2023-07-25T18:15:52,422 Created temporary directory: /tmp/pip-build-tracker-q2sf0apd
2023-07-25T18:15:52,425 Initialized build tracking at /tmp/pip-build-tracker-q2sf0apd
2023-07-25T18:15:52,425 Created build tracker: /tmp/pip-build-tracker-q2sf0apd
2023-07-25T18:15:52,426 Entered build tracker: /tmp/pip-build-tracker-q2sf0apd
2023-07-25T18:15:52,427 Created temporary directory: /tmp/pip-wheel-xuw2rv5t
2023-07-25T18:15:52,435 Created temporary directory: /tmp/pip-ephem-wheel-cache-0onipaty
2023-07-25T18:15:52,488 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-07-25T18:15:52,496 2 location(s) to search for versions of bionetgen:
2023-07-25T18:15:52,496 * https://pypi.org/simple/bionetgen/
2023-07-25T18:15:52,496 * https://www.piwheels.org/simple/bionetgen/
2023-07-25T18:15:52,497 Fetching project page and analyzing links: https://pypi.org/simple/bionetgen/
2023-07-25T18:15:52,498 Getting page https://pypi.org/simple/bionetgen/
2023-07-25T18:15:52,502 Found index url https://pypi.org/simple/
2023-07-25T18:15:52,689 Fetched page https://pypi.org/simple/bionetgen/ as application/vnd.pypi.simple.v1+json
2023-07-25T18:15:52,730   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e6/b3/a893d46a588ca1612b6a59a6fafb21167eaa80126f5f03372bd14f44db1f/bionetgen-0.2.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,731   Found link https://files.pythonhosted.org/packages/8b/77/a1973826370f86755f3c754fd614079c30db123c2f3c84014426d43de1ab/bionetgen-0.2.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.2.7
2023-07-25T18:15:52,732   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/a8/9e/e58935cc85ce97feecf4795cd73318eda7cc19160570d679e8a69893d761/bionetgen-0.2.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,732   Found link https://files.pythonhosted.org/packages/60/97/da115de68d2cb06335a25ca27c1d0f51fb6995bfb0edecf703c7c9d566e2/bionetgen-0.2.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.2.9
2023-07-25T18:15:52,733   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/fd/58/eb48ea64b8add145ab85986be2d1f5cb803c157d96324326f4552c589d25/bionetgen-0.3.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,733   Found link https://files.pythonhosted.org/packages/4a/b9/b02e5302ce90ae25d31669953809f2f2dc89cfb6a7929bc630f322229080/bionetgen-0.3.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.0
2023-07-25T18:15:52,734   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/8d/02/a62cbc6b5b039fe62199dd264387be08c163bf3de4b6adc9ba596ef82bd8/bionetgen-0.3.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,735   Found link https://files.pythonhosted.org/packages/5f/1c/1265d1a89b35dee83def238b274a4650ef653b3a325c9399e0c7072bec94/bionetgen-0.3.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.1
2023-07-25T18:15:52,735   Found link https://files.pythonhosted.org/packages/bc/0a/12b0cc2800c6027302f8b21d31a8909a7c06000f5ce4d9e73288fd9cc442/bionetgen-0.3.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.2
2023-07-25T18:15:52,736   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/10/70/f78c30f58893583b15e305d4d5f575998b8aa1b0d8bddd50c40bc20d4c72/bionetgen-0.3.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,737   Found link https://files.pythonhosted.org/packages/1f/9b/9489a0427b6fa0dcebfc86cb8b97d1e6803102baa0fefd533b0ccd97489c/bionetgen-0.3.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.3
2023-07-25T18:15:52,737   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/88/39/cfe6e91621c8eb0ca89d3c3c18f58a638b96edbcd66b18cdd3c3329d4459/bionetgen-0.3.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,738   Found link https://files.pythonhosted.org/packages/57/eb/855cb6b223f38bc06c320c14271cfa488e8f5582efc8b18d7d544d707822/bionetgen-0.3.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.4
2023-07-25T18:15:52,739   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3f/44/002d294451ca19921ad37f4b240620ad6ec699a3e13e980d80675a8c4faf/bionetgen-0.3.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,739   Found link https://files.pythonhosted.org/packages/d1/a2/52c81f4a2d37efcde57207ce623f38304972421ffdd4596a196816e1a2f2/bionetgen-0.3.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.5
2023-07-25T18:15:52,740   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/96/0f/2c3b6d03dc5814093bd899957a3b62606cd17b984e8e59f576fcad6596f4/bionetgen-0.3.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,740   Found link https://files.pythonhosted.org/packages/da/ae/cad793910aefa7820df164f2f98d73358c29e3cec6c4e71462cadf2447bb/bionetgen-0.3.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.7
2023-07-25T18:15:52,741   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/17/74/1c26bb9b930f829068ee42bc4d2442f93a9e3a76ebbc7d3d597d60bd9740/bionetgen-0.3.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,742   Found link https://files.pythonhosted.org/packages/c0/92/b7500051998b3edb5f2d95edecdbcea753552fd820009f6783b050cab687/bionetgen-0.3.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.8
2023-07-25T18:15:52,742   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/56/dd/090c573b908095d993c9aa5950a9b159fb212fae38e883f9b1a0ac196d4a/bionetgen-0.3.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,743   Found link https://files.pythonhosted.org/packages/b2/7c/b24930fdf77b18acde646de235225fe9a514423e86259ea00bd058c1f042/bionetgen-0.3.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.9
2023-07-25T18:15:52,743   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/15/44/132c8c88f5960ce1c3221f9f6c1d4fb33a0fb65a11f7b5446d146f4ea5a4/bionetgen-0.4.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,744   Found link https://files.pythonhosted.org/packages/94/e8/0645b78778349e6e6c16db375db8c525b1955335f7d1ef596dbae0ea1699/bionetgen-0.4.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.0
2023-07-25T18:15:52,745   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/ee/30/387ec7efdcf880dd53cda89fb190781699106d5b879bdbd5a3b02581faf2/bionetgen-0.4.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,745   Found link https://files.pythonhosted.org/packages/62/d2/d5bf0bc0b9a4190c1910191c0b9a5e37d84bae9f02151e051f3ff499fba5/bionetgen-0.4.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.1
2023-07-25T18:15:52,746   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/81/d4/79f2d2a12bffb285e4f997950d06ee110b5f3bc27429927feb15ebe80171/bionetgen-0.4.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,746   Found link https://files.pythonhosted.org/packages/04/64/a0ae32a6426834a017a74389de629a1c5031221a173f7d6b46f239818ae6/bionetgen-0.4.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.2
2023-07-25T18:15:52,747   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e9/99/aefc24dbffd1b1a4c3ed22195566a4ae72097b3768acfc03b4d0770580c5/bionetgen-0.4.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,747   Found link https://files.pythonhosted.org/packages/e9/ce/ca95b1ebad09c1773bdc1c56143b419a71bed8cf54c245baf7a2a75876b1/bionetgen-0.4.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.3
2023-07-25T18:15:52,748   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/cd/89/1967b9731f3eb80ca652c6940a7e81d42c3efef15e6ee58ddcb98dd55fa8/bionetgen-0.4.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,749   Found link https://files.pythonhosted.org/packages/9b/a3/bd276dc1574ca60bc312570909df86b0466f4e5d3408b63a38e05403f2f2/bionetgen-0.4.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.4
2023-07-25T18:15:52,749   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/b0/b3/93a6053a7574695e325daf76f182bfd6d53a0eea4e231fd6466e2716cabc/bionetgen-0.4.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,750   Found link https://files.pythonhosted.org/packages/aa/60/b4fba06e15f07edfd93184fa6f448008163f6488d77ae6dd7ff03412c51b/bionetgen-0.4.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.5
2023-07-25T18:15:52,751   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/20/3a/892d36557a3542ec72ebfe27cc3e0ec5fc239093c808b26d9946bbac45a8/bionetgen-0.4.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,751   Found link https://files.pythonhosted.org/packages/eb/c4/f214b38bb066528f18bdca03a7cb5a87689a1c847741db288e4c58b0d6e1/bionetgen-0.4.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.6
2023-07-25T18:15:52,752   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/7a/30/8ad58742429beca1ff92cc4837271beafd3c64f04914e78be76924a611b5/bionetgen-0.4.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,752   Found link https://files.pythonhosted.org/packages/72/13/7d564b2d4e26b0ec8a2aabc5389b4a7250cf90f862d1e0b5625ff4ffb5d6/bionetgen-0.4.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.7
2023-07-25T18:15:52,753   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/9f/5b/f8201d39e1848e21a572f965641180ebbb7666f44277c2a7abda36413bbf/bionetgen-0.4.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,753   Found link https://files.pythonhosted.org/packages/8b/5d/582060cd4441f40df5c4a64ff15d47b0f920ca3ddd5200cb9a32f9b6dab8/bionetgen-0.4.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.9
2023-07-25T18:15:52,754   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/54/13/93321ca08c364aebe604a692d6d7a47f373689fb16494654af8646321ec2/bionetgen-0.5.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,755   Found link https://files.pythonhosted.org/packages/93/d2/260c4e0abc5322872769578be15df290059ded1787f2cea48b689073d484/bionetgen-0.5.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.0
2023-07-25T18:15:52,755   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3a/77/3418b3c243701669785563a54eb9db56af6c03fc7a83abba87a7dfab2931/bionetgen-0.5.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,756   Found link https://files.pythonhosted.org/packages/4c/f0/0db11d911ca3e38720e5b6d872066c598460f5678376972e3593c68243b8/bionetgen-0.5.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.1
2023-07-25T18:15:52,756   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/a3/b2/ddb74a7f7ecee97aafabeeb8ab7d41d4af1d68b39fae641b03ef9cea5a96/bionetgen-0.5.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,757   Found link https://files.pythonhosted.org/packages/7d/53/b3a1d665d18f511a7cf86421e910fa91deaac023b11e75f2a8a1c32b464a/bionetgen-0.5.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.2
2023-07-25T18:15:52,758   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e8/e2/848deecac8ecb2565313b309a9ac4a14a209e64c9a6c89c3181cb85ef143/bionetgen-0.5.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,758   Found link https://files.pythonhosted.org/packages/70/44/07950150920c76149dad62ff99027fe67bb13e08ef11754c6be8997d752f/bionetgen-0.5.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.3
2023-07-25T18:15:52,759   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/7c/a4/fb5e9dc0a723d7d19fd6baa3bb8d3a79b74bbe9b7cd7e7daea7ed74e7ad8/bionetgen-0.5.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,759   Found link https://files.pythonhosted.org/packages/a2/41/06462bb4718e471413356973eef816f15fa84463affcaec3c9c882f2e844/bionetgen-0.5.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.4
2023-07-25T18:15:52,760   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/dd/ff/db5c2ed4c02db6b677682a92419a0fc6b9a281d766e00f8ba18b01bfdedd/bionetgen-0.5.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,761   Found link https://files.pythonhosted.org/packages/99/a6/dbea265d5bad01626c8fafdb1c7b34abbe2bfdbce697116346c7e05be206/bionetgen-0.5.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.5
2023-07-25T18:15:52,761   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/0d/09/96950b046f8acbf08f71b08f107a7b060858867ca74ae2cb208aba504649/bionetgen-0.5.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,762   Found link https://files.pythonhosted.org/packages/c4/48/9067dd4bcf799ed37562124658290f8bccbd2b94a54498ca8ab2be89ae4e/bionetgen-0.5.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.6
2023-07-25T18:15:52,763   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/47/3a/fc7fffda69e350e900917813c956941c697096ca54d12868b3f7e9d6e1e6/bionetgen-0.5.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,763   Found link https://files.pythonhosted.org/packages/81/b0/b572a13c97bcfc904c656837e61614e1b018e2bc8e4ebec7155e2df2ad0d/bionetgen-0.5.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.7
2023-07-25T18:15:52,764   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/bd/82/9d96eaa801581c1c19d40fdaa80136ac543e6765bea7eb775742239130e6/bionetgen-0.5.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,764   Found link https://files.pythonhosted.org/packages/a1/2e/ea071ba50159f84544916161cc35d432a8b1b609c6a70c37f5f900d0075a/bionetgen-0.5.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.8
2023-07-25T18:15:52,765   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/60/a1/ebcf584d1fb40fdebfaefe8a73f582f8752c1e70aa53242c7663548b88e5/bionetgen-0.5.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,766   Found link https://files.pythonhosted.org/packages/f3/2e/6d2741c35609abc2c1ff257775a8e691e52c8a050a737fc20bf2c46ec2f7/bionetgen-0.5.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.9
2023-07-25T18:15:52,766   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/d5/98/5b2d3c72e76bf01f7ed0e6d900831deda233bc534fbe62d9369dd56ecb4b/bionetgen-0.6.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,767   Found link https://files.pythonhosted.org/packages/3c/0a/5b9ca15324bccb719922a7ad179c87b1ef6cf80ba4d4a53ddce2ee20ccd8/bionetgen-0.6.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.0
2023-07-25T18:15:52,767   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/89/21/11d94b32c433fa2c0fcfe1e1813cbc3194ac724ae9453118674d7a76aae8/bionetgen-0.6.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,768   Found link https://files.pythonhosted.org/packages/57/96/9afd7e6fd8a38dfae0b71563e4a1c64a7b2281364d0e216746026b0b0a97/bionetgen-0.6.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.1
2023-07-25T18:15:52,769   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f2/a1/e0c4f5d41c5df4c40bcc78b178d4e46fecbb944eb0e8017ad01deec1f290/bionetgen-0.6.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,769   Found link https://files.pythonhosted.org/packages/38/07/171434cc308be745cb011476b4cb92ee86f26dd55502b3eb05986d9cf474/bionetgen-0.6.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.2
2023-07-25T18:15:52,770   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/14/96/c88b0ee82fe35836ed6bde1bd400476e44fb01927e4326d5231326bb8460/bionetgen-0.7.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,770   Found link https://files.pythonhosted.org/packages/c1/72/8d3b7365a54791c3e141066c6c627788a5426ad8716f19071dcc02a4b576/bionetgen-0.7.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.0
2023-07-25T18:15:52,771   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/c9/32/18786448b30d20628937555e27ed9256d87b365732ac2aadd4ef2af4547c/bionetgen-0.7.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,772   Found link https://files.pythonhosted.org/packages/69/3d/003c54c5f11e6a7a1468399fb9f2feaba8379461f8a7ab3a68ba287a8216/bionetgen-0.7.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.2
2023-07-25T18:15:52,772   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/1c/50/d7d1d60c01d714bfbd70d513f895e85477ca2659455f98a2581e91b85029/bionetgen-0.7.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,773   Found link https://files.pythonhosted.org/packages/2e/33/74910edea6ba1c79332710d5be1e720550ad6ff928c95d52a034166c8e6d/bionetgen-0.7.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.3
2023-07-25T18:15:52,773   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f3/93/c9d95072013866fa911ffd7e380dde1ff196844d422c720bc2cf9ebb43a2/bionetgen-0.7.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,774   Found link https://files.pythonhosted.org/packages/b4/0f/1ab0c5f86952c7272c9c9d0d216e5065182407e2eec897190b4ac2c1fe6e/bionetgen-0.7.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.4
