2023-07-22T03:51:58,758 Created temporary directory: /tmp/pip-build-tracker-znrpdt2b 2023-07-22T03:51:58,761 Initialized build tracking at /tmp/pip-build-tracker-znrpdt2b 2023-07-22T03:51:58,762 Created build tracker: /tmp/pip-build-tracker-znrpdt2b 2023-07-22T03:51:58,762 Entered build tracker: /tmp/pip-build-tracker-znrpdt2b 2023-07-22T03:51:58,763 Created temporary directory: /tmp/pip-wheel-ts7fx1a7 2023-07-22T03:51:58,771 Created temporary directory: /tmp/pip-ephem-wheel-cache-9yl3eoda 2023-07-22T03:51:58,824 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-22T03:51:58,832 2 location(s) to search for versions of cartimorph-nnunet: 2023-07-22T03:51:58,832 * https://pypi.org/simple/cartimorph-nnunet/ 2023-07-22T03:51:58,832 * https://www.piwheels.org/simple/cartimorph-nnunet/ 2023-07-22T03:51:58,833 Fetching project page and analyzing links: https://pypi.org/simple/cartimorph-nnunet/ 2023-07-22T03:51:58,834 Getting page https://pypi.org/simple/cartimorph-nnunet/ 2023-07-22T03:51:58,839 Found index url https://pypi.org/simple/ 2023-07-22T03:51:59,023 Fetched page https://pypi.org/simple/cartimorph-nnunet/ as application/vnd.pypi.simple.v1+json 2023-07-22T03:51:59,026 Skipping link: No binaries permitted for cartimorph-nnunet: https://files.pythonhosted.org/packages/59/4c/5048844130234c407c3d3c3058f3fdd5757d03f4cf2828d2f77be0e187e2/CartiMorph_nnUNet-1.7.14-py3-none-any.whl (from https://pypi.org/simple/cartimorph-nnunet/) 2023-07-22T03:51:59,026 Found link https://files.pythonhosted.org/packages/f6/31/a30f2b213cea9b5ec8e997029106c324ef74c885ff7be3913630fd7868ae/CartiMorph_nnUNet-1.7.14.tar.gz (from https://pypi.org/simple/cartimorph-nnunet/), version: 1.7.14 2023-07-22T03:51:59,027 Fetching project page and analyzing links: https://www.piwheels.org/simple/cartimorph-nnunet/ 2023-07-22T03:51:59,028 Getting page https://www.piwheels.org/simple/cartimorph-nnunet/ 2023-07-22T03:51:59,030 Found index url https://www.piwheels.org/simple/ 2023-07-22T03:51:59,243 Fetched page https://www.piwheels.org/simple/cartimorph-nnunet/ as text/html 2023-07-22T03:51:59,245 Skipping link: not a file: https://www.piwheels.org/simple/cartimorph-nnunet/ 2023-07-22T03:51:59,245 Skipping link: not a file: https://pypi.org/simple/cartimorph-nnunet/ 2023-07-22T03:51:59,278 Given no hashes to check 1 links for project 'cartimorph-nnunet': discarding no candidates 2023-07-22T03:51:59,309 Collecting cartimorph-nnunet==1.7.14 2023-07-22T03:51:59,314 Created temporary directory: /tmp/pip-unpack-ys87vz2e 2023-07-22T03:51:59,491 Downloading CartiMorph_nnUNet-1.7.14.tar.gz (158 kB) 2023-07-22T03:52:00,169 Added cartimorph-nnunet==1.7.14 from https://files.pythonhosted.org/packages/f6/31/a30f2b213cea9b5ec8e997029106c324ef74c885ff7be3913630fd7868ae/CartiMorph_nnUNet-1.7.14.tar.gz to build tracker '/tmp/pip-build-tracker-znrpdt2b' 2023-07-22T03:52:00,174 Running setup.py (path:/tmp/pip-wheel-ts7fx1a7/cartimorph-nnunet_74feb02e84714381b937db46ac2b7326/setup.py) egg_info for package cartimorph-nnunet 2023-07-22T03:52:00,175 Created temporary directory: /tmp/pip-pip-egg-info-t1eg4eh3 2023-07-22T03:52:00,176 Preparing metadata (setup.py): started 2023-07-22T03:52:00,178 Running command python setup.py egg_info 2023-07-22T03:52:01,764 running egg_info 2023-07-22T03:52:01,769 creating /tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info 2023-07-22T03:52:01,833 writing /tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info/PKG-INFO 2023-07-22T03:52:01,838 writing dependency_links to /tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info/dependency_links.txt 2023-07-22T03:52:01,843 writing entry points to /tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info/entry_points.txt 2023-07-22T03:52:01,847 writing requirements to /tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info/requires.txt 2023-07-22T03:52:01,850 writing top-level names to /tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info/top_level.txt 2023-07-22T03:52:01,853 writing manifest file '/tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info/SOURCES.txt' 2023-07-22T03:52:02,098 reading manifest file '/tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info/SOURCES.txt' 2023-07-22T03:52:02,102 adding license file 'LICENSE' 2023-07-22T03:52:02,119 writing manifest file '/tmp/pip-pip-egg-info-t1eg4eh3/CartiMorph_nnUNet.egg-info/SOURCES.txt' 2023-07-22T03:52:02,242 Preparing metadata (setup.py): finished with status 'done' 2023-07-22T03:52:02,255 Source in /tmp/pip-wheel-ts7fx1a7/cartimorph-nnunet_74feb02e84714381b937db46ac2b7326 has version 1.7.14, which satisfies requirement cartimorph-nnunet==1.7.14 from https://files.pythonhosted.org/packages/f6/31/a30f2b213cea9b5ec8e997029106c324ef74c885ff7be3913630fd7868ae/CartiMorph_nnUNet-1.7.14.tar.gz 2023-07-22T03:52:02,257 Removed cartimorph-nnunet==1.7.14 from https://files.pythonhosted.org/packages/f6/31/a30f2b213cea9b5ec8e997029106c324ef74c885ff7be3913630fd7868ae/CartiMorph_nnUNet-1.7.14.tar.gz from build tracker '/tmp/pip-build-tracker-znrpdt2b' 2023-07-22T03:52:02,267 Created temporary directory: /tmp/pip-unpack-nv0gsoap 2023-07-22T03:52:02,268 Building wheels for collected packages: cartimorph-nnunet 2023-07-22T03:52:02,277 Created temporary directory: /tmp/pip-wheel-fghv_kmr 2023-07-22T03:52:02,278 Building wheel for cartimorph-nnunet (setup.py): started 2023-07-22T03:52:02,280 Destination directory: /tmp/pip-wheel-fghv_kmr 2023-07-22T03:52:02,281 Running command python setup.py bdist_wheel 2023-07-22T03:52:03,916 running bdist_wheel 2023-07-22T03:52:04,633 running build 2023-07-22T03:52:04,633 running build_py 2023-07-22T03:52:04,705 creating build 2023-07-22T03:52:04,706 creating build/lib 2023-07-22T03:52:04,708 creating build/lib/CartiMorph_nnUNet 2023-07-22T03:52:04,710 copying CartiMorph_nnUNet/configuration.py -> build/lib/CartiMorph_nnUNet 2023-07-22T03:52:04,714 copying CartiMorph_nnUNet/paths.py -> build/lib/CartiMorph_nnUNet 2023-07-22T03:52:04,718 copying CartiMorph_nnUNet/__init__.py -> build/lib/CartiMorph_nnUNet 2023-07-22T03:52:04,724 creating build/lib/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:04,726 copying CartiMorph_nnUNet/evaluation/metrics.py -> build/lib/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:04,731 copying CartiMorph_nnUNet/evaluation/evaluator.py -> build/lib/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:04,735 copying CartiMorph_nnUNet/evaluation/__init__.py -> build/lib/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:04,740 copying CartiMorph_nnUNet/evaluation/add_mean_dice_to_json.py -> build/lib/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:04,746 creating build/lib/CartiMorph_nnUNet/training 2023-07-22T03:52:04,748 copying CartiMorph_nnUNet/training/__init__.py -> build/lib/CartiMorph_nnUNet/training 2023-07-22T03:52:04,752 copying CartiMorph_nnUNet/training/model_restore.py -> build/lib/CartiMorph_nnUNet/training 2023-07-22T03:52:04,757 creating build/lib/CartiMorph_nnUNet/inference 2023-07-22T03:52:04,759 copying CartiMorph_nnUNet/inference/ensemble_predictions.py -> build/lib/CartiMorph_nnUNet/inference 2023-07-22T03:52:04,763 copying CartiMorph_nnUNet/inference/__init__.py -> build/lib/CartiMorph_nnUNet/inference 2023-07-22T03:52:04,768 copying CartiMorph_nnUNet/inference/predict_simple.py -> build/lib/CartiMorph_nnUNet/inference 2023-07-22T03:52:04,772 copying CartiMorph_nnUNet/inference/segmentation_export.py -> build/lib/CartiMorph_nnUNet/inference 2023-07-22T03:52:04,777 copying CartiMorph_nnUNet/inference/predict.py -> build/lib/CartiMorph_nnUNet/inference 2023-07-22T03:52:04,787 creating build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,789 copying CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,794 copying CartiMorph_nnUNet/experiment_planning/DatasetAnalyzer.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,799 copying CartiMorph_nnUNet/experiment_planning/common_utils.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,804 copying CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet_v21.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,808 copying CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet_v21.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,813 copying CartiMorph_nnUNet/experiment_planning/nnUNet_plan_and_preprocess.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,817 copying CartiMorph_nnUNet/experiment_planning/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,820 copying CartiMorph_nnUNet/experiment_planning/summarize_plans.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,825 copying CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,831 copying CartiMorph_nnUNet/experiment_planning/utils.py -> build/lib/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:04,837 creating build/lib/CartiMorph_nnUNet/run 2023-07-22T03:52:04,840 copying CartiMorph_nnUNet/run/run_training.py -> build/lib/CartiMorph_nnUNet/run 2023-07-22T03:52:04,844 copying CartiMorph_nnUNet/run/load_pretrained_weights.py -> build/lib/CartiMorph_nnUNet/run 2023-07-22T03:52:04,848 copying CartiMorph_nnUNet/run/__init__.py -> build/lib/CartiMorph_nnUNet/run 2023-07-22T03:52:04,851 copying CartiMorph_nnUNet/run/default_configuration.py -> build/lib/CartiMorph_nnUNet/run 2023-07-22T03:52:04,857 creating build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,859 copying CartiMorph_nnUNet/utilities/task_name_id_conversion.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,863 copying CartiMorph_nnUNet/utilities/one_hot_encoding.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,866 copying CartiMorph_nnUNet/utilities/__init__.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,870 copying CartiMorph_nnUNet/utilities/tensor_utilities.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,873 copying CartiMorph_nnUNet/utilities/sitk_stuff.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,877 copying CartiMorph_nnUNet/utilities/to_torch.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,881 copying CartiMorph_nnUNet/utilities/nd_softmax.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,884 copying CartiMorph_nnUNet/utilities/set_n_proc_DA.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,888 copying CartiMorph_nnUNet/utilities/folder_names.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,891 copying CartiMorph_nnUNet/utilities/random_stuff.py -> build/lib/CartiMorph_nnUNet/utilities 2023-07-22T03:52:04,897 creating build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,899 copying CartiMorph_nnUNet/network_architecture/generic_modular_UNet.py -> build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,904 copying CartiMorph_nnUNet/network_architecture/generic_UNet.py -> build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,910 copying CartiMorph_nnUNet/network_architecture/generic_modular_preact_residual_UNet.py -> build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,915 copying CartiMorph_nnUNet/network_architecture/initialization.py -> build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,918 copying CartiMorph_nnUNet/network_architecture/__init__.py -> build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,922 copying CartiMorph_nnUNet/network_architecture/generic_modular_residual_UNet.py -> build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,928 copying CartiMorph_nnUNet/network_architecture/neural_network.py -> build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,935 copying CartiMorph_nnUNet/network_architecture/generic_UNet_DP.py -> build/lib/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:04,940 creating build/lib/CartiMorph_nnUNet/dataset_conversion 2023-07-22T03:52:04,942 copying CartiMorph_nnUNet/dataset_conversion/__init__.py -> build/lib/CartiMorph_nnUNet/dataset_conversion 2023-07-22T03:52:04,946 copying CartiMorph_nnUNet/dataset_conversion/utils.py -> build/lib/CartiMorph_nnUNet/dataset_conversion 2023-07-22T03:52:04,951 creating build/lib/CartiMorph_nnUNet/postprocessing 2023-07-22T03:52:04,953 copying CartiMorph_nnUNet/postprocessing/connected_components.py -> build/lib/CartiMorph_nnUNet/postprocessing 2023-07-22T03:52:04,959 copying CartiMorph_nnUNet/postprocessing/__init__.py -> build/lib/CartiMorph_nnUNet/postprocessing 2023-07-22T03:52:04,962 copying CartiMorph_nnUNet/postprocessing/consolidate_postprocessing.py -> build/lib/CartiMorph_nnUNet/postprocessing 2023-07-22T03:52:04,967 creating build/lib/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:04,969 copying CartiMorph_nnUNet/preprocessing/__init__.py -> build/lib/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:04,973 copying CartiMorph_nnUNet/preprocessing/preprocessing.py -> build/lib/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:04,979 copying CartiMorph_nnUNet/preprocessing/cropping.py -> build/lib/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:04,984 