2023-07-25T18:15:52,422 Created temporary directory: /tmp/pip-build-tracker-q2sf0apd
2023-07-25T18:15:52,425 Initialized build tracking at /tmp/pip-build-tracker-q2sf0apd
2023-07-25T18:15:52,425 Created build tracker: /tmp/pip-build-tracker-q2sf0apd
2023-07-25T18:15:52,426 Entered build tracker: /tmp/pip-build-tracker-q2sf0apd
2023-07-25T18:15:52,427 Created temporary directory: /tmp/pip-wheel-xuw2rv5t
2023-07-25T18:15:52,435 Created temporary directory: /tmp/pip-ephem-wheel-cache-0onipaty
2023-07-25T18:15:52,488 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-07-25T18:15:52,496 2 location(s) to search for versions of bionetgen:
2023-07-25T18:15:52,496 * https://pypi.org/simple/bionetgen/
2023-07-25T18:15:52,496 * https://www.piwheels.org/simple/bionetgen/
2023-07-25T18:15:52,497 Fetching project page and analyzing links: https://pypi.org/simple/bionetgen/
2023-07-25T18:15:52,498 Getting page https://pypi.org/simple/bionetgen/
2023-07-25T18:15:52,502 Found index url https://pypi.org/simple/
2023-07-25T18:15:52,689 Fetched page https://pypi.org/simple/bionetgen/ as application/vnd.pypi.simple.v1+json
2023-07-25T18:15:52,730 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e6/b3/a893d46a588ca1612b6a59a6fafb21167eaa80126f5f03372bd14f44db1f/bionetgen-0.2.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,731 Found link https://files.pythonhosted.org/packages/8b/77/a1973826370f86755f3c754fd614079c30db123c2f3c84014426d43de1ab/bionetgen-0.2.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.2.7
2023-07-25T18:15:52,732 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/a8/9e/e58935cc85ce97feecf4795cd73318eda7cc19160570d679e8a69893d761/bionetgen-0.2.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,732 Found link https://files.pythonhosted.org/packages/60/97/da115de68d2cb06335a25ca27c1d0f51fb6995bfb0edecf703c7c9d566e2/bionetgen-0.2.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.2.9
2023-07-25T18:15:52,733 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/fd/58/eb48ea64b8add145ab85986be2d1f5cb803c157d96324326f4552c589d25/bionetgen-0.3.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,733 Found link https://files.pythonhosted.org/packages/4a/b9/b02e5302ce90ae25d31669953809f2f2dc89cfb6a7929bc630f322229080/bionetgen-0.3.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.0
2023-07-25T18:15:52,734 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/8d/02/a62cbc6b5b039fe62199dd264387be08c163bf3de4b6adc9ba596ef82bd8/bionetgen-0.3.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,735 Found link https://files.pythonhosted.org/packages/5f/1c/1265d1a89b35dee83def238b274a4650ef653b3a325c9399e0c7072bec94/bionetgen-0.3.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.1
2023-07-25T18:15:52,735 Found link https://files.pythonhosted.org/packages/bc/0a/12b0cc2800c6027302f8b21d31a8909a7c06000f5ce4d9e73288fd9cc442/bionetgen-0.3.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.2
2023-07-25T18:15:52,736 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/10/70/f78c30f58893583b15e305d4d5f575998b8aa1b0d8bddd50c40bc20d4c72/bionetgen-0.3.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,737 Found link https://files.pythonhosted.org/packages/1f/9b/9489a0427b6fa0dcebfc86cb8b97d1e6803102baa0fefd533b0ccd97489c/bionetgen-0.3.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.3
2023-07-25T18:15:52,737 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/88/39/cfe6e91621c8eb0ca89d3c3c18f58a638b96edbcd66b18cdd3c3329d4459/bionetgen-0.3.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,738 Found link https://files.pythonhosted.org/packages/57/eb/855cb6b223f38bc06c320c14271cfa488e8f5582efc8b18d7d544d707822/bionetgen-0.3.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.4
2023-07-25T18:15:52,739 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3f/44/002d294451ca19921ad37f4b240620ad6ec699a3e13e980d80675a8c4faf/bionetgen-0.3.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,739 Found link https://files.pythonhosted.org/packages/d1/a2/52c81f4a2d37efcde57207ce623f38304972421ffdd4596a196816e1a2f2/bionetgen-0.3.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.5
2023-07-25T18:15:52,740 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/96/0f/2c3b6d03dc5814093bd899957a3b62606cd17b984e8e59f576fcad6596f4/bionetgen-0.3.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,740 Found link https://files.pythonhosted.org/packages/da/ae/cad793910aefa7820df164f2f98d73358c29e3cec6c4e71462cadf2447bb/bionetgen-0.3.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.7
2023-07-25T18:15:52,741 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/17/74/1c26bb9b930f829068ee42bc4d2442f93a9e3a76ebbc7d3d597d60bd9740/bionetgen-0.3.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,742 Found link https://files.pythonhosted.org/packages/c0/92/b7500051998b3edb5f2d95edecdbcea753552fd820009f6783b050cab687/bionetgen-0.3.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.8
2023-07-25T18:15:52,742 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/56/dd/090c573b908095d993c9aa5950a9b159fb212fae38e883f9b1a0ac196d4a/bionetgen-0.3.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,743 Found link https://files.pythonhosted.org/packages/b2/7c/b24930fdf77b18acde646de235225fe9a514423e86259ea00bd058c1f042/bionetgen-0.3.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.3.9
2023-07-25T18:15:52,743 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/15/44/132c8c88f5960ce1c3221f9f6c1d4fb33a0fb65a11f7b5446d146f4ea5a4/bionetgen-0.4.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,744 Found link https://files.pythonhosted.org/packages/94/e8/0645b78778349e6e6c16db375db8c525b1955335f7d1ef596dbae0ea1699/bionetgen-0.4.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.0
2023-07-25T18:15:52,745 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/ee/30/387ec7efdcf880dd53cda89fb190781699106d5b879bdbd5a3b02581faf2/bionetgen-0.4.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,745 Found link https://files.pythonhosted.org/packages/62/d2/d5bf0bc0b9a4190c1910191c0b9a5e37d84bae9f02151e051f3ff499fba5/bionetgen-0.4.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.1
2023-07-25T18:15:52,746 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/81/d4/79f2d2a12bffb285e4f997950d06ee110b5f3bc27429927feb15ebe80171/bionetgen-0.4.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,746 Found link https://files.pythonhosted.org/packages/04/64/a0ae32a6426834a017a74389de629a1c5031221a173f7d6b46f239818ae6/bionetgen-0.4.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.2
2023-07-25T18:15:52,747 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e9/99/aefc24dbffd1b1a4c3ed22195566a4ae72097b3768acfc03b4d0770580c5/bionetgen-0.4.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,747 Found link https://files.pythonhosted.org/packages/e9/ce/ca95b1ebad09c1773bdc1c56143b419a71bed8cf54c245baf7a2a75876b1/bionetgen-0.4.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.3
2023-07-25T18:15:52,748 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/cd/89/1967b9731f3eb80ca652c6940a7e81d42c3efef15e6ee58ddcb98dd55fa8/bionetgen-0.4.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,749 Found link https://files.pythonhosted.org/packages/9b/a3/bd276dc1574ca60bc312570909df86b0466f4e5d3408b63a38e05403f2f2/bionetgen-0.4.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.4
2023-07-25T18:15:52,749 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/b0/b3/93a6053a7574695e325daf76f182bfd6d53a0eea4e231fd6466e2716cabc/bionetgen-0.4.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,750 Found link https://files.pythonhosted.org/packages/aa/60/b4fba06e15f07edfd93184fa6f448008163f6488d77ae6dd7ff03412c51b/bionetgen-0.4.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.5
2023-07-25T18:15:52,751 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/20/3a/892d36557a3542ec72ebfe27cc3e0ec5fc239093c808b26d9946bbac45a8/bionetgen-0.4.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,751 Found link https://files.pythonhosted.org/packages/eb/c4/f214b38bb066528f18bdca03a7cb5a87689a1c847741db288e4c58b0d6e1/bionetgen-0.4.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.6
2023-07-25T18:15:52,752 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/7a/30/8ad58742429beca1ff92cc4837271beafd3c64f04914e78be76924a611b5/bionetgen-0.4.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,752 Found link https://files.pythonhosted.org/packages/72/13/7d564b2d4e26b0ec8a2aabc5389b4a7250cf90f862d1e0b5625ff4ffb5d6/bionetgen-0.4.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.7
2023-07-25T18:15:52,753 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/9f/5b/f8201d39e1848e21a572f965641180ebbb7666f44277c2a7abda36413bbf/bionetgen-0.4.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,753 Found link https://files.pythonhosted.org/packages/8b/5d/582060cd4441f40df5c4a64ff15d47b0f920ca3ddd5200cb9a32f9b6dab8/bionetgen-0.4.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.4.9
2023-07-25T18:15:52,754 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/54/13/93321ca08c364aebe604a692d6d7a47f373689fb16494654af8646321ec2/bionetgen-0.5.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,755 Found link https://files.pythonhosted.org/packages/93/d2/260c4e0abc5322872769578be15df290059ded1787f2cea48b689073d484/bionetgen-0.5.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.0
2023-07-25T18:15:52,755 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3a/77/3418b3c243701669785563a54eb9db56af6c03fc7a83abba87a7dfab2931/bionetgen-0.5.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,756 Found link https://files.pythonhosted.org/packages/4c/f0/0db11d911ca3e38720e5b6d872066c598460f5678376972e3593c68243b8/bionetgen-0.5.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.1
2023-07-25T18:15:52,756 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/a3/b2/ddb74a7f7ecee97aafabeeb8ab7d41d4af1d68b39fae641b03ef9cea5a96/bionetgen-0.5.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,757 Found link https://files.pythonhosted.org/packages/7d/53/b3a1d665d18f511a7cf86421e910fa91deaac023b11e75f2a8a1c32b464a/bionetgen-0.5.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.2
2023-07-25T18:15:52,758 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e8/e2/848deecac8ecb2565313b309a9ac4a14a209e64c9a6c89c3181cb85ef143/bionetgen-0.5.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,758 Found link https://files.pythonhosted.org/packages/70/44/07950150920c76149dad62ff99027fe67bb13e08ef11754c6be8997d752f/bionetgen-0.5.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.3
2023-07-25T18:15:52,759 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/7c/a4/fb5e9dc0a723d7d19fd6baa3bb8d3a79b74bbe9b7cd7e7daea7ed74e7ad8/bionetgen-0.5.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,759 Found link https://files.pythonhosted.org/packages/a2/41/06462bb4718e471413356973eef816f15fa84463affcaec3c9c882f2e844/bionetgen-0.5.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.4
2023-07-25T18:15:52,760 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/dd/ff/db5c2ed4c02db6b677682a92419a0fc6b9a281d766e00f8ba18b01bfdedd/bionetgen-0.5.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,761 Found link https://files.pythonhosted.org/packages/99/a6/dbea265d5bad01626c8fafdb1c7b34abbe2bfdbce697116346c7e05be206/bionetgen-0.5.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.5
2023-07-25T18:15:52,761 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/0d/09/96950b046f8acbf08f71b08f107a7b060858867ca74ae2cb208aba504649/bionetgen-0.5.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,762 Found link https://files.pythonhosted.org/packages/c4/48/9067dd4bcf799ed37562124658290f8bccbd2b94a54498ca8ab2be89ae4e/bionetgen-0.5.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.6
2023-07-25T18:15:52,763 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/47/3a/fc7fffda69e350e900917813c956941c697096ca54d12868b3f7e9d6e1e6/bionetgen-0.5.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,763 Found link https://files.pythonhosted.org/packages/81/b0/b572a13c97bcfc904c656837e61614e1b018e2bc8e4ebec7155e2df2ad0d/bionetgen-0.5.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.7
2023-07-25T18:15:52,764 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/bd/82/9d96eaa801581c1c19d40fdaa80136ac543e6765bea7eb775742239130e6/bionetgen-0.5.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,764 Found link https://files.pythonhosted.org/packages/a1/2e/ea071ba50159f84544916161cc35d432a8b1b609c6a70c37f5f900d0075a/bionetgen-0.5.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.8
2023-07-25T18:15:52,765 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/60/a1/ebcf584d1fb40fdebfaefe8a73f582f8752c1e70aa53242c7663548b88e5/bionetgen-0.5.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,766 Found link https://files.pythonhosted.org/packages/f3/2e/6d2741c35609abc2c1ff257775a8e691e52c8a050a737fc20bf2c46ec2f7/bionetgen-0.5.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.5.9
2023-07-25T18:15:52,766 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/d5/98/5b2d3c72e76bf01f7ed0e6d900831deda233bc534fbe62d9369dd56ecb4b/bionetgen-0.6.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,767 Found link https://files.pythonhosted.org/packages/3c/0a/5b9ca15324bccb719922a7ad179c87b1ef6cf80ba4d4a53ddce2ee20ccd8/bionetgen-0.6.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.0
2023-07-25T18:15:52,767 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/89/21/11d94b32c433fa2c0fcfe1e1813cbc3194ac724ae9453118674d7a76aae8/bionetgen-0.6.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,768 Found link https://files.pythonhosted.org/packages/57/96/9afd7e6fd8a38dfae0b71563e4a1c64a7b2281364d0e216746026b0b0a97/bionetgen-0.6.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.1
2023-07-25T18:15:52,769 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f2/a1/e0c4f5d41c5df4c40bcc78b178d4e46fecbb944eb0e8017ad01deec1f290/bionetgen-0.6.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,769 Found link https://files.pythonhosted.org/packages/38/07/171434cc308be745cb011476b4cb92ee86f26dd55502b3eb05986d9cf474/bionetgen-0.6.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.6.2
2023-07-25T18:15:52,770 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/14/96/c88b0ee82fe35836ed6bde1bd400476e44fb01927e4326d5231326bb8460/bionetgen-0.7.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,770 Found link https://files.pythonhosted.org/packages/c1/72/8d3b7365a54791c3e141066c6c627788a5426ad8716f19071dcc02a4b576/bionetgen-0.7.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.0
2023-07-25T18:15:52,771 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/c9/32/18786448b30d20628937555e27ed9256d87b365732ac2aadd4ef2af4547c/bionetgen-0.7.2-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,772 Found link https://files.pythonhosted.org/packages/69/3d/003c54c5f11e6a7a1468399fb9f2feaba8379461f8a7ab3a68ba287a8216/bionetgen-0.7.2.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.2
2023-07-25T18:15:52,772 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/1c/50/d7d1d60c01d714bfbd70d513f895e85477ca2659455f98a2581e91b85029/bionetgen-0.7.3-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,773 Found link https://files.pythonhosted.org/packages/2e/33/74910edea6ba1c79332710d5be1e720550ad6ff928c95d52a034166c8e6d/bionetgen-0.7.3.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.3
2023-07-25T18:15:52,773 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f3/93/c9d95072013866fa911ffd7e380dde1ff196844d422c720bc2cf9ebb43a2/bionetgen-0.7.4-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,774 Found link https://files.pythonhosted.org/packages/b4/0f/1ab0c5f86952c7272c9c9d0d216e5065182407e2eec897190b4ac2c1fe6e/bionetgen-0.7.4.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.4