2023-07-25T18:15:52,775   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/81/21/0b46f621d7d53d65b7f4b0b9eacd234bd6d8647c3d36f052ba9edd4648e8/bionetgen-0.7.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,775   Found link https://files.pythonhosted.org/packages/3e/37/9665cc48735cee43249ef7e91337c1381b48021edce9819e0bb61238f0c7/bionetgen-0.7.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.5
2023-07-25T18:15:52,776   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3f/f1/48b4ab9227841b75a330a7458e2d926626b55529413da4f1ca1b695d1008/bionetgen-0.7.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,776   Found link https://files.pythonhosted.org/packages/d4/c2/051f5d6fcb049e83907642eee8aed23e00ae28847b9d0df56bcca1272e5e/bionetgen-0.7.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.6
2023-07-25T18:15:52,777   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/5f/a1/b2d435566685eed5d1fdc9e496523adae6ddc8febf4b3717d2ca8d64cd1e/bionetgen-0.7.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,777   Found link https://files.pythonhosted.org/packages/4f/4a/d6169577fda44126a077cb84f4c9bf988fa006148705aac87124d9b816ff/bionetgen-0.7.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.7
2023-07-25T18:15:52,778   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e4/0b/241722c296042ce1f269ea525e66cf3a61fed88e2c00848aafa663015422/bionetgen-0.7.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,779   Found link https://files.pythonhosted.org/packages/fb/ea/3af479ef041ee5501a88dea3a3749e1de0b1cf376444a50c0ec561d833f6/bionetgen-0.7.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.8
2023-07-25T18:15:52,779   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f2/e1/12113d90c0acfd3c257dc9d4b133152e47628d3514e4412ef951a1cc9e17/bionetgen-0.7.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,780   Found link https://files.pythonhosted.org/packages/93/f4/23d7e296735bc5b5e4149d1c7167809d68cb669965351d441d6bac6f4bed/bionetgen-0.7.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.9
2023-07-25T18:15:52,780   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/5f/80/922003cc48c2eaa32a0722102667ac51a5e89216c507a1dbeaafd83120dc/bionetgen-0.8.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,781   Found link https://files.pythonhosted.org/packages/4d/1e/32dd08837b4a182b364a9d961d7a36dbd953eb68f98600c3b93fe8d1b9ca/bionetgen-0.8.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.8.0
2023-07-25T18:15:52,782   Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3e/53/0ac1b407d5c5f5f2ec96b01b61be58d0a1199b903fcc4285795ace19fb60/bionetgen-0.8.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,782   Found link https://files.pythonhosted.org/packages/01/4b/bb43588c02bd3fa4ca37d11500043b13d5e70c09c94679fdbf920fc4fc3e/bionetgen-0.8.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.8.1
2023-07-25T18:15:52,783 Fetching project page and analyzing links: https://www.piwheels.org/simple/bionetgen/
2023-07-25T18:15:52,784 Getting page https://www.piwheels.org/simple/bionetgen/
2023-07-25T18:15:52,786 Found index url https://www.piwheels.org/simple/
2023-07-25T18:15:53,052 Fetched page https://www.piwheels.org/simple/bionetgen/ as text/html
2023-07-25T18:15:53,060   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.8.0-py3-none-any.whl#sha256=1892489ca2c73760c8a88d4651fefe6bfa9f0d2174d8376cfee881268b0b4d3d (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,060   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.5-py3-none-any.whl#sha256=a940a7f8be7f8b9f9208d837c2530709df723e59fdce7f729104b124537048ef (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,061   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.4-py3-none-any.whl#sha256=1363d4463b7d016634f411e5714484ab005566c6194146f8e28389fa80d6bd8e (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,062   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.3-py3-none-any.whl#sha256=6406b457ade36823c9ed9f97e2ef2f80c0cd78826b28346f869cff7726c0ce14 (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,062   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.1-py3-none-any.whl#sha256=fca4945c5fdf63233bc2923b1ce64c4e6069f15abb0581f7016aab3e31a99040 (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,062   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.0-py3-none-any.whl#sha256=6edb99b707a5cfd75433f906e9d28f809e31110074fc71c3d5d0422be4ba5df2 (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,063   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.2.9-py3-none-any.whl#sha256=22fc780a6e557c20a3e8bbe6192ef53fdec8ea5376bc17125dae1b50a1efec1d (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,063   Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.2.7-py3-none-any.whl#sha256=ce9ef4a22cdb47a02688c4e132e24be6b66f4ffd3594b44ed0746df961106db1 (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,064 Skipping link: not a file: https://www.piwheels.org/simple/bionetgen/
2023-07-25T18:15:53,065 Skipping link: not a file: https://pypi.org/simple/bionetgen/
2023-07-25T18:15:53,116 Given no hashes to check 1 links for project 'bionetgen': discarding no candidates
2023-07-25T18:15:53,148 Collecting bionetgen==0.8.1
2023-07-25T18:15:53,152   Created temporary directory: /tmp/pip-unpack-izhkb_ew
2023-07-25T18:15:53,348   Downloading bionetgen-0.8.1.tar.gz (11.0 MB)
2023-07-25T18:16:01,939   Added bionetgen==0.8.1 from https://files.pythonhosted.org/packages/01/4b/bb43588c02bd3fa4ca37d11500043b13d5e70c09c94679fdbf920fc4fc3e/bionetgen-0.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-q2sf0apd'
2023-07-25T18:16:01,942   Running setup.py (path:/tmp/pip-wheel-xuw2rv5t/bionetgen_6c83726988e745f996c6b437f9910893/setup.py) egg_info for package bionetgen
2023-07-25T18:16:01,944   Created temporary directory: /tmp/pip-pip-egg-info-4yuw0wnk
2023-07-25T18:16:01,944   Preparing metadata (setup.py): started
2023-07-25T18:16:01,946   Running command python setup.py egg_info
2023-07-25T18:16:05,759   Defaulting to user installation because normal site-packages is not writeable
2023-07-25T18:16:06,590   Requirement already satisfied: numpy in /usr/local/lib/python3.7/dist-packages (1.21.4)

2023-07-25T18:16:11,748   [notice] A new release of pip is available: 23.1.2 -> 23.2
2023-07-25T18:16:11,749   [notice] To update, run: python3 -m pip install --upgrade pip
2023-07-25T18:17:23,612   running egg_info
2023-07-25T18:17:23,618   creating /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info
2023-07-25T18:17:23,695   writing /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/PKG-INFO
2023-07-25T18:17:23,702   writing dependency_links to /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/dependency_links.txt
2023-07-25T18:17:23,706   writing entry points to /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/entry_points.txt
2023-07-25T18:17:23,709   writing requirements to /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/requires.txt
2023-07-25T18:17:23,712   writing top-level names to /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/top_level.txt
2023-07-25T18:17:23,716   writing manifest file '/tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:17:23,987   reading manifest file '/tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:17:23,991   reading manifest template 'MANIFEST.in'
2023-07-25T18:17:23,994   warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2023-07-25T18:17:23,995   warning: manifest_maker: MANIFEST.in, line 2: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2023-07-25T18:17:24,234   adding license file 'LICENSE'
2023-07-25T18:17:24,272   writing manifest file '/tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:17:24,412   Preparing metadata (setup.py): finished with status 'done'
2023-07-25T18:17:24,425   Source in /tmp/pip-wheel-xuw2rv5t/bionetgen_6c83726988e745f996c6b437f9910893 has version 0.8.1, which satisfies requirement bionetgen==0.8.1 from https://files.pythonhosted.org/packages/01/4b/bb43588c02bd3fa4ca37d11500043b13d5e70c09c94679fdbf920fc4fc3e/bionetgen-0.8.1.tar.gz
2023-07-25T18:17:24,427   Removed bionetgen==0.8.1 from https://files.pythonhosted.org/packages/01/4b/bb43588c02bd3fa4ca37d11500043b13d5e70c09c94679fdbf920fc4fc3e/bionetgen-0.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-q2sf0apd'
2023-07-25T18:17:24,439 Created temporary directory: /tmp/pip-unpack-6aa46qnv
2023-07-25T18:17:24,440 Building wheels for collected packages: bionetgen
2023-07-25T18:17:24,449   Created temporary directory: /tmp/pip-wheel-0_afdub5
2023-07-25T18:17:24,450   Building wheel for bionetgen (setup.py): started
2023-07-25T18:17:24,452   Destination directory: /tmp/pip-wheel-0_afdub5
2023-07-25T18:17:24,452   Running command python setup.py bdist_wheel
2023-07-25T18:17:28,453   Defaulting to user installation because normal site-packages is not writeable
2023-07-25T18:17:29,358   Requirement already satisfied: numpy in /usr/local/lib/python3.7/dist-packages (1.21.4)

2023-07-25T18:17:34,566   [notice] A new release of pip is available: 23.1.2 -> 23.2
2023-07-25T18:17:34,567   [notice] To update, run: python3 -m pip install --upgrade pip
2023-07-25T18:18:46,326   running bdist_wheel
2023-07-25T18:18:47,164   running build
2023-07-25T18:18:47,165   running build_py
2023-07-25T18:18:47,250   creating build
2023-07-25T18:18:47,251   creating build/lib
2023-07-25T18:18:47,252   creating build/lib/bionetgen
2023-07-25T18:18:47,254   copying bionetgen/main.py -> build/lib/bionetgen
2023-07-25T18:18:47,259   copying bionetgen/__init__.py -> build/lib/bionetgen
2023-07-25T18:18:47,264   creating build/lib/bionetgen/network
2023-07-25T18:18:47,266   copying bionetgen/network/structs.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,271   copying bionetgen/network/__init__.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,275   copying bionetgen/network/network.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,279   copying bionetgen/network/blocks.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,284   copying bionetgen/network/networkparser.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,290   creating build/lib/bionetgen/modelapi
2023-07-25T18:18:47,292   copying bionetgen/modelapi/structs.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,297   copying bionetgen/modelapi/__init__.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,301   copying bionetgen/modelapi/bngparser.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,306   copying bionetgen/modelapi/pattern_reader.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,311   copying bionetgen/modelapi/xmlparsers.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,317   copying bionetgen/modelapi/runner.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,320   copying bionetgen/modelapi/blocks.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,326   copying bionetgen/modelapi/model.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,331   copying bionetgen/modelapi/bngfile.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,335   copying bionetgen/modelapi/pattern.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,340   copying bionetgen/modelapi/rulemod.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,345   creating build/lib/bionetgen/simulator
2023-07-25T18:18:47,347   copying bionetgen/simulator/__init__.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,351   copying bionetgen/simulator/csimulator.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,355   copying bionetgen/simulator/bngsimulator.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,359   copying bionetgen/simulator/simulators.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,363   copying bionetgen/simulator/librrsimulator.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,369   creating build/lib/bionetgen/atomizer
2023-07-25T18:18:47,371   copying bionetgen/atomizer/libsbml2bngl.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,380   copying bionetgen/atomizer/contextAnalyzer.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,385   copying bionetgen/atomizer/__init__.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,388   copying bionetgen/atomizer/sbmlTranslator.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,393   copying bionetgen/atomizer/contactMap.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,398   copying bionetgen/atomizer/bngModel.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,406   copying bionetgen/atomizer/parseAnnotation.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,410   copying bionetgen/atomizer/sbml2json.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,415   copying bionetgen/atomizer/sbml2bngl.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,429   copying bionetgen/atomizer/biogrid.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,433   copying bionetgen/atomizer/atomizeTool.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,439   creating build/lib/bionetgen/core
2023-07-25T18:18:47,441   copying bionetgen/core/notebook.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,445   copying bionetgen/core/main.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,450   copying bionetgen/core/exc.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,454   copying bionetgen/core/version.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,457   copying bionetgen/core/__init__.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,460   copying bionetgen/core/defaults.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,466   creating build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,467   copying bionetgen/atomizer/utils/annotationExtender.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,472   copying bionetgen/atomizer/utils/__init__.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,475   copying bionetgen/atomizer/utils/annotationDeletion.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,480   copying bionetgen/atomizer/utils/modelComparison.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,484   copying bionetgen/atomizer/utils/util.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,489   copying bionetgen/atomizer/utils/consoleCommands.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,492   copying bionetgen/atomizer/utils/structures.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,498   copying bionetgen/atomizer/utils/readBNGXML.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,503   copying bionetgen/atomizer/utils/extractAtomic.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,507   copying bionetgen/atomizer/utils/nameNormalizer.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,511   copying bionetgen/atomizer/utils/annotationResolver.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,515   copying bionetgen/atomizer/utils/annotationComparison.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,519   copying bionetgen/atomizer/utils/annotationExtractor.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,524   copying bionetgen/atomizer/utils/pathwaycommons.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,529   copying bionetgen/atomizer/utils/smallStructures.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,536   creating build/lib/bionetgen/atomizer/merging
2023-07-25T18:18:47,538   copying bionetgen/atomizer/merging/namingDatabase.py -> build/lib/bionetgen/atomizer/merging
2023-07-25T18:18:47,543   copying bionetgen/atomizer/merging/__init__.py -> build/lib/bionetgen/atomizer/merging
2023-07-25T18:18:47,546   copying bionetgen/atomizer/merging/compareNamingConventions.py -> build/lib/bionetgen/atomizer/merging