copying CartiMorph_nnUNet/preprocessing/sanity_checks.py -> build/lib/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:04,989 creating build/lib/CartiMorph_nnUNet/evaluation/model_selection 2023-07-22T03:52:04,991 copying CartiMorph_nnUNet/evaluation/model_selection/ensemble.py -> build/lib/CartiMorph_nnUNet/evaluation/model_selection 2023-07-22T03:52:04,996 copying CartiMorph_nnUNet/evaluation/model_selection/__init__.py -> build/lib/CartiMorph_nnUNet/evaluation/model_selection 2023-07-22T03:52:05,000 copying CartiMorph_nnUNet/evaluation/model_selection/figure_out_what_to_submit.py -> build/lib/CartiMorph_nnUNet/evaluation/model_selection 2023-07-22T03:52:05,007 creating build/lib/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,009 copying CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2.py -> build/lib/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,016 copying CartiMorph_nnUNet/training/network_training/nnUNetTrainer.py -> build/lib/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,023 copying CartiMorph_nnUNet/training/network_training/network_trainer.py -> build/lib/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,029 copying CartiMorph_nnUNet/training/network_training/__init__.py -> build/lib/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,033 copying CartiMorph_nnUNet/training/network_training/nnUNetTrainerCascadeFullRes.py -> build/lib/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,039 copying CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2_CascadeFullRes.py -> build/lib/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,046 creating build/lib/CartiMorph_nnUNet/training/dataloading 2023-07-22T03:52:05,048 copying CartiMorph_nnUNet/training/dataloading/__init__.py -> build/lib/CartiMorph_nnUNet/training/dataloading 2023-07-22T03:52:05,052 copying CartiMorph_nnUNet/training/dataloading/dataset_loading.py -> build/lib/CartiMorph_nnUNet/training/dataloading 2023-07-22T03:52:05,061 creating build/lib/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,063 copying CartiMorph_nnUNet/training/data_augmentation/pyramid_augmentations.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,068 copying CartiMorph_nnUNet/training/data_augmentation/custom_transforms.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,073 copying CartiMorph_nnUNet/training/data_augmentation/downsampling.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,078 copying CartiMorph_nnUNet/training/data_augmentation/__init__.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,082 copying CartiMorph_nnUNet/training/data_augmentation/data_augmentation_moreDA.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,088 copying CartiMorph_nnUNet/training/data_augmentation/default_data_augmentation.py -> build/lib/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,094 creating build/lib/CartiMorph_nnUNet/training/cascade_stuff 2023-07-22T03:52:05,097 copying CartiMorph_nnUNet/training/cascade_stuff/__init__.py -> build/lib/CartiMorph_nnUNet/training/cascade_stuff 2023-07-22T03:52:05,101 copying CartiMorph_nnUNet/training/cascade_stuff/predict_next_stage.py -> build/lib/CartiMorph_nnUNet/training/cascade_stuff 2023-07-22T03:52:05,107 creating build/lib/CartiMorph_nnUNet/training/learning_rate 2023-07-22T03:52:05,109 copying CartiMorph_nnUNet/training/learning_rate/__init__.py -> build/lib/CartiMorph_nnUNet/training/learning_rate 2023-07-22T03:52:05,112 copying CartiMorph_nnUNet/training/learning_rate/poly_lr.py -> build/lib/CartiMorph_nnUNet/training/learning_rate 2023-07-22T03:52:05,118 creating build/lib/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,119 copying CartiMorph_nnUNet/training/loss_functions/focal_loss.py -> build/lib/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,124 copying CartiMorph_nnUNet/training/loss_functions/crossentropy.py -> build/lib/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,127 copying CartiMorph_nnUNet/training/loss_functions/__init__.py -> build/lib/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,131 copying CartiMorph_nnUNet/training/loss_functions/dice_loss.py -> build/lib/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,136 copying CartiMorph_nnUNet/training/loss_functions/TopK_loss.py -> build/lib/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,139 copying CartiMorph_nnUNet/training/loss_functions/deep_supervision.py -> build/lib/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,144 creating build/lib/CartiMorph_nnUNet/training/optimizer 2023-07-22T03:52:05,146 copying CartiMorph_nnUNet/training/optimizer/ranger.py -> build/lib/CartiMorph_nnUNet/training/optimizer 2023-07-22T03:52:05,151 copying CartiMorph_nnUNet/training/optimizer/__init__.py -> build/lib/CartiMorph_nnUNet/training/optimizer 2023-07-22T03:52:05,156 creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,158 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_11GB.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,162 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_residual_3DUNet_v21.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,167 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_3convperstage.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,171 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,174 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v22.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,179 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v23.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,182 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_32GB.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,187 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_pretrained.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,191 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_16GB.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,197 creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size 2023-07-22T03:52:05,199 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_voxels.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size 2023-07-22T03:52:05,204 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size 2023-07-22T03:52:05,207 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_mm.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size 2023-07-22T03:52:05,213 creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,215 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,218 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_2DUNet_v21_RGB_scaleto_0_1.