2023-07-20T02:35:23,504 Created temporary directory: /tmp/pip-build-tracker-lxt6zh3f 2023-07-20T02:35:23,505 Initialized build tracking at /tmp/pip-build-tracker-lxt6zh3f 2023-07-20T02:35:23,505 Created build tracker: /tmp/pip-build-tracker-lxt6zh3f 2023-07-20T02:35:23,505 Entered build tracker: /tmp/pip-build-tracker-lxt6zh3f 2023-07-20T02:35:23,506 Created temporary directory: /tmp/pip-wheel-289o8jdz 2023-07-20T02:35:23,509 Created temporary directory: /tmp/pip-ephem-wheel-cache-tnpm_ahb 2023-07-20T02:35:23,533 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-20T02:35:23,536 2 location(s) to search for versions of phynetpy: 2023-07-20T02:35:23,536 * https://pypi.org/simple/phynetpy/ 2023-07-20T02:35:23,536 * https://www.piwheels.org/simple/phynetpy/ 2023-07-20T02:35:23,536 Fetching project page and analyzing links: https://pypi.org/simple/phynetpy/ 2023-07-20T02:35:23,537 Getting page https://pypi.org/simple/phynetpy/ 2023-07-20T02:35:23,538 Found index url https://pypi.org/simple/ 2023-07-20T02:35:23,586 Fetched page https://pypi.org/simple/phynetpy/ as application/vnd.pypi.simple.v1+json 2023-07-20T02:35:23,587 Skipping link: No binaries permitted for phynetpy: https://files.pythonhosted.org/packages/ca/09/330fee700fddd31c7a667cc70c35300e3a4771a3eada01cfd210cffff202/PhyNetPy-0.0.1-py3-none-any.whl (from https://pypi.org/simple/phynetpy/) (requires-python:>=3.8) 2023-07-20T02:35:23,588 Found link https://files.pythonhosted.org/packages/54/64/f44b1c470fcdb4b2d4c5ad8a818b7a88df014660adac1ae3bac543f74922/PhyNetPy-0.1.0.tar.gz (from https://pypi.org/simple/phynetpy/) (requires-python:>=3.8), version: 0.1.0 2023-07-20T02:35:23,589 Fetching project page and analyzing links: https://www.piwheels.org/simple/phynetpy/ 2023-07-20T02:35:23,589 Getting page https://www.piwheels.org/simple/phynetpy/ 2023-07-20T02:35:23,590 Found index url https://www.piwheels.org/simple/ 2023-07-20T02:35:23,784 Fetched page https://www.piwheels.org/simple/phynetpy/ as text/html 2023-07-20T02:35:23,784 Skipping link: not a file: https://www.piwheels.org/simple/phynetpy/ 2023-07-20T02:35:23,785 Skipping link: not a file: https://pypi.org/simple/phynetpy/ 2023-07-20T02:35:23,802 Given no hashes to check 1 links for project 'phynetpy': discarding no candidates 2023-07-20T02:35:23,819 Collecting phynetpy==0.1.0 2023-07-20T02:35:23,821 Created temporary directory: /tmp/pip-unpack-z1yhl_q2 2023-07-20T02:35:23,939 Downloading PhyNetPy-0.1.0.tar.gz (75 kB) 2023-07-20T02:35:24,042 Added phynetpy==0.1.0 from https://files.pythonhosted.org/packages/54/64/f44b1c470fcdb4b2d4c5ad8a818b7a88df014660adac1ae3bac543f74922/PhyNetPy-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-lxt6zh3f' 2023-07-20T02:35:24,046 Created temporary directory: /tmp/pip-build-env-nki6li0p 2023-07-20T02:35:24,057 Installing build dependencies: started 2023-07-20T02:35:24,058 Running command pip subprocess to install build dependencies 2023-07-20T02:35:25,240 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-07-20T02:35:25,596 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-20T02:35:27,367 Collecting setuptools>=61.0.0 2023-07-20T02:35:27,441 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-07-20T02:35:27,695 Collecting wheel 2023-07-20T02:35:27,711 Using cached https://www.piwheels.org/simple/wheel/wheel-0.40.0-py3-none-any.whl (64 kB) 2023-07-20T02:35:29,491 Installing collected packages: wheel, setuptools 2023-07-20T02:35:29,737 Creating /tmp/pip-build-env-nki6li0p/overlay/bin 2023-07-20T02:35:29,739 changing mode of /tmp/pip-build-env-nki6li0p/overlay/bin/wheel to 755 2023-07-20T02:35:31,883 Successfully installed setuptools-68.0.0 wheel-0.40.0 2023-07-20T02:35:31,896 [notice] A new release of pip is available: 23.1.2 -> 23.2 2023-07-20T02:35:31,896 [notice] To