2023-07-25T18:15:52,775 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/81/21/0b46f621d7d53d65b7f4b0b9eacd234bd6d8647c3d36f052ba9edd4648e8/bionetgen-0.7.5-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,775 Found link https://files.pythonhosted.org/packages/3e/37/9665cc48735cee43249ef7e91337c1381b48021edce9819e0bb61238f0c7/bionetgen-0.7.5.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.5
2023-07-25T18:15:52,776 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3f/f1/48b4ab9227841b75a330a7458e2d926626b55529413da4f1ca1b695d1008/bionetgen-0.7.6-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,776 Found link https://files.pythonhosted.org/packages/d4/c2/051f5d6fcb049e83907642eee8aed23e00ae28847b9d0df56bcca1272e5e/bionetgen-0.7.6.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.6
2023-07-25T18:15:52,777 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/5f/a1/b2d435566685eed5d1fdc9e496523adae6ddc8febf4b3717d2ca8d64cd1e/bionetgen-0.7.7-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,777 Found link https://files.pythonhosted.org/packages/4f/4a/d6169577fda44126a077cb84f4c9bf988fa006148705aac87124d9b816ff/bionetgen-0.7.7.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.7
2023-07-25T18:15:52,778 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/e4/0b/241722c296042ce1f269ea525e66cf3a61fed88e2c00848aafa663015422/bionetgen-0.7.8-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,779 Found link https://files.pythonhosted.org/packages/fb/ea/3af479ef041ee5501a88dea3a3749e1de0b1cf376444a50c0ec561d833f6/bionetgen-0.7.8.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.8
2023-07-25T18:15:52,779 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/f2/e1/12113d90c0acfd3c257dc9d4b133152e47628d3514e4412ef951a1cc9e17/bionetgen-0.7.9-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,780 Found link https://files.pythonhosted.org/packages/93/f4/23d7e296735bc5b5e4149d1c7167809d68cb669965351d441d6bac6f4bed/bionetgen-0.7.9.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.7.9
2023-07-25T18:15:52,780 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/5f/80/922003cc48c2eaa32a0722102667ac51a5e89216c507a1dbeaafd83120dc/bionetgen-0.8.0-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,781 Found link https://files.pythonhosted.org/packages/4d/1e/32dd08837b4a182b364a9d961d7a36dbd953eb68f98600c3b93fe8d1b9ca/bionetgen-0.8.0.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.8.0
2023-07-25T18:15:52,782 Skipping link: No binaries permitted for bionetgen: https://files.pythonhosted.org/packages/3e/53/0ac1b407d5c5f5f2ec96b01b61be58d0a1199b903fcc4285795ace19fb60/bionetgen-0.8.1-py3-none-any.whl (from https://pypi.org/simple/bionetgen/)
2023-07-25T18:15:52,782 Found link https://files.pythonhosted.org/packages/01/4b/bb43588c02bd3fa4ca37d11500043b13d5e70c09c94679fdbf920fc4fc3e/bionetgen-0.8.1.tar.gz (from https://pypi.org/simple/bionetgen/), version: 0.8.1
2023-07-25T18:15:52,783 Fetching project page and analyzing links: https://www.piwheels.org/simple/bionetgen/
2023-07-25T18:15:52,784 Getting page https://www.piwheels.org/simple/bionetgen/
2023-07-25T18:15:52,786 Found index url https://www.piwheels.org/simple/
2023-07-25T18:15:53,052 Fetched page https://www.piwheels.org/simple/bionetgen/ as text/html
2023-07-25T18:15:53,060 Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.8.0-py3-none-any.whl#sha256=1892489ca2c73760c8a88d4651fefe6bfa9f0d2174d8376cfee881268b0b4d3d (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,060 Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.5-py3-none-any.whl#sha256=a940a7f8be7f8b9f9208d837c2530709df723e59fdce7f729104b124537048ef (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,061 Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.4-py3-none-any.whl#sha256=1363d4463b7d016634f411e5714484ab005566c6194146f8e28389fa80d6bd8e (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,062 Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.3-py3-none-any.whl#sha256=6406b457ade36823c9ed9f97e2ef2f80c0cd78826b28346f869cff7726c0ce14 (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,062 Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.1-py3-none-any.whl#sha256=fca4945c5fdf63233bc2923b1ce64c4e6069f15abb0581f7016aab3e31a99040 (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,062 Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.3.0-py3-none-any.whl#sha256=6edb99b707a5cfd75433f906e9d28f809e31110074fc71c3d5d0422be4ba5df2 (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,063 Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.2.9-py3-none-any.whl#sha256=22fc780a6e557c20a3e8bbe6192ef53fdec8ea5376bc17125dae1b50a1efec1d (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,063 Skipping link: No binaries permitted for bionetgen: https://www.piwheels.org/simple/bionetgen/bionetgen-0.2.7-py3-none-any.whl#sha256=ce9ef4a22cdb47a02688c4e132e24be6b66f4ffd3594b44ed0746df961106db1 (from https://www.piwheels.org/simple/bionetgen/)
2023-07-25T18:15:53,064 Skipping link: not a file: https://www.piwheels.org/simple/bionetgen/
2023-07-25T18:15:53,065 Skipping link: not a file: https://pypi.org/simple/bionetgen/
2023-07-25T18:15:53,116 Given no hashes to check 1 links for project 'bionetgen': discarding no candidates
2023-07-25T18:15:53,148 Collecting bionetgen==0.8.1
2023-07-25T18:15:53,152 Created temporary directory: /tmp/pip-unpack-izhkb_ew
2023-07-25T18:15:53,348 Downloading bionetgen-0.8.1.tar.gz (11.0 MB)
2023-07-25T18:16:01,939 Added bionetgen==0.8.1 from https://files.pythonhosted.org/packages/01/4b/bb43588c02bd3fa4ca37d11500043b13d5e70c09c94679fdbf920fc4fc3e/bionetgen-0.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-q2sf0apd'
2023-07-25T18:16:01,942 Running setup.py (path:/tmp/pip-wheel-xuw2rv5t/bionetgen_6c83726988e745f996c6b437f9910893/setup.py) egg_info for package bionetgen
2023-07-25T18:16:01,944 Created temporary directory: /tmp/pip-pip-egg-info-4yuw0wnk
2023-07-25T18:16:01,944 Preparing metadata (setup.py): started
2023-07-25T18:16:01,946 Running command python setup.py egg_info
2023-07-25T18:16:05,759 Defaulting to user installation because normal site-packages is not writeable
2023-07-25T18:16:06,590 Requirement already satisfied: numpy in /usr/local/lib/python3.7/dist-packages (1.21.4)
2023-07-25T18:16:11,748 [notice] A new release of pip is available: 23.1.2 -> 23.2
2023-07-25T18:16:11,749 [notice] To update, run: python3 -m pip install --upgrade pip
2023-07-25T18:17:23,612 running egg_info
2023-07-25T18:17:23,618 creating /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info
2023-07-25T18:17:23,695 writing /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/PKG-INFO
2023-07-25T18:17:23,702 writing dependency_links to /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/dependency_links.txt
2023-07-25T18:17:23,706 writing entry points to /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/entry_points.txt
2023-07-25T18:17:23,709 writing requirements to /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/requires.txt
2023-07-25T18:17:23,712 writing top-level names to /tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/top_level.txt
2023-07-25T18:17:23,716 writing manifest file '/tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:17:23,987 reading manifest file '/tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:17:23,991 reading manifest template 'MANIFEST.in'
2023-07-25T18:17:23,994 warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects
...
2023-07-25T18:17:23,995 warning: manifest_maker: MANIFEST.in, line 2: 'recursive-include' expects ...
2023-07-25T18:17:24,234 adding license file 'LICENSE'
2023-07-25T18:17:24,272 writing manifest file '/tmp/pip-pip-egg-info-4yuw0wnk/bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:17:24,412 Preparing metadata (setup.py): finished with status 'done'
2023-07-25T18:17:24,425 Source in /tmp/pip-wheel-xuw2rv5t/bionetgen_6c83726988e745f996c6b437f9910893 has version 0.8.1, which satisfies requirement bionetgen==0.8.1 from https://files.pythonhosted.org/packages/01/4b/bb43588c02bd3fa4ca37d11500043b13d5e70c09c94679fdbf920fc4fc3e/bionetgen-0.8.1.tar.gz
2023-07-25T18:17:24,427 Removed bionetgen==0.8.1 from https://files.pythonhosted.org/packages/01/4b/bb43588c02bd3fa4ca37d11500043b13d5e70c09c94679fdbf920fc4fc3e/bionetgen-0.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-q2sf0apd'
2023-07-25T18:17:24,439 Created temporary directory: /tmp/pip-unpack-6aa46qnv
2023-07-25T18:17:24,440 Building wheels for collected packages: bionetgen
2023-07-25T18:17:24,449 Created temporary directory: /tmp/pip-wheel-0_afdub5
2023-07-25T18:17:24,450 Building wheel for bionetgen (setup.py): started
2023-07-25T18:17:24,452 Destination directory: /tmp/pip-wheel-0_afdub5
2023-07-25T18:17:24,452 Running command python setup.py bdist_wheel
2023-07-25T18:17:28,453 Defaulting to user installation because normal site-packages is not writeable
2023-07-25T18:17:29,358 Requirement already satisfied: numpy in /usr/local/lib/python3.7/dist-packages (1.21.4)
2023-07-25T18:17:34,566 [notice] A new release of pip is available: 23.1.2 -> 23.2
2023-07-25T18:17:34,567 [notice] To update, run: python3 -m pip install --upgrade pip
2023-07-25T18:18:46,326 running bdist_wheel
2023-07-25T18:18:47,164 running build
2023-07-25T18:18:47,165 running build_py
2023-07-25T18:18:47,250 creating build
2023-07-25T18:18:47,251 creating build/lib
2023-07-25T18:18:47,252 creating build/lib/bionetgen
2023-07-25T18:18:47,254 copying bionetgen/main.py -> build/lib/bionetgen
2023-07-25T18:18:47,259 copying bionetgen/__init__.py -> build/lib/bionetgen
2023-07-25T18:18:47,264 creating build/lib/bionetgen/network
2023-07-25T18:18:47,266 copying bionetgen/network/structs.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,271 copying bionetgen/network/__init__.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,275 copying bionetgen/network/network.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,279 copying bionetgen/network/blocks.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,284 copying bionetgen/network/networkparser.py -> build/lib/bionetgen/network
2023-07-25T18:18:47,290 creating build/lib/bionetgen/modelapi
2023-07-25T18:18:47,292 copying bionetgen/modelapi/structs.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,297 copying bionetgen/modelapi/__init__.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,301 copying bionetgen/modelapi/bngparser.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,306 copying bionetgen/modelapi/pattern_reader.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,311 copying bionetgen/modelapi/xmlparsers.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,317 copying bionetgen/modelapi/runner.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,320 copying bionetgen/modelapi/blocks.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,326 copying bionetgen/modelapi/model.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,331 copying bionetgen/modelapi/bngfile.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,335 copying bionetgen/modelapi/pattern.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,340 copying bionetgen/modelapi/rulemod.py -> build/lib/bionetgen/modelapi
2023-07-25T18:18:47,345 creating build/lib/bionetgen/simulator
2023-07-25T18:18:47,347 copying bionetgen/simulator/__init__.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,351 copying bionetgen/simulator/csimulator.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,355 copying bionetgen/simulator/bngsimulator.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,359 copying bionetgen/simulator/simulators.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,363 copying bionetgen/simulator/librrsimulator.py -> build/lib/bionetgen/simulator
2023-07-25T18:18:47,369 creating build/lib/bionetgen/atomizer
2023-07-25T18:18:47,371 copying bionetgen/atomizer/libsbml2bngl.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,380 copying bionetgen/atomizer/contextAnalyzer.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,385 copying bionetgen/atomizer/__init__.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,388 copying bionetgen/atomizer/sbmlTranslator.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,393 copying bionetgen/atomizer/contactMap.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,398 copying bionetgen/atomizer/bngModel.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,406 copying bionetgen/atomizer/parseAnnotation.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,410 copying bionetgen/atomizer/sbml2json.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,415 copying bionetgen/atomizer/sbml2bngl.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,429 copying bionetgen/atomizer/biogrid.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,433 copying bionetgen/atomizer/atomizeTool.py -> build/lib/bionetgen/atomizer
2023-07-25T18:18:47,439 creating build/lib/bionetgen/core
2023-07-25T18:18:47,441 copying bionetgen/core/notebook.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,445 copying bionetgen/core/main.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,450 copying bionetgen/core/exc.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,454 copying bionetgen/core/version.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,457 copying bionetgen/core/__init__.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,460 copying bionetgen/core/defaults.py -> build/lib/bionetgen/core
2023-07-25T18:18:47,466 creating build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,467 copying bionetgen/atomizer/utils/annotationExtender.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,472 copying bionetgen/atomizer/utils/__init__.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,475 copying bionetgen/atomizer/utils/annotationDeletion.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,480 copying bionetgen/atomizer/utils/modelComparison.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,484 copying bionetgen/atomizer/utils/util.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,489 copying bionetgen/atomizer/utils/consoleCommands.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,492 copying bionetgen/atomizer/utils/structures.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,498 copying bionetgen/atomizer/utils/readBNGXML.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,503 copying bionetgen/atomizer/utils/extractAtomic.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,507 copying bionetgen/atomizer/utils/nameNormalizer.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,511 copying bionetgen/atomizer/utils/annotationResolver.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,515 copying bionetgen/atomizer/utils/annotationComparison.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,519 copying bionetgen/atomizer/utils/annotationExtractor.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,524 copying bionetgen/atomizer/utils/pathwaycommons.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,529 copying bionetgen/atomizer/utils/smallStructures.py -> build/lib/bionetgen/atomizer/utils
2023-07-25T18:18:47,536 creating build/lib/bionetgen/atomizer/merging
2023-07-25T18:18:47,538 copying bionetgen/atomizer/merging/namingDatabase.py -> build/lib/bionetgen/atomizer/merging
2023-07-25T18:18:47,543 copying bionetgen/atomizer/merging/__init__.py -> build/lib/bionetgen/atomizer/merging
2023-07-25T18:18:47,546 copying bionetgen/atomizer/merging/compareNamingConventions.py -> build/lib/bionetgen/atomizer/merging
2023-07-25T18:18:47,551 creating build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,552 copying bionetgen/atomizer/atomizer/__init__.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,556 copying bionetgen/atomizer/atomizer/analyzeSBML.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,566 copying bionetgen/atomizer/atomizer/analyzeRDF.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,570 copying bionetgen/atomizer/atomizer/detectOntology.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,575 copying bionetgen/atomizer/atomizer/atomizationAux.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,580 copying bionetgen/atomizer/atomizer/moleculeCreation.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,588 copying bionetgen/atomizer/atomizer/atomizerUtils.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,592 copying bionetgen/atomizer/atomizer/resolveSCT.py -> build/lib/bionetgen/atomizer/atomizer