2023-07-25T18:18:47,551   creating build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,552   copying bionetgen/atomizer/atomizer/__init__.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,556   copying bionetgen/atomizer/atomizer/analyzeSBML.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,566   copying bionetgen/atomizer/atomizer/analyzeRDF.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,570   copying bionetgen/atomizer/atomizer/detectOntology.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,575   copying bionetgen/atomizer/atomizer/atomizationAux.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,580   copying bionetgen/atomizer/atomizer/moleculeCreation.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,588   copying bionetgen/atomizer/atomizer/atomizerUtils.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,592   copying bionetgen/atomizer/atomizer/resolveSCT.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,603   creating build/lib/bionetgen/atomizer/writer
2023-07-25T18:18:47,605   copying bionetgen/atomizer/writer/__init__.py -> build/lib/bionetgen/atomizer/writer
2023-07-25T18:18:47,608   copying bionetgen/atomizer/writer/bnglWriter.py -> build/lib/bionetgen/atomizer/writer
2023-07-25T18:18:47,615   creating build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,617   copying bionetgen/atomizer/rulifier/__init__.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,620   copying bionetgen/atomizer/rulifier/componentGroups.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,626   copying bionetgen/atomizer/rulifier/compareModels.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,630   copying bionetgen/atomizer/rulifier/stateTransitionDiagram.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,635   copying bionetgen/atomizer/rulifier/stdgraph.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,639   copying bionetgen/atomizer/rulifier/parameterExtraction.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,644   copying bionetgen/atomizer/rulifier/postAnalysis.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,650   copying bionetgen/atomizer/rulifier/arial10.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,655   creating build/lib/bionetgen/core/utils
2023-07-25T18:18:47,657   copying bionetgen/core/utils/logging.py -> build/lib/bionetgen/core/utils
2023-07-25T18:18:47,662   copying bionetgen/core/utils/__init__.py -> build/lib/bionetgen/core/utils
2023-07-25T18:18:47,665   copying bionetgen/core/utils/utils.py -> build/lib/bionetgen/core/utils
2023-07-25T18:18:47,672   creating build/lib/bionetgen/core/tools
2023-07-25T18:18:47,674   copying bionetgen/core/tools/gdiff.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,679   copying bionetgen/core/tools/visualize.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,684   copying bionetgen/core/tools/__init__.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,688   copying bionetgen/core/tools/plot.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,691   copying bionetgen/core/tools/info.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,696   copying bionetgen/core/tools/cli.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,700   copying bionetgen/core/tools/result.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,704   running egg_info
2023-07-25T18:18:47,878   writing bionetgen.egg-info/PKG-INFO
2023-07-25T18:18:47,882   writing dependency_links to bionetgen.egg-info/dependency_links.txt
2023-07-25T18:18:47,886   writing entry points to bionetgen.egg-info/entry_points.txt
2023-07-25T18:18:47,889   writing requirements to bionetgen.egg-info/requires.txt
2023-07-25T18:18:47,892   writing top-level names to bionetgen.egg-info/top_level.txt
2023-07-25T18:18:48,009   reading manifest file 'bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:18:48,108   reading manifest template 'MANIFEST.in'
2023-07-25T18:18:48,110   warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2023-07-25T18:18:48,111   warning: manifest_maker: MANIFEST.in, line 2: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

2023-07-25T18:18:48,357   adding license file 'LICENSE'
2023-07-25T18:18:48,409   writing manifest file 'bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:18:48,416   /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'bionetgen.assets' is absent from the `packages` configuration.
2023-07-25T18:18:48,417   !!

2023-07-25T18:18:48,417           ********************************************************************************
2023-07-25T18:18:48,418           ############################
2023-07-25T18:18:48,418           # Package would be ignored #
2023-07-25T18:18:48,418           ############################
2023-07-25T18:18:48,418           Python recognizes 'bionetgen.assets' as an importable package[^1],
2023-07-25T18:18:48,419           but it is absent from setuptools' `packages` configuration.

2023-07-25T18:18:48,419           This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-25T18:18:48,420           package, please make sure that 'bionetgen.assets' is explicitly added
2023-07-25T18:18:48,420           to the `packages` configuration field.

2023-07-25T18:18:48,421           Alternatively, you can also rely on setuptools' discovery methods
2023-07-25T18:18:48,421           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-25T18:18:48,421           instead of `find_packages(...)`/`find:`).

2023-07-25T18:18:48,422           You can read more about "package discovery" on setuptools documentation page:

2023-07-25T18:18:48,423           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-07-25T18:18:48,423           If you don't want 'bionetgen.assets' to be distributed and are
2023-07-25T18:18:48,423           already explicitly excluding 'bionetgen.assets' via
2023-07-25T18:18:48,424           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-25T18:18:48,424           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-25T18:18:48,424           combination with a more fine grained `package-data` configuration.

2023-07-25T18:18:48,425           You can read more about "package data files" on setuptools documentation page:

2023-07-25T18:18:48,426           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-07-25T18:18:48,427           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-25T18:18:48,427                 even if it does not contain any `.py` files.
2023-07-25T18:18:48,427                 On the other hand, currently there is no concept of package data
2023-07-25T18:18:48,428                 directory, all directories are treated like packages.
2023-07-25T18:18:48,428           ********************************************************************************

2023-07-25T18:18:48,428   !!
2023-07-25T18:18:48,429     check.warn(importable)
2023-07-25T18:18:48,530   creating build/lib/bionetgen/assets
2023-07-25T18:18:48,532   copying bionetgen/assets/BNGVERSION -> build/lib/bionetgen/assets
2023-07-25T18:18:48,536   copying bionetgen/assets/VERSION -> build/lib/bionetgen/assets
2023-07-25T18:18:48,540   copying bionetgen/assets/bionetgen-temp.ipynb -> build/lib/bionetgen/assets
2023-07-25T18:18:48,546   copying bionetgen/assets/bionetgen.ipynb -> build/lib/bionetgen/assets
2023-07-25T18:18:48,552   copying bionetgen/assets/get_version_json.py -> build/lib/bionetgen/assets
2023-07-25T18:18:48,557   copying bionetgen/assets/ghapi.json -> build/lib/bionetgen/assets
2023-07-25T18:18:48,562   creating build/lib/bionetgen/bng-linux
2023-07-25T18:18:48,563   copying bionetgen/bng-linux/BNG2.pl -> build/lib/bionetgen/bng-linux
2023-07-25T18:18:48,570   copying bionetgen/bng-linux/VERSION -> build/lib/bionetgen/bng-linux
2023-07-25T18:18:48,576   creating build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,577   copying bionetgen/bng-linux/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,587   copying bionetgen/bng-linux/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,592   copying bionetgen/bng-linux/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,602   copying bionetgen/bng-linux/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,607   copying bionetgen/bng-linux/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,619   copying bionetgen/bng-linux/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,625   copying bionetgen/bng-linux/Perl2/Cache.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,629   copying bionetgen/bng-linux/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,634   copying bionetgen/bng-linux/Perl2/Compartment.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,639   copying bionetgen/bng-linux/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,645   copying bionetgen/bng-linux/Perl2/Component.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,651   copying bionetgen/bng-linux/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,656   copying bionetgen/bng-linux/Perl2/Console.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,661   copying bionetgen/bng-linux/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,667   copying bionetgen/bng-linux/Perl2/Expression.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,676   copying bionetgen/bng-linux/Perl2/Function.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,681   copying bionetgen/bng-linux/Perl2/HNauty.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,687   copying bionetgen/bng-linux/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,691   copying bionetgen/bng-linux/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,701   copying bionetgen/bng-linux/Perl2/Map.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,705   copying bionetgen/bng-linux/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,709   copying bionetgen/bng-linux/Perl2/Molecule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,715   copying bionetgen/bng-linux/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,721   copying bionetgen/bng-linux/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,726   copying bionetgen/bng-linux/Perl2/Observable.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,731   copying bionetgen/bng-linux/Perl2/Param.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,736   copying bionetgen/bng-linux/Perl2/ParamList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,742   copying bionetgen/bng-linux/Perl2/Population.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,746   copying bionetgen/bng-linux/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,750   copying bionetgen/bng-linux/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,757   copying bionetgen/bng-linux/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,764   copying bionetgen/bng-linux/Perl2/Rxn.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,769   copying bionetgen/bng-linux/Perl2/RxnList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,775   copying bionetgen/bng-linux/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,786   copying bionetgen/bng-linux/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,792   copying bionetgen/bng-linux/Perl2/Species.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,797   copying bionetgen/bng-linux/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,807   copying bionetgen/bng-linux/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,813   copying bionetgen/bng-linux/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,817   copying bionetgen/bng-linux/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,823   copying bionetgen/bng-linux/Perl2/diff_net.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,828   copying bionetgen/bng-linux/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,834   copying bionetgen/bng-linux/Perl2/scan_var.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,839   copying bionetgen/bng-linux/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,844   copying bionetgen/bng-linux/Perl2/verify.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,850   creating build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,853   copying bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,857   copying bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,861   copying bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,865   copying bionetgen/bng-linux/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,869   copying bionetgen/bng-linux/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,873   copying bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,877   copying bionetgen/bng-linux/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,881   copying bionetgen/bng-linux/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,885   copying bionetgen/bng-linux/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,888   copying bionetgen/bng-linux/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,893   copying bionetgen/bng-linux/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,896   copying bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,900   copying bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,904   copying bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,908   copying bionetgen/bng-linux/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,912   creating build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,914   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,918   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,922   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,926   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,930   copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,934   creating build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,936   copying bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,940   copying bionetgen/bng-linux/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,948   copying bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,954   copying bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,959   copying bionetgen/bng-linux/Perl2/Visualization/README -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,963   copying bionetgen/bng-linux/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,967   copying bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,972   copying bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,976   copying bionetgen/bng-linux/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,984   copying bionetgen/bng-linux/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,989   copying bionetgen/bng-linux/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,993   copying bionetgen/bng-linux/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,998   creating build/lib/bionetgen/bng-linux/Perl2/XML
2023-07-25T18:18:48,999   copying bionetgen/bng-linux/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-linux/Perl2/XML
2023-07-25T18:18:49,006   creating build/lib/bionetgen/bng-linux/bin
2023-07-25T18:18:49,007   copying bionetgen/bng-linux/bin/NFsim -> build/lib/bionetgen/bng-linux/bin
2023-07-25T18:18:49,157   copying bionetgen/bng-linux/bin/run_network -> build/lib/bionetgen/bng-linux/bin
2023-07-25T18:18:49,304   copying bionetgen/bng-linux/bin/sundials-config -> build/lib/bionetgen/bng-linux/bin
2023-07-25T18:18:49,309   creating build/lib/bionetgen/bng-mac
2023-07-25T18:18:49,310   copying bionetgen/bng-mac/BNG2.pl -> build/lib/bionetgen/bng-mac
2023-07-25T18:18:49,316   copying bionetgen/bng-mac/VERSION -> build/lib/bionetgen/bng-mac