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,223 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_CT2.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,227 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_nonCT.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,232 creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs 2023-07-22T03:52:05,234 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs 2023-07-22T03:52:05,237 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_allConv3x3.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs 2023-07-22T03:52:05,242 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_poolBasedOnSpacing.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs 2023-07-22T03:52:05,247 creating build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,249 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_targetSpacingForAnisoAxis.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,253 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/__init__.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,256 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_customTargetSpacing_2x2x2.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,260 copying CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_noResampling.py -> build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,266 creating build/lib/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:05,268 copying CartiMorph_nnUNet/network_architecture/custom_modules/feature_response_normalization.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:05,272 copying CartiMorph_nnUNet/network_architecture/custom_modules/mish.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:05,275 copying CartiMorph_nnUNet/network_architecture/custom_modules/__init__.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:05,278 copying CartiMorph_nnUNet/network_architecture/custom_modules/helperModules.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:05,282 copying CartiMorph_nnUNet/network_architecture/custom_modules/conv_blocks.py -> build/lib/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:05,396 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-22T03:52:05,396 !! 2023-07-22T03:52:05,397 ******************************************************************************** 2023-07-22T03:52:05,397 Please avoid running ``setup.py`` directly. 2023-07-22T03:52:05,398 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-22T03:52:05,398 other standards-based tools. 2023-07-22T03:52:05,399 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-22T03:52:05,399 ******************************************************************************** 2023-07-22T03:52:05,400 !! 2023-07-22T03:52:05,400 self.initialize_options() 2023-07-22T03:52:05,464 installing to build/bdist.linux-armv7l/wheel 2023-07-22T03:52:05,464 running install 2023-07-22T03:52:05,524 running install_lib 2023-07-22T03:52:05,594 creating build/bdist.linux-armv7l 2023-07-22T03:52:05,595 creating build/bdist.linux-armv7l/wheel 2023-07-22T03:52:05,598 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet 2023-07-22T03:52:05,600 copying build/lib/CartiMorph_nnUNet/configuration.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet 2023-07-22T03:52:05,605 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:05,607 copying build/lib/CartiMorph_nnUNet/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:05,612 copying build/lib/CartiMorph_nnUNet/evaluation/evaluator.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:05,618 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation/model_selection 2023-07-22T03:52:05,620 copying build/lib/CartiMorph_nnUNet/evaluation/model_selection/ensemble.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation/model_selection 2023-07-22T03:52:05,624 copying build/lib/CartiMorph_nnUNet/evaluation/model_selection/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation/model_selection 2023-07-22T03:52:05,628 copying build/lib/CartiMorph_nnUNet/evaluation/model_selection/figure_out_what_to_submit.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation/model_selection 2023-07-22T03:52:05,633 copying build/lib/CartiMorph_nnUNet/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:05,636 copying build/lib/CartiMorph_nnUNet/evaluation/add_mean_dice_to_json.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/evaluation 2023-07-22T03:52:05,640 copying build/lib/CartiMorph_nnUNet/paths.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet 2023-07-22T03:52:05,644 copying build/lib/CartiMorph_nnUNet/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet 2023-07-22T03:52:05,649 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training 2023-07-22T03:52:05,651 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,653 copying build/lib/CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,659 copying build/lib/CartiMorph_nnUNet/training/network_training/nnUNetTrainer.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,664 copying build/lib/CartiMorph_nnUNet/training/network_training/network_trainer.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,670 copying build/lib/CartiMorph_nnUNet/training/network_training/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,675 copying build/lib/CartiMorph_nnUNet/training/network_training/nnUNetTrainerCascadeFullRes.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,679 copying build/lib/CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2_CascadeFullRes.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/network_training 2023-07-22T03:52:05,685 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/dataloading 2023-07-22T03:52:05,687 copying build/lib/CartiMorph_nnUNet/training/dataloading/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/dataloading 2023-07-22T03:52:05,691 copying build/lib/CartiMorph_nnUNet/training/dataloading/dataset_loading.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/dataloading 2023-07-22T03:52:05,698 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,700 copying build/lib/CartiMorph_nnUNet/training/data_augmentation/pyramid_augmentations.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,705 copying build/lib/CartiMorph_nnUNet/training/data_augmentation/custom_transforms.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,709 copying build/lib/CartiMorph_nnUNet/training/data_augmentation/downsampling.