update, run: python3 -m pip install --upgrade pip 2023-07-20T02:35:32,146 Installing build dependencies: finished with status 'done' 2023-07-20T02:35:32,152 Getting requirements to build wheel: started 2023-07-20T02:35:32,153 Running command Getting requirements to build wheel 2023-07-20T02:35:32,761 running egg_info 2023-07-20T02:35:32,765 writing src/PhyNetPy.egg-info/PKG-INFO 2023-07-20T02:35:32,767 writing dependency_links to src/PhyNetPy.egg-info/dependency_links.txt 2023-07-20T02:35:32,770 writing requirements to src/PhyNetPy.egg-info/requires.txt 2023-07-20T02:35:32,771 writing top-level names to src/PhyNetPy.egg-info/top_level.txt 2023-07-20T02:35:32,791 reading manifest file 'src/PhyNetPy.egg-info/SOURCES.txt' 2023-07-20T02:35:32,793 adding license file 'LICENSE' 2023-07-20T02:35:32,796 writing manifest file 'src/PhyNetPy.egg-info/SOURCES.txt' 2023-07-20T02:35:32,858 Getting requirements to build wheel: finished with status 'done' 2023-07-20T02:35:32,866 Created temporary directory: /tmp/pip-modern-metadata-wskw76hw 2023-07-20T02:35:32,868 Preparing metadata (pyproject.toml): started 2023-07-20T02:35:32,869 Running command Preparing metadata (pyproject.toml) 2023-07-20T02:35:33,399 running dist_info 2023-07-20T02:35:33,416 creating /tmp/pip-modern-metadata-wskw76hw/PhyNetPy.egg-info 2023-07-20T02:35:33,420 writing /tmp/pip-modern-metadata-wskw76hw/PhyNetPy.egg-info/PKG-INFO 2023-07-20T02:35:33,422 writing dependency_links to /tmp/pip-modern-metadata-wskw76hw/PhyNetPy.egg-info/dependency_links.txt 2023-07-20T02:35:33,424 writing requirements to /tmp/pip-modern-metadata-wskw76hw/PhyNetPy.egg-info/requires.txt 2023-07-20T02:35:33,425 writing top-level names to /tmp/pip-modern-metadata-wskw76hw/PhyNetPy.egg-info/top_level.txt 2023-07-20T02:35:33,426 writing manifest file '/tmp/pip-modern-metadata-wskw76hw/PhyNetPy.egg-info/SOURCES.txt' 2023-07-20T02:35:33,446 reading manifest file '/tmp/pip-modern-metadata-wskw76hw/PhyNetPy.egg-info/SOURCES.txt' 2023-07-20T02:35:33,448 adding license file 'LICENSE' 2023-07-20T02:35:33,451 writing manifest file '/tmp/pip-modern-metadata-wskw76hw/PhyNetPy.egg-info/SOURCES.txt' 2023-07-20T02:35:33,452 creating '/tmp/pip-modern-metadata-wskw76hw/PhyNetPy-0.1.0.dist-info' 2023-07-20T02:35:33,612 Preparing metadata (pyproject.toml): finished with status 'done' 2023-07-20T02:35:33,618 Source in /tmp/pip-wheel-289o8jdz/phynetpy_39950f93c61b4ab88d02abe8ef9022f7 has version 0.1.0, which satisfies requirement phynetpy==0.1.0 from https://files.pythonhosted.org/packages/54/64/f44b1c470fcdb4b2d4c5ad8a818b7a88df014660adac1ae3bac543f74922/PhyNetPy-0.1.0.tar.gz 2023-07-20T02:35:33,619 Removed phynetpy==0.1.0 from https://files.pythonhosted.org/packages/54/64/f44b1c470fcdb4b2d4c5ad8a818b7a88df014660adac1ae3bac543f74922/PhyNetPy-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-lxt6zh3f' 2023-07-20T02:35:33,625 Created temporary directory: /tmp/pip-unpack-1fr5lz_j 2023-07-20T02:35:33,625 Building wheels for collected packages: phynetpy 2023-07-20T02:35:33,629 Created temporary directory: /tmp/pip-wheel-wfyu7sot 2023-07-20T02:35:33,629 Destination directory: /tmp/pip-wheel-wfyu7sot 2023-07-20T02:35:33,631 Building wheel for phynetpy (pyproject.toml): started 2023-07-20T02:35:33,632 Running command Building wheel for phynetpy (pyproject.toml) 2023-07-20T02:35:34,200 running bdist_wheel 2023-07-20T02:35:34,231 running build 2023-07-20T02:35:34,232 running build_py 2023-07-20T02:35:34,240 creating build 2023-07-20T02:35:34,240 creating build/lib 2023-07-20T02:35:34,241 creating build/lib/PhyNetPy 2023-07-20T02:35:34,242 copying src/PhyNetPy/GeneTrees.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,244 copying src/PhyNetPy/Graph.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,246 copying src/PhyNetPy/BirthDeath.