2023-07-25T18:18:47,603 creating build/lib/bionetgen/atomizer/writer
2023-07-25T18:18:47,605 copying bionetgen/atomizer/writer/__init__.py -> build/lib/bionetgen/atomizer/writer
2023-07-25T18:18:47,608 copying bionetgen/atomizer/writer/bnglWriter.py -> build/lib/bionetgen/atomizer/writer
2023-07-25T18:18:47,615 creating build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,617 copying bionetgen/atomizer/rulifier/__init__.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,620 copying bionetgen/atomizer/rulifier/componentGroups.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,626 copying bionetgen/atomizer/rulifier/compareModels.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,630 copying bionetgen/atomizer/rulifier/stateTransitionDiagram.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,635 copying bionetgen/atomizer/rulifier/stdgraph.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,639 copying bionetgen/atomizer/rulifier/parameterExtraction.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,644 copying bionetgen/atomizer/rulifier/postAnalysis.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,650 copying bionetgen/atomizer/rulifier/arial10.py -> build/lib/bionetgen/atomizer/rulifier
2023-07-25T18:18:47,655 creating build/lib/bionetgen/core/utils
2023-07-25T18:18:47,657 copying bionetgen/core/utils/logging.py -> build/lib/bionetgen/core/utils
2023-07-25T18:18:47,662 copying bionetgen/core/utils/__init__.py -> build/lib/bionetgen/core/utils
2023-07-25T18:18:47,665 copying bionetgen/core/utils/utils.py -> build/lib/bionetgen/core/utils
2023-07-25T18:18:47,672 creating build/lib/bionetgen/core/tools
2023-07-25T18:18:47,674 copying bionetgen/core/tools/gdiff.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,679 copying bionetgen/core/tools/visualize.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,684 copying bionetgen/core/tools/__init__.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,688 copying bionetgen/core/tools/plot.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,691 copying bionetgen/core/tools/info.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,696 copying bionetgen/core/tools/cli.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,700 copying bionetgen/core/tools/result.py -> build/lib/bionetgen/core/tools
2023-07-25T18:18:47,704 running egg_info
2023-07-25T18:18:47,878 writing bionetgen.egg-info/PKG-INFO
2023-07-25T18:18:47,882 writing dependency_links to bionetgen.egg-info/dependency_links.txt
2023-07-25T18:18:47,886 writing entry points to bionetgen.egg-info/entry_points.txt
2023-07-25T18:18:47,889 writing requirements to bionetgen.egg-info/requires.txt
2023-07-25T18:18:47,892 writing top-level names to bionetgen.egg-info/top_level.txt
2023-07-25T18:18:48,009 reading manifest file 'bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:18:48,108 reading manifest template 'MANIFEST.in'
2023-07-25T18:18:48,110 warning: manifest_maker: MANIFEST.in, line 1: 'recursive-include' expects ...
2023-07-25T18:18:48,111 warning: manifest_maker: MANIFEST.in, line 2: 'recursive-include' expects ...
2023-07-25T18:18:48,357 adding license file 'LICENSE'
2023-07-25T18:18:48,409 writing manifest file 'bionetgen.egg-info/SOURCES.txt'
2023-07-25T18:18:48,416 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'bionetgen.assets' is absent from the `packages` configuration.
2023-07-25T18:18:48,417 !!
2023-07-25T18:18:48,417 ********************************************************************************
2023-07-25T18:18:48,418 ############################
2023-07-25T18:18:48,418 # Package would be ignored #
2023-07-25T18:18:48,418 ############################
2023-07-25T18:18:48,418 Python recognizes 'bionetgen.assets' as an importable package[^1],
2023-07-25T18:18:48,419 but it is absent from setuptools' `packages` configuration.
2023-07-25T18:18:48,419 This leads to an ambiguous overall configuration. If you want to distribute this
2023-07-25T18:18:48,420 package, please make sure that 'bionetgen.assets' is explicitly added
2023-07-25T18:18:48,420 to the `packages` configuration field.
2023-07-25T18:18:48,421 Alternatively, you can also rely on setuptools' discovery methods
2023-07-25T18:18:48,421 (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-07-25T18:18:48,421 instead of `find_packages(...)`/`find:`).
2023-07-25T18:18:48,422 You can read more about "package discovery" on setuptools documentation page:
2023-07-25T18:18:48,423 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
2023-07-25T18:18:48,423 If you don't want 'bionetgen.assets' to be distributed and are
2023-07-25T18:18:48,423 already explicitly excluding 'bionetgen.assets' via
2023-07-25T18:18:48,424 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-07-25T18:18:48,424 you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-07-25T18:18:48,424 combination with a more fine grained `package-data` configuration.
2023-07-25T18:18:48,425 You can read more about "package data files" on setuptools documentation page:
2023-07-25T18:18:48,426 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html
2023-07-25T18:18:48,427 [^1]: For Python, any directory (with suitable naming) can be imported,
2023-07-25T18:18:48,427 even if it does not contain any `.py` files.
2023-07-25T18:18:48,427 On the other hand, currently there is no concept of package data
2023-07-25T18:18:48,428 directory, all directories are treated like packages.
2023-07-25T18:18:48,428 ********************************************************************************
2023-07-25T18:18:48,428 !!
2023-07-25T18:18:48,429 check.warn(importable)
2023-07-25T18:18:48,530 creating build/lib/bionetgen/assets
2023-07-25T18:18:48,532 copying bionetgen/assets/BNGVERSION -> build/lib/bionetgen/assets
2023-07-25T18:18:48,536 copying bionetgen/assets/VERSION -> build/lib/bionetgen/assets
2023-07-25T18:18:48,540 copying bionetgen/assets/bionetgen-temp.ipynb -> build/lib/bionetgen/assets
2023-07-25T18:18:48,546 copying bionetgen/assets/bionetgen.ipynb -> build/lib/bionetgen/assets
2023-07-25T18:18:48,552 copying bionetgen/assets/get_version_json.py -> build/lib/bionetgen/assets
2023-07-25T18:18:48,557 copying bionetgen/assets/ghapi.json -> build/lib/bionetgen/assets
2023-07-25T18:18:48,562 creating build/lib/bionetgen/bng-linux
2023-07-25T18:18:48,563 copying bionetgen/bng-linux/BNG2.pl -> build/lib/bionetgen/bng-linux
2023-07-25T18:18:48,570 copying bionetgen/bng-linux/VERSION -> build/lib/bionetgen/bng-linux
2023-07-25T18:18:48,576 creating build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,577 copying bionetgen/bng-linux/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,587 copying bionetgen/bng-linux/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,592 copying bionetgen/bng-linux/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,602 copying bionetgen/bng-linux/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,607 copying bionetgen/bng-linux/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,619 copying bionetgen/bng-linux/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,625 copying bionetgen/bng-linux/Perl2/Cache.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,629 copying bionetgen/bng-linux/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,634 copying bionetgen/bng-linux/Perl2/Compartment.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,639 copying bionetgen/bng-linux/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,645 copying bionetgen/bng-linux/Perl2/Component.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,651 copying bionetgen/bng-linux/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,656 copying bionetgen/bng-linux/Perl2/Console.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,661 copying bionetgen/bng-linux/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,667 copying bionetgen/bng-linux/Perl2/Expression.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,676 copying bionetgen/bng-linux/Perl2/Function.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,681 copying bionetgen/bng-linux/Perl2/HNauty.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,687 copying bionetgen/bng-linux/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,691 copying bionetgen/bng-linux/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,701 copying bionetgen/bng-linux/Perl2/Map.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,705 copying bionetgen/bng-linux/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,709 copying bionetgen/bng-linux/Perl2/Molecule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,715 copying bionetgen/bng-linux/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,721 copying bionetgen/bng-linux/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,726 copying bionetgen/bng-linux/Perl2/Observable.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,731 copying bionetgen/bng-linux/Perl2/Param.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,736 copying bionetgen/bng-linux/Perl2/ParamList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,742 copying bionetgen/bng-linux/Perl2/Population.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,746 copying bionetgen/bng-linux/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,750 copying bionetgen/bng-linux/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,757 copying bionetgen/bng-linux/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,764 copying bionetgen/bng-linux/Perl2/Rxn.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,769 copying bionetgen/bng-linux/Perl2/RxnList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,775 copying bionetgen/bng-linux/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,786 copying bionetgen/bng-linux/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,792 copying bionetgen/bng-linux/Perl2/Species.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,797 copying bionetgen/bng-linux/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,807 copying bionetgen/bng-linux/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,813 copying bionetgen/bng-linux/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,817 copying bionetgen/bng-linux/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,823 copying bionetgen/bng-linux/Perl2/diff_net.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,828 copying bionetgen/bng-linux/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,834 copying bionetgen/bng-linux/Perl2/scan_var.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,839 copying bionetgen/bng-linux/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,844 copying bionetgen/bng-linux/Perl2/verify.pl -> build/lib/bionetgen/bng-linux/Perl2
2023-07-25T18:18:48,850 creating build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,853 copying bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,857 copying bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,861 copying bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,865 copying bionetgen/bng-linux/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,869 copying bionetgen/bng-linux/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,873 copying bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,877 copying bionetgen/bng-linux/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,881 copying bionetgen/bng-linux/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,885 copying bionetgen/bng-linux/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,888 copying bionetgen/bng-linux/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,893 copying bionetgen/bng-linux/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,896 copying bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,900 copying bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,904 copying bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,908 copying bionetgen/bng-linux/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:48,912 creating build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,914 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,918 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,922 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,926 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,930 copying bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:48,934 creating build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,936 copying bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,940 copying bionetgen/bng-linux/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,948 copying bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,954 copying bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,959 copying bionetgen/bng-linux/Perl2/Visualization/README -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,963 copying bionetgen/bng-linux/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,967 copying bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,972 copying bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,976 copying bionetgen/bng-linux/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,984 copying bionetgen/bng-linux/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,989 copying bionetgen/bng-linux/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,993 copying bionetgen/bng-linux/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:48,998 creating build/lib/bionetgen/bng-linux/Perl2/XML
2023-07-25T18:18:48,999 copying bionetgen/bng-linux/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-linux/Perl2/XML
2023-07-25T18:18:49,006 creating build/lib/bionetgen/bng-linux/bin
2023-07-25T18:18:49,007 copying bionetgen/bng-linux/bin/NFsim -> build/lib/bionetgen/bng-linux/bin
2023-07-25T18:18:49,157 copying bionetgen/bng-linux/bin/run_network -> build/lib/bionetgen/bng-linux/bin
2023-07-25T18:18:49,304 copying bionetgen/bng-linux/bin/sundials-config -> build/lib/bionetgen/bng-linux/bin
2023-07-25T18:18:49,309 creating build/lib/bionetgen/bng-mac
2023-07-25T18:18:49,310 copying bionetgen/bng-mac/BNG2.pl -> build/lib/bionetgen/bng-mac
2023-07-25T18:18:49,316 copying bionetgen/bng-mac/VERSION -> build/lib/bionetgen/bng-mac