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,714 copying build/lib/CartiMorph_nnUNet/training/data_augmentation/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,718 copying build/lib/CartiMorph_nnUNet/training/data_augmentation/data_augmentation_moreDA.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,723 copying build/lib/CartiMorph_nnUNet/training/data_augmentation/default_data_augmentation.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/data_augmentation 2023-07-22T03:52:05,728 copying build/lib/CartiMorph_nnUNet/training/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training 2023-07-22T03:52:05,732 copying build/lib/CartiMorph_nnUNet/training/model_restore.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training 2023-07-22T03:52:05,738 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/cascade_stuff 2023-07-22T03:52:05,741 copying build/lib/CartiMorph_nnUNet/training/cascade_stuff/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/cascade_stuff 2023-07-22T03:52:05,745 copying build/lib/CartiMorph_nnUNet/training/cascade_stuff/predict_next_stage.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/cascade_stuff 2023-07-22T03:52:05,751 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/learning_rate 2023-07-22T03:52:05,753 copying build/lib/CartiMorph_nnUNet/training/learning_rate/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/learning_rate 2023-07-22T03:52:05,756 copying build/lib/CartiMorph_nnUNet/training/learning_rate/poly_lr.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/learning_rate 2023-07-22T03:52:05,760 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,762 copying build/lib/CartiMorph_nnUNet/training/loss_functions/focal_loss.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,767 copying build/lib/CartiMorph_nnUNet/training/loss_functions/crossentropy.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,770 copying build/lib/CartiMorph_nnUNet/training/loss_functions/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,774 copying build/lib/CartiMorph_nnUNet/training/loss_functions/dice_loss.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,779 copying build/lib/CartiMorph_nnUNet/training/loss_functions/TopK_loss.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,782 copying build/lib/CartiMorph_nnUNet/training/loss_functions/deep_supervision.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/loss_functions 2023-07-22T03:52:05,787 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/optimizer 2023-07-22T03:52:05,789 copying build/lib/CartiMorph_nnUNet/training/optimizer/ranger.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/optimizer 2023-07-22T03:52:05,793 copying build/lib/CartiMorph_nnUNet/training/optimizer/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/training/optimizer 2023-07-22T03:52:05,797 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference 2023-07-22T03:52:05,799 copying build/lib/CartiMorph_nnUNet/inference/ensemble_predictions.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference 2023-07-22T03:52:05,803 copying build/lib/CartiMorph_nnUNet/inference/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference 2023-07-22T03:52:05,807 copying build/lib/CartiMorph_nnUNet/inference/predict_simple.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference 2023-07-22T03:52:05,812 copying build/lib/CartiMorph_nnUNet/inference/segmentation_export.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference 2023-07-22T03:52:05,816 copying build/lib/CartiMorph_nnUNet/inference/predict.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/inference 2023-07-22T03:52:05,823 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,825 copying build/lib/CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,830 copying build/lib/CartiMorph_nnUNet/experiment_planning/DatasetAnalyzer.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,834 copying build/lib/CartiMorph_nnUNet/experiment_planning/common_utils.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,839 copying build/lib/CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet_v21.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,843 copying build/lib/CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet_v21.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,847 copying build/lib/CartiMorph_nnUNet/experiment_planning/nnUNet_plan_and_preprocess.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,852 copying build/lib/CartiMorph_nnUNet/experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,857 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,859 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_11GB.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,863 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_residual_3DUNet_v21.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,869 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size 2023-07-22T03:52:05,870 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_voxels.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size 2023-07-22T03:52:05,875 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size 2023-07-22T03:52:05,878 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_mm.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size 2023-07-22T03:52:05,882 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_3convperstage.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,886 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,889 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v22.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,892 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v23.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,896 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_32GB.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,901 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,903 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,907 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_2DUNet_v21_RGB_scaleto_0_1.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,910 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_CT2.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,914 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_nonCT.