2023-07-25T18:18:49,321   creating build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,322   copying bionetgen/bng-mac/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,331   copying bionetgen/bng-mac/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,335   copying bionetgen/bng-mac/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,344   copying bionetgen/bng-mac/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,348   copying bionetgen/bng-mac/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,360   copying bionetgen/bng-mac/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,365   copying bionetgen/bng-mac/Perl2/Cache.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,369   copying bionetgen/bng-mac/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,374   copying bionetgen/bng-mac/Perl2/Compartment.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,379   copying bionetgen/bng-mac/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,383   copying bionetgen/bng-mac/Perl2/Component.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,389   copying bionetgen/bng-mac/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,393   copying bionetgen/bng-mac/Perl2/Console.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,399   copying bionetgen/bng-mac/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,404   copying bionetgen/bng-mac/Perl2/Expression.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,413   copying bionetgen/bng-mac/Perl2/Function.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,418   copying bionetgen/bng-mac/Perl2/HNauty.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,424   copying bionetgen/bng-mac/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,427   copying bionetgen/bng-mac/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,436   copying bionetgen/bng-mac/Perl2/Map.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,440   copying bionetgen/bng-mac/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,444   copying bionetgen/bng-mac/Perl2/Molecule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,450   copying bionetgen/bng-mac/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,455   copying bionetgen/bng-mac/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,460   copying bionetgen/bng-mac/Perl2/Observable.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,465   copying bionetgen/bng-mac/Perl2/Param.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,470   copying bionetgen/bng-mac/Perl2/ParamList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,476   copying bionetgen/bng-mac/Perl2/Population.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,479   copying bionetgen/bng-mac/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,484   copying bionetgen/bng-mac/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,490   copying bionetgen/bng-mac/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,496   copying bionetgen/bng-mac/Perl2/Rxn.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,501   copying bionetgen/bng-mac/Perl2/RxnList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,506   copying bionetgen/bng-mac/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,518   copying bionetgen/bng-mac/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,524   copying bionetgen/bng-mac/Perl2/Species.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,529   copying bionetgen/bng-mac/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,539   copying bionetgen/bng-mac/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,545   copying bionetgen/bng-mac/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,549   copying bionetgen/bng-mac/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,553   copying bionetgen/bng-mac/Perl2/diff_net.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,558   copying bionetgen/bng-mac/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,563   copying bionetgen/bng-mac/Perl2/scan_var.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,568   copying bionetgen/bng-mac/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,573   copying bionetgen/bng-mac/Perl2/verify.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,577   creating build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,579   copying bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,583   copying bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,587   copying bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,591   copying bionetgen/bng-mac/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,594   copying bionetgen/bng-mac/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,598   copying bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,602   copying bionetgen/bng-mac/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,606   copying bionetgen/bng-mac/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,610   copying bionetgen/bng-mac/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,614   copying bionetgen/bng-mac/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,618   copying bionetgen/bng-mac/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,622   copying bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,627   copying bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,631   copying bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,635   copying bionetgen/bng-mac/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,638   creating build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,640   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,644   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,649   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,653   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,657   copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,661   creating build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,663   copying bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,667   copying bionetgen/bng-mac/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,675   copying bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,681   copying bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,686   copying bionetgen/bng-mac/Perl2/Visualization/README -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,690   copying bionetgen/bng-mac/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,694   copying bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,699   copying bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,703   copying bionetgen/bng-mac/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,710   copying bionetgen/bng-mac/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,715   copying bionetgen/bng-mac/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,719   copying bionetgen/bng-mac/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,724   creating build/lib/bionetgen/bng-mac/Perl2/XML
2023-07-25T18:18:49,726   copying bionetgen/bng-mac/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-mac/Perl2/XML
2023-07-25T18:18:49,732   creating build/lib/bionetgen/bng-mac/bin
2023-07-25T18:18:49,735   copying bionetgen/bng-mac/bin/NFsim -> build/lib/bionetgen/bng-mac/bin
2023-07-25T18:18:49,873   copying bionetgen/bng-mac/bin/run_network -> build/lib/bionetgen/bng-mac/bin
2023-07-25T18:18:50,028   copying bionetgen/bng-mac/bin/sundials-config -> build/lib/bionetgen/bng-mac/bin
2023-07-25T18:18:50,034   creating build/lib/bionetgen/bng-win
2023-07-25T18:18:50,036   copying bionetgen/bng-win/BNG2.pl -> build/lib/bionetgen/bng-win
2023-07-25T18:18:50,043   copying bionetgen/bng-win/VERSION -> build/lib/bionetgen/bng-win
2023-07-25T18:18:50,048   creating build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,050   copying bionetgen/bng-win/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,059   copying bionetgen/bng-win/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,064   copying bionetgen/bng-win/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,074   copying bionetgen/bng-win/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,077   copying bionetgen/bng-win/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,090   copying bionetgen/bng-win/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,096   copying bionetgen/bng-win/Perl2/Cache.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,101   copying bionetgen/bng-win/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,106   copying bionetgen/bng-win/Perl2/Compartment.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,111   copying bionetgen/bng-win/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,116   copying bionetgen/bng-win/Perl2/Component.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,122   copying bionetgen/bng-win/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,128   copying bionetgen/bng-win/Perl2/Console.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,133   copying bionetgen/bng-win/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,138   copying bionetgen/bng-win/Perl2/Expression.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,149   copying bionetgen/bng-win/Perl2/Function.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,154   copying bionetgen/bng-win/Perl2/HNauty.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,161   copying bionetgen/bng-win/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,165   copying bionetgen/bng-win/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,176   copying bionetgen/bng-win/Perl2/Map.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,182   copying bionetgen/bng-win/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,186   copying bionetgen/bng-win/Perl2/Molecule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,193   copying bionetgen/bng-win/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,198   copying bionetgen/bng-win/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,203   copying bionetgen/bng-win/Perl2/Observable.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,210   copying bionetgen/bng-win/Perl2/Param.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,214   copying bionetgen/bng-win/Perl2/ParamList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,220   copying bionetgen/bng-win/Perl2/Population.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,224   copying bionetgen/bng-win/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,229   copying bionetgen/bng-win/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,235   copying bionetgen/bng-win/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,242   copying bionetgen/bng-win/Perl2/Rxn.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,247   copying bionetgen/bng-win/Perl2/RxnList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,253   copying bionetgen/bng-win/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,265   copying bionetgen/bng-win/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,271   copying bionetgen/bng-win/Perl2/Species.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,277   copying bionetgen/bng-win/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,288   copying bionetgen/bng-win/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,295   copying bionetgen/bng-win/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,300   copying bionetgen/bng-win/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,306   copying bionetgen/bng-win/Perl2/diff_net.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,312   copying bionetgen/bng-win/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,318   copying bionetgen/bng-win/Perl2/scan_var.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,325   copying bionetgen/bng-win/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,330   copying bionetgen/bng-win/Perl2/verify.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,335   creating build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,337   copying bionetgen/bng-win/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,342   copying bionetgen/bng-win/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,346   copying bionetgen/bng-win/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,350   copying bionetgen/bng-win/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,355   copying bionetgen/bng-win/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,359   copying bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,364   copying bionetgen/bng-win/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,368   copying bionetgen/bng-win/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,373   copying bionetgen/bng-win/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,377   copying bionetgen/bng-win/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,381   copying bionetgen/bng-win/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,386   copying bionetgen/bng-win/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,390   copying bionetgen/bng-win/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,395   copying bionetgen/bng-win/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,399   copying bionetgen/bng-win/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,403   creating build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,405   copying bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,409   copying bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,414   copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,419   copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,423   copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,428   creating build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,430   copying bionetgen/bng-win/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,435   copying bionetgen/bng-win/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,443   copying bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,449   copying bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,454   copying bionetgen/bng-win/Perl2/Visualization/README -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,459   copying bionetgen/bng-win/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,464   copying bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,469   copying bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,473   copying bionetgen/bng-win/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,482   copying bionetgen/bng-win/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,488   copying bionetgen/bng-win/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,492   copying bionetgen/bng-win/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,497   creating build/lib/bionetgen/bng-win/Perl2/XML
2023-07-25T18:18:50,498   copying bionetgen/bng-win/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-win/Perl2/XML
2023-07-25T18:18:50,506   creating build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:50,508   copying bionetgen/bng-win/bin/NFsim.exe -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:50,658   copying bionetgen/bng-win/bin/cyggcc_s-seh-1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:50,670   copying bionetgen/bng-win/bin/cygstdc++-6.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:50,827   copying bionetgen/bng-win/bin/cygwin1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,045   copying bionetgen/bng-win/bin/cygz.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,057   copying bionetgen/bng-win/bin/cygzstd-1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,112   copying bionetgen/bng-win/bin/libgcc_s_seh-1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,156   copying bionetgen/bng-win/bin/libstdc++-6.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,304   copying bionetgen/bng-win/bin/libwinpthread-1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,318   copying bionetgen/bng-win/bin/run_network.exe -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:52,284   copying bionetgen/bng-win/bin/sundials-config -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:52,401   /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-07-25T18:18:52,401   !!

2023-07-25T18:18:52,402           ********************************************************************************
2023-07-25T18:18:52,402           Please avoid running ``setup.py`` directly.
2023-07-25T18:18:52,403           Instead, use pypa/build, pypa/installer, pypa/build or
2023-07-25T18:18:52,403           other standards-based tools.

2023-07-25T18:18:52,404           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-07-25T18:18:52,404           ********************************************************************************

2023-07-25T18:18:52,405   !!
