2023-07-26T08:18:04,207 Created temporary directory: /tmp/pip-build-tracker-_hq4310x 2023-07-26T08:18:04,210 Initialized build tracking at /tmp/pip-build-tracker-_hq4310x 2023-07-26T08:18:04,210 Created build tracker: /tmp/pip-build-tracker-_hq4310x 2023-07-26T08:18:04,211 Entered build tracker: /tmp/pip-build-tracker-_hq4310x 2023-07-26T08:18:04,212 Created temporary directory: /tmp/pip-wheel-v0xw0zl0 2023-07-26T08:18:04,220 Created temporary directory: /tmp/pip-ephem-wheel-cache-0gc_h4ok 2023-07-26T08:18:04,273 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-26T08:18:04,281 2 location(s) to search for versions of damona: 2023-07-26T08:18:04,281 * https://pypi.org/simple/damona/ 2023-07-26T08:18:04,281 * https://www.piwheels.org/simple/damona/ 2023-07-26T08:18:04,282 Fetching project page and analyzing links: https://pypi.org/simple/damona/ 2023-07-26T08:18:04,283 Getting page https://pypi.org/simple/damona/ 2023-07-26T08:18:04,287 Found index url https://pypi.org/simple/ 2023-07-26T08:18:04,477 Fetched page https://pypi.org/simple/damona/ as application/vnd.pypi.simple.v1+json 2023-07-26T08:18:04,490 Found link https://files.pythonhosted.org/packages/cd/9e/27ac1c5e27caa58f2d161dff75c5c4cdd92670440b07e7709802a9459b9c/damona-0.1.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.1.0 2023-07-26T08:18:04,491 Found link https://files.pythonhosted.org/packages/c9/20/7fe4d2f1c34300ed845a3b033a8cd8b3de72b82a25599330b10e2317ca48/damona-0.1.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.1.1 2023-07-26T08:18:04,492 Found link https://files.pythonhosted.org/packages/36/9b/153b2e8849b6cf3b78ac13c3e30fbd4f1774c31b7b34cb849eb3a14bf69c/damona-0.2.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.2.0 2023-07-26T08:18:04,493 Found link https://files.pythonhosted.org/packages/5d/85/e936fbc729383625e399b7dabd3238995c915084986ec573588855c921ee/damona-0.2.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.2.1 2023-07-26T08:18:04,494 Found link https://files.pythonhosted.org/packages/d8/72/c819e18fd5dcf8abe904e97240b4adb023e80b73a311ca4cddd0f8b6509c/damona-0.2.2.tar.gz (from https://pypi.org/simple/damona/), version: 0.2.2 2023-07-26T08:18:04,494 Found link https://files.pythonhosted.org/packages/2a/2f/3eca4d23aad1c0df2a1f708f49fd68de86b47fb3ff0b7270182074adbe24/damona-0.3.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.3.0 2023-07-26T08:18:04,495 Found link https://files.pythonhosted.org/packages/a4/85/cf3ba30aadaf7e322c200ff61874eb24a3ded6d64ad308d15760d26338f1/damona-0.3.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.3.1 2023-07-26T08:18:04,496 Found link https://files.pythonhosted.org/packages/c2/ef/1a8417b608f9a1f46749cea5ef2cd0bef0e2e9449182baa65ef403b9bd6e/damona-0.4.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.4.0 2023-07-26T08:18:04,496 Found link https://files.pythonhosted.org/packages/66/87/cc314bac96ca0afc29e95d91a07d70c56df5c37cb4209f8bfc4eb959418a/damona-0.4.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.4.1 2023-07-26T08:18:04,497 Found link https://files.pythonhosted.org/packages/50/5a/2b91d89732ad7eabd61d2060de0ecc94c4a04c25999f199d2cb93ff943e5/damona-0.4.2.tar.gz (from https://pypi.org/simple/damona/), version: 0.4.2 2023-07-26T08:18:04,498 Found link https://files.pythonhosted.org/packages/e5/d8/0d4fe942e4a6dd2b5a45ac16a038f99dbea115dde61c41aec5f2815ef2a6/damona-0.4.3.tar.gz (from https://pypi.org/simple/damona/), version: 0.4.3 2023-07-26T08:18:04,498 Found link https://files.pythonhosted.org/packages/9e/e0/d085c328e8cc39ca40e2176f3c5c5ffeb66e1271abeeb36f863c5acb8bc1/damona-0.5.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.0 2023-07-26T08:18:04,499 Found link https://files.pythonhosted.org/packages/73/65/3e225ffc73fe435cc40b8658c3838e18b66bac46c2f2227c858c1751b485/damona-0.5.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.1 2023-07-26T08:18:04,500 Found link https://files.pythonhosted.org/packages/09/b4/f0570169435b2629cac80df83e3140b82a480cdfd795f8f6c54c4c36d53e/damona-0.5.2.