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization 2023-07-22T03:52:05,918 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs 2023-07-22T03:52:05,920 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs 2023-07-22T03:52:05,923 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_allConv3x3.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs 2023-07-22T03:52:05,928 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_poolBasedOnSpacing.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs 2023-07-22T03:52:05,933 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,934 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_targetSpacingForAnisoAxis.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,939 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,943 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_customTargetSpacing_2x2x2.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,948 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_noResampling.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing 2023-07-22T03:52:05,952 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_pretrained.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,956 copying build/lib/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_16GB.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning 2023-07-22T03:52:05,961 copying build/lib/CartiMorph_nnUNet/experiment_planning/summarize_plans.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,965 copying build/lib/CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,971 copying build/lib/CartiMorph_nnUNet/experiment_planning/utils.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/experiment_planning 2023-07-22T03:52:05,977 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run 2023-07-22T03:52:05,979 copying build/lib/CartiMorph_nnUNet/run/run_training.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run 2023-07-22T03:52:05,985 copying build/lib/CartiMorph_nnUNet/run/load_pretrained_weights.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run 2023-07-22T03:52:05,990 copying build/lib/CartiMorph_nnUNet/run/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run 2023-07-22T03:52:05,994 copying build/lib/CartiMorph_nnUNet/run/default_configuration.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/run 2023-07-22T03:52:05,999 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,000 copying build/lib/CartiMorph_nnUNet/utilities/task_name_id_conversion.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,004 copying build/lib/CartiMorph_nnUNet/utilities/one_hot_encoding.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,008 copying build/lib/CartiMorph_nnUNet/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,012 copying build/lib/CartiMorph_nnUNet/utilities/tensor_utilities.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,016 copying build/lib/CartiMorph_nnUNet/utilities/sitk_stuff.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,020 copying build/lib/CartiMorph_nnUNet/utilities/to_torch.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,023 copying build/lib/CartiMorph_nnUNet/utilities/nd_softmax.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,027 copying build/lib/CartiMorph_nnUNet/utilities/set_n_proc_DA.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,030 copying build/lib/CartiMorph_nnUNet/utilities/folder_names.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,034 copying build/lib/CartiMorph_nnUNet/utilities/random_stuff.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/utilities 2023-07-22T03:52:06,039 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,041 copying build/lib/CartiMorph_nnUNet/network_architecture/generic_modular_UNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,046 copying build/lib/CartiMorph_nnUNet/network_architecture/generic_UNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,051 copying build/lib/CartiMorph_nnUNet/network_architecture/generic_modular_preact_residual_UNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,057 copying build/lib/CartiMorph_nnUNet/network_architecture/initialization.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,060 copying build/lib/CartiMorph_nnUNet/network_architecture/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,065 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:06,066 copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/feature_response_normalization.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:06,070 copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/mish.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:06,074 copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:06,078 copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/helperModules.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:06,081 copying build/lib/CartiMorph_nnUNet/network_architecture/custom_modules/conv_blocks.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture/custom_modules 2023-07-22T03:52:06,086 copying build/lib/CartiMorph_nnUNet/network_architecture/generic_modular_residual_UNet.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,091 copying build/lib/CartiMorph_nnUNet/network_architecture/neural_network.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,097 copying build/lib/CartiMorph_nnUNet/network_architecture/generic_UNet_DP.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/network_architecture 2023-07-22T03:52:06,103 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/dataset_conversion 2023-07-22T03:52:06,104 copying build/lib/CartiMorph_nnUNet/dataset_conversion/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/dataset_conversion 2023-07-22T03:52:06,108 copying build/lib/CartiMorph_nnUNet/dataset_conversion/utils.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/dataset_conversion 2023-07-22T03:52:06,113 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/postprocessing 2023-07-22T03:52:06,115 copying build/lib/CartiMorph_nnUNet/postprocessing/connected_components.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/postprocessing 2023-07-22T03:52:06,120 copying build/lib/CartiMorph_nnUNet/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/postprocessing 2023-07-22T03:52:06,123 copying build/lib/CartiMorph_nnUNet/postprocessing/consolidate_postprocessing.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/postprocessing 2023-07-22T03:52:06,128 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:06,130 copying build/lib/CartiMorph_nnUNet/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:06,134 copying build/lib/CartiMorph_nnUNet/preprocessing/preprocessing.