2023-07-25T18:18:52,405     self.initialize_options()
2023-07-25T18:18:52,487   installing to build/bdist.linux-armv7l/wheel
2023-07-25T18:18:52,488   running install
2023-07-25T18:18:52,549   running install_lib
2023-07-25T18:18:52,630   creating build/bdist.linux-armv7l
2023-07-25T18:18:52,632   creating build/bdist.linux-armv7l/wheel
2023-07-25T18:18:52,635   creating build/bdist.linux-armv7l/wheel/bionetgen
2023-07-25T18:18:52,639   creating build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,641   copying build/lib/bionetgen/network/structs.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,646   copying build/lib/bionetgen/network/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,649   copying build/lib/bionetgen/network/network.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,654   copying build/lib/bionetgen/network/blocks.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,659   copying build/lib/bionetgen/network/networkparser.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,663   copying build/lib/bionetgen/main.py -> build/bdist.linux-armv7l/wheel/bionetgen
2023-07-25T18:18:52,670   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-07-25T18:18:52,673   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,675   copying build/lib/bionetgen/bng-win/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,768   copying build/lib/bionetgen/bng-win/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,776   copying build/lib/bionetgen/bng-win/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,780   copying build/lib/bionetgen/bng-win/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,932   copying build/lib/bionetgen/bng-win/bin/libwinpthread-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,944   copying build/lib/bionetgen/bng-win/bin/libgcc_s_seh-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,979   copying build/lib/bionetgen/bng-win/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,079   copying build/lib/bionetgen/bng-win/bin/cygzstd-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,121   copying build/lib/bionetgen/bng-win/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,128   copying build/lib/bionetgen/bng-win/bin/NFsim.exe -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,232   copying build/lib/bionetgen/bng-win/bin/run_network.exe -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,748   copying build/lib/bionetgen/bng-win/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-07-25T18:18:53,753   copying build/lib/bionetgen/bng-win/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-07-25T18:18:53,759   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,762   copying build/lib/bionetgen/bng-win/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,767   copying build/lib/bionetgen/bng-win/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,772   copying build/lib/bionetgen/bng-win/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,777   copying build/lib/bionetgen/bng-win/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,783   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,785   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,789   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,793   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,797   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,801   copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,805   copying build/lib/bionetgen/bng-win/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,810   copying build/lib/bionetgen/bng-win/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,815   copying build/lib/bionetgen/bng-win/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,819   copying build/lib/bionetgen/bng-win/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,824   copying build/lib/bionetgen/bng-win/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,836   copying build/lib/bionetgen/bng-win/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,841   copying build/lib/bionetgen/bng-win/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,847   copying build/lib/bionetgen/bng-win/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,851   copying build/lib/bionetgen/bng-win/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,855   copying build/lib/bionetgen/bng-win/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,859   copying build/lib/bionetgen/bng-win/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,864   copying build/lib/bionetgen/bng-win/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,868   copying build/lib/bionetgen/bng-win/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,874   copying build/lib/bionetgen/bng-win/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,879   copying build/lib/bionetgen/bng-win/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,887   copying build/lib/bionetgen/bng-win/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,893   copying build/lib/bionetgen/bng-win/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,898   copying build/lib/bionetgen/bng-win/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,903   copying build/lib/bionetgen/bng-win/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,908   copying build/lib/bionetgen/bng-win/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,912   copying build/lib/bionetgen/bng-win/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,918   copying build/lib/bionetgen/bng-win/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,921   copying build/lib/bionetgen/bng-win/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,925   copying build/lib/bionetgen/bng-win/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,929   copying build/lib/bionetgen/bng-win/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,941   copying build/lib/bionetgen/bng-win/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,945   copying build/lib/bionetgen/bng-win/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,950   copying build/lib/bionetgen/bng-win/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,956   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/XML
2023-07-25T18:18:53,958   copying build/lib/bionetgen/bng-win/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/XML
2023-07-25T18:18:53,966   copying build/lib/bionetgen/bng-win/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,973   copying build/lib/bionetgen/bng-win/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,984   copying build/lib/bionetgen/bng-win/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,991   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:53,993   copying build/lib/bionetgen/bng-win/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:53,998   copying build/lib/bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,004   copying build/lib/bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,010   copying build/lib/bionetgen/bng-win/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,018   copying build/lib/bionetgen/bng-win/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,022   copying build/lib/bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,026   copying build/lib/bionetgen/bng-win/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,031   copying build/lib/bionetgen/bng-win/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,036   copying build/lib/bionetgen/bng-win/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,041   copying build/lib/bionetgen/bng-win/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,047   copying build/lib/bionetgen/bng-win/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,055   copying build/lib/bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,060   copying build/lib/bionetgen/bng-win/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,066   copying build/lib/bionetgen/bng-win/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,072   copying build/lib/bionetgen/bng-win/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,082   copying build/lib/bionetgen/bng-win/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,087   copying build/lib/bionetgen/bng-win/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,102   copying build/lib/bionetgen/bng-win/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,108   copying build/lib/bionetgen/bng-win/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,115   copying build/lib/bionetgen/bng-win/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,122   copying build/lib/bionetgen/bng-win/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,128   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,130   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,134   copying build/lib/bionetgen/bng-win/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,138   copying build/lib/bionetgen/bng-win/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,142   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,146   copying build/lib/bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,150   copying build/lib/bionetgen/bng-win/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,154   copying build/lib/bionetgen/bng-win/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,158   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,162   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,166   copying build/lib/bionetgen/bng-win/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,169   copying build/lib/bionetgen/bng-win/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,174   copying build/lib/bionetgen/bng-win/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,177   copying build/lib/bionetgen/bng-win/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,182   copying build/lib/bionetgen/bng-win/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,185   copying build/lib/bionetgen/bng-win/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,189   copying build/lib/bionetgen/bng-win/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,196   creating build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,198   copying build/lib/bionetgen/assets/BNGVERSION -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,202   copying build/lib/bionetgen/assets/ghapi.json -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,206   copying build/lib/bionetgen/assets/bionetgen.ipynb -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,211   copying build/lib/bionetgen/assets/bionetgen-temp.ipynb -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,216   copying build/lib/bionetgen/assets/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,220   copying build/lib/bionetgen/assets/get_version_json.py -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,223   copying build/lib/bionetgen/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen
2023-07-25T18:18:54,228   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-07-25T18:18:54,231   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-07-25T18:18:54,233   copying build/lib/bionetgen/bng-mac/bin/NFsim -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-07-25T18:18:54,308   copying build/lib/bionetgen/bng-mac/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-07-25T18:18:54,312   copying build/lib/bionetgen/bng-mac/bin/run_network -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-07-25T18:18:54,414   copying build/lib/bionetgen/bng-mac/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-07-25T18:18:54,419   copying build/lib/bionetgen/bng-mac/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-07-25T18:18:54,425   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,427   copying build/lib/bionetgen/bng-mac/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,432   copying build/lib/bionetgen/bng-mac/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,437   copying build/lib/bionetgen/bng-mac/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,442   copying build/lib/bionetgen/bng-mac/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,447   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,449   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,453   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,457   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,461   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,465   copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,469   copying build/lib/bionetgen/bng-mac/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,473   copying build/lib/bionetgen/bng-mac/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,478   copying build/lib/bionetgen/bng-mac/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,483   copying build/lib/bionetgen/bng-mac/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,488   copying build/lib/bionetgen/bng-mac/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,500   copying build/lib/bionetgen/bng-mac/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,506   copying build/lib/bionetgen/bng-mac/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,512   copying build/lib/bionetgen/bng-mac/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,516   copying build/lib/bionetgen/bng-mac/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,522   copying build/lib/bionetgen/bng-mac/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,526   copying build/lib/bionetgen/bng-mac/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,531   copying build/lib/bionetgen/bng-mac/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,535   copying build/lib/bionetgen/bng-mac/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,542   copying build/lib/bionetgen/bng-mac/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,547   copying build/lib/bionetgen/bng-mac/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,555   copying build/lib/bionetgen/bng-mac/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,559   copying build/lib/bionetgen/bng-mac/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,564   copying build/lib/bionetgen/bng-mac/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,569   copying build/lib/bionetgen/bng-mac/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,573   copying build/lib/bionetgen/bng-mac/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,577   copying build/lib/bionetgen/bng-mac/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,583   copying build/lib/bionetgen/bng-mac/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,588   copying build/lib/bionetgen/bng-mac/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,593   copying build/lib/bionetgen/bng-mac/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,598   copying build/lib/bionetgen/bng-mac/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,606   copying build/lib/bionetgen/bng-mac/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,611   copying build/lib/bionetgen/bng-mac/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,617   copying build/lib/bionetgen/bng-mac/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,623   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/XML
2023-07-25T18:18:54,625   copying build/lib/bionetgen/bng-mac/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/XML