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.2 2023-07-26T08:18:04,501 Found link https://files.pythonhosted.org/packages/34/85/cce2fff4d9e5c90ac7dc665db03e0c134fd23930d6fe7168e3fd48a7899a/damona-0.5.3.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.3 2023-07-26T08:18:04,501 Found link https://files.pythonhosted.org/packages/94/69/89c64bbc8ccd86ac96042fd140a8c0a39f0168d685f82445361e46d64734/damona-0.5.4.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.4 2023-07-26T08:18:04,502 Found link https://files.pythonhosted.org/packages/c0/d8/0edd345b42fb10ec5615463a6362c71abbf7182ae0a64a366586a752924a/damona-0.5.5.tar.gz (from https://pypi.org/simple/damona/), version: 0.5.5 2023-07-26T08:18:04,503 Found link https://files.pythonhosted.org/packages/21/64/ec1a9f94d2727191a6b09dddbf464cb190a1c94a7016f5b7d0db7c6ab65a/damona-0.6.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.6.0 2023-07-26T08:18:04,503 Found link https://files.pythonhosted.org/packages/02/98/e4f8fb789585c125ad574845a8f43b6996b97979995cf77f088b6e166a57/damona-0.7.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.7.0 2023-07-26T08:18:04,504 Found link https://files.pythonhosted.org/packages/3d/af/463f5754f4f79152d2ca30c232f95364848b6eccc4e8da0bcd039797c13f/damona-0.7.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.7.1 2023-07-26T08:18:04,505 Found link https://files.pythonhosted.org/packages/b3/e4/7c0cb559030b0a10ef0b8b0e89778fee71357d01c681ff3a8e31633f139f/damona-0.8.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.8.0 2023-07-26T08:18:04,506 Found link https://files.pythonhosted.org/packages/64/52/7792503fca117af6cd5b401c8cc162c24b1b066630c398d104a9bf1edef8/damona-0.8.1.tar.gz (from https://pypi.org/simple/damona/), version: 0.8.1 2023-07-26T08:18:04,506 Found link https://files.pythonhosted.org/packages/b9/71/804fbd1dafb4f7a2789494ce99f747050496509ba9c7b4ab750c2a1d15cc/damona-0.8.2.tar.gz (from https://pypi.org/simple/damona/), version: 0.8.2 2023-07-26T08:18:04,507 Found link https://files.pythonhosted.org/packages/74/c1/7e180bf7870c0ab1a09a753eec3dab56a3ab1537d33dc20e4a3862834654/damona-0.8.3.tar.gz (from https://pypi.org/simple/damona/), version: 0.8.3 2023-07-26T08:18:04,508 Found link https://files.pythonhosted.org/packages/95/92/8f20d85d858e9cf92c5e0a113d38f0d8df6517cc55fbe811c54851fb20bd/damona-0.9.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.9.0 2023-07-26T08:18:04,508 Found link https://files.pythonhosted.org/packages/46/3e/c642cb6cfd4c1436a66d646f1f5171c0237442f94d841ae97ba48b7cd928/damona-0.10.0.tar.gz (from https://pypi.org/simple/damona/), version: 0.10.0 2023-07-26T08:18:04,509 Fetching project page and analyzing links: https://www.piwheels.org/simple/damona/ 2023-07-26T08:18:04,510 Getting page https://www.piwheels.org/simple/damona/ 2023-07-26T08:18:04,512 Found index url https://www.piwheels.org/simple/ 2023-07-26T08:18:04,733 Fetched page https://www.piwheels.org/simple/damona/ as text/html 2023-07-26T08:18:04,750 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.9.0-py3-none-any.whl#sha256=d0ea32820c386b85f3bd0c765ea8e1f1a265e6fd779ede46ac4bc325e62abbfa (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,750 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.8.3-py3-none-any.whl#sha256=458347800886c1754d51140bd9b3445568dee3e2fe0cacb1655fadf63666acec (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,751 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.8.2-py3-none-any.whl#sha256=cb1d248f7ca0e043cca2bb9abbe636b6dfc45f4c9dee9ab49505e014ab23cd84 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,752 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.8.1-py3-none-any.whl#sha256=1876dc816c6b55bdd4e26c3d55f550985eaaece2dd0b51e91198fcb9e23a6bce (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,752 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.8.0-py3-none-any.whl#sha256=2e21d72a65141ba9d76a6971a8d8c1618964ddc7b0e126ea8282260b974c3b65 