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,249 copying src/PhyNetPy/Matrix.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,251 copying src/PhyNetPy/PhySNP.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,253 copying src/PhyNetPy/PhyAllop.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,256 copying src/PhyNetPy/MetropolisHastings.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,259 copying src/PhyNetPy/GTR2.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,261 copying src/PhyNetPy/NetworkParser.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,263 copying src/PhyNetPy/ModelGraph.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,266 copying src/PhyNetPy/Alphabet.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,268 copying src/PhyNetPy/SequenceSim.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,270 copying src/PhyNetPy/State.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,271 copying src/PhyNetPy/tutorial_test.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,273 copying src/PhyNetPy/MSA.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,275 copying src/PhyNetPy/__init__.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,277 copying src/PhyNetPy/Node.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,279 copying src/PhyNetPy/ModelFactory.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,281 copying src/PhyNetPy/GTR.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,283 copying src/PhyNetPy/Move.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,286 copying src/PhyNetPy/Newick.py -> build/lib/PhyNetPy 2023-07-20T02:35:34,289 creating build/lib/PhyNetPy/Bayesian 2023-07-20T02:35:34,290 copying src/PhyNetPy/Bayesian/__init__.py -> build/lib/PhyNetPy/Bayesian 2023-07-20T02:35:34,291 running egg_info 2023-07-20T02:35:34,308 writing src/PhyNetPy.egg-info/PKG-INFO 2023-07-20T02:35:34,309 writing dependency_links to src/PhyNetPy.egg-info/dependency_links.txt 2023-07-20T02:35:34,311 writing requirements to src/PhyNetPy.egg-info/requires.txt 2023-07-20T02:35:34,312 writing top-level names to src/PhyNetPy.egg-info/top_level.txt 2023-07-20T02:35:34,320 reading manifest file 'src/PhyNetPy.egg-info/SOURCES.txt' 2023-07-20T02:35:34,323 adding license file 'LICENSE' 2023-07-20T02:35:34,326 writing manifest file 'src/PhyNetPy.egg-info/SOURCES.txt' 2023-07-20T02:35:34,343 installing to build/bdist.linux-armv7l/wheel 2023-07-20T02:35:34,343 running install 2023-07-20T02:35:34,368 running install_lib 2023-07-20T02:35:34,375 creating build/bdist.linux-armv7l 2023-07-20T02:35:34,376 creating build/bdist.linux-armv7l/wheel 2023-07-20T02:35:34,377 creating build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,378 copying build/lib/PhyNetPy/GeneTrees.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,380 copying build/lib/PhyNetPy/Graph.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,383 copying build/lib/PhyNetPy/BirthDeath.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,385 copying build/lib/PhyNetPy/Matrix.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,387 copying build/lib/PhyNetPy/PhySNP.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,390 copying build/lib/PhyNetPy/PhyAllop.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,393 copying build/lib/PhyNetPy/MetropolisHastings.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,395 copying build/lib/PhyNetPy/GTR2.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,398 copying build/lib/PhyNetPy/NetworkParser.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,400 copying build/lib/PhyNetPy/ModelGraph.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,403 copying build/lib/PhyNetPy/Alphabet.