2023-07-25T18:18:49,321 creating build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,322 copying bionetgen/bng-mac/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,331 copying bionetgen/bng-mac/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,335 copying bionetgen/bng-mac/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,344 copying bionetgen/bng-mac/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,348 copying bionetgen/bng-mac/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,360 copying bionetgen/bng-mac/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,365 copying bionetgen/bng-mac/Perl2/Cache.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,369 copying bionetgen/bng-mac/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,374 copying bionetgen/bng-mac/Perl2/Compartment.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,379 copying bionetgen/bng-mac/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,383 copying bionetgen/bng-mac/Perl2/Component.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,389 copying bionetgen/bng-mac/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,393 copying bionetgen/bng-mac/Perl2/Console.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,399 copying bionetgen/bng-mac/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,404 copying bionetgen/bng-mac/Perl2/Expression.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,413 copying bionetgen/bng-mac/Perl2/Function.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,418 copying bionetgen/bng-mac/Perl2/HNauty.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,424 copying bionetgen/bng-mac/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,427 copying bionetgen/bng-mac/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,436 copying bionetgen/bng-mac/Perl2/Map.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,440 copying bionetgen/bng-mac/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,444 copying bionetgen/bng-mac/Perl2/Molecule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,450 copying bionetgen/bng-mac/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,455 copying bionetgen/bng-mac/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,460 copying bionetgen/bng-mac/Perl2/Observable.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,465 copying bionetgen/bng-mac/Perl2/Param.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,470 copying bionetgen/bng-mac/Perl2/ParamList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,476 copying bionetgen/bng-mac/Perl2/Population.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,479 copying bionetgen/bng-mac/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,484 copying bionetgen/bng-mac/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,490 copying bionetgen/bng-mac/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,496 copying bionetgen/bng-mac/Perl2/Rxn.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,501 copying bionetgen/bng-mac/Perl2/RxnList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,506 copying bionetgen/bng-mac/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,518 copying bionetgen/bng-mac/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,524 copying bionetgen/bng-mac/Perl2/Species.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,529 copying bionetgen/bng-mac/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,539 copying bionetgen/bng-mac/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,545 copying bionetgen/bng-mac/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,549 copying bionetgen/bng-mac/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,553 copying bionetgen/bng-mac/Perl2/diff_net.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,558 copying bionetgen/bng-mac/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,563 copying bionetgen/bng-mac/Perl2/scan_var.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,568 copying bionetgen/bng-mac/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,573 copying bionetgen/bng-mac/Perl2/verify.pl -> build/lib/bionetgen/bng-mac/Perl2
2023-07-25T18:18:49,577 creating build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,579 copying bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,583 copying bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,587 copying bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,591 copying bionetgen/bng-mac/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,594 copying bionetgen/bng-mac/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,598 copying bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,602 copying bionetgen/bng-mac/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,606 copying bionetgen/bng-mac/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,610 copying bionetgen/bng-mac/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,614 copying bionetgen/bng-mac/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,618 copying bionetgen/bng-mac/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,622 copying bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,627 copying bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,631 copying bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,635 copying bionetgen/bng-mac/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:49,638 creating build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,640 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,644 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,649 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,653 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,657 copying bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:49,661 creating build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,663 copying bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,667 copying bionetgen/bng-mac/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,675 copying bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,681 copying bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,686 copying bionetgen/bng-mac/Perl2/Visualization/README -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,690 copying bionetgen/bng-mac/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,694 copying bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,699 copying bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,703 copying bionetgen/bng-mac/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,710 copying bionetgen/bng-mac/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,715 copying bionetgen/bng-mac/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,719 copying bionetgen/bng-mac/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:49,724 creating build/lib/bionetgen/bng-mac/Perl2/XML
2023-07-25T18:18:49,726 copying bionetgen/bng-mac/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-mac/Perl2/XML
2023-07-25T18:18:49,732 creating build/lib/bionetgen/bng-mac/bin
2023-07-25T18:18:49,735 copying bionetgen/bng-mac/bin/NFsim -> build/lib/bionetgen/bng-mac/bin
2023-07-25T18:18:49,873 copying bionetgen/bng-mac/bin/run_network -> build/lib/bionetgen/bng-mac/bin
2023-07-25T18:18:50,028 copying bionetgen/bng-mac/bin/sundials-config -> build/lib/bionetgen/bng-mac/bin
2023-07-25T18:18:50,034 creating build/lib/bionetgen/bng-win
2023-07-25T18:18:50,036 copying bionetgen/bng-win/BNG2.pl -> build/lib/bionetgen/bng-win
2023-07-25T18:18:50,043 copying bionetgen/bng-win/VERSION -> build/lib/bionetgen/bng-win
2023-07-25T18:18:50,048 creating build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,050 copying bionetgen/bng-win/Perl2/BNGAction.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,059 copying bionetgen/bng-win/Perl2/BNGMessages.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,064 copying bionetgen/bng-win/Perl2/BNGModel.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,074 copying bionetgen/bng-win/Perl2/BNGOptions.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,077 copying bionetgen/bng-win/Perl2/BNGOutput.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,090 copying bionetgen/bng-win/Perl2/BNGUtils.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,096 copying bionetgen/bng-win/Perl2/Cache.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,101 copying bionetgen/bng-win/Perl2/CartesianProduct.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,106 copying bionetgen/bng-win/Perl2/Compartment.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,111 copying bionetgen/bng-win/Perl2/CompartmentList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,116 copying bionetgen/bng-win/Perl2/Component.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,122 copying bionetgen/bng-win/Perl2/ComponentType.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,128 copying bionetgen/bng-win/Perl2/Console.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,133 copying bionetgen/bng-win/Perl2/EnergyPattern.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,138 copying bionetgen/bng-win/Perl2/Expression.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,149 copying bionetgen/bng-win/Perl2/Function.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,154 copying bionetgen/bng-win/Perl2/HNauty.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,161 copying bionetgen/bng-win/Perl2/MacroBNG2.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,165 copying bionetgen/bng-win/Perl2/MacroBNGModel.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,176 copying bionetgen/bng-win/Perl2/Map.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,182 copying bionetgen/bng-win/Perl2/ModelWrapper.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,186 copying bionetgen/bng-win/Perl2/Molecule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,193 copying bionetgen/bng-win/Perl2/MoleculeType.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,198 copying bionetgen/bng-win/Perl2/MoleculeTypesList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,203 copying bionetgen/bng-win/Perl2/Observable.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,210 copying bionetgen/bng-win/Perl2/Param.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,214 copying bionetgen/bng-win/Perl2/ParamList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,220 copying bionetgen/bng-win/Perl2/Population.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,224 copying bionetgen/bng-win/Perl2/PopulationList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,229 copying bionetgen/bng-win/Perl2/RateLaw.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,235 copying bionetgen/bng-win/Perl2/RefineRule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,242 copying bionetgen/bng-win/Perl2/Rxn.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,247 copying bionetgen/bng-win/Perl2/RxnList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,253 copying bionetgen/bng-win/Perl2/RxnRule.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,265 copying bionetgen/bng-win/Perl2/SBMLMultiAux.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,271 copying bionetgen/bng-win/Perl2/Species.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,277 copying bionetgen/bng-win/Perl2/SpeciesGraph.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,288 copying bionetgen/bng-win/Perl2/SpeciesList.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,295 copying bionetgen/bng-win/Perl2/XMLReader.pm -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,300 copying bionetgen/bng-win/Perl2/auto_hpp.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,306 copying bionetgen/bng-win/Perl2/diff_net.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,312 copying bionetgen/bng-win/Perl2/sample_vars_2.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,318 copying bionetgen/bng-win/Perl2/scan_var.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,325 copying bionetgen/bng-win/Perl2/test_cartesianproduct.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,330 copying bionetgen/bng-win/Perl2/verify.pl -> build/lib/bionetgen/bng-win/Perl2
2023-07-25T18:18:50,335 creating build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,337 copying bionetgen/bng-win/Perl2/Aux2/MakeBin.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,342 copying bionetgen/bng-win/Perl2/Aux2/bnglstat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,346 copying bionetgen/bng-win/Perl2/Aux2/count_blocks.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,350 copying bionetgen/bng-win/Perl2/Aux2/count_lines.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,355 copying bionetgen/bng-win/Perl2/Aux2/countdown.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,359 copying bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,364 copying bionetgen/bng-win/Perl2/Aux2/express.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,368 copying bionetgen/bng-win/Perl2/Aux2/express_main.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,373 copying bionetgen/bng-win/Perl2/Aux2/group_size.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,377 copying bionetgen/bng-win/Perl2/Aux2/runBNG.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,381 copying bionetgen/bng-win/Perl2/Aux2/test.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,386 copying bionetgen/bng-win/Perl2/Aux2/test_compartment.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,390 copying bionetgen/bng-win/Perl2/Aux2/test_molorder.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,395 copying bionetgen/bng-win/Perl2/Aux2/test_redirect.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,399 copying bionetgen/bng-win/Perl2/Aux2/test_sub.pl -> build/lib/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:50,403 creating build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,405 copying bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,409 copying bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,414 copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,419 copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,423 copying bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:50,428 creating build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,430 copying bionetgen/bng-win/Perl2/Visualization/ContactMap.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,435 copying bionetgen/bng-win/Perl2/Visualization/GML.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,443 copying bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,449 copying bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,454 copying bionetgen/bng-win/Perl2/Visualization/README -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,459 copying bionetgen/bng-win/Perl2/Visualization/RINF.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,464 copying bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,469 copying bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,473 copying bionetgen/bng-win/Perl2/Visualization/Viz.pm -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,482 copying bionetgen/bng-win/Perl2/Visualization/analyze.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,488 copying bionetgen/bng-win/Perl2/Visualization/readGML.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,492 copying bionetgen/bng-win/Perl2/Visualization/visualize.pl -> build/lib/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:50,497 creating build/lib/bionetgen/bng-win/Perl2/XML
2023-07-25T18:18:50,498 copying bionetgen/bng-win/Perl2/XML/TreePP.pm -> build/lib/bionetgen/bng-win/Perl2/XML
2023-07-25T18:18:50,506 creating build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:50,508 copying bionetgen/bng-win/bin/NFsim.exe -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:50,658 copying bionetgen/bng-win/bin/cyggcc_s-seh-1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:50,670 copying bionetgen/bng-win/bin/cygstdc++-6.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:50,827 copying bionetgen/bng-win/bin/cygwin1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,045 copying bionetgen/bng-win/bin/cygz.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,057 copying bionetgen/bng-win/bin/cygzstd-1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,112 copying bionetgen/bng-win/bin/libgcc_s_seh-1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,156 copying bionetgen/bng-win/bin/libstdc++-6.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,304 copying bionetgen/bng-win/bin/libwinpthread-1.dll -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:51,318 copying bionetgen/bng-win/bin/run_network.exe -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:52,284 copying bionetgen/bng-win/bin/sundials-config -> build/lib/bionetgen/bng-win/bin
2023-07-25T18:18:52,401 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-07-25T18:18:52,401 !!
2023-07-25T18:18:52,402 ********************************************************************************
2023-07-25T18:18:52,402 Please avoid running ``setup.py`` directly.
2023-07-25T18:18:52,403 Instead, use pypa/build, pypa/installer, pypa/build or
2023-07-25T18:18:52,403 other standards-based tools.
2023-07-25T18:18:52,404 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-07-25T18:18:52,404 ********************************************************************************
2023-07-25T18:18:52,405 !!
2023-07-25T18:18:52,405 self.initialize_options()