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,753 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.7.1-py3-none-any.whl#sha256=5e66c86b9d54bddb8e202de5271f8eee2126fee535b1d9907ff06574405c9ee5 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,753 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.7.0-py3-none-any.whl#sha256=5042f04e5365017dbee446034c186e0e74a6e10e69b97159d4e7583d6eb978b8 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,754 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.6.0-py3-none-any.whl#sha256=0c08f84a6315a8a73a113852e981e28107e73b00ea14400876449661d4f4f5ff (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,754 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.5-py3-none-any.whl#sha256=250ccf2df08abd139089d4fb2e79006e5bd203c3a0a52f44d1f9284a73f0d925 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,755 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.4-py3-none-any.whl#sha256=d6be5e498a49e3228ff56e0445cf57642d10bfb8a523b4f6839f5998051feb50 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,755 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.3-py3-none-any.whl#sha256=c4e616966557b5bdf1adb7658f29a695e17d0f74b00c292ec912da0a37907ba8 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,756 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.2-py3-none-any.whl#sha256=96b9d98f2692a8ed1bd3d044f9cbd041d99762fcc2003f9e4c657e7bb885a061 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,756 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.1-py3-none-any.whl#sha256=5a3fb6b370b13c5085238e60671c083d51b2afa8ca94314f8c382b46b4fecc0a (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,757 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.5.0-py3-none-any.whl#sha256=2b105c2097bf8572e7d57f7b842123852413d4d1266886b21d4f1e94b0d25109 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,757 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.3-py3-none-any.whl#sha256=7b05aa70e5bb4664074b7b3d9b63873f9aa72e29217bf7a971614685c338107e (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,758 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.2-py3-none-any.whl#sha256=326ee5f5e021f463128cc57ff6f3ff6129f46271dfaf4f823a5645f2e94d7aa4 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,758 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.1-py3-none-any.whl#sha256=87fafcd2a349a2c12e3f28edb48015a402a3e50f89c4da8072167483d0d7a200 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,759 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.4.0-py3-none-any.whl#sha256=131eb91e5a14664d9a717ad2a12025787ed02a761336318d57de6076bbfe0695 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,759 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.3.1-py3-none-any.whl#sha256=934799d1cf5a920bc199416dc79952e268359cc4ad20d561571fd85e4c2d84dc (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,760 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.3.0-py3-none-any.whl#sha256=b9bad2b5e81d6bdca4b895a2d7dfcd19a5450509889904d9840f447a3a5a5f11 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,760 Skipping link: No binaries permitted for damona: https://www.piwheels.org/simple/damona/damona-0.2.2-py3-none-any.whl#sha256=9165891e105689e76d95ddf46067837a1ee8b13d1d3af36b5af846c1b8ee4b92 (from https://www.piwheels.org/simple/damona/) 2023-07-26T08:18:04,761 Skipping link: not a file: https://www.piwheels.org/simple/damona/ 2023-07-26T08:18:04,762 Skipping link: not a file: https://pypi.org/simple/damona/ 2023-07-26T08:18:04,803 Given no hashes to check 1 links for project 'damona': discarding no candidates 2023-07-26T08:18:04,839 Collecting damona==0.10.0 2023-07-26T08:18:04,843 Created temporary directory: /tmp/pip-unpack-exlkx06z 2023-07-26T08:18:05,027 Downloading damona-0.10.0.tar.gz (476 kB) 2023-07-26T08:18:06,613 Added damona==0.10.0 from https://files.pythonhosted.org/packages/46/3e/c642cb6cfd4c1436a66d646f1f5171c0237442f94d841ae97ba48b7cd928/damona-0.