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,405 copying build/lib/PhyNetPy/SequenceSim.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,407 copying build/lib/PhyNetPy/State.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,409 copying build/lib/PhyNetPy/tutorial_test.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,410 copying build/lib/PhyNetPy/MSA.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,412 copying build/lib/PhyNetPy/__init__.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,414 copying build/lib/PhyNetPy/Node.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,417 creating build/bdist.linux-armv7l/wheel/PhyNetPy/Bayesian 2023-07-20T02:35:34,417 copying build/lib/PhyNetPy/Bayesian/__init__.py -> build/bdist.linux-armv7l/wheel/PhyNetPy/Bayesian 2023-07-20T02:35:34,419 copying build/lib/PhyNetPy/ModelFactory.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,421 copying build/lib/PhyNetPy/GTR.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,423 copying build/lib/PhyNetPy/Move.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,426 copying build/lib/PhyNetPy/Newick.py -> build/bdist.linux-armv7l/wheel/PhyNetPy 2023-07-20T02:35:34,428 running install_egg_info 2023-07-20T02:35:34,438 Copying src/PhyNetPy.egg-info to build/bdist.linux-armv7l/wheel/PhyNetPy-0.1.0-py3.9.egg-info 2023-07-20T02:35:34,450 running install_scripts 2023-07-20T02:35:34,469 creating build/bdist.linux-armv7l/wheel/PhyNetPy-0.1.0.dist-info/WHEEL 2023-07-20T02:35:34,471 creating '/tmp/pip-wheel-wfyu7sot/.tmp-loddzq8o/PhyNetPy-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-20T02:35:34,474 adding 'PhyNetPy/Alphabet.py' 2023-07-20T02:35:34,477 adding 'PhyNetPy/BirthDeath.py' 2023-07-20T02:35:34,479 adding 'PhyNetPy/GTR.py' 2023-07-20T02:35:34,481 adding 'PhyNetPy/GTR2.py' 2023-07-20T02:35:34,483 adding 'PhyNetPy/GeneTrees.py' 2023-07-20T02:35:34,487 adding 'PhyNetPy/Graph.py' 2023-07-20T02:35:34,489 adding 'PhyNetPy/MSA.py' 2023-07-20T02:35:34,491 adding 'PhyNetPy/Matrix.py' 2023-07-20T02:35:34,494 adding 'PhyNetPy/MetropolisHastings.py' 2023-07-20T02:35:34,496 adding 'PhyNetPy/ModelFactory.py' 2023-07-20T02:35:34,503 adding 'PhyNetPy/ModelGraph.py' 2023-07-20T02:35:34,509 adding 'PhyNetPy/Move.py' 2023-07-20T02:35:34,511 adding 'PhyNetPy/NetworkParser.py' 2023-07-20T02:35:34,513 adding 'PhyNetPy/Newick.py' 2023-07-20T02:35:34,515 adding 'PhyNetPy/Node.py' 2023-07-20T02:35:34,521 adding 'PhyNetPy/PhyAllop.py' 2023-07-20T02:35:34,525 adding 'PhyNetPy/PhySNP.py' 2023-07-20T02:35:34,527 adding 'PhyNetPy/SequenceSim.py' 2023-07-20T02:35:34,528 adding 'PhyNetPy/State.py' 2023-07-20T02:35:34,529 adding 'PhyNetPy/__init__.py' 2023-07-20T02:35:34,531 adding 'PhyNetPy/tutorial_test.py' 2023-07-20T02:35:34,532 adding 'PhyNetPy/Bayesian/__init__.py' 2023-07-20T02:35:34,535 adding 'PhyNetPy-0.1.0.dist-info/LICENSE' 2023-07-20T02:35:34,536 adding 'PhyNetPy-0.1.0.dist-info/METADATA' 2023-07-20T02:35:34,537 adding 'PhyNetPy-0.1.0.dist-info/WHEEL' 2023-07-20T02:35:34,538 adding 'PhyNetPy-0.1.0.dist-info/top_level.txt' 2023-07-20T02:35:34,539 adding 'PhyNetPy-0.1.0.dist-info/zip-safe' 2023-07-20T02:35:34,540 adding 'PhyNetPy-0.1.0.dist-info/RECORD' 2023-07-20T02:35:34,543 removing build/bdist.linux-armv7l/wheel 2023-07-20T02:35:34,626 Building wheel for phynetpy (pyproject.toml): finished with status 'done' 2023-07-20T02:35:34,634 Created wheel for phynetpy: filename=PhyNetPy-0.1.0-py3-none-any.whl size=83740 sha256=6e28656e552521e811ba9c1c9a7fe9b88ec882d9c1bfb898ea789ca8e45c98c7 2023-07-20T02:35:34,635 Stored in directory: /tmp/pip-ephem-wheel-cache-tnpm_ahb/wheels/7c/ba/1a/4f24d56e80936a2645d5551e6208ca68297d2e49656ff88c95 2023-07-20T02:35:34,647 Successfully built phynetpy 2023-07-20T02:35:34,653 Removed build tracker: '/tmp/pip-build-tracker-lxt6zh3f'