2023-07-25T18:18:52,487 installing to build/bdist.linux-armv7l/wheel
2023-07-25T18:18:52,488 running install
2023-07-25T18:18:52,549 running install_lib
2023-07-25T18:18:52,630 creating build/bdist.linux-armv7l
2023-07-25T18:18:52,632 creating build/bdist.linux-armv7l/wheel
2023-07-25T18:18:52,635 creating build/bdist.linux-armv7l/wheel/bionetgen
2023-07-25T18:18:52,639 creating build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,641 copying build/lib/bionetgen/network/structs.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,646 copying build/lib/bionetgen/network/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,649 copying build/lib/bionetgen/network/network.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,654 copying build/lib/bionetgen/network/blocks.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,659 copying build/lib/bionetgen/network/networkparser.py -> build/bdist.linux-armv7l/wheel/bionetgen/network
2023-07-25T18:18:52,663 copying build/lib/bionetgen/main.py -> build/bdist.linux-armv7l/wheel/bionetgen
2023-07-25T18:18:52,670 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-07-25T18:18:52,673 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,675 copying build/lib/bionetgen/bng-win/bin/libstdc++-6.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,768 copying build/lib/bionetgen/bng-win/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,776 copying build/lib/bionetgen/bng-win/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,780 copying build/lib/bionetgen/bng-win/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,932 copying build/lib/bionetgen/bng-win/bin/libwinpthread-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,944 copying build/lib/bionetgen/bng-win/bin/libgcc_s_seh-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:52,979 copying build/lib/bionetgen/bng-win/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,079 copying build/lib/bionetgen/bng-win/bin/cygzstd-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,121 copying build/lib/bionetgen/bng-win/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,128 copying build/lib/bionetgen/bng-win/bin/NFsim.exe -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,232 copying build/lib/bionetgen/bng-win/bin/run_network.exe -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/bin
2023-07-25T18:18:53,748 copying build/lib/bionetgen/bng-win/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-07-25T18:18:53,753 copying build/lib/bionetgen/bng-win/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win
2023-07-25T18:18:53,759 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,762 copying build/lib/bionetgen/bng-win/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,767 copying build/lib/bionetgen/bng-win/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,772 copying build/lib/bionetgen/bng-win/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,777 copying build/lib/bionetgen/bng-win/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,783 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,785 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,789 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,793 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,797 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,801 copying build/lib/bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Boolean2BNGL
2023-07-25T18:18:53,805 copying build/lib/bionetgen/bng-win/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,810 copying build/lib/bionetgen/bng-win/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,815 copying build/lib/bionetgen/bng-win/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,819 copying build/lib/bionetgen/bng-win/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,824 copying build/lib/bionetgen/bng-win/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,836 copying build/lib/bionetgen/bng-win/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,841 copying build/lib/bionetgen/bng-win/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,847 copying build/lib/bionetgen/bng-win/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,851 copying build/lib/bionetgen/bng-win/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,855 copying build/lib/bionetgen/bng-win/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,859 copying build/lib/bionetgen/bng-win/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,864 copying build/lib/bionetgen/bng-win/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,868 copying build/lib/bionetgen/bng-win/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,874 copying build/lib/bionetgen/bng-win/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,879 copying build/lib/bionetgen/bng-win/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,887 copying build/lib/bionetgen/bng-win/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,893 copying build/lib/bionetgen/bng-win/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,898 copying build/lib/bionetgen/bng-win/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,903 copying build/lib/bionetgen/bng-win/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,908 copying build/lib/bionetgen/bng-win/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,912 copying build/lib/bionetgen/bng-win/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,918 copying build/lib/bionetgen/bng-win/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,921 copying build/lib/bionetgen/bng-win/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,925 copying build/lib/bionetgen/bng-win/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,929 copying build/lib/bionetgen/bng-win/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,941 copying build/lib/bionetgen/bng-win/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,945 copying build/lib/bionetgen/bng-win/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,950 copying build/lib/bionetgen/bng-win/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,956 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/XML
2023-07-25T18:18:53,958 copying build/lib/bionetgen/bng-win/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/XML
2023-07-25T18:18:53,966 copying build/lib/bionetgen/bng-win/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,973 copying build/lib/bionetgen/bng-win/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,984 copying build/lib/bionetgen/bng-win/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:53,991 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:53,993 copying build/lib/bionetgen/bng-win/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:53,998 copying build/lib/bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,004 copying build/lib/bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,010 copying build/lib/bionetgen/bng-win/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,018 copying build/lib/bionetgen/bng-win/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,022 copying build/lib/bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,026 copying build/lib/bionetgen/bng-win/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,031 copying build/lib/bionetgen/bng-win/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,036 copying build/lib/bionetgen/bng-win/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,041 copying build/lib/bionetgen/bng-win/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,047 copying build/lib/bionetgen/bng-win/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,055 copying build/lib/bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Visualization
2023-07-25T18:18:54,060 copying build/lib/bionetgen/bng-win/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,066 copying build/lib/bionetgen/bng-win/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,072 copying build/lib/bionetgen/bng-win/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,082 copying build/lib/bionetgen/bng-win/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,087 copying build/lib/bionetgen/bng-win/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,102 copying build/lib/bionetgen/bng-win/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,108 copying build/lib/bionetgen/bng-win/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,115 copying build/lib/bionetgen/bng-win/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,122 copying build/lib/bionetgen/bng-win/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,128 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,130 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,134 copying build/lib/bionetgen/bng-win/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,138 copying build/lib/bionetgen/bng-win/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,142 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,146 copying build/lib/bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,150 copying build/lib/bionetgen/bng-win/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,154 copying build/lib/bionetgen/bng-win/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,158 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,162 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,166 copying build/lib/bionetgen/bng-win/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,169 copying build/lib/bionetgen/bng-win/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,174 copying build/lib/bionetgen/bng-win/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,177 copying build/lib/bionetgen/bng-win/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,182 copying build/lib/bionetgen/bng-win/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,185 copying build/lib/bionetgen/bng-win/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2/Aux2
2023-07-25T18:18:54,189 copying build/lib/bionetgen/bng-win/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-win/Perl2
2023-07-25T18:18:54,196 creating build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,198 copying build/lib/bionetgen/assets/BNGVERSION -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,202 copying build/lib/bionetgen/assets/ghapi.json -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,206 copying build/lib/bionetgen/assets/bionetgen.ipynb -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,211 copying build/lib/bionetgen/assets/bionetgen-temp.ipynb -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,216 copying build/lib/bionetgen/assets/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,220 copying build/lib/bionetgen/assets/get_version_json.py -> build/bdist.linux-armv7l/wheel/bionetgen/assets
2023-07-25T18:18:54,223 copying build/lib/bionetgen/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen
2023-07-25T18:18:54,228 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-07-25T18:18:54,231 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-07-25T18:18:54,233 copying build/lib/bionetgen/bng-mac/bin/NFsim -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-07-25T18:18:54,308 copying build/lib/bionetgen/bng-mac/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-07-25T18:18:54,312 copying build/lib/bionetgen/bng-mac/bin/run_network -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/bin
2023-07-25T18:18:54,414 copying build/lib/bionetgen/bng-mac/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-07-25T18:18:54,419 copying build/lib/bionetgen/bng-mac/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac
2023-07-25T18:18:54,425 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,427 copying build/lib/bionetgen/bng-mac/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,432 copying build/lib/bionetgen/bng-mac/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,437 copying build/lib/bionetgen/bng-mac/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,442 copying build/lib/bionetgen/bng-mac/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,447 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,449 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,453 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,457 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,461 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,465 copying build/lib/bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Boolean2BNGL
2023-07-25T18:18:54,469 copying build/lib/bionetgen/bng-mac/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,473 copying build/lib/bionetgen/bng-mac/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,478 copying build/lib/bionetgen/bng-mac/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,483 copying build/lib/bionetgen/bng-mac/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,488 copying build/lib/bionetgen/bng-mac/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,500 copying build/lib/bionetgen/bng-mac/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,506 copying build/lib/bionetgen/bng-mac/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,512 copying build/lib/bionetgen/bng-mac/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,516 copying build/lib/bionetgen/bng-mac/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,522 copying build/lib/bionetgen/bng-mac/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,526 copying build/lib/bionetgen/bng-mac/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,531 copying build/lib/bionetgen/bng-mac/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,535 copying build/lib/bionetgen/bng-mac/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,542 copying build/lib/bionetgen/bng-mac/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,547 copying build/lib/bionetgen/bng-mac/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,555 copying build/lib/bionetgen/bng-mac/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,559 copying build/lib/bionetgen/bng-mac/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,564 copying build/lib/bionetgen/bng-mac/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,569 copying build/lib/bionetgen/bng-mac/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,573 copying build/lib/bionetgen/bng-mac/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,577 copying build/lib/bionetgen/bng-mac/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,583 copying build/lib/bionetgen/bng-mac/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,588 copying build/lib/bionetgen/bng-mac/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,593 copying build/lib/bionetgen/bng-mac/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,598 copying build/lib/bionetgen/bng-mac/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,606 copying build/lib/bionetgen/bng-mac/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,611 copying build/lib/bionetgen/bng-mac/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,617 copying build/lib/bionetgen/bng-mac/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,623 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/XML
2023-07-25T18:18:54,625 copying build/lib/bionetgen/bng-mac/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/XML
2023-07-25T18:18:54,633 copying build/lib/bionetgen/bng-mac/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,641 copying build/lib/bionetgen/bng-mac/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,651 copying build/lib/bionetgen/bng-mac/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,659 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,662 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,667 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,673 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,679 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,687 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,692 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,697 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,703 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,708 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,712 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,717 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,725 copying build/lib/bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Visualization