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:06,141 copying build/lib/CartiMorph_nnUNet/preprocessing/cropping.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:06,146 copying build/lib/CartiMorph_nnUNet/preprocessing/sanity_checks.py -> build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet/preprocessing 2023-07-22T03:52:06,150 running install_egg_info 2023-07-22T03:52:06,313 running egg_info 2023-07-22T03:52:06,378 writing CartiMorph_nnUNet.egg-info/PKG-INFO 2023-07-22T03:52:06,381 writing dependency_links to CartiMorph_nnUNet.egg-info/dependency_links.txt 2023-07-22T03:52:06,386 writing entry points to CartiMorph_nnUNet.egg-info/entry_points.txt 2023-07-22T03:52:06,389 writing requirements to CartiMorph_nnUNet.egg-info/requires.txt 2023-07-22T03:52:06,391 writing top-level names to CartiMorph_nnUNet.egg-info/top_level.txt 2023-07-22T03:52:06,499 reading manifest file 'CartiMorph_nnUNet.egg-info/SOURCES.txt' 2023-07-22T03:52:06,510 adding license file 'LICENSE' 2023-07-22T03:52:06,531 writing manifest file 'CartiMorph_nnUNet.egg-info/SOURCES.txt' 2023-07-22T03:52:06,534 Copying CartiMorph_nnUNet.egg-info to build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet-1.7.14-py3.7.egg-info 2023-07-22T03:52:06,559 running install_scripts 2023-07-22T03:52:06,598 creating build/bdist.linux-armv7l/wheel/CartiMorph_nnUNet-1.7.14.dist-info/WHEEL 2023-07-22T03:52:06,604 creating '/tmp/pip-wheel-fghv_kmr/CartiMorph_nnUNet-1.7.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-22T03:52:06,610 adding 'CartiMorph_nnUNet/__init__.py' 2023-07-22T03:52:06,612 adding 'CartiMorph_nnUNet/configuration.py' 2023-07-22T03:52:06,615 adding 'CartiMorph_nnUNet/paths.py' 2023-07-22T03:52:06,619 adding 'CartiMorph_nnUNet/dataset_conversion/__init__.py' 2023-07-22T03:52:06,622 adding 'CartiMorph_nnUNet/dataset_conversion/utils.py' 2023-07-22T03:52:06,626 adding 'CartiMorph_nnUNet/evaluation/__init__.py' 2023-07-22T03:52:06,629 adding 'CartiMorph_nnUNet/evaluation/add_mean_dice_to_json.py' 2023-07-22T03:52:06,635 adding 'CartiMorph_nnUNet/evaluation/evaluator.py' 2023-07-22T03:52:06,639 adding 'CartiMorph_nnUNet/evaluation/metrics.py' 2023-07-22T03:52:06,642 adding 'CartiMorph_nnUNet/evaluation/model_selection/__init__.py' 2023-07-22T03:52:06,646 adding 'CartiMorph_nnUNet/evaluation/model_selection/ensemble.py' 2023-07-22T03:52:06,650 adding 'CartiMorph_nnUNet/evaluation/model_selection/figure_out_what_to_submit.py' 2023-07-22T03:52:06,656 adding 'CartiMorph_nnUNet/experiment_planning/DatasetAnalyzer.py' 2023-07-22T03:52:06,659 adding 'CartiMorph_nnUNet/experiment_planning/__init__.py' 2023-07-22T03:52:06,662 adding 'CartiMorph_nnUNet/experiment_planning/common_utils.py' 2023-07-22T03:52:06,667 adding 'CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet.py' 2023-07-22T03:52:06,670 adding 'CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_2DUNet_v21.py' 2023-07-22T03:52:06,677 adding 'CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet.py' 2023-07-22T03:52:06,682 adding 'CartiMorph_nnUNet/experiment_planning/experiment_planner_baseline_3DUNet_v21.py' 2023-07-22T03:52:06,687 adding 'CartiMorph_nnUNet/experiment_planning/nnUNet_plan_and_preprocess.py' 2023-07-22T03:52:06,690 adding 'CartiMorph_nnUNet/experiment_planning/summarize_plans.py' 2023-07-22T03:52:06,694 adding 'CartiMorph_nnUNet/experiment_planning/utils.py' 2023-07-22T03:52:06,698 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/__init__.py' 2023-07-22T03:52:06,702 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_11GB.py' 2023-07-22T03:52:06,705 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_16GB.py' 2023-07-22T03:52:06,709 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_32GB.py' 2023-07-22T03:52:06,711 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v21_3convperstage.py' 2023-07-22T03:52:06,714 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v22.py' 2023-07-22T03:52:06,717 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_baseline_3DUNet_v23.py' 2023-07-22T03:52:06,720 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_pretrained.py' 2023-07-22T03:52:06,723 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/experiment_planner_residual_3DUNet_v21.py' 2023-07-22T03:52:06,727 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/__init__.py' 2023-07-22T03:52:06,730 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_2DUNet_v21_RGB_scaleto_0_1.py' 2023-07-22T03:52:06,732 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_CT2.py' 2023-07-22T03:52:06,735 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/normalization/experiment_planner_3DUNet_nonCT.py' 2023-07-22T03:52:06,738 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/__init__.py' 2023-07-22T03:52:06,742 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_mm.py' 2023-07-22T03:52:06,745 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/patch_size/experiment_planner_3DUNet_isotropic_in_voxels.py' 2023-07-22T03:52:06,749 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/__init__.py' 2023-07-22T03:52:06,752 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_allConv3x3.py' 2023-07-22T03:52:06,757 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/pooling_and_convs/experiment_planner_baseline_3DUNet_poolBasedOnSpacing.py' 2023-07-22T03:52:06,761 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/__init__.py' 2023-07-22T03:52:06,764 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_targetSpacingForAnisoAxis.py' 2023-07-22T03:52:06,767 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_customTargetSpacing_2x2x2.py' 2023-07-22T03:52:06,770 adding 'CartiMorph_nnUNet/experiment_planning/alternative_experiment_planning/target_spacing/experiment_planner_baseline_3DUNet_v21_noResampling.py' 2023-07-22T03:52:06,774 adding 'CartiMorph_nnUNet/inference/__init__.py' 2023-07-22T03:52:06,777 adding 'CartiMorph_nnUNet/inference/ensemble_predictions.py' 2023-07-22T03:52:06,788 adding 'CartiMorph_nnUNet/inference/predict.py' 2023-07-22T03:52:06,793 adding 'CartiMorph_nnUNet/inference/predict_simple.py' 2023-07-22T03:52:06,798 adding 'CartiMorph_nnUNet/inference/segmentation_export.py' 2023-07-22T03:52:06,801 adding 'CartiMorph_nnUNet/network_architecture/__init__.py' 2023-07-22T03:52:06,807 adding 'CartiMorph_nnUNet/network_architecture/generic_UNet.py' 