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-_hq4310x' 2023-07-26T08:18:06,617 Running setup.py (path:/tmp/pip-wheel-v0xw0zl0/damona_df24782d25ee45d586e1df422f538528/setup.py) egg_info for package damona 2023-07-26T08:18:06,618 Created temporary directory: /tmp/pip-pip-egg-info-ddxjr5kf 2023-07-26T08:18:06,619 Preparing metadata (setup.py): started 2023-07-26T08:18:06,621 Running command python setup.py egg_info 2023-07-26T08:18:08,903 running egg_info 2023-07-26T08:18:08,907 creating /tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info 2023-07-26T08:18:08,971 writing /tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info/PKG-INFO 2023-07-26T08:18:08,977 writing dependency_links to /tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info/dependency_links.txt 2023-07-26T08:18:08,981 writing entry points to /tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info/entry_points.txt 2023-07-26T08:18:08,984 writing requirements to /tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info/requires.txt 2023-07-26T08:18:08,986 writing top-level names to /tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info/top_level.txt 2023-07-26T08:18:08,989 writing manifest file '/tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info/SOURCES.txt' 2023-07-26T08:18:09,355 reading manifest file '/tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info/SOURCES.txt' 2023-07-26T08:18:09,358 reading manifest template 'MANIFEST.in' 2023-07-26T08:18:09,362 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-07-26T08:18:09,365 warning: no previously-included files matching '*pyc' found under directory '*' 2023-07-26T08:18:09,368 warning: no previously-included files matching 'test' found under directory '*' 2023-07-26T08:18:09,371 warning: no files found matching '.requirements_dev.txt' 2023-07-26T08:18:09,375 no previously-included directories found matching 'test' 2023-07-26T08:18:09,376 no previously-included directories found matching 'doc' 2023-07-26T08:18:09,377 adding license file 'LICENSE' 2023-07-26T08:18:09,402 writing manifest file '/tmp/pip-pip-egg-info-ddxjr5kf/damona.egg-info/SOURCES.txt' 2023-07-26T08:18:09,566 Preparing metadata (setup.py): finished with status 'done' 2023-07-26T08:18:09,584 Source in /tmp/pip-wheel-v0xw0zl0/damona_df24782d25ee45d586e1df422f538528 has version 0.10.0, which satisfies requirement damona==0.10.0 from https://files.pythonhosted.org/packages/46/3e/c642cb6cfd4c1436a66d646f1f5171c0237442f94d841ae97ba48b7cd928/damona-0.10.0.tar.gz 2023-07-26T08:18:09,586 Removed damona==0.10.0 from https://files.pythonhosted.org/packages/46/3e/c642cb6cfd4c1436a66d646f1f5171c0237442f94d841ae97ba48b7cd928/damona-0.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-_hq4310x' 2023-07-26T08:18:09,601 Created temporary directory: /tmp/pip-unpack-wf0lbezy 2023-07-26T08:18:09,603 Building wheels for collected packages: damona 2023-07-26T08:18:09,612 Created temporary directory: /tmp/pip-wheel-zqzg9tiu 2023-07-26T08:18:09,613 Building wheel for damona (setup.py): started 2023-07-26T08:18:09,615 Destination directory: /tmp/pip-wheel-zqzg9tiu 2023-07-26T08:18:09,615 Running command python setup.py bdist_wheel 2023-07-26T08:18:11,958 running bdist_wheel 2023-07-26T08:18:12,730 running build 2023-07-26T08:18:12,731 running build_py 2023-07-26T08:18:12,803 creating build 2023-07-26T08:18:12,804 creating build/lib 2023-07-26T08:18:12,806 creating build/lib/damona 2023-07-26T08:18:12,809 copying damona/registry.py -> build/lib/damona 2023-07-26T08:18:12,814 copying damona/install.py -> build/lib/damona 2023-07-26T08:18:12,819 copying damona/__init__.py -> build/lib/damona 2023-07-26T08:18:12,823 copying damona/admin.py -> build/lib/damona 2023-07-26T08:18:12,827 copying damona/script.py -> build/lib/damona 2023-07-26T08:18:12,833 copying damona/common.py -> build/lib/damona 2023-07-26T08:18:12,838 copying damona/zenodo.py -> build/lib/damona 2023-07-26T08:18:12,843 copying damona/config.py -> build/lib/damona 2023-07-26T08:18:12,848 