2023-07-25T18:18:54,633   copying build/lib/bionetgen/bng-mac/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,641   copying build/lib/bionetgen/bng-mac/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,651   copying build/lib/bionetgen/bng-mac/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,659   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,662   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,667   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,673   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,679   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,687   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,692   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,697   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,703   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,708   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,712   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,717   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,725   copying build/lib/bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,730   copying build/lib/bionetgen/bng-mac/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,735   copying build/lib/bionetgen/bng-mac/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,740   copying build/lib/bionetgen/bng-mac/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,750   copying build/lib/bionetgen/bng-mac/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,755   copying build/lib/bionetgen/bng-mac/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,771   copying build/lib/bionetgen/bng-mac/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,775   copying build/lib/bionetgen/bng-mac/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,780   copying build/lib/bionetgen/bng-mac/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,786   copying build/lib/bionetgen/bng-mac/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,794   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,796   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,801   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,806   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,810   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,814   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,818   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,822   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,825   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,829   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,833   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,836   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,840   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,845   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,849   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,854   copying build/lib/bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,859   copying build/lib/bionetgen/bng-mac/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,864   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-07-25T18:18:54,866   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-07-25T18:18:54,868   copying build/lib/bionetgen/bng-linux/bin/NFsim -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-07-25T18:18:54,960   copying build/lib/bionetgen/bng-linux/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-07-25T18:18:54,963   copying build/lib/bionetgen/bng-linux/bin/run_network -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-07-25T18:18:55,072   copying build/lib/bionetgen/bng-linux/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-07-25T18:18:55,077   copying build/lib/bionetgen/bng-linux/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-07-25T18:18:55,083   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,084   copying build/lib/bionetgen/bng-linux/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,089   copying build/lib/bionetgen/bng-linux/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,094   copying build/lib/bionetgen/bng-linux/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,099   copying build/lib/bionetgen/bng-linux/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,103   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,105   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,108   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,112   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,115   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,119   copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,123   copying build/lib/bionetgen/bng-linux/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,127   copying build/lib/bionetgen/bng-linux/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,132   copying build/lib/bionetgen/bng-linux/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,136   copying build/lib/bionetgen/bng-linux/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,141   copying build/lib/bionetgen/bng-linux/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,151   copying build/lib/bionetgen/bng-linux/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,156   copying build/lib/bionetgen/bng-linux/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,160   copying build/lib/bionetgen/bng-linux/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,164   copying build/lib/bionetgen/bng-linux/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,167   copying build/lib/bionetgen/bng-linux/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,171   copying build/lib/bionetgen/bng-linux/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,175   copying build/lib/bionetgen/bng-linux/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,178   copying build/lib/bionetgen/bng-linux/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,183   copying build/lib/bionetgen/bng-linux/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,187   copying build/lib/bionetgen/bng-linux/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,195   copying build/lib/bionetgen/bng-linux/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,200   copying build/lib/bionetgen/bng-linux/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,204   copying build/lib/bionetgen/bng-linux/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,208   copying build/lib/bionetgen/bng-linux/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,213   copying build/lib/bionetgen/bng-linux/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,216   copying build/lib/bionetgen/bng-linux/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,222   copying build/lib/bionetgen/bng-linux/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,225   copying build/lib/bionetgen/bng-linux/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,229   copying build/lib/bionetgen/bng-linux/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,233   copying build/lib/bionetgen/bng-linux/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,241   copying build/lib/bionetgen/bng-linux/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,245   copying build/lib/bionetgen/bng-linux/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,250   copying build/lib/bionetgen/bng-linux/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,256   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/XML
2023-07-25T18:18:55,257   copying build/lib/bionetgen/bng-linux/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/XML
2023-07-25T18:18:55,264   copying build/lib/bionetgen/bng-linux/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,272   copying build/lib/bionetgen/bng-linux/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,282   copying build/lib/bionetgen/bng-linux/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,289   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,291   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,295   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,301   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,305   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,312   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,316   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,319   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,324   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,328   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,332   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,336   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,343   copying build/lib/bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,348   copying build/lib/bionetgen/bng-linux/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,353   copying build/lib/bionetgen/bng-linux/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,358   copying build/lib/bionetgen/bng-linux/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,367   copying build/lib/bionetgen/bng-linux/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,371   copying build/lib/bionetgen/bng-linux/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,383   copying build/lib/bionetgen/bng-linux/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,387   copying build/lib/bionetgen/bng-linux/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,392   copying build/lib/bionetgen/bng-linux/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,398   copying build/lib/bionetgen/bng-linux/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,404   creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,406   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,410   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,414   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,417   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,421   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,424   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,428   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,431   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,435   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,438   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,441   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,445   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,448   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,452   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,455   copying build/lib/bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,459   copying build/lib/bionetgen/bng-linux/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,464   creating build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,466   copying build/lib/bionetgen/modelapi/structs.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,471   copying build/lib/bionetgen/modelapi/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,474   copying build/lib/bionetgen/modelapi/bngparser.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,479   copying build/lib/bionetgen/modelapi/pattern_reader.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,484   copying build/lib/bionetgen/modelapi/xmlparsers.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,490   copying build/lib/bionetgen/modelapi/runner.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,493   copying build/lib/bionetgen/modelapi/blocks.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,498   copying build/lib/bionetgen/modelapi/model.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,503   copying build/lib/bionetgen/modelapi/bngfile.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,507   copying build/lib/bionetgen/modelapi/pattern.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,512   copying build/lib/bionetgen/modelapi/rulemod.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,517   creating build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,518   copying build/lib/bionetgen/simulator/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,522   copying build/lib/bionetgen/simulator/csimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,526   copying build/lib/bionetgen/simulator/bngsimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,530   copying build/lib/bionetgen/simulator/simulators.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,533   copying build/lib/bionetgen/simulator/librrsimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,538   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,540   copying build/lib/bionetgen/atomizer/libsbml2bngl.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,548   copying build/lib/bionetgen/atomizer/contextAnalyzer.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,553   copying build/lib/bionetgen/atomizer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,557   copying build/lib/bionetgen/atomizer/sbmlTranslator.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,561   copying build/lib/bionetgen/atomizer/contactMap.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,565   copying build/lib/bionetgen/atomizer/bngModel.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,575   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,576   copying build/lib/bionetgen/atomizer/utils/annotationExtender.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,582   copying build/lib/bionetgen/atomizer/utils/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,584   copying build/lib/bionetgen/atomizer/utils/annotationDeletion.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,589   copying build/lib/bionetgen/atomizer/utils/modelComparison.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,593   copying build/lib/bionetgen/atomizer/utils/util.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,597   copying build/lib/bionetgen/atomizer/utils/consoleCommands.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,601   copying build/lib/bionetgen/atomizer/utils/structures.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,606   copying build/lib/bionetgen/atomizer/utils/readBNGXML.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,611   copying build/lib/bionetgen/atomizer/utils/extractAtomic.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,616   copying build/lib/bionetgen/atomizer/utils/nameNormalizer.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,620   copying build/lib/bionetgen/atomizer/utils/annotationResolver.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,624   copying build/lib/bionetgen/atomizer/utils/annotationComparison.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,629   copying build/lib/bionetgen/atomizer/utils/annotationExtractor.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,633   copying build/lib/bionetgen/atomizer/utils/pathwaycommons.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,638   copying build/lib/bionetgen/atomizer/utils/smallStructures.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,643   copying build/lib/bionetgen/atomizer/parseAnnotation.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,646   copying build/lib/bionetgen/atomizer/sbml2json.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,652   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-07-25T18:18:55,654   copying build/lib/bionetgen/atomizer/merging/namingDatabase.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-07-25T18:18:55,659   copying build/lib/bionetgen/atomizer/merging/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-07-25T18:18:55,663   copying build/lib/bionetgen/atomizer/merging/compareNamingConventions.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-07-25T18:18:55,666   copying build/lib/bionetgen/atomizer/sbml2bngl.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,679   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,680   copying build/lib/bionetgen/atomizer/atomizer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,685   copying build/lib/bionetgen/atomizer/atomizer/analyzeSBML.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,694   copying build/lib/bionetgen/atomizer/atomizer/analyzeRDF.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,698   copying build/lib/bionetgen/atomizer/atomizer/detectOntology.