2023-07-22T03:52:06,811 adding 'CartiMorph_nnUNet/network_architecture/generic_UNet_DP.py' 2023-07-22T03:52:06,816 adding 'CartiMorph_nnUNet/network_architecture/generic_modular_UNet.py' 2023-07-22T03:52:06,824 adding 'CartiMorph_nnUNet/network_architecture/generic_modular_preact_residual_UNet.py' 2023-07-22T03:52:06,831 adding 'CartiMorph_nnUNet/network_architecture/generic_modular_residual_UNet.py' 2023-07-22T03:52:06,834 adding 'CartiMorph_nnUNet/network_architecture/initialization.py' 2023-07-22T03:52:06,842 adding 'CartiMorph_nnUNet/network_architecture/neural_network.py' 2023-07-22T03:52:06,847 adding 'CartiMorph_nnUNet/network_architecture/custom_modules/__init__.py' 2023-07-22T03:52:06,850 adding 'CartiMorph_nnUNet/network_architecture/custom_modules/conv_blocks.py' 2023-07-22T03:52:06,853 adding 'CartiMorph_nnUNet/network_architecture/custom_modules/feature_response_normalization.py' 2023-07-22T03:52:06,856 adding 'CartiMorph_nnUNet/network_architecture/custom_modules/helperModules.py' 2023-07-22T03:52:06,858 adding 'CartiMorph_nnUNet/network_architecture/custom_modules/mish.py' 2023-07-22T03:52:06,862 adding 'CartiMorph_nnUNet/postprocessing/__init__.py' 2023-07-22T03:52:06,868 adding 'CartiMorph_nnUNet/postprocessing/connected_components.py' 2023-07-22T03:52:06,872 adding 'CartiMorph_nnUNet/postprocessing/consolidate_postprocessing.py' 2023-07-22T03:52:06,875 adding 'CartiMorph_nnUNet/preprocessing/__init__.py' 2023-07-22T03:52:06,879 adding 'CartiMorph_nnUNet/preprocessing/cropping.py' 2023-07-22T03:52:06,887 adding 'CartiMorph_nnUNet/preprocessing/preprocessing.py' 2023-07-22T03:52:06,893 adding 'CartiMorph_nnUNet/preprocessing/sanity_checks.py' 2023-07-22T03:52:06,897 adding 'CartiMorph_nnUNet/run/__init__.py' 2023-07-22T03:52:06,900 adding 'CartiMorph_nnUNet/run/default_configuration.py' 2023-07-22T03:52:06,903 adding 'CartiMorph_nnUNet/run/load_pretrained_weights.py' 2023-07-22T03:52:06,907 adding 'CartiMorph_nnUNet/run/run_training.py' 2023-07-22T03:52:06,911 adding 'CartiMorph_nnUNet/training/__init__.py' 2023-07-22T03:52:06,915 adding 'CartiMorph_nnUNet/training/model_restore.py' 2023-07-22T03:52:06,918 adding 'CartiMorph_nnUNet/training/cascade_stuff/__init__.py' 2023-07-22T03:52:06,922 adding 'CartiMorph_nnUNet/training/cascade_stuff/predict_next_stage.py' 2023-07-22T03:52:06,925 adding 'CartiMorph_nnUNet/training/data_augmentation/__init__.py' 2023-07-22T03:52:06,929 adding 'CartiMorph_nnUNet/training/data_augmentation/custom_transforms.py' 2023-07-22T03:52:06,933 adding 'CartiMorph_nnUNet/training/data_augmentation/data_augmentation_moreDA.py' 2023-07-22T03:52:06,937 adding 'CartiMorph_nnUNet/training/data_augmentation/default_data_augmentation.py' 2023-07-22T03:52:06,940 adding 'CartiMorph_nnUNet/training/data_augmentation/downsampling.py' 2023-07-22T03:52:06,944 adding 'CartiMorph_nnUNet/training/data_augmentation/pyramid_augmentations.py' 2023-07-22T03:52:06,947 adding 'CartiMorph_nnUNet/training/dataloading/__init__.py' 2023-07-22T03:52:06,955 adding 'CartiMorph_nnUNet/training/dataloading/dataset_loading.py' 2023-07-22T03:52:06,960 adding 'CartiMorph_nnUNet/training/learning_rate/__init__.py' 2023-07-22T03:52:06,962 adding 'CartiMorph_nnUNet/training/learning_rate/poly_lr.py' 2023-07-22T03:52:06,966 adding 'CartiMorph_nnUNet/training/loss_functions/TopK_loss.py' 2023-07-22T03:52:06,969 adding 'CartiMorph_nnUNet/training/loss_functions/__init__.py' 2023-07-22T03:52:06,971 adding 'CartiMorph_nnUNet/training/loss_functions/crossentropy.py' 2023-07-22T03:52:06,974 adding 'CartiMorph_nnUNet/training/loss_functions/deep_supervision.py' 2023-07-22T03:52:06,978 adding 'CartiMorph_nnUNet/training/loss_functions/dice_loss.py' 2023-07-22T03:52:06,982 adding 'CartiMorph_nnUNet/training/loss_functions/focal_loss.py' 2023-07-22T03:52:06,986 adding 'CartiMorph_nnUNet/training/network_training/__init__.py' 2023-07-22T03:52:06,995 adding 'CartiMorph_nnUNet/training/network_training/network_trainer.py' 2023-07-22T03:52:07,005 adding 'CartiMorph_nnUNet/training/network_training/nnUNetTrainer.py' 2023-07-22T03:52:07,011 adding 'CartiMorph_nnUNet/training/network_training/nnUNetTrainerCascadeFullRes.py' 2023-07-22T03:52:07,018 adding 'CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2.py' 2023-07-22T03:52:07,025 adding 'CartiMorph_nnUNet/training/network_training/nnUNetTrainerV2_CascadeFullRes.py' 2023-07-22T03:52:07,028 adding 'CartiMorph_nnUNet/training/optimizer/__init__.py' 2023-07-22T03:52:07,032 adding 'CartiMorph_nnUNet/training/optimizer/ranger.py' 2023-07-22T03:52:07,036 adding 'CartiMorph_nnUNet/utilities/__init__.py' 2023-07-22T03:52:07,038 adding 'CartiMorph_nnUNet/utilities/folder_names.py' 2023-07-22T03:52:07,041 adding 'CartiMorph_nnUNet/utilities/nd_softmax.py' 2023-07-22T03:52:07,043 adding 'CartiMorph_nnUNet/utilities/one_hot_encoding.py' 2023-07-22T03:52:07,046 adding 'CartiMorph_nnUNet/utilities/random_stuff.py' 2023-07-22T03:52:07,049 adding 'CartiMorph_nnUNet/utilities/set_n_proc_DA.py' 2023-07-22T03:52:07,051 adding 'CartiMorph_nnUNet/utilities/sitk_stuff.py' 2023-07-22T03:52:07,054 adding 'CartiMorph_nnUNet/utilities/task_name_id_conversion.py' 2023-07-22T03:52:07,056 adding 'CartiMorph_nnUNet/utilities/tensor_utilities.py' 2023-07-22T03:52:07,059 adding 'CartiMorph_nnUNet/utilities/to_torch.py' 2023-07-22T03:52:07,066 adding 'CartiMorph_nnUNet-1.7.14.dist-info/LICENSE' 2023-07-22T03:52:07,069 adding 'CartiMorph_nnUNet-1.7.14.dist-info/METADATA' 2023-07-22T03:52:07,071 adding 'CartiMorph_nnUNet-1.7.14.dist-info/WHEEL' 2023-07-22T03:52:07,073 adding 'CartiMorph_nnUNet-1.7.14.dist-info/entry_points.txt' 2023-07-22T03:52:07,075 adding 'CartiMorph_nnUNet-1.7.14.dist-info/top_level.txt' 2023-07-22T03:52:07,081 adding 'CartiMorph_nnUNet-1.7.14.dist-info/RECORD' 2023-07-22T03:52:07,097 removing build/bdist.linux-armv7l/wheel 2023-07-22T03:52:07,329 Building wheel for cartimorph-nnunet (setup.py): finished with status 'done' 2023-07-22T03:52:07,344 Created wheel for cartimorph-nnunet: filename=CartiMorph_nnUNet-1.7.14-py3-none-any.whl size=253398 sha256=975103e96f8abdaec6dec6b5e71f1827587d855732c8248e9faf702c788f3ec6 2023-07-22T03:52:07,346 Stored in directory: /tmp/pip-ephem-wheel-cache-9yl3eoda/wheels/17/47/db/e8b1d4357593f70b5c19c277aca4ecfdd6a4b648e499cf72d1 2023-07-22T03:52:07,384 Successfully built cartimorph-nnunet 2023-07-22T03:52:07,409 Removed build tracker: '/tmp/pip-build-tracker-znrpdt2b'