copying damona/environ.py -> build/lib/damona 2023-07-26T08:18:12,854 copying damona/builders.py -> build/lib/damona 2023-07-26T08:18:12,859 copying damona/utils.py -> build/lib/damona 2023-07-26T08:18:12,864 creating build/lib/damona/shell 2023-07-26T08:18:12,866 copying damona/shell/__init__.py -> build/lib/damona/shell 2023-07-26T08:18:12,871 creating build/lib/damona/library 2023-07-26T08:18:12,873 copying damona/library/__init__.py -> build/lib/damona/library 2023-07-26T08:18:12,879 creating build/lib/damona/software 2023-07-26T08:18:12,881 copying damona/software/__init__.py -> build/lib/damona/software 2023-07-26T08:18:12,886 creating build/lib/damona/papers 2023-07-26T08:18:12,888 copying damona/papers/__init__.py -> build/lib/damona/papers 2023-07-26T08:18:12,892 creating build/lib/damona/biocontainers 2023-07-26T08:18:12,894 copying damona/biocontainers/__init__.py -> build/lib/damona/biocontainers 2023-07-26T08:18:12,898 creating build/lib/damona/shell/zsh 2023-07-26T08:18:12,899 copying damona/shell/zsh/__init__.py -> build/lib/damona/shell/zsh 2023-07-26T08:18:12,903 creating build/lib/damona/shell/bash 2023-07-26T08:18:12,905 copying damona/shell/bash/__init__.py -> build/lib/damona/shell/bash 2023-07-26T08:18:13,047 copying damona/shell/zsh/damona.zsh -> build/lib/damona/shell/zsh 2023-07-26T08:18:13,054 copying damona/shell/bash/damona.sh -> build/lib/damona/shell/bash 2023-07-26T08:18:13,058 creating build/lib/damona/shell/fish 2023-07-26T08:18:13,060 copying damona/shell/fish/damona.fish -> build/lib/damona/shell/fish 2023-07-26T08:18:13,064 creating build/lib/damona/library/micromamba 2023-07-26T08:18:13,066 copying damona/library/micromamba/Singularity.micromamba_1.4.3 -> build/lib/damona/library/micromamba 2023-07-26T08:18:13,070 copying damona/library/micromamba/Singularity.micromamba_1.4.4 -> build/lib/damona/library/micromamba 2023-07-26T08:18:13,074 creating build/lib/damona/library/conda 2023-07-26T08:18:13,076 copying damona/library/conda/Singularity.conda_4.9.3 -> build/lib/damona/library/conda 2023-07-26T08:18:13,080 copying damona/library/conda/Singularity.conda_4.9.2 -> build/lib/damona/library/conda 2023-07-26T08:18:13,084 copying damona/library/conda/Singularity.conda_4.7.12 -> build/lib/damona/library/conda 2023-07-26T08:18:13,089 copying damona/library/conda/Singularity.conda_23.5.0 -> build/lib/damona/library/conda 2023-07-26T08:18:13,093 creating build/lib/damona/library/R 2023-07-26T08:18:13,094 copying damona/library/R/Singularity.R_3.6.3 -> build/lib/damona/library/R 2023-07-26T08:18:13,099 copying damona/library/R/Singularity.R_4.0.2 -> build/lib/damona/library/R 2023-07-26T08:18:13,103 creating build/lib/damona/library/ubuntu 2023-07-26T08:18:13,104 copying damona/library/ubuntu/Singularity.ubuntu_18.04 -> build/lib/damona/library/ubuntu 2023-07-26T08:18:13,109 copying damona/library/ubuntu/Singularity.ubuntu_16.04 -> build/lib/damona/library/ubuntu 2023-07-26T08:18:13,113 copying damona/library/micromamba/registry.yaml -> build/lib/damona/library/micromamba 2023-07-26T08:18:13,117 copying damona/library/conda/registry.yaml -> build/lib/damona/library/conda 2023-07-26T08:18:13,121 copying damona/library/R/registry.yaml -> build/lib/damona/library/R 2023-07-26T08:18:13,124 copying damona/library/ubuntu/registry.yaml -> build/lib/damona/library/ubuntu 2023-07-26T08:18:13,129 creating build/lib/damona/software/sequana_perl_tools 2023-07-26T08:18:13,130 copying damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0 -> build/lib/damona/software/sequana_perl_tools 2023-07-26T08:18:13,135 copying damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.3.0 -> build/lib/damona/software/sequana_perl_tools 2023-07-26T08:18:13,139 copying damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.2.0 -> build/lib/damona/software/sequana_perl_tools 2023-07-26T08:18:13,143 creating build/lib/damona/software/nanopolish 2023-07-26T08:18:13,145 copying damona/software/nanopolish/Singularity.nanopolish_0.14.0 -> build/lib/damona/software/nanopolish 2023-07-26T08:18:13,149 creating build/lib/damona/software/bioconvert 2023-07-26T08:18:13,151 copying damona/software/bioconvert/Singularity.bioconvert_1.0.0 -> build/lib/damona/software/bioconvert 2023-07-26T08:18:13,156 copying damona/software/bioconvert/Singularity.bioconvert_1.1.0 -> build/lib/damona/software/bioconvert 2023-07-26T08:18:13,160 copying damona/software/bioconvert/Singularity.bioconvert_0.6.3 -> build/lib/damona/software/bioconvert 2023-07-26T08:18:13,164 copying damona/software/bioconvert/Singularity.bioconvert_0.6.2 -> build/lib/damona/software/bioconvert 2023-07-26T08:18:13,168 copying damona/software/bioconvert/Singularity.bioconvert_0.6.1 -> build/lib/damona/software/bioconvert 2023-07-26T08:18:13,172 creating build/lib/damona/software/pangolin 2023-07-26T08:18:13,174 copying damona/software/pangolin/Singularity.pangolin_4.3.0 -> build/lib/damona/software/pangolin 2023-07-26T08:18:13,178 creating build/lib/damona/software/mafft 2023-07-26T08:18:13,180 copying damona/software/mafft/Singularity.mafft_7.520.0 -> build/lib/damona/software/mafft 2023-07-26T08:18:13,184 creating build/lib/damona/software/kraken 2023-07-26T08:18:13,186 copying damona/software/kraken/Singularity.kraken_1.1.0 -> build/lib/damona/software/kraken 2023-07-26T08:18:13,190 copying damona/software/kraken/Singularity.kraken_2.0.9 -> build/lib/damona/software/kraken 2023-07-26T08:18:13,194 creating build/lib/damona/software/RIPseeker 2023-07-26T08:18:13,196 copying damona/software/RIPseeker/Singularity.RIPseeker_1.0.0 -> build/lib/damona/software/RIPseeker 2023-07-26T08:18:13,200 creating build/lib/damona/software/bowtie2 2023-07-26T08:18:13,202 copying damona/software/bowtie2/Singularity.bowtie2_2.3.4 -> build/lib/damona/software/bowtie2 2023-07-26T08:18:13,207 copying damona/software/bowtie2/Singularity.bowtie2_2.4.2 -> build/lib/damona/software/bowtie2 2023-07-26T08:18:13,212 copying damona/software/bowtie2/Singularity.bowtie2_2.5.1 -> build/lib/damona/software/bowtie2 2023-07-26T08:18:13,216 creating build/lib/damona/software/raxml 2023-07-26T08:18:13,218 copying damona/software/raxml/Singularity.raxml_8.2.12 -> build/lib/damona/software/raxml 2023-07-26T08:18:13,222 creating build/lib/damona/software/polypolish 2023-07-26T08:18:13,224 copying damona/software/polypolish/Singularity.polypolish_0.5.0 -> build/lib/damona/software/polypolish 2023-07-26T08:18:13,228 creating build/lib/damona/software/quast 2023-07-26T08:18:13,230 copying damona/software/quast/Singularity.quast_5.2.0 -> build/lib/damona/software/quast 2023-07-26T08:18:13,234 copying damona/software/quast/Singularity.quast_5.0.2 -> build/lib/damona/software/quast 2023-07-26T08:18:13,238 creating build/lib/damona/software/rnadiff 2023-07-26T08:18:13,240 copying damona/software/rnadiff/Singularity.rnadiff_1.7.1 -> build/lib/damona/software/rnadiff 2023-07-26T08:18:13,244 creating build/lib/damona/software/subread 2023-07-26T08:18:13,246 copying damona/software/subread/Singularity.subread_2.0.3 -> build/lib/damona/software/subread 2023-07-26T08:18:13,250 creating build/lib/damona/software/trinity 2023-07-26T08:18:13,252 copying damona/software/trinity/Singularity.trinity_2.15.1 -> build/lib/damona/software/trinity 2023-07-26T08:18:13,257 creating build/lib/damona/software/vt 2023-07-26T08:18:13,258 copying damona/software/vt/Singularity.vt_0.57721.0 -> build/lib/damona/software/vt 2023-07-26T08:18:13,263 creating build/lib/damona/software/medaka 2023-07-26T08:18:13,264 copying damona/software/medaka/Singularity.medaka_1.7.3 -> build/lib/damona/software/medaka 2023-07-26T08:18:13,269 creating build/lib/damona/software/falco 2023-07-26T08:18:13,271 copying damona/software/falco/Singularity.falco_1.0.0 -> build/lib/damona/software/falco 2023-07-26T08:18:13,275 copying damona/software/falco/Singularity.falco_0.2.1 -> build/lib/damona/software/falco 2023-07-26T08:18:13,279 creating build/lib/damona/software/dorado 2023-07-26T