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,702   copying build/lib/bionetgen/atomizer/atomizer/atomizationAux.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,706   copying build/lib/bionetgen/atomizer/atomizer/moleculeCreation.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,713   copying build/lib/bionetgen/atomizer/atomizer/atomizerUtils.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,717   copying build/lib/bionetgen/atomizer/atomizer/resolveSCT.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,726   copying build/lib/bionetgen/atomizer/biogrid.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,731   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-07-25T18:18:55,734   copying build/lib/bionetgen/atomizer/writer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-07-25T18:18:55,737   copying build/lib/bionetgen/atomizer/writer/bnglWriter.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-07-25T18:18:55,744   creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,746   copying build/lib/bionetgen/atomizer/rulifier/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,750   copying build/lib/bionetgen/atomizer/rulifier/componentGroups.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,757   copying build/lib/bionetgen/atomizer/rulifier/compareModels.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,762   copying build/lib/bionetgen/atomizer/rulifier/stateTransitionDiagram.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,767   copying build/lib/bionetgen/atomizer/rulifier/stdgraph.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,773   copying build/lib/bionetgen/atomizer/rulifier/parameterExtraction.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,778   copying build/lib/bionetgen/atomizer/rulifier/postAnalysis.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,785   copying build/lib/bionetgen/atomizer/rulifier/arial10.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,790   copying build/lib/bionetgen/atomizer/atomizeTool.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,795   creating build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,798   copying build/lib/bionetgen/core/notebook.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,803   copying build/lib/bionetgen/core/main.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,808   copying build/lib/bionetgen/core/exc.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,812   copying build/lib/bionetgen/core/version.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,816   copying build/lib/bionetgen/core/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,820   creating build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-07-25T18:18:55,823   copying build/lib/bionetgen/core/utils/logging.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-07-25T18:18:55,827   copying build/lib/bionetgen/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-07-25T18:18:55,831   copying build/lib/bionetgen/core/utils/utils.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-07-25T18:18:55,838   creating build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,840   copying build/lib/bionetgen/core/tools/gdiff.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,846   copying build/lib/bionetgen/core/tools/visualize.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,850   copying build/lib/bionetgen/core/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,854   copying build/lib/bionetgen/core/tools/plot.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,857   copying build/lib/bionetgen/core/tools/info.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,861   copying build/lib/bionetgen/core/tools/cli.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,865   copying build/lib/bionetgen/core/tools/result.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,869   copying build/lib/bionetgen/core/defaults.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,873   running install_egg_info
2023-07-25T18:18:55,954   Copying bionetgen.egg-info to build/bdist.linux-armv7l/wheel/bionetgen-0.8.1-py3.7.egg-info
2023-07-25T18:18:55,984   running install_scripts
2023-07-25T18:18:56,026   creating build/bdist.linux-armv7l/wheel/bionetgen-0.8.1.dist-info/WHEEL
2023-07-25T18:18:56,032   creating '/tmp/pip-wheel-0_afdub5/bionetgen-0.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-07-25T18:18:56,037   adding 'bionetgen/__init__.py'
2023-07-25T18:18:56,044   adding 'bionetgen/main.py'
2023-07-25T18:18:56,048   adding 'bionetgen/assets/BNGVERSION'
2023-07-25T18:18:56,050   adding 'bionetgen/assets/VERSION'
2023-07-25T18:18:56,056   adding 'bionetgen/assets/bionetgen-temp.ipynb'
2023-07-25T18:18:56,062   adding 'bionetgen/assets/bionetgen.ipynb'
2023-07-25T18:18:56,065   adding 'bionetgen/assets/get_version_json.py'
2023-07-25T18:18:56,068   adding 'bionetgen/assets/ghapi.json'
2023-07-25T18:18:56,072   adding 'bionetgen/atomizer/__init__.py'
2023-07-25T18:18:56,075   adding 'bionetgen/atomizer/atomizeTool.py'
2023-07-25T18:18:56,078   adding 'bionetgen/atomizer/biogrid.py'
2023-07-25T18:18:56,097   adding 'bionetgen/atomizer/bngModel.py'
2023-07-25T18:18:56,102   adding 'bionetgen/atomizer/contactMap.py'
2023-07-25T18:18:56,108   adding 'bionetgen/atomizer/contextAnalyzer.py'
2023-07-25T18:18:56,129   adding 'bionetgen/atomizer/libsbml2bngl.py'
2023-07-25T18:18:56,133   adding 'bionetgen/atomizer/parseAnnotation.py'
2023-07-25T18:18:56,171   adding 'bionetgen/atomizer/sbml2bngl.py'
2023-07-25T18:18:56,179   adding 'bionetgen/atomizer/sbml2json.py'
2023-07-25T18:18:56,183   adding 'bionetgen/atomizer/sbmlTranslator.py'
2023-07-25T18:18:56,186   adding 'bionetgen/atomizer/atomizer/__init__.py'
2023-07-25T18:18:56,189   adding 'bionetgen/atomizer/atomizer/analyzeRDF.py'
2023-07-25T18:18:56,216   adding 'bionetgen/atomizer/atomizer/analyzeSBML.py'
2023-07-25T18:18:56,222   adding 'bionetgen/atomizer/atomizer/atomizationAux.py'
2023-07-25T18:18:56,224   adding 'bionetgen/atomizer/atomizer/atomizerUtils.py'
2023-07-25T18:18:56,229   adding 'bionetgen/atomizer/atomizer/detectOntology.py'
2023-07-25T18:18:56,243   adding 'bionetgen/atomizer/atomizer/moleculeCreation.py'
2023-07-25T18:18:56,264   adding 'bionetgen/atomizer/atomizer/resolveSCT.py'
2023-07-25T18:18:56,269   adding 'bionetgen/atomizer/merging/__init__.py'
2023-07-25T18:18:56,271   adding 'bionetgen/atomizer/merging/compareNamingConventions.py'
2023-07-25T18:18:56,276   adding 'bionetgen/atomizer/merging/namingDatabase.py'
2023-07-25T18:18:56,280   adding 'bionetgen/atomizer/rulifier/__init__.py'
2023-07-25T18:18:56,283   adding 'bionetgen/atomizer/rulifier/arial10.py'
2023-07-25T18:18:56,288   adding 'bionetgen/atomizer/rulifier/compareModels.py'
2023-07-25T18:18:56,296   adding 'bionetgen/atomizer/rulifier/componentGroups.py'
2023-07-25T18:18:56,300   adding 'bionetgen/atomizer/rulifier/parameterExtraction.py'
2023-07-25T18:18:56,307   adding 'bionetgen/atomizer/rulifier/postAnalysis.py'
2023-07-25T18:18:56,312   adding 'bionetgen/atomizer/rulifier/stateTransitionDiagram.py'
2023-07-25T18:18:56,316   adding 'bionetgen/atomizer/rulifier/stdgraph.py'
2023-07-25T18:18:56,320   adding 'bionetgen/atomizer/utils/__init__.py'
2023-07-25T18:18:56,324   adding 'bionetgen/atomizer/utils/annotationComparison.py'
2023-07-25T18:18:56,328   adding 'bionetgen/atomizer/utils/annotationDeletion.py'
2023-07-25T18:18:56,334   adding 'bionetgen/atomizer/utils/annotationExtender.py'
2023-07-25T18:18:56,339   adding 'bionetgen/atomizer/utils/annotationExtractor.py'
2023-07-25T18:18:56,342   adding 'bionetgen/atomizer/utils/annotationResolver.py'
2023-07-25T18:18:56,345   adding 'bionetgen/atomizer/utils/consoleCommands.py'
2023-07-25T18:18:56,348   adding 'bionetgen/atomizer/utils/extractAtomic.py'
2023-07-25T18:18:56,351   adding 'bionetgen/atomizer/utils/modelComparison.py'
2023-07-25T18:18:56,354   adding 'bionetgen/atomizer/utils/nameNormalizer.py'
2023-07-25T18:18:56,358   adding 'bionetgen/atomizer/utils/pathwaycommons.py'
2023-07-25T18:18:56,363   adding 'bionetgen/atomizer/utils/readBNGXML.py'
2023-07-25T18:18:56,371   adding 'bionetgen/atomizer/utils/smallStructures.py'
2023-07-25T18:18:56,377   adding 'bionetgen/atomizer/utils/structures.py'
2023-07-25T18:18:56,382   adding 'bionetgen/atomizer/utils/util.py'
2023-07-25T18:18:56,386   adding 'bionetgen/atomizer/writer/__init__.py'
2023-07-25T18:18:56,392   adding 'bionetgen/atomizer/writer/bnglWriter.py'
2023-07-25T18:18:56,397   adding 'bionetgen/bng-linux/BNG2.pl'
2023-07-25T18:18:56,400   adding 'bionetgen/bng-linux/VERSION'
2023-07-25T18:18:56,425   adding 'bionetgen/bng-linux/Perl2/BNGAction.pm'
2023-07-25T18:18:56,429   adding 'bionetgen/bng-linux/Perl2/BNGMessages.pm'
2023-07-25T18:18:56,453   adding 'bionetgen/bng-linux/Perl2/BNGModel.pm'
2023-07-25T18:18:56,457   adding 'bionetgen/bng-linux/Perl2/BNGOptions.pm'
2023-07-25T18:18:56,493   adding 'bionetgen/bng-linux/Perl2/BNGOutput.pm'
2023-07-25T18:18:56,501   adding 'bionetgen/bng-linux/Perl2/BNGUtils.pm'
2023-07-25T18:18:56,504   adding 'bionetgen/bng-linux/Perl2/Cache.pm'
2023-07-25T18:18:56,508   adding 'bionetgen/bng-linux/Perl2/CartesianProduct.pm'
2023-07-25T18:18:56,513   adding 'bionetgen/bng-linux/Perl2/Compartment.pm'
2023-07-25T18:18:56,516   adding 'bionetgen/bng-linux/Perl2/CompartmentList.pm'
2023-07-25T18:18:56,522   adding 'bionetgen/bng-linux/Perl2/Component.pm'
2023-07-25T18:18:56,526   adding 'bionetgen/bng-linux/Perl2/ComponentType.pm'
2023-07-25T18:18:56,529   adding 'bionetgen/bng-linux/Perl2/Console.pm'
2023-07-25T18:18:56,533   adding 'bionetgen/bng-linux/Perl2/EnergyPattern.pm'
2023-07-25T18:18:56,552   adding 'bionetgen/bng-linux/Perl2/Expression.pm'
2023-07-25T18:18:56,558   adding 'bionetgen/bng-linux/Perl2/Function.pm'
2023-07-25T18:18:56,568   adding 'bionetgen/bng-linux/Perl2/HNauty.pm'
2023-07-25T18:18:56,571   adding 'bionetgen/bng-linux/Perl2/MacroBNG2.pl'
2023-07-25T18:18:56,596   adding 'bionetgen/bng-linux/Perl2/MacroBNGModel.pm'
2023-07-25T18:18:56,602   adding 'bionetgen/bng-linux/Perl2/Map.pm'
2023-07-25T18:18:56,605   adding 'bionetgen/bng-linux/Perl2/ModelWrapper.pm'
2023-07-25T18:18:56,610   adding 'bionetgen/bng-linux/Perl2/Molecule.pm'
2023-07-25T18:18:56,616   adding 'bionetgen/bng-linux/Perl2/MoleculeType.pm'
2023-07-25T18:18:56,620   adding 'bionetgen/bng-linux/Perl2/MoleculeTypesList.pm'
2023-07-25T18:18:56,626   adding 'bionetgen/bng-linux/Perl2/Observable.pm'
2023-07-25T18:18:56,630   adding 'bionetgen/bng-linux/Perl2/Param.pm'
2023-07-25T18:18:56,638   adding 'bionetgen/bng-linux/Perl2/ParamList.pm'
2023-07-25T18:18:56,641   adding 'bionetgen/bng-linux/Perl2/Population.pm'
2023-07-25T18:18:56,644   adding 'bionetgen/bng-linux/Perl2/PopulationList.pm'
2023-07-25T18:18:56,656   adding 'bionetgen/bng-linux/Perl2/RateLaw.pm'
2023-07-25T18:18:56,664   adding 'bionetgen/bng-linux/Perl2/RefineRule.pm'
2023-07-25T18:18:56,669   adding 'bionetgen/bng-linux/Perl2/Rxn.pm'
2023-07-25T18:18:56,674   adding 'bionetgen/bng-linux/Perl2/RxnList.pm'
2023-07-25T18:18:56,720   adding 'bionetgen/bng-linux/Perl2/RxnRule.pm'
2023-07-25T18:18:56,728   adding 'bionetgen/bng-linux/Perl2/SBMLMultiAux.pm'
2023-07-25T18:18:56,731   adding 'bionetgen/bng-linux/Perl2/Species.pm'
2023-07-25T18:18:56,765   adding 'bionetgen/bng-linux/Perl2/SpeciesGraph.pm'
2023-07-25T18:18:56,774   adding 'bionetgen/bng-linux/Perl2/SpeciesList.pm'
2023-07-25T18:18:56,777   adding 'bionetgen/bng-linux/Perl2/XMLReader.pm'
2023-07-25T18:18:56,781   adding 'bionetgen/bng-linux/Perl2/auto_hpp.pl'
2023-07-25T18:18:56,786   adding 'bionetgen/bng-linux/Perl2/diff_net.pl'
2023-07-25T18:18:56,792   adding 'bionetgen/bng-linux/Perl2/sample_vars_2.pl'
2023-07-25T18:18:56,797   adding 'bionetgen/bng-linux/Perl2/scan_var.pl'
2023-07-25T18:18:56,800   adding 'bionetgen/bng-linux/Perl2/test_cartesianproduct.pl'
2023-07-25T18:18:56,803   adding 'bionetgen/bng-linux/Perl2/verify.pl'
2023-07-25T18:18:56,808   adding 'bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl'
2023-07-25T18:18:56,810   adding 'bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl'
2023-07-25T18:18:56,813   adding 'bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl'
2023-07-25T18:18:56,815   adding 'bionetgen/bng-linux/Perl2/Aux2/count_lines.pl'
2023-07-25T18:18:56,818   adding 'bionetgen/bng-linux/Perl2/Aux2/countdown.pl'
2023-07-25T18:18:56,821   adding 'bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl'
2023-07-25T18:18:56,824   adding 'bionetgen/bng-linux/Perl2/Aux2/express.pl'
2023-07-25T18:18:56,827   adding 'bionetgen/bng-linux/Perl2/Aux2/express_main.pl'
2023-07-25T18:18:56,829   adding 'bionetgen/bng-linux/Perl2/Aux2/group_size.pl'
2023-07-25T18:18:56,832   adding 'bionetgen/bng-linux/Perl2/Aux2/runBNG.pl'
2023-07-25T18:18:56,835   adding 'bionetgen/bng-linux/Perl2/Aux2/test.pl'
2023-07-25T18:18:56,837   adding 'bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl'
2023-07-25T18:18:56,840   adding 'bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl'
2023-07-25T18:18:56,842   adding 'bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl'
2023-07-25T18:18:56,845   adding 'bionetgen/bng-linux/Perl2/Aux2/test_sub.pl'
2023-07-25T18:18:56,848   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt'
2023-07-25T18:18:56,852   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-07-25T18:18:56,855   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-07-25T18:18:56,858   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-07-25T18:18:56,861   adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-07-25T18:18:56,865   adding 'bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm'
2023-07-25T18:18:56,878   adding 'bionetgen/bng-linux/Perl2/Visualization/GML.pm'
2023-07-25T18:18:56,888   adding 'bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm'
2023-07-25T18:18:56,893   adding 'bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm'
2023-07-25T18:18:56,896   adding 'bionetgen/bng-linux/Perl2/Visualization/README'
2023-07-25T18:18:56,899   adding 'bionetgen/bng-linux/Perl2/Visualization/RINF.pm'
2023-07-25T18:18:56,905   adding 'bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm'
2023-07-25T18:18:56,908   adding 'bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm'
2023-07-25T18:18:56,923   adding 'bionetgen/bng-linux/Perl2/Visualization/Viz.pm'
2023-07-25T18:18:56,931   adding 'bionetgen/bng-linux/Perl2/Visualization/analyze.pl'
2023-07-25T18:18:56,934   adding 'bionetgen/bng-linux/Perl2/Visualization/readGML.pl'
2023-07-25T18:18:56,938   adding 'bionetgen/bng-linux/Perl2/Visualization/visualize.pl'
2023-07-25T18:18:56,950   adding 'bionetgen/bng-linux/Perl2/XML/TreePP.pm'
2023-07-25T18:18:57,873   adding 'bionetgen/bng-linux/bin/NFsim'
2023-07-25T18:18:58,678   adding 'bionetgen/bng-linux/bin/run_network'
2023-07-25T18:18:58,722   adding 'bionetgen/bng-linux/bin/sundials-config'
2023-07-25T18:18:58,727   adding 'bionetgen/bng-mac/BNG2.pl'
2023-07-25T18:18:58,730   adding 'bionetgen/bng-mac/VERSION'
2023-07-25T18:18:58,755   adding 'bionetgen/bng-mac/Perl2/BNGAction.pm'
2023-07-25T18:18:58,759   adding 'bionetgen/bng-mac/Perl2/BNGMessages.pm'
2023-07-25T18:18:58,783   adding 'bionetgen/bng-mac/Perl2/BNGModel.pm'
2023-07-25T18:18:58,788   adding 'bionetgen/bng-mac/Perl2/BNGOptions.pm'
2023-07-25T18:18:58,828   adding 'bionetgen/bng-mac/Perl2/BNGOutput.pm'
2023-07-25T18:18:58,837   adding 'bionetgen/bng-mac/Perl2/BNGUtils.pm'
2023-07-25T18:18:58,840   adding 'bionetgen/bng-mac/Perl2/Cache.pm'
2023-07-25T18:18:58,844   adding 'bionetgen/bng-mac/Perl2/CartesianProduct.pm'
2023-07-25T18:18:58,849   adding 'bionetgen/bng-mac/Perl2/Compartment.pm'
2023-07-25T18:18:58,853   adding 'bionetgen/bng-mac/Perl2/CompartmentList.pm'