2023-07-25T18:18:54,730 copying build/lib/bionetgen/bng-mac/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,735 copying build/lib/bionetgen/bng-mac/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,740 copying build/lib/bionetgen/bng-mac/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,750 copying build/lib/bionetgen/bng-mac/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,755 copying build/lib/bionetgen/bng-mac/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,771 copying build/lib/bionetgen/bng-mac/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,775 copying build/lib/bionetgen/bng-mac/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,780 copying build/lib/bionetgen/bng-mac/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,786 copying build/lib/bionetgen/bng-mac/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,794 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,796 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,801 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,806 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,810 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,814 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,818 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,822 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,825 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,829 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,833 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,836 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,840 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,845 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,849 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,854 copying build/lib/bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2/Aux2
2023-07-25T18:18:54,859 copying build/lib/bionetgen/bng-mac/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-mac/Perl2
2023-07-25T18:18:54,864 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-07-25T18:18:54,866 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-07-25T18:18:54,868 copying build/lib/bionetgen/bng-linux/bin/NFsim -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-07-25T18:18:54,960 copying build/lib/bionetgen/bng-linux/bin/sundials-config -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-07-25T18:18:54,963 copying build/lib/bionetgen/bng-linux/bin/run_network -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/bin
2023-07-25T18:18:55,072 copying build/lib/bionetgen/bng-linux/BNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-07-25T18:18:55,077 copying build/lib/bionetgen/bng-linux/VERSION -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux
2023-07-25T18:18:55,083 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,084 copying build/lib/bionetgen/bng-linux/Perl2/SBMLMultiAux.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,089 copying build/lib/bionetgen/bng-linux/Perl2/EnergyPattern.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,094 copying build/lib/bionetgen/bng-linux/Perl2/HNauty.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,099 copying build/lib/bionetgen/bng-linux/Perl2/MacroBNG2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,103 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,105 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,108 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,112 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,115 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,119 copying build/lib/bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Boolean2BNGL
2023-07-25T18:18:55,123 copying build/lib/bionetgen/bng-linux/Perl2/CartesianProduct.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,127 copying build/lib/bionetgen/bng-linux/Perl2/BNGUtils.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,132 copying build/lib/bionetgen/bng-linux/Perl2/Species.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,136 copying build/lib/bionetgen/bng-linux/Perl2/MoleculeType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,141 copying build/lib/bionetgen/bng-linux/Perl2/RxnRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,151 copying build/lib/bionetgen/bng-linux/Perl2/sample_vars_2.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,156 copying build/lib/bionetgen/bng-linux/Perl2/Function.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,160 copying build/lib/bionetgen/bng-linux/Perl2/ModelWrapper.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,164 copying build/lib/bionetgen/bng-linux/Perl2/BNGMessages.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,167 copying build/lib/bionetgen/bng-linux/Perl2/Cache.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,171 copying build/lib/bionetgen/bng-linux/Perl2/Population.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,175 copying build/lib/bionetgen/bng-linux/Perl2/test_cartesianproduct.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,178 copying build/lib/bionetgen/bng-linux/Perl2/Molecule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,183 copying build/lib/bionetgen/bng-linux/Perl2/Console.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,187 copying build/lib/bionetgen/bng-linux/Perl2/MacroBNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,195 copying build/lib/bionetgen/bng-linux/Perl2/CompartmentList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,200 copying build/lib/bionetgen/bng-linux/Perl2/diff_net.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,204 copying build/lib/bionetgen/bng-linux/Perl2/ComponentType.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,208 copying build/lib/bionetgen/bng-linux/Perl2/scan_var.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,213 copying build/lib/bionetgen/bng-linux/Perl2/PopulationList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,216 copying build/lib/bionetgen/bng-linux/Perl2/ParamList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,222 copying build/lib/bionetgen/bng-linux/Perl2/XMLReader.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,225 copying build/lib/bionetgen/bng-linux/Perl2/BNGOptions.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,229 copying build/lib/bionetgen/bng-linux/Perl2/auto_hpp.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,233 copying build/lib/bionetgen/bng-linux/Perl2/Expression.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,241 copying build/lib/bionetgen/bng-linux/Perl2/verify.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,245 copying build/lib/bionetgen/bng-linux/Perl2/Observable.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,250 copying build/lib/bionetgen/bng-linux/Perl2/Compartment.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,256 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/XML
2023-07-25T18:18:55,257 copying build/lib/bionetgen/bng-linux/Perl2/XML/TreePP.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/XML
2023-07-25T18:18:55,264 copying build/lib/bionetgen/bng-linux/Perl2/BNGAction.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,272 copying build/lib/bionetgen/bng-linux/Perl2/SpeciesGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,282 copying build/lib/bionetgen/bng-linux/Perl2/RefineRule.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,289 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,291 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/visualize.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,295 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,301 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,305 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/GML.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,312 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/RINF.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,316 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,319 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/analyze.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,324 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,328 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/readGML.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,332 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/README -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,336 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/Viz.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,343 copying build/lib/bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Visualization
2023-07-25T18:18:55,348 copying build/lib/bionetgen/bng-linux/Perl2/RxnList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,353 copying build/lib/bionetgen/bng-linux/Perl2/SpeciesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,358 copying build/lib/bionetgen/bng-linux/Perl2/BNGModel.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,367 copying build/lib/bionetgen/bng-linux/Perl2/Map.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,371 copying build/lib/bionetgen/bng-linux/Perl2/BNGOutput.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,383 copying build/lib/bionetgen/bng-linux/Perl2/Rxn.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,387 copying build/lib/bionetgen/bng-linux/Perl2/MoleculeTypesList.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,392 copying build/lib/bionetgen/bng-linux/Perl2/RateLaw.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,398 copying build/lib/bionetgen/bng-linux/Perl2/Component.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,404 creating build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,406 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_sub.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,410 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/express.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,414 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/runBNG.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,417 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,421 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,424 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/express_main.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,428 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,431 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,435 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,438 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/countdown.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,441 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,445 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/group_size.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,448 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/count_lines.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,452 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/test.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,455 copying build/lib/bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2/Aux2
2023-07-25T18:18:55,459 copying build/lib/bionetgen/bng-linux/Perl2/Param.pm -> build/bdist.linux-armv7l/wheel/bionetgen/bng-linux/Perl2
2023-07-25T18:18:55,464 creating build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,466 copying build/lib/bionetgen/modelapi/structs.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,471 copying build/lib/bionetgen/modelapi/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,474 copying build/lib/bionetgen/modelapi/bngparser.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,479 copying build/lib/bionetgen/modelapi/pattern_reader.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,484 copying build/lib/bionetgen/modelapi/xmlparsers.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,490 copying build/lib/bionetgen/modelapi/runner.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,493 copying build/lib/bionetgen/modelapi/blocks.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,498 copying build/lib/bionetgen/modelapi/model.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,503 copying build/lib/bionetgen/modelapi/bngfile.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,507 copying build/lib/bionetgen/modelapi/pattern.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,512 copying build/lib/bionetgen/modelapi/rulemod.py -> build/bdist.linux-armv7l/wheel/bionetgen/modelapi
2023-07-25T18:18:55,517 creating build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,518 copying build/lib/bionetgen/simulator/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,522 copying build/lib/bionetgen/simulator/csimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,526 copying build/lib/bionetgen/simulator/bngsimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,530 copying build/lib/bionetgen/simulator/simulators.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,533 copying build/lib/bionetgen/simulator/librrsimulator.py -> build/bdist.linux-armv7l/wheel/bionetgen/simulator
2023-07-25T18:18:55,538 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,540 copying build/lib/bionetgen/atomizer/libsbml2bngl.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,548 copying build/lib/bionetgen/atomizer/contextAnalyzer.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,553 copying build/lib/bionetgen/atomizer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,557 copying build/lib/bionetgen/atomizer/sbmlTranslator.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,561 copying build/lib/bionetgen/atomizer/contactMap.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,565 copying build/lib/bionetgen/atomizer/bngModel.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,575 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,576 copying build/lib/bionetgen/atomizer/utils/annotationExtender.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,582 copying build/lib/bionetgen/atomizer/utils/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,584 copying build/lib/bionetgen/atomizer/utils/annotationDeletion.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,589 copying build/lib/bionetgen/atomizer/utils/modelComparison.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,593 copying build/lib/bionetgen/atomizer/utils/util.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,597 copying build/lib/bionetgen/atomizer/utils/consoleCommands.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,601 copying build/lib/bionetgen/atomizer/utils/structures.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,606 copying build/lib/bionetgen/atomizer/utils/readBNGXML.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,611 copying build/lib/bionetgen/atomizer/utils/extractAtomic.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,616 copying build/lib/bionetgen/atomizer/utils/nameNormalizer.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,620 copying build/lib/bionetgen/atomizer/utils/annotationResolver.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,624 copying build/lib/bionetgen/atomizer/utils/annotationComparison.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,629 copying build/lib/bionetgen/atomizer/utils/annotationExtractor.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,633 copying build/lib/bionetgen/atomizer/utils/pathwaycommons.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,638 copying build/lib/bionetgen/atomizer/utils/smallStructures.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/utils
