T09:15:02,063 adding 'funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe' 2023-07-19T09:15:02,315 adding 'funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll' 2023-07-19T09:15:02,329 adding 'funid/external/mmseqs_Windows/LICENSE.md' 2023-07-19T09:15:02,332 adding 'funid/external/mmseqs_Windows/README.md' 2023-07-19T09:15:02,333 adding 'funid/external/mmseqs_Windows/mmseqs.bat' 2023-07-19T09:15:02,468 adding 'funid/external/mmseqs_Windows/bin/busybox.exe' 2023-07-19T09:15:02,483 adding 'funid/external/mmseqs_Windows/bin/cygbz2-1.dll' 2023-07-19T09:15:02,496 adding 'funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2023-07-19T09:15:02,539 adding 'funid/external/mmseqs_Windows/bin/cyggomp-1.dll' 2023-07-19T09:15:02,803 adding 'funid/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2023-07-19T09:15:03,406 adding 'funid/external/mmseqs_Windows/bin/cygwin1.dll' 2023-07-19T09:15:03,444 adding 'funid/external/mmseqs_Windows/bin/cygz.dll' 2023-07-19T09:15:06,760 adding 'funid/external/mmseqs_Windows/bin/mmseqs.exe' 2023-07-19T09:15:06,883 adding 'funid/external/mmseqs_Windows/examples/QUERY.fasta' 2023-07-19T09:15:06,887 adding 'funid/external/mmseqs_Windows/matrices/PAM10.out' 2023-07-19T09:15:06,889 adding 'funid/external/mmseqs_Windows/matrices/PAM100.out' 2023-07-19T09:15:06,890 adding 'funid/external/mmseqs_Windows/matrices/PAM110.out' 2023-07-19T09:15:06,891 adding 'funid/external/mmseqs_Windows/matrices/PAM120.out' 2023-07-19T09:15:06,893 adding 'funid/external/mmseqs_Windows/matrices/PAM130.out' 2023-07-19T09:15:06,894 adding 'funid/external/mmseqs_Windows/matrices/PAM140.out' 2023-07-19T09:15:06,896 adding 'funid/external/mmseqs_Windows/matrices/PAM150.out' 2023-07-19T09:15:06,897 adding 'funid/external/mmseqs_Windows/matrices/PAM160.out' 2023-07-19T09:15:06,898 adding 'funid/external/mmseqs_Windows/matrices/PAM170.out' 2023-07-19T09:15:06,900 adding 'funid/external/mmseqs_Windows/matrices/PAM180.out' 2023-07-19T09:15:06,901 adding 'funid/external/mmseqs_Windows/matrices/PAM190.out' 2023-07-19T09:15:06,902 adding 'funid/external/mmseqs_Windows/matrices/PAM20.out' 2023-07-19T09:15:06,904 adding 'funid/external/mmseqs_Windows/matrices/PAM30.out' 2023-07-19T09:15:06,905 adding 'funid/external/mmseqs_Windows/matrices/PAM40.out' 2023-07-19T09:15:06,906 adding 'funid/external/mmseqs_Windows/matrices/PAM50.out' 2023-07-19T09:15:06,908 adding 'funid/external/mmseqs_Windows/matrices/PAM60.out' 2023-07-19T09:15:06,909 adding 'funid/external/mmseqs_Windows/matrices/PAM70.out' 2023-07-19T09:15:06,910 adding 'funid/external/mmseqs_Windows/matrices/PAM80.out' 2023-07-19T09:15:06,912 adding 'funid/external/mmseqs_Windows/matrices/PAM90.out' 2023-07-19T09:15:06,913 adding 'funid/external/mmseqs_Windows/matrices/VTML10.out' 2023-07-19T09:15:06,915 adding 'funid/external/mmseqs_Windows/matrices/VTML120.out' 2023-07-19T09:15:06,916 adding 'funid/external/mmseqs_Windows/matrices/VTML160.out' 2023-07-19T09:15:06,917 adding 'funid/external/mmseqs_Windows/matrices/VTML20.out' 2023-07-19T09:15:06,919 adding 'funid/external/mmseqs_Windows/matrices/VTML40.out' 2023-07-19T09:15:06,920 adding 'funid/external/mmseqs_Windows/matrices/VTML80.out' 2023-07-19T09:15:06,922 adding 'funid/external/mmseqs_Windows/matrices/blosum100.out' 2023-07-19T09:15:06,923 adding 'funid/external/mmseqs_Windows/matrices/blosum30.out' 2023-07-19T09:15:06,925 adding 'funid/external/mmseqs_Windows/matrices/blosum35.out' 2023-07-19T09:15:06,927 adding 'funid/external/mmseqs_Windows/matrices/blosum40.out' 2023-07-19T09:15:06,928 adding 'funid/external/mmseqs_Windows/matrices/blosum45.out' 2023-07-19T09:15:06,930 adding 'funid/external/mmseqs_Windows/matrices/blosum50.out' 2023-07-19T09:15:06,931 adding 'funid/external/mmseqs_Windows/matrices/blosum55.out' 2023-07-19T09:15:06,933 adding 'funid/external/mmseqs_Windows/matrices/blosum60.out' 2023-07-19T09:15:06,934 adding 'funid/external/mmseqs_Windows/matrices/blosum62.out' 2023-07-19T09:15:06,936 adding 'funid/external/mmseqs_Windows/matrices/blosum65.out' 2023-07-19T09:15:06,937 adding 'funid/external/mmseqs_Windows/matrices/blosum70.out' 2023-07-19T09:15:06,939 adding 'funid/external/mmseqs_Windows/matrices/blosum75.out' 2023-07-19T09:15:06,941 adding 'funid/external/mmseqs_Windows/matrices/blosum80.out' 2023-07-19T09:15:06,942 adding 'funid/external/mmseqs_Windows/matrices/blosum85.out' 2023-07-19T09:15:06,944 adding 'funid/external/mmseqs_Windows/matrices/blosum90.out' 2023-07-19T09:15:06,945 adding 'funid/external/mmseqs_Windows/matrices/blosum95.out' 2023-07-19T09:15:06,946 adding 'funid/external/mmseqs_Windows/matrices/nucleotide.out' 2023-07-19T09:15:06,948 adding 'funid/external/mmseqs_Windows/util/bash-completion.sh' 2023-07-19T09:15:06,950 adding 'funid/external/trimal.v1.2rev59/trimAl/AUTHORS' 2023-07-19T09:15:06,952 adding 'funid/external/trimal.v1.2rev59/trimAl/CHANGELOG' 2023-07-19T09:15:06,958 adding 'funid/external/trimal.v1.2rev59/trimAl/LICENSE' 2023-07-19T09:15:06,959 adding 'funid/external/trimal.v1.2rev59/trimAl/README' 2023-07-19T09:15:07,051 adding 'funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe' 2023-07-19T09:15:07,063 adding 'funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp' 2023-07-19T09:15:07,066 adding 'funid/external/trimal.v1.2rev59/trimAl/source/alignment.h' 2023-07-19T09:15:07,067 adding 'funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp' 2023-07-19T09:15:07,069 adding 'funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp' 2023-07-19T09:15:07,071 adding 'funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h' 2023-07-19T09:15:07,075 adding 'funid/external/trimal.v1.2rev59/trimAl/source/main.cpp' 2023-07-19T09:15:07,077 adding 'funid/external/trimal.v1.2rev59/trimAl/source/makefile' 2023-07-19T09:15:07,079 adding 'funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp' 2023-07-19T09:15:07,084 adding 'funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp' 2023-07-19T09:15:07,086 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp' 2023-07-19T09:15:07,087 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h' 2023-07-19T09:15:07,090 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp' 2023-07-19T09:15:07,091 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h' 2023-07-19T09:15:07,094 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp' 2023-07-19T09:15:07,096 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h' 2023-07-19T09:15:07,097 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp' 2023-07-19T09:15:07,099 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h' 2023-07-19T09:15:07,101 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp' 2023-07-19T09:15:07,103 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h' 2023-07-19T09:15:07,104 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp' 2023-07-19T09:15:07,106 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.h' 2023-07-19T09:15:07,107 adding 'funid/external/trimal.v1.2rev59/trimAl/source/values.h' 2023-07-19T09:15:07,109 adding 'funid/preset/accurate.yaml' 2023-07-19T09:15:07,110 adding 'funid/preset/fast.yaml' 2023-07-19T09:15:07,112 adding 'funid/src/__init__.py' 2023-07-19T09:15:07,114 adding 'funid/src/align.py' 2023-07-19T09:15:07,116 adding 'funid/src/cluster.py' 2023-07-19T09:15:07,118 adding 'funid/src/command.py' 2023-07-19T09:15:07,120 adding 'funid/src/concatenate.py' 2023-07-19T09:15:07,123 adding 'funid/src/dataset.py' 2023-07-19T09:15:07,125 adding 'funid/src/ext.py' 2023-07-19T09:15:07,126 adding 'funid/src/hasher.py' 2023-07-19T09:15:07,129 adding 'funid/src/initialize.py' 2023-07-19T09:15:07,130 adding 'funid/src/logger.py' 2023-07-19T09:15:07,132 adding 'funid/src/logics.py' 2023-07-19T09:15:07,135 adding 'funid/src/manage_input.py' 2023-07-19T09:15:07,137 adding 'funid/src/modeltest.py' 2023-07-19T09:15:07,139 adding 'funid/src/ncbi.py' 2023-07-19T09:15:07,141 adding 'funid/src/opt_generator.py' 2023-07-19T09:15:07,143 adding 'funid/src/patch.py' 2023-07-19T09:15:07,147 adding 'funid/src/reporter.py' 2023-07-19T09:15:07,149 adding 'funid/src/save.py' 2023-07-19T09:15:07,151 adding 'funid/src/search.py' 2023-07-19T09:15:07,152 adding 'funid/src/tool.py' 2023-07-19T09:15:07,154 adding 'funid/src/tree.py' 2023-07-19T09:15:07,159 adding 'funid/src/tree_interpretation.py' 2023-07-19T09:15:07,162 adding 'funid/src/tree_interpretation_pipe.py' 2023-07-19T09:15:07,163 adding 'funid/src/trim.py' 2023-07-19T09:15:07,169 adding 'funid/src/validate_option.py' 2023-07-19T09:15:07,170 adding 'funid/src/validation.py' 2023-07-19T09:15:07,172 adding 'funid/test_dataset/penicillium/Options.config' 2023-07-19T09:15:07,174 adding 'funid/test_dataset/penicillium/preset.yaml' 2023-07-19T09:15:07,214 adding 'funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2023-07-19T09:15:07,260 adding 'funid/test_dataset/penicillium/Query/Query.xlsx' 2023-07-19T09:15:07,348 adding 'FunID-0.3.13.dist-info/LICENSE' 2023-07-19T09:15:07,348 adding 'FunID-0.3.13.dist-info/METADATA' 2023-07-19T09:15:07,349 adding 'FunID-0.3.13.dist-info/WHEEL' 2023-07-19T09:15:07,350 adding 'FunID-0.3.13.dist-info/entry_points.txt' 2023-07-19T09:15:07,351 adding 'FunID-0.3.13.dist-info/top_level.txt' 2023-07-19T09:15:07,354 adding 'FunID-0.3.13.dist-info/RECORD' 2023-07-19T09:15:07,747 removing build/bdist.linux-armv7l/wheel 2023-07-19T09:15:07,904 Building wheel for funid (setup.py): finished with status 'done' 2023-07-19T09:15:08,415 Created wheel for funid: filename=FunID-0.3.13-py3-none-any.whl size=51527573 sha256=f3d7dc788b5d542e2b80267bb14782a3c1e055bb34a1fcda35dd752d9e3fe439 2023-07-19T09:15:08,416 Stored in directory: /tmp/pip-ephem-wheel-cache-ih3w4zkm/wheels/d9/f4/0e/1908141a91dfeef7f7cc7739e310420b37d9756e1a82d6cf60 2023-07-19T09:15:08,447 Successfully built funid 2023-07-19T09:15:09,672 Removed build tracker: '/tmp/pip-build-tracker-aj1731mt'