2023-07-25T18:18:58,858   adding 'bionetgen/bng-mac/Perl2/Component.pm'
2023-07-25T18:18:58,862   adding 'bionetgen/bng-mac/Perl2/ComponentType.pm'
2023-07-25T18:18:58,866   adding 'bionetgen/bng-mac/Perl2/Console.pm'
2023-07-25T18:18:58,870   adding 'bionetgen/bng-mac/Perl2/EnergyPattern.pm'
2023-07-25T18:18:58,889   adding 'bionetgen/bng-mac/Perl2/Expression.pm'
2023-07-25T18:18:58,896   adding 'bionetgen/bng-mac/Perl2/Function.pm'
2023-07-25T18:18:58,904   adding 'bionetgen/bng-mac/Perl2/HNauty.pm'
2023-07-25T18:18:58,907   adding 'bionetgen/bng-mac/Perl2/MacroBNG2.pl'
2023-07-25T18:18:58,932   adding 'bionetgen/bng-mac/Perl2/MacroBNGModel.pm'
2023-07-25T18:18:58,938   adding 'bionetgen/bng-mac/Perl2/Map.pm'
2023-07-25T18:18:58,941   adding 'bionetgen/bng-mac/Perl2/ModelWrapper.pm'
2023-07-25T18:18:58,948   adding 'bionetgen/bng-mac/Perl2/Molecule.pm'
2023-07-25T18:18:58,954   adding 'bionetgen/bng-mac/Perl2/MoleculeType.pm'
2023-07-25T18:18:58,958   adding 'bionetgen/bng-mac/Perl2/MoleculeTypesList.pm'
2023-07-25T18:18:58,964   adding 'bionetgen/bng-mac/Perl2/Observable.pm'
2023-07-25T18:18:58,968   adding 'bionetgen/bng-mac/Perl2/Param.pm'
2023-07-25T18:18:58,975   adding 'bionetgen/bng-mac/Perl2/ParamList.pm'
2023-07-25T18:18:58,979   adding 'bionetgen/bng-mac/Perl2/Population.pm'
2023-07-25T18:18:58,982   adding 'bionetgen/bng-mac/Perl2/PopulationList.pm'
2023-07-25T18:18:58,993   adding 'bionetgen/bng-mac/Perl2/RateLaw.pm'
2023-07-25T18:18:59,002   adding 'bionetgen/bng-mac/Perl2/RefineRule.pm'
2023-07-25T18:18:59,007   adding 'bionetgen/bng-mac/Perl2/Rxn.pm'
2023-07-25T18:18:59,012   adding 'bionetgen/bng-mac/Perl2/RxnList.pm'
2023-07-25T18:18:59,056   adding 'bionetgen/bng-mac/Perl2/RxnRule.pm'
2023-07-25T18:18:59,064   adding 'bionetgen/bng-mac/Perl2/SBMLMultiAux.pm'
2023-07-25T18:18:59,068   adding 'bionetgen/bng-mac/Perl2/Species.pm'
2023-07-25T18:18:59,103   adding 'bionetgen/bng-mac/Perl2/SpeciesGraph.pm'
2023-07-25T18:18:59,112   adding 'bionetgen/bng-mac/Perl2/SpeciesList.pm'
2023-07-25T18:18:59,115   adding 'bionetgen/bng-mac/Perl2/XMLReader.pm'
2023-07-25T18:18:59,118   adding 'bionetgen/bng-mac/Perl2/auto_hpp.pl'
2023-07-25T18:18:59,123   adding 'bionetgen/bng-mac/Perl2/diff_net.pl'
2023-07-25T18:18:59,129   adding 'bionetgen/bng-mac/Perl2/sample_vars_2.pl'
2023-07-25T18:18:59,134   adding 'bionetgen/bng-mac/Perl2/scan_var.pl'
2023-07-25T18:18:59,137   adding 'bionetgen/bng-mac/Perl2/test_cartesianproduct.pl'
2023-07-25T18:18:59,141   adding 'bionetgen/bng-mac/Perl2/verify.pl'
2023-07-25T18:18:59,145   adding 'bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl'
2023-07-25T18:18:59,147   adding 'bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl'
2023-07-25T18:18:59,150   adding 'bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl'
2023-07-25T18:18:59,152   adding 'bionetgen/bng-mac/Perl2/Aux2/count_lines.pl'
2023-07-25T18:18:59,155   adding 'bionetgen/bng-mac/Perl2/Aux2/countdown.pl'
2023-07-25T18:18:59,157   adding 'bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl'
2023-07-25T18:18:59,160   adding 'bionetgen/bng-mac/Perl2/Aux2/express.pl'
2023-07-25T18:18:59,163   adding 'bionetgen/bng-mac/Perl2/Aux2/express_main.pl'
2023-07-25T18:18:59,166   adding 'bionetgen/bng-mac/Perl2/Aux2/group_size.pl'
2023-07-25T18:18:59,169   adding 'bionetgen/bng-mac/Perl2/Aux2/runBNG.pl'
2023-07-25T18:18:59,171   adding 'bionetgen/bng-mac/Perl2/Aux2/test.pl'
2023-07-25T18:18:59,174   adding 'bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl'
2023-07-25T18:18:59,176   adding 'bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl'
2023-07-25T18:18:59,179   adding 'bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl'
2023-07-25T18:18:59,181   adding 'bionetgen/bng-mac/Perl2/Aux2/test_sub.pl'
2023-07-25T18:18:59,185   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt'
2023-07-25T18:18:59,188   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-07-25T18:18:59,191   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-07-25T18:18:59,194   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-07-25T18:18:59,197   adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-07-25T18:18:59,201   adding 'bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm'
2023-07-25T18:18:59,215   adding 'bionetgen/bng-mac/Perl2/Visualization/GML.pm'
2023-07-25T18:18:59,224   adding 'bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm'
2023-07-25T18:18:59,229   adding 'bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm'
2023-07-25T18:18:59,232   adding 'bionetgen/bng-mac/Perl2/Visualization/README'
2023-07-25T18:18:59,235   adding 'bionetgen/bng-mac/Perl2/Visualization/RINF.pm'
2023-07-25T18:18:59,241   adding 'bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm'
2023-07-25T18:18:59,244   adding 'bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm'
2023-07-25T18:18:59,263   adding 'bionetgen/bng-mac/Perl2/Visualization/Viz.pm'
2023-07-25T18:18:59,270   adding 'bionetgen/bng-mac/Perl2/Visualization/analyze.pl'
2023-07-25T18:18:59,274   adding 'bionetgen/bng-mac/Perl2/Visualization/readGML.pl'
2023-07-25T18:18:59,278   adding 'bionetgen/bng-mac/Perl2/Visualization/visualize.pl'
2023-07-25T18:18:59,290   adding 'bionetgen/bng-mac/Perl2/XML/TreePP.pm'
2023-07-25T18:18:59,935   adding 'bionetgen/bng-mac/bin/NFsim'
2023-07-25T18:19:00,581   adding 'bionetgen/bng-mac/bin/run_network'
2023-07-25T18:19:00,623   adding 'bionetgen/bng-mac/bin/sundials-config'
2023-07-25T18:19:00,628   adding 'bionetgen/bng-win/BNG2.pl'
2023-07-25T18:19:00,631   adding 'bionetgen/bng-win/VERSION'
2023-07-25T18:19:00,656   adding 'bionetgen/bng-win/Perl2/BNGAction.pm'
2023-07-25T18:19:00,660   adding 'bionetgen/bng-win/Perl2/BNGMessages.pm'
2023-07-25T18:19:00,684   adding 'bionetgen/bng-win/Perl2/BNGModel.pm'
2023-07-25T18:19:00,690   adding 'bionetgen/bng-win/Perl2/BNGOptions.pm'
2023-07-25T18:19:00,726   adding 'bionetgen/bng-win/Perl2/BNGOutput.pm'
2023-07-25T18:19:00,735   adding 'bionetgen/bng-win/Perl2/BNGUtils.pm'
2023-07-25T18:19:00,738   adding 'bionetgen/bng-win/Perl2/Cache.pm'
2023-07-25T18:19:00,742   adding 'bionetgen/bng-win/Perl2/CartesianProduct.pm'
2023-07-25T18:19:00,747   adding 'bionetgen/bng-win/Perl2/Compartment.pm'
2023-07-25T18:19:00,751   adding 'bionetgen/bng-win/Perl2/CompartmentList.pm'
2023-07-25T18:19:00,759   adding 'bionetgen/bng-win/Perl2/Component.pm'
2023-07-25T18:19:00,765   adding 'bionetgen/bng-win/Perl2/ComponentType.pm'
2023-07-25T18:19:00,769   adding 'bionetgen/bng-win/Perl2/Console.pm'
2023-07-25T18:19:00,772   adding 'bionetgen/bng-win/Perl2/EnergyPattern.pm'
2023-07-25T18:19:00,793   adding 'bionetgen/bng-win/Perl2/Expression.pm'
2023-07-25T18:19:00,801   adding 'bionetgen/bng-win/Perl2/Function.pm'
2023-07-25T18:19:00,812   adding 'bionetgen/bng-win/Perl2/HNauty.pm'
2023-07-25T18:19:00,815   adding 'bionetgen/bng-win/Perl2/MacroBNG2.pl'
2023-07-25T18:19:00,842   adding 'bionetgen/bng-win/Perl2/MacroBNGModel.pm'
2023-07-25T18:19:00,849   adding 'bionetgen/bng-win/Perl2/Map.pm'
2023-07-25T18:19:00,854   adding 'bionetgen/bng-win/Perl2/ModelWrapper.pm'
2023-07-25T18:19:00,860   adding 'bionetgen/bng-win/Perl2/Molecule.pm'
2023-07-25T18:19:00,866   adding 'bionetgen/bng-win/Perl2/MoleculeType.pm'
2023-07-25T18:19:00,870   adding 'bionetgen/bng-win/Perl2/MoleculeTypesList.pm'
2023-07-25T18:19:00,876   adding 'bionetgen/bng-win/Perl2/Observable.pm'
2023-07-25T18:19:00,880   adding 'bionetgen/bng-win/Perl2/Param.pm'
2023-07-25T18:19:00,889   adding 'bionetgen/bng-win/Perl2/ParamList.pm'
2023-07-25T18:19:00,892   adding 'bionetgen/bng-win/Perl2/Population.pm'
2023-07-25T18:19:00,895   adding 'bionetgen/bng-win/Perl2/PopulationList.pm'
2023-07-25T18:19:00,907   adding 'bionetgen/bng-win/Perl2/RateLaw.pm'
2023-07-25T18:19:00,915   adding 'bionetgen/bng-win/Perl2/RefineRule.pm'
2023-07-25T18:19:00,921   adding 'bionetgen/bng-win/Perl2/Rxn.pm'
2023-07-25T18:19:00,926   adding 'bionetgen/bng-win/Perl2/RxnList.pm'
2023-07-25T18:19:00,972   adding 'bionetgen/bng-win/Perl2/RxnRule.pm'
2023-07-25T18:19:00,980   adding 'bionetgen/bng-win/Perl2/SBMLMultiAux.pm'
2023-07-25T18:19:00,984   adding 'bionetgen/bng-win/Perl2/Species.pm'
2023-07-25T18:19:01,019   adding 'bionetgen/bng-win/Perl2/SpeciesGraph.pm'
2023-07-25T18:19:01,028   adding 'bionetgen/bng-win/Perl2/SpeciesList.pm'
2023-07-25T18:19:01,031   adding 'bionetgen/bng-win/Perl2/XMLReader.pm'
2023-07-25T18:19:01,035   adding 'bionetgen/bng-win/Perl2/auto_hpp.pl'
2023-07-25T18:19:01,040   adding 'bionetgen/bng-win/Perl2/diff_net.pl'
2023-07-25T18:19:01,046   adding 'bionetgen/bng-win/Perl2/sample_vars_2.pl'
2023-07-25T18:19:01,051   adding 'bionetgen/bng-win/Perl2/scan_var.pl'
2023-07-25T18:19:01,054   adding 'bionetgen/bng-win/Perl2/test_cartesianproduct.pl'
2023-07-25T18:19:01,057   adding 'bionetgen/bng-win/Perl2/verify.pl'
2023-07-25T18:19:01,062   adding 'bionetgen/bng-win/Perl2/Aux2/MakeBin.pl'
2023-07-25T18:19:01,064   adding 'bionetgen/bng-win/Perl2/Aux2/bnglstat.pl'
2023-07-25T18:19:01,067   adding 'bionetgen/bng-win/Perl2/Aux2/count_blocks.pl'
2023-07-25T18:19:01,070   adding 'bionetgen/bng-win/Perl2/Aux2/count_lines.pl'
2023-07-25T18:19:01,072   adding 'bionetgen/bng-win/Perl2/Aux2/countdown.pl'
2023-07-25T18:19:01,075   adding 'bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl'
2023-07-25T18:19:01,078   adding 'bionetgen/bng-win/Perl2/Aux2/express.pl'
2023-07-25T18:19:01,081   adding 'bionetgen/bng-win/Perl2/Aux2/express_main.pl'
2023-07-25T18:19:01,084   adding 'bionetgen/bng-win/Perl2/Aux2/group_size.pl'
2023-07-25T18:19:01,087   adding 'bionetgen/bng-win/Perl2/Aux2/runBNG.pl'
2023-07-25T18:19:01,090   adding 'bionetgen/bng-win/Perl2/Aux2/test.pl'
2023-07-25T18:19:01,093   adding 'bionetgen/bng-win/Perl2/Aux2/test_compartment.pl'
2023-07-25T18:19:01,095   adding 'bionetgen/bng-win/Perl2/Aux2/test_molorder.pl'
2023-07-25T18:19:01,098   adding 'bionetgen/bng-win/Perl2/Aux2/test_redirect.pl'
2023-07-25T18:19:01,101   adding 'bionetgen/bng-win/Perl2/Aux2/test_sub.pl'
2023-07-25T18:19:01,105   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt'
2023-07-25T18:19:01,108   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-07-25T18:19:01,111   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-07-25T18:19:01,114   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-07-25T18:19:01,117   adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-07-25T18:19:01,122   adding 'bionetgen/bng-win/Perl2/Visualization/ContactMap.pm'
2023-07-25T18:19:01,135   adding 'bionetgen/bng-win/Perl2/Visualization/GML.pm'
2023-07-25T18:19:01,145   adding 'bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm'
2023-07-25T18:19:01,151   adding 'bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm'
2023-07-25T18:19:01,154   adding 'bionetgen/bng-win/Perl2/Visualization/README'
2023-07-25T18:19:01,157   adding 'bionetgen/bng-win/Perl2/Visualization/RINF.pm'
2023-07-25T18:19:01,163   adding 'bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm'
2023-07-25T18:19:01,167   adding 'bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm'
2023-07-25T18:19:01,182   adding 'bionetgen/bng-win/Perl2/Visualization/Viz.pm'
2023-07-25T18:19:01,190   adding 'bionetgen/bng-win/Perl2/Visualization/analyze.pl'
2023-07-25T18:19:01,194   adding 'bionetgen/bng-win/Perl2/Visualization/readGML.pl'
2023-07-25T18:19:01,198   adding 'bionetgen/bng-win/Perl2/Visualization/visualize.pl'
2023-07-25T18:19:01,210   adding 'bionetgen/bng-win/Perl2/XML/TreePP.pm'
2023-07-25T18:19:02,060   adding 'bionetgen/bng-win/bin/NFsim.exe'
2023-07-25T18:19:02,131   adding 'bionetgen/bng-win/bin/cyggcc_s-seh-1.dll'
2023-07-25T18:19:02,799   adding 'bionetgen/bng-win/bin/cygstdc++-6.dll'
2023-07-25T18:19:04,136   adding 'bionetgen/bng-win/bin/cygwin1.dll'
2023-07-25T18:19:04,233   adding 'bionetgen/bng-win/bin/cygz.dll'
2023-07-25T18:19:04,540   adding 'bionetgen/bng-win/bin/cygzstd-1.dll'
2023-07-25T18:19:04,721   adding 'bionetgen/bng-win/bin/libgcc_s_seh-1.dll'
2023-07-25T18:19:05,426   adding 'bionetgen/bng-win/bin/libstdc++-6.dll'
2023-07-25T18:19:05,503   adding 'bionetgen/bng-win/bin/libwinpthread-1.dll'
2023-07-25T18:19:09,649   adding 'bionetgen/bng-win/bin/run_network.exe'
2023-07-25T18:19:09,903   adding 'bionetgen/bng-win/bin/sundials-config'
2023-07-25T18:19:09,908   adding 'bionetgen/core/__init__.py'
2023-07-25T18:19:09,911   adding 'bionetgen/core/defaults.py'
2023-07-25T18:19:09,915   adding 'bionetgen/core/exc.py'
2023-07-25T18:19:09,919   adding 'bionetgen/core/main.py'
2023-07-25T18:19:09,923   adding 'bionetgen/core/notebook.py'
2023-07-25T18:19:09,926   adding 'bionetgen/core/version.py'
2023-07-25T18:19:09,931   adding 'bionetgen/core/tools/__init__.py'
2023-07-25T18:19:09,935   adding 'bionetgen/core/tools/cli.py'
2023-07-25T18:19:09,943   adding 'bionetgen/core/tools/gdiff.py'
2023-07-25T18:19:09,948   adding 'bionetgen/core/tools/info.py'
2023-07-25T18:19:09,952   adding 'bionetgen/core/tools/plot.py'
2023-07-25T18:19:09,956   adding 'bionetgen/core/tools/result.py'
2023-07-25T18:19:09,960   adding 'bionetgen/core/tools/visualize.py'
2023-07-25T18:19:09,965   adding 'bionetgen/core/utils/__init__.py'
2023-07-25T18:19:09,969   adding 'bionetgen/core/utils/logging.py'
2023-07-25T18:19:09,975   adding 'bionetgen/core/utils/utils.py'
2023-07-25T18:19:09,979   adding 'bionetgen/modelapi/__init__.py'
2023-07-25T18:19:09,986   adding 'bionetgen/modelapi/blocks.py'
2023-07-25T18:19:09,991   adding 'bionetgen/modelapi/bngfile.py'
2023-07-25T18:19:09,996   adding 'bionetgen/modelapi/bngparser.py'
2023-07-25T18:19:10,001   adding 'bionetgen/modelapi/model.py'
2023-07-25T18:19:10,008   adding 'bionetgen/modelapi/pattern.py'
2023-07-25T18:19:10,013   adding 'bionetgen/modelapi/pattern_reader.py'
2023-07-25T18:19:10,016   adding 'bionetgen/modelapi/rulemod.py'
2023-07-25T18:19:10,019   adding 'bionetgen/modelapi/runner.py'
2023-07-25T18:19:10,024   adding 'bionetgen/modelapi/structs.py'
2023-07-25T18:19:10,032   adding 'bionetgen/modelapi/xmlparsers.py'
2023-07-25T18:19:10,036   adding 'bionetgen/network/__init__.py'
2023-07-25T18:19:10,041   adding 'bionetgen/network/blocks.py'
2023-07-25T18:19:10,045   adding 'bionetgen/network/network.py'
2023-07-25T18:19:10,048   adding 'bionetgen/network/networkparser.py'
2023-07-25T18:19:10,052   adding 'bionetgen/network/structs.py'
2023-07-25T18:19:10,056   adding 'bionetgen/simulator/__init__.py'
2023-07-25T18:19:10,059   adding 'bionetgen/simulator/bngsimulator.py'
2023-07-25T18:19:10,063   adding 'bionetgen/simulator/csimulator.py'
2023-07-25T18:19:10,066   adding 'bionetgen/simulator/librrsimulator.py'
2023-07-25T18:19:10,069   adding 'bionetgen/simulator/simulators.py'
2023-07-25T18:19:10,074   adding 'bionetgen-0.8.1.dist-info/LICENSE'
2023-07-25T18:19:10,078   adding 'bionetgen-0.8.1.dist-info/METADATA'
2023-07-25T18:19:10,080   adding 'bionetgen-0.8.1.dist-info/WHEEL'
2023-07-25T18:19:10,082   adding 'bionetgen-0.8.1.dist-info/entry_points.txt'
2023-07-25T18:19:10,084   adding 'bionetgen-0.8.1.dist-info/top_level.txt'
2023-07-25T18:19:10,097   adding 'bionetgen-0.8.1.dist-info/RECORD'
2023-07-25T18:19:10,493   removing build/bdist.linux-armv7l/wheel
2023-07-25T18:19:10,862   Building wheel for bionetgen (setup.py): finished with status 'done'
2023-07-25T18:19:11,201   Created wheel for bionetgen: filename=bionetgen-0.8.1-py3-none-any.whl size=11214525 sha256=8f7299d46a5e408f46b306dcdbd75bfcdbbe4200195f84c035a24154009459f0
2023-07-25T18:19:11,204   Stored in directory: /tmp/pip-ephem-wheel-cache-0onipaty/wheels/48/39/83/7bd476aea3b6bd74525986ae360c705858963726fbd4d3a4f6
2023-07-25T18:19:11,272 Successfully built bionetgen
2023-07-25T18:19:12,113 Removed build tracker: '/tmp/pip-build-tracker-q2sf0apd'