2023-07-25T18:18:55,643 copying build/lib/bionetgen/atomizer/parseAnnotation.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,646 copying build/lib/bionetgen/atomizer/sbml2json.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,652 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-07-25T18:18:55,654 copying build/lib/bionetgen/atomizer/merging/namingDatabase.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-07-25T18:18:55,659 copying build/lib/bionetgen/atomizer/merging/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-07-25T18:18:55,663 copying build/lib/bionetgen/atomizer/merging/compareNamingConventions.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/merging
2023-07-25T18:18:55,666 copying build/lib/bionetgen/atomizer/sbml2bngl.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,679 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,680 copying build/lib/bionetgen/atomizer/atomizer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,685 copying build/lib/bionetgen/atomizer/atomizer/analyzeSBML.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,694 copying build/lib/bionetgen/atomizer/atomizer/analyzeRDF.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,698 copying build/lib/bionetgen/atomizer/atomizer/detectOntology.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,702 copying build/lib/bionetgen/atomizer/atomizer/atomizationAux.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,706 copying build/lib/bionetgen/atomizer/atomizer/moleculeCreation.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,713 copying build/lib/bionetgen/atomizer/atomizer/atomizerUtils.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,717 copying build/lib/bionetgen/atomizer/atomizer/resolveSCT.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/atomizer
2023-07-25T18:18:55,726 copying build/lib/bionetgen/atomizer/biogrid.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,731 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-07-25T18:18:55,734 copying build/lib/bionetgen/atomizer/writer/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-07-25T18:18:55,737 copying build/lib/bionetgen/atomizer/writer/bnglWriter.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/writer
2023-07-25T18:18:55,744 creating build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,746 copying build/lib/bionetgen/atomizer/rulifier/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,750 copying build/lib/bionetgen/atomizer/rulifier/componentGroups.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,757 copying build/lib/bionetgen/atomizer/rulifier/compareModels.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,762 copying build/lib/bionetgen/atomizer/rulifier/stateTransitionDiagram.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,767 copying build/lib/bionetgen/atomizer/rulifier/stdgraph.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,773 copying build/lib/bionetgen/atomizer/rulifier/parameterExtraction.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,778 copying build/lib/bionetgen/atomizer/rulifier/postAnalysis.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,785 copying build/lib/bionetgen/atomizer/rulifier/arial10.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer/rulifier
2023-07-25T18:18:55,790 copying build/lib/bionetgen/atomizer/atomizeTool.py -> build/bdist.linux-armv7l/wheel/bionetgen/atomizer
2023-07-25T18:18:55,795 creating build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,798 copying build/lib/bionetgen/core/notebook.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,803 copying build/lib/bionetgen/core/main.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,808 copying build/lib/bionetgen/core/exc.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,812 copying build/lib/bionetgen/core/version.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,816 copying build/lib/bionetgen/core/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,820 creating build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-07-25T18:18:55,823 copying build/lib/bionetgen/core/utils/logging.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-07-25T18:18:55,827 copying build/lib/bionetgen/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-07-25T18:18:55,831 copying build/lib/bionetgen/core/utils/utils.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/utils
2023-07-25T18:18:55,838 creating build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,840 copying build/lib/bionetgen/core/tools/gdiff.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,846 copying build/lib/bionetgen/core/tools/visualize.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,850 copying build/lib/bionetgen/core/tools/__init__.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,854 copying build/lib/bionetgen/core/tools/plot.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,857 copying build/lib/bionetgen/core/tools/info.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,861 copying build/lib/bionetgen/core/tools/cli.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,865 copying build/lib/bionetgen/core/tools/result.py -> build/bdist.linux-armv7l/wheel/bionetgen/core/tools
2023-07-25T18:18:55,869 copying build/lib/bionetgen/core/defaults.py -> build/bdist.linux-armv7l/wheel/bionetgen/core
2023-07-25T18:18:55,873 running install_egg_info
2023-07-25T18:18:55,954 Copying bionetgen.egg-info to build/bdist.linux-armv7l/wheel/bionetgen-0.8.1-py3.7.egg-info
2023-07-25T18:18:55,984 running install_scripts
2023-07-25T18:18:56,026 creating build/bdist.linux-armv7l/wheel/bionetgen-0.8.1.dist-info/WHEEL
2023-07-25T18:18:56,032 creating '/tmp/pip-wheel-0_afdub5/bionetgen-0.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-07-25T18:18:56,037 adding 'bionetgen/__init__.py'
2023-07-25T18:18:56,044 adding 'bionetgen/main.py'
2023-07-25T18:18:56,048 adding 'bionetgen/assets/BNGVERSION'
2023-07-25T18:18:56,050 adding 'bionetgen/assets/VERSION'
2023-07-25T18:18:56,056 adding 'bionetgen/assets/bionetgen-temp.ipynb'
2023-07-25T18:18:56,062 adding 'bionetgen/assets/bionetgen.ipynb'
2023-07-25T18:18:56,065 adding 'bionetgen/assets/get_version_json.py'
2023-07-25T18:18:56,068 adding 'bionetgen/assets/ghapi.json'
2023-07-25T18:18:56,072 adding 'bionetgen/atomizer/__init__.py'
2023-07-25T18:18:56,075 adding 'bionetgen/atomizer/atomizeTool.py'
2023-07-25T18:18:56,078 adding 'bionetgen/atomizer/biogrid.py'
2023-07-25T18:18:56,097 adding 'bionetgen/atomizer/bngModel.py'
2023-07-25T18:18:56,102 adding 'bionetgen/atomizer/contactMap.py'
2023-07-25T18:18:56,108 adding 'bionetgen/atomizer/contextAnalyzer.py'
2023-07-25T18:18:56,129 adding 'bionetgen/atomizer/libsbml2bngl.py'
2023-07-25T18:18:56,133 adding 'bionetgen/atomizer/parseAnnotation.py'
2023-07-25T18:18:56,171 adding 'bionetgen/atomizer/sbml2bngl.py'
2023-07-25T18:18:56,179 adding 'bionetgen/atomizer/sbml2json.py'
2023-07-25T18:18:56,183 adding 'bionetgen/atomizer/sbmlTranslator.py'
2023-07-25T18:18:56,186 adding 'bionetgen/atomizer/atomizer/__init__.py'
2023-07-25T18:18:56,189 adding 'bionetgen/atomizer/atomizer/analyzeRDF.py'
2023-07-25T18:18:56,216 adding 'bionetgen/atomizer/atomizer/analyzeSBML.py'
2023-07-25T18:18:56,222 adding 'bionetgen/atomizer/atomizer/atomizationAux.py'
2023-07-25T18:18:56,224 adding 'bionetgen/atomizer/atomizer/atomizerUtils.py'
2023-07-25T18:18:56,229 adding 'bionetgen/atomizer/atomizer/detectOntology.py'
2023-07-25T18:18:56,243 adding 'bionetgen/atomizer/atomizer/moleculeCreation.py'
2023-07-25T18:18:56,264 adding 'bionetgen/atomizer/atomizer/resolveSCT.py'
2023-07-25T18:18:56,269 adding 'bionetgen/atomizer/merging/__init__.py'
2023-07-25T18:18:56,271 adding 'bionetgen/atomizer/merging/compareNamingConventions.py'
2023-07-25T18:18:56,276 adding 'bionetgen/atomizer/merging/namingDatabase.py'
2023-07-25T18:18:56,280 adding 'bionetgen/atomizer/rulifier/__init__.py'
2023-07-25T18:18:56,283 adding 'bionetgen/atomizer/rulifier/arial10.py'
2023-07-25T18:18:56,288 adding 'bionetgen/atomizer/rulifier/compareModels.py'
2023-07-25T18:18:56,296 adding 'bionetgen/atomizer/rulifier/componentGroups.py'
2023-07-25T18:18:56,300 adding 'bionetgen/atomizer/rulifier/parameterExtraction.py'
2023-07-25T18:18:56,307 adding 'bionetgen/atomizer/rulifier/postAnalysis.py'
2023-07-25T18:18:56,312 adding 'bionetgen/atomizer/rulifier/stateTransitionDiagram.py'
2023-07-25T18:18:56,316 adding 'bionetgen/atomizer/rulifier/stdgraph.py'
2023-07-25T18:18:56,320 adding 'bionetgen/atomizer/utils/__init__.py'
2023-07-25T18:18:56,324 adding 'bionetgen/atomizer/utils/annotationComparison.py'
2023-07-25T18:18:56,328 adding 'bionetgen/atomizer/utils/annotationDeletion.py'
2023-07-25T18:18:56,334 adding 'bionetgen/atomizer/utils/annotationExtender.py'
2023-07-25T18:18:56,339 adding 'bionetgen/atomizer/utils/annotationExtractor.py'
2023-07-25T18:18:56,342 adding 'bionetgen/atomizer/utils/annotationResolver.py'
2023-07-25T18:18:56,345 adding 'bionetgen/atomizer/utils/consoleCommands.py'
2023-07-25T18:18:56,348 adding 'bionetgen/atomizer/utils/extractAtomic.py'
2023-07-25T18:18:56,351 adding 'bionetgen/atomizer/utils/modelComparison.py'
2023-07-25T18:18:56,354 adding 'bionetgen/atomizer/utils/nameNormalizer.py'
2023-07-25T18:18:56,358 adding 'bionetgen/atomizer/utils/pathwaycommons.py'
2023-07-25T18:18:56,363 adding 'bionetgen/atomizer/utils/readBNGXML.py'
2023-07-25T18:18:56,371 adding 'bionetgen/atomizer/utils/smallStructures.py'
2023-07-25T18:18:56,377 adding 'bionetgen/atomizer/utils/structures.py'
2023-07-25T18:18:56,382 adding 'bionetgen/atomizer/utils/util.py'
2023-07-25T18:18:56,386 adding 'bionetgen/atomizer/writer/__init__.py'
2023-07-25T18:18:56,392 adding 'bionetgen/atomizer/writer/bnglWriter.py'
2023-07-25T18:18:56,397 adding 'bionetgen/bng-linux/BNG2.pl'
2023-07-25T18:18:56,400 adding 'bionetgen/bng-linux/VERSION'
2023-07-25T18:18:56,425 adding 'bionetgen/bng-linux/Perl2/BNGAction.pm'
2023-07-25T18:18:56,429 adding 'bionetgen/bng-linux/Perl2/BNGMessages.pm'
2023-07-25T18:18:56,453 adding 'bionetgen/bng-linux/Perl2/BNGModel.pm'
2023-07-25T18:18:56,457 adding 'bionetgen/bng-linux/Perl2/BNGOptions.pm'
2023-07-25T18:18:56,493 adding 'bionetgen/bng-linux/Perl2/BNGOutput.pm'
2023-07-25T18:18:56,501 adding 'bionetgen/bng-linux/Perl2/BNGUtils.pm'
2023-07-25T18:18:56,504 adding 'bionetgen/bng-linux/Perl2/Cache.pm'
2023-07-25T18:18:56,508 adding 'bionetgen/bng-linux/Perl2/CartesianProduct.pm'
2023-07-25T18:18:56,513 adding 'bionetgen/bng-linux/Perl2/Compartment.pm'
2023-07-25T18:18:56,516 adding 'bionetgen/bng-linux/Perl2/CompartmentList.pm'
2023-07-25T18:18:56,522 adding 'bionetgen/bng-linux/Perl2/Component.pm'
2023-07-25T18:18:56,526 adding 'bionetgen/bng-linux/Perl2/ComponentType.pm'
2023-07-25T18:18:56,529 adding 'bionetgen/bng-linux/Perl2/Console.pm'
2023-07-25T18:18:56,533 adding 'bionetgen/bng-linux/Perl2/EnergyPattern.pm'
2023-07-25T18:18:56,552 adding 'bionetgen/bng-linux/Perl2/Expression.pm'
2023-07-25T18:18:56,558 adding 'bionetgen/bng-linux/Perl2/Function.pm'
2023-07-25T18:18:56,568 adding 'bionetgen/bng-linux/Perl2/HNauty.pm'
2023-07-25T18:18:56,571 adding 'bionetgen/bng-linux/Perl2/MacroBNG2.pl'
2023-07-25T18:18:56,596 adding 'bionetgen/bng-linux/Perl2/MacroBNGModel.pm'
2023-07-25T18:18:56,602 adding 'bionetgen/bng-linux/Perl2/Map.pm'
2023-07-25T18:18:56,605 adding 'bionetgen/bng-linux/Perl2/ModelWrapper.pm'
2023-07-25T18:18:56,610 adding 'bionetgen/bng-linux/Perl2/Molecule.pm'
2023-07-25T18:18:56,616 adding 'bionetgen/bng-linux/Perl2/MoleculeType.pm'
2023-07-25T18:18:56,620 adding 'bionetgen/bng-linux/Perl2/MoleculeTypesList.pm'
2023-07-25T18:18:56,626 adding 'bionetgen/bng-linux/Perl2/Observable.pm'
2023-07-25T18:18:56,630 adding 'bionetgen/bng-linux/Perl2/Param.pm'
2023-07-25T18:18:56,638 adding 'bionetgen/bng-linux/Perl2/ParamList.pm'
2023-07-25T18:18:56,641 adding 'bionetgen/bng-linux/Perl2/Population.pm'
2023-07-25T18:18:56,644 adding 'bionetgen/bng-linux/Perl2/PopulationList.pm'
2023-07-25T18:18:56,656 adding 'bionetgen/bng-linux/Perl2/RateLaw.pm'
2023-07-25T18:18:56,664 adding 'bionetgen/bng-linux/Perl2/RefineRule.pm'
2023-07-25T18:18:56,669 adding 'bionetgen/bng-linux/Perl2/Rxn.pm'
2023-07-25T18:18:56,674 adding 'bionetgen/bng-linux/Perl2/RxnList.pm'
2023-07-25T18:18:56,720 adding 'bionetgen/bng-linux/Perl2/RxnRule.pm'
2023-07-25T18:18:56,728 adding 'bionetgen/bng-linux/Perl2/SBMLMultiAux.pm'
2023-07-25T18:18:56,731 adding 'bionetgen/bng-linux/Perl2/Species.pm'
2023-07-25T18:18:56,765 adding 'bionetgen/bng-linux/Perl2/SpeciesGraph.pm'
2023-07-25T18:18:56,774 adding 'bionetgen/bng-linux/Perl2/SpeciesList.pm'
2023-07-25T18:18:56,777 adding 'bionetgen/bng-linux/Perl2/XMLReader.pm'
2023-07-25T18:18:56,781 adding 'bionetgen/bng-linux/Perl2/auto_hpp.pl'
2023-07-25T18:18:56,786 adding 'bionetgen/bng-linux/Perl2/diff_net.pl'
2023-07-25T18:18:56,792 adding 'bionetgen/bng-linux/Perl2/sample_vars_2.pl'
2023-07-25T18:18:56,797 adding 'bionetgen/bng-linux/Perl2/scan_var.pl'
2023-07-25T18:18:56,800 adding 'bionetgen/bng-linux/Perl2/test_cartesianproduct.pl'
2023-07-25T18:18:56,803 adding 'bionetgen/bng-linux/Perl2/verify.pl'
2023-07-25T18:18:56,808 adding 'bionetgen/bng-linux/Perl2/Aux2/MakeBin.pl'
2023-07-25T18:18:56,810 adding 'bionetgen/bng-linux/Perl2/Aux2/bnglstat.pl'
2023-07-25T18:18:56,813 adding 'bionetgen/bng-linux/Perl2/Aux2/count_blocks.pl'
2023-07-25T18:18:56,815 adding 'bionetgen/bng-linux/Perl2/Aux2/count_lines.pl'
2023-07-25T18:18:56,818 adding 'bionetgen/bng-linux/Perl2/Aux2/countdown.pl'
2023-07-25T18:18:56,821 adding 'bionetgen/bng-linux/Perl2/Aux2/diff_cdat.pl'
2023-07-25T18:18:56,824 adding 'bionetgen/bng-linux/Perl2/Aux2/express.pl'
2023-07-25T18:18:56,827 adding 'bionetgen/bng-linux/Perl2/Aux2/express_main.pl'
2023-07-25T18:18:56,829 adding 'bionetgen/bng-linux/Perl2/Aux2/group_size.pl'
2023-07-25T18:18:56,832 adding 'bionetgen/bng-linux/Perl2/Aux2/runBNG.pl'
2023-07-25T18:18:56,835 adding 'bionetgen/bng-linux/Perl2/Aux2/test.pl'
2023-07-25T18:18:56,837 adding 'bionetgen/bng-linux/Perl2/Aux2/test_compartment.pl'
2023-07-25T18:18:56,840 adding 'bionetgen/bng-linux/Perl2/Aux2/test_molorder.pl'
2023-07-25T18:18:56,842 adding 'bionetgen/bng-linux/Perl2/Aux2/test_redirect.pl'
2023-07-25T18:18:56,845 adding 'bionetgen/bng-linux/Perl2/Aux2/test_sub.pl'
2023-07-25T18:18:56,848 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/ABC_example.txt'
2023-07-25T18:18:56,852 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-07-25T18:18:56,855 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-07-25T18:18:56,858 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-07-25T18:18:56,861 adding 'bionetgen/bng-linux/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-07-25T18:18:56,865 adding 'bionetgen/bng-linux/Perl2/Visualization/ContactMap.pm'
2023-07-25T18:18:56,878 adding 'bionetgen/bng-linux/Perl2/Visualization/GML.pm'
2023-07-25T18:18:56,888 adding 'bionetgen/bng-linux/Perl2/Visualization/NetworkGraph.pm'
2023-07-25T18:18:56,893 adding 'bionetgen/bng-linux/Perl2/Visualization/ProcessGraph.pm'
2023-07-25T18:18:56,896 adding 'bionetgen/bng-linux/Perl2/Visualization/README'
2023-07-25T18:18:56,899 adding 'bionetgen/bng-linux/Perl2/Visualization/RINF.pm'
2023-07-25T18:18:56,905 adding 'bionetgen/bng-linux/Perl2/Visualization/StructureGraph.pm'
2023-07-25T18:18:56,908 adding 'bionetgen/bng-linux/Perl2/Visualization/VisOptParse.pm'
2023-07-25T18:18:56,923 adding 'bionetgen/bng-linux/Perl2/Visualization/Viz.pm'
2023-07-25T18:18:56,931 adding 'bionetgen/bng-linux/Perl2/Visualization/analyze.pl'
2023-07-25T18:18:56,934 adding 'bionetgen/bng-linux/Perl2/Visualization/readGML.pl'
2023-07-25T18:18:56,938 adding 'bionetgen/bng-linux/Perl2/Visualization/visualize.pl'
2023-07-25T18:18:56,950 adding 'bionetgen/bng-linux/Perl2/XML/TreePP.pm'
2023-07-25T18:18:57,873 adding 'bionetgen/bng-linux/bin/NFsim'
2023-07-25T18:18:58,678 adding 'bionetgen/bng-linux/bin/run_network'
2023-07-25T18:18:58,722 adding 'bionetgen/bng-linux/bin/sundials-config'
2023-07-25T18:18:58,727 adding 'bionetgen/bng-mac/BNG2.pl'
2023-07-25T18:18:58,730 adding 'bionetgen/bng-mac/VERSION'
2023-07-25T18:18:58,755 adding 'bionetgen/bng-mac/Perl2/BNGAction.pm'
2023-07-25T18:18:58,759 adding 'bionetgen/bng-mac/Perl2/BNGMessages.pm'
2023-07-25T18:18:58,783 adding 'bionetgen/bng-mac/Perl2/BNGModel.pm'
2023-07-25T18:18:58,788 adding 'bionetgen/bng-mac/Perl2/BNGOptions.pm'
2023-07-25T18:18:58,828 adding 'bionetgen/bng-mac/Perl2/BNGOutput.pm'
2023-07-25T18:18:58,837 adding 'bionetgen/bng-mac/Perl2/BNGUtils.pm'
2023-07-25T18:18:58,840 adding 'bionetgen/bng-mac/Perl2/Cache.pm'
2023-07-25T18:18:58,844 adding 'bionetgen/bng-mac/Perl2/CartesianProduct.pm'
2023-07-25T18:18:58,849 adding 'bionetgen/bng-mac/Perl2/Compartment.pm'
2023-07-25T18:18:58,853 adding 'bionetgen/bng-mac/Perl2/CompartmentList.pm'
2023-07-25T18:18:58,858 adding 'bionetgen/bng-mac/Perl2/Component.pm'
2023-07-25T18:18:58,862 adding 'bionetgen/bng-mac/Perl2/ComponentType.pm'
2023-07-25T18:18:58,866 adding 'bionetgen/bng-mac/Perl2/Console.pm'
2023-07-25T18:18:58,870 adding 'bionetgen/bng-mac/Perl2/EnergyPattern.pm'
2023-07-25T18:18:58,889 adding 'bionetgen/bng-mac/Perl2/Expression.pm'
2023-07-25T18:18:58,896 adding 'bionetgen/bng-mac/Perl2/Function.pm'
2023-07-25T18:18:58,904 adding 'bionetgen/bng-mac/Perl2/HNauty.pm'
2023-07-25T18:18:58,907 adding 'bionetgen/bng-mac/Perl2/MacroBNG2.pl'
2023-07-25T18:18:58,932 adding 'bionetgen/bng-mac/Perl2/MacroBNGModel.pm'
2023-07-25T18:18:58,938 adding 'bionetgen/bng-mac/Perl2/Map.pm'
2023-07-25T18:18:58,941 adding 'bionetgen/bng-mac/Perl2/ModelWrapper.pm'
2023-07-25T18:18:58,948 adding 'bionetgen/bng-mac/Perl2/Molecule.pm'
2023-07-25T18:18:58,954 adding 'bionetgen/bng-mac/Perl2/MoleculeType.pm'
2023-07-25T18:18:58,958 adding 'bionetgen/bng-mac/Perl2/MoleculeTypesList.pm'
2023-07-25T18:18:58,964 adding 'bionetgen/bng-mac/Perl2/Observable.pm'
2023-07-25T18:18:58,968 adding 'bionetgen/bng-mac/Perl2/Param.pm'
2023-07-25T18:18:58,975 adding 'bionetgen/bng-mac/Perl2/ParamList.pm'
2023-07-25T18:18:58,979 adding 'bionetgen/bng-mac/Perl2/Population.pm'
2023-07-25T18:18:58,982 adding 'bionetgen/bng-mac/Perl2/PopulationList.pm'
2023-07-25T18:18:58,993 adding 'bionetgen/bng-mac/Perl2/RateLaw.pm'
2023-07-25T18:18:59,002 adding 'bionetgen/bng-mac/Perl2/RefineRule.pm'
2023-07-25T18:18:59,007 adding 'bionetgen/bng-mac/Perl2/Rxn.pm'
2023-07-25T18:18:59,012 adding 'bionetgen/bng-mac/Perl2/RxnList.pm'
2023-07-25T18:18:59,056 adding 'bionetgen/bng-mac/Perl2/RxnRule.pm'
2023-07-25T18:18:59,064 adding 'bionetgen/bng-mac/Perl2/SBMLMultiAux.pm'
2023-07-25T18:18:59,068 adding 'bionetgen/bng-mac/Perl2/Species.pm'
2023-07-25T18:18:59,103 adding 'bionetgen/bng-mac/Perl2/SpeciesGraph.pm'
2023-07-25T18:18:59,112 adding 'bionetgen/bng-mac/Perl2/SpeciesList.pm'
2023-07-25T18:18:59,115 adding 'bionetgen/bng-mac/Perl2/XMLReader.pm'
2023-07-25T18:18:59,118 adding 'bionetgen/bng-mac/Perl2/auto_hpp.pl'
2023-07-25T18:18:59,123 adding 'bionetgen/bng-mac/Perl2/diff_net.pl'
2023-07-25T18:18:59,129 adding 'bionetgen/bng-mac/Perl2/sample_vars_2.pl'
2023-07-25T18:18:59,134 adding 'bionetgen/bng-mac/Perl2/scan_var.pl'
2023-07-25T18:18:59,137 adding 'bionetgen/bng-mac/Perl2/test_cartesianproduct.pl'
2023-07-25T18:18:59,141 adding 'bionetgen/bng-mac/Perl2/verify.pl'
2023-07-25T18:18:59,145 adding 'bionetgen/bng-mac/Perl2/Aux2/MakeBin.pl'
2023-07-25T18:18:59,147 adding 'bionetgen/bng-mac/Perl2/Aux2/bnglstat.pl'
2023-07-25T18:18:59,150 adding 'bionetgen/bng-mac/Perl2/Aux2/count_blocks.pl'
2023-07-25T18:18:59,152 adding 'bionetgen/bng-mac/Perl2/Aux2/count_lines.pl'
2023-07-25T18:18:59,155 adding 'bionetgen/bng-mac/Perl2/Aux2/countdown.pl'
2023-07-25T18:18:59,157 adding 'bionetgen/bng-mac/Perl2/Aux2/diff_cdat.pl'
2023-07-25T18:18:59,160 adding 'bionetgen/bng-mac/Perl2/Aux2/express.pl'
2023-07-25T18:18:59,163 adding 'bionetgen/bng-mac/Perl2/Aux2/express_main.pl'
2023-07-25T18:18:59,166 adding 'bionetgen/bng-mac/Perl2/Aux2/group_size.pl'
2023-07-25T18:18:59,169 adding 'bionetgen/bng-mac/Perl2/Aux2/runBNG.pl'
2023-07-25T18:18:59,171 adding 'bionetgen/bng-mac/Perl2/Aux2/test.pl'
2023-07-25T18:18:59,174 adding 'bionetgen/bng-mac/Perl2/Aux2/test_compartment.pl'
2023-07-25T18:18:59,176 adding 'bionetgen/bng-mac/Perl2/Aux2/test_molorder.pl'
2023-07-25T18:18:59,179 adding 'bionetgen/bng-mac/Perl2/Aux2/test_redirect.pl'
2023-07-25T18:18:59,181 adding 'bionetgen/bng-mac/Perl2/Aux2/test_sub.pl'
2023-07-25T18:18:59,185 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/ABC_example.txt'
2023-07-25T18:18:59,188 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-07-25T18:18:59,191 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-07-25T18:18:59,194 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-07-25T18:18:59,197 adding 'bionetgen/bng-mac/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-07-25T18:18:59,201 adding 'bionetgen/bng-mac/Perl2/Visualization/ContactMap.pm'
2023-07-25T18:18:59,215 adding 'bionetgen/bng-mac/Perl2/Visualization/GML.pm'
2023-07-25T18:18:59,224 adding 'bionetgen/bng-mac/Perl2/Visualization/NetworkGraph.pm'
2023-07-25T18:18:59,229 adding 'bionetgen/bng-mac/Perl2/Visualization/ProcessGraph.pm'
2023-07-25T18:18:59,232 adding 'bionetgen/bng-mac/Perl2/Visualization/README'
2023-07-25T18:18:59,235 adding 'bionetgen/bng-mac/Perl2/Visualization/RINF.pm'
2023-07-25T18:18:59,241 adding 'bionetgen/bng-mac/Perl2/Visualization/StructureGraph.pm'
2023-07-25T18:18:59,244 adding 'bionetgen/bng-mac/Perl2/Visualization/VisOptParse.pm'
2023-07-25T18:18:59,263 adding 'bionetgen/bng-mac/Perl2/Visualization/Viz.pm'
2023-07-25T18:18:59,270 adding 'bionetgen/bng-mac/Perl2/Visualization/analyze.pl'
2023-07-25T18:18:59,274 adding 'bionetgen/bng-mac/Perl2/Visualization/readGML.pl'
2023-07-25T18:18:59,278 adding 'bionetgen/bng-mac/Perl2/Visualization/visualize.pl'
2023-07-25T18:18:59,290 adding 'bionetgen/bng-mac/Perl2/XML/TreePP.pm'
2023-07-25T18:18:59,935 adding 'bionetgen/bng-mac/bin/NFsim'
2023-07-25T18:19:00,581 adding 'bionetgen/bng-mac/bin/run_network'
2023-07-25T18:19:00,623 adding 'bionetgen/bng-mac/bin/sundials-config'
2023-07-25T18:19:00,628 adding 'bionetgen/bng-win/BNG2.pl'
2023-07-25T18:19:00,631 adding 'bionetgen/bng-win/VERSION'
2023-07-25T18:19:00,656 adding 'bionetgen/bng-win/Perl2/BNGAction.pm'
2023-07-25T18:19:00,660 adding 'bionetgen/bng-win/Perl2/BNGMessages.pm'
2023-07-25T18:19:00,684 adding 'bionetgen/bng-win/Perl2/BNGModel.pm'
2023-07-25T18:19:00,690 adding 'bionetgen/bng-win/Perl2/BNGOptions.pm'
2023-07-25T18:19:00,726 adding 'bionetgen/bng-win/Perl2/BNGOutput.pm'
2023-07-25T18:19:00,735 adding 'bionetgen/bng-win/Perl2/BNGUtils.pm'
2023-07-25T18:19:00,738 adding 'bionetgen/bng-win/Perl2/Cache.pm'
2023-07-25T18:19:00,742 adding 'bionetgen/bng-win/Perl2/CartesianProduct.pm'
2023-07-25T18:19:00,747 adding 'bionetgen/bng-win/Perl2/Compartment.pm'
2023-07-25T18:19:00,751 adding 'bionetgen/bng-win/Perl2/CompartmentList.pm'
2023-07-25T18:19:00,759 adding 'bionetgen/bng-win/Perl2/Component.pm'
2023-07-25T18:19:00,765 adding 'bionetgen/bng-win/Perl2/ComponentType.pm'
2023-07-25T18:19:00,769 adding 'bionetgen/bng-win/Perl2/Console.pm'
2023-07-25T18:19:00,772 adding 'bionetgen/bng-win/Perl2/EnergyPattern.pm'
2023-07-25T18:19:00,793 adding 'bionetgen/bng-win/Perl2/Expression.pm'
2023-07-25T18:19:00,801 adding 'bionetgen/bng-win/Perl2/Function.pm'
2023-07-25T18:19:00,812 adding 'bionetgen/bng-win/Perl2/HNauty.pm'
2023-07-25T18:19:00,815 adding 'bionetgen/bng-win/Perl2/MacroBNG2.pl'
2023-07-25T18:19:00,842 adding 'bionetgen/bng-win/Perl2/MacroBNGModel.pm'
2023-07-25T18:19:00,849 adding 'bionetgen/bng-win/Perl2/Map.pm'
2023-07-25T18:19:00,854 adding 'bionetgen/bng-win/Perl2/ModelWrapper.pm'
2023-07-25T18:19:00,860 adding 'bionetgen/bng-win/Perl2/Molecule.pm'
2023-07-25T18:19:00,866 adding 'bionetgen/bng-win/Perl2/MoleculeType.pm'
2023-07-25T18:19:00,870 adding 'bionetgen/bng-win/Perl2/MoleculeTypesList.pm'
2023-07-25T18:19:00,876 adding 'bionetgen/bng-win/Perl2/Observable.pm'
2023-07-25T18:19:00,880 adding 'bionetgen/bng-win/Perl2/Param.pm'
2023-07-25T18:19:00,889 adding 'bionetgen/bng-win/Perl2/ParamList.pm'
2023-07-25T18:19:00,892 adding 'bionetgen/bng-win/Perl2/Population.pm'
2023-07-25T18:19:00,895 adding 'bionetgen/bng-win/Perl2/PopulationList.pm'
2023-07-25T18:19:00,907 adding 'bionetgen/bng-win/Perl2/RateLaw.pm'
2023-07-25T18:19:00,915 adding 'bionetgen/bng-win/Perl2/RefineRule.pm'
2023-07-25T18:19:00,921 adding 'bionetgen/bng-win/Perl2/Rxn.pm'
2023-07-25T18:19:00,926 adding 'bionetgen/bng-win/Perl2/RxnList.pm'
2023-07-25T18:19:00,972 adding 'bionetgen/bng-win/Perl2/RxnRule.pm'
2023-07-25T18:19:00,980 adding 'bionetgen/bng-win/Perl2/SBMLMultiAux.pm'
2023-07-25T18:19:00,984 adding 'bionetgen/bng-win/Perl2/Species.pm'
2023-07-25T18:19:01,019 adding 'bionetgen/bng-win/Perl2/SpeciesGraph.pm'
2023-07-25T18:19:01,028 adding 'bionetgen/bng-win/Perl2/SpeciesList.pm'
2023-07-25T18:19:01,031 adding 'bionetgen/bng-win/Perl2/XMLReader.pm'
2023-07-25T18:19:01,035 adding 'bionetgen/bng-win/Perl2/auto_hpp.pl'
2023-07-25T18:19:01,040 adding 'bionetgen/bng-win/Perl2/diff_net.pl'
2023-07-25T18:19:01,046 adding 'bionetgen/bng-win/Perl2/sample_vars_2.pl'
2023-07-25T18:19:01,051 adding 'bionetgen/bng-win/Perl2/scan_var.pl'
2023-07-25T18:19:01,054 adding 'bionetgen/bng-win/Perl2/test_cartesianproduct.pl'
2023-07-25T18:19:01,057 adding 'bionetgen/bng-win/Perl2/verify.pl'
2023-07-25T18:19:01,062 adding 'bionetgen/bng-win/Perl2/Aux2/MakeBin.pl'
2023-07-25T18:19:01,064 adding 'bionetgen/bng-win/Perl2/Aux2/bnglstat.pl'
2023-07-25T18:19:01,067 adding 'bionetgen/bng-win/Perl2/Aux2/count_blocks.pl'
2023-07-25T18:19:01,070 adding 'bionetgen/bng-win/Perl2/Aux2/count_lines.pl'
2023-07-25T18:19:01,072 adding 'bionetgen/bng-win/Perl2/Aux2/countdown.pl'
2023-07-25T18:19:01,075 adding 'bionetgen/bng-win/Perl2/Aux2/diff_cdat.pl'
2023-07-25T18:19:01,078 adding 'bionetgen/bng-win/Perl2/Aux2/express.pl'
2023-07-25T18:19:01,081 adding 'bionetgen/bng-win/Perl2/Aux2/express_main.pl'
2023-07-25T18:19:01,084 adding 'bionetgen/bng-win/Perl2/Aux2/group_size.pl'
2023-07-25T18:19:01,087 adding 'bionetgen/bng-win/Perl2/Aux2/runBNG.pl'
2023-07-25T18:19:01,090 adding 'bionetgen/bng-win/Perl2/Aux2/test.pl'
2023-07-25T18:19:01,093 adding 'bionetgen/bng-win/Perl2/Aux2/test_compartment.pl'
2023-07-25T18:19:01,095 adding 'bionetgen/bng-win/Perl2/Aux2/test_molorder.pl'
2023-07-25T18:19:01,098 adding 'bionetgen/bng-win/Perl2/Aux2/test_redirect.pl'
2023-07-25T18:19:01,101 adding 'bionetgen/bng-win/Perl2/Aux2/test_sub.pl'
2023-07-25T18:19:01,105 adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/ABC_example.txt'
2023-07-25T18:19:01,108 adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Boolean2BNGL.pl'
2023-07-25T18:19:01,111 adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Nov2013_LAH.txt'
2023-07-25T18:19:01,114 adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_Oct2013.txt'
2023-07-25T18:19:01,117 adding 'bionetgen/bng-win/Perl2/Boolean2BNGL/Tcell_model_v16.txt'
2023-07-25T18:19:01,122 adding 'bionetgen/bng-win/Perl2/Visualization/ContactMap.pm'
2023-07-25T18:19:01,135 adding 'bionetgen/bng-win/Perl2/Visualization/GML.pm'
2023-07-25T18:19:01,145 adding 'bionetgen/bng-win/Perl2/Visualization/NetworkGraph.pm'
2023-07-25T18:19:01,151 adding 'bionetgen/bng-win/Perl2/Visualization/ProcessGraph.pm'
2023-07-25T18:19:01,154 adding 'bionetgen/bng-win/Perl2/Visualization/README'
2023-07-25T18:19:01,157 adding 'bionetgen/bng-win/Perl2/Visualization/RINF.pm'
2023-07-25T18:19:01,163 adding 'bionetgen/bng-win/Perl2/Visualization/StructureGraph.pm'
2023-07-25T18:19:01,167 adding 'bionetgen/bng-win/Perl2/Visualization/VisOptParse.pm'
2023-07-25T18:19:01,182 adding 'bionetgen/bng-win/Perl2/Visualization/Viz.pm'
2023-07-25T18:19:01,190 adding 'bionetgen/bng-win/Perl2/Visualization/analyze.pl'
2023-07-25T18:19:01,194 adding 'bionetgen/bng-win/Perl2/Visualization/readGML.pl'
2023-07-25T18:19:01,198 adding 'bionetgen/bng-win/Perl2/Visualization/visualize.pl'
2023-07-25T18:19:01,210 adding 'bionetgen/bng-win/Perl2/XML/TreePP.pm'
2023-07-25T18:19:02,060 adding 'bionetgen/bng-win/bin/NFsim.exe'
2023-07-25T18:19:02,131 adding 'bionetgen/bng-win/bin/cyggcc_s-seh-1.dll'
2023-07-25T18:19:02,799 adding 'bionetgen/bng-win/bin/cygstdc++-6.dll'
2023-07-25T18:19:04,136 adding 'bionetgen/bng-win/bin/cygwin1.dll'
2023-07-25T18:19:04,233 adding 'bionetgen/bng-win/bin/cygz.dll'
2023-07-25T18:19:04,540 adding 'bionetgen/bng-win/bin/cygzstd-1.dll'
2023-07-25T18:19:04,721 adding 'bionetgen/bng-win/bin/libgcc_s_seh-1.dll'
2023-07-25T18:19:05,426 adding 'bionetgen/bng-win/bin/libstdc++-6.dll'
2023-07-25T18:19:05,503 adding 'bionetgen/bng-win/bin/libwinpthread-1.dll'
2023-07-25T18:19:09,649 adding 'bionetgen/bng-win/bin/run_network.exe'
2023-07-25T18:19:09,903 adding 'bionetgen/bng-win/bin/sundials-config'
2023-07-25T18:19:09,908 adding 'bionetgen/core/__init__.py'
2023-07-25T18:19:09,911 adding 'bionetgen/core/defaults.py'
2023-07-25T18:19:09,915 adding 'bionetgen/core/exc.py'
2023-07-25T18:19:09,919 adding 'bionetgen/core/main.py'
2023-07-25T18:19:09,923 adding 'bionetgen/core/notebook.py'
2023-07-25T18:19:09,926 adding 'bionetgen/core/version.py'
2023-07-25T18:19:09,931 adding 'bionetgen/core/tools/__init__.py'
2023-07-25T18:19:09,935 adding 'bionetgen/core/tools/cli.py'
2023-07-25T18:19:09,943 adding 'bionetgen/core/tools/gdiff.py'
2023-07-25T18:19:09,948 adding 'bionetgen/core/tools/info.py'
2023-07-25T18:19:09,952 adding 'bionetgen/core/tools/plot.py'
2023-07-25T18:19:09,956 adding 'bionetgen/core/tools/result.py'
2023-07-25T18:19:09,960 adding 'bionetgen/core/tools/visualize.py'
2023-07-25T18:19:09,965 adding 'bionetgen/core/utils/__init__.py'
2023-07-25T18:19:09,969 adding 'bionetgen/core/utils/logging.py'
2023-07-25T18:19:09,975 adding 'bionetgen/core/utils/utils.py'
2023-07-25T18:19:09,979 adding 'bionetgen/modelapi/__init__.py'
2023-07-25T18:19:09,986 adding 'bionetgen/modelapi/blocks.py'
2023-07-25T18:19:09,991 adding 'bionetgen/modelapi/bngfile.py'
2023-07-25T18:19:09,996 adding 'bionetgen/modelapi/bngparser.py'
2023-07-25T18:19:10,001 adding 'bionetgen/modelapi/model.py'
2023-07-25T18:19:10,008 adding 'bionetgen/modelapi/pattern.py'
2023-07-25T18:19:10,013 adding 'bionetgen/modelapi/pattern_reader.py'
2023-07-25T18:19:10,016 adding 'bionetgen/modelapi/rulemod.py'
2023-07-25T18:19:10,019 adding 'bionetgen/modelapi/runner.py'
2023-07-25T18:19:10,024 adding 'bionetgen/modelapi/structs.py'
2023-07-25T18:19:10,032 adding 'bionetgen/modelapi/xmlparsers.py'
2023-07-25T18:19:10,036 adding 'bionetgen/network/__init__.py'
2023-07-25T18:19:10,041 adding 'bionetgen/network/blocks.py'
2023-07-25T18:19:10,045 adding 'bionetgen/network/network.py'
2023-07-25T18:19:10,048 adding 'bionetgen/network/networkparser.py'
2023-07-25T18:19:10,052 adding 'bionetgen/network/structs.py'
2023-07-25T18:19:10,056 adding 'bionetgen/simulator/__init__.py'
2023-07-25T18:19:10,059 adding 'bionetgen/simulator/bngsimulator.py'
2023-07-25T18:19:10,063 adding 'bionetgen/simulator/csimulator.py'
2023-07-25T18:19:10,066 adding 'bionetgen/simulator/librrsimulator.py'
2023-07-25T18:19:10,069 adding 'bionetgen/simulator/simulators.py'
2023-07-25T18:19:10,074 adding 'bionetgen-0.8.1.dist-info/LICENSE'
2023-07-25T18:19:10,078 adding 'bionetgen-0.8.1.dist-info/METADATA'
2023-07-25T18:19:10,080 adding 'bionetgen-0.8.1.dist-info/WHEEL'
2023-07-25T18:19:10,082 adding 'bionetgen-0.8.1.dist-info/entry_points.txt'
2023-07-25T18:19:10,084 adding 'bionetgen-0.8.1.dist-info/top_level.txt'
2023-07-25T18:19:10,097 adding 'bionetgen-0.8.1.dist-info/RECORD'
2023-07-25T18:19:10,493 removing build/bdist.linux-armv7l/wheel
2023-07-25T18:19:10,862 Building wheel for bionetgen (setup.py): finished with status 'done'
2023-07-25T18:19:11,201 Created wheel for bionetgen: filename=bionetgen-0.8.1-py3-none-any.whl size=11214525 sha256=8f7299d46a5e408f46b306dcdbd75bfcdbbe4200195f84c035a24154009459f0
2023-07-25T18:19:11,204 Stored in directory: /tmp/pip-ephem-wheel-cache-0onipaty/wheels/48/39/83/7bd476aea3b6bd74525986ae360c705858963726fbd4d3a4f6
2023-07-25T18:19:11,272 Successfully built bionetgen
2023-07-25T18:19:12,113 Removed build tracker: '/tmp/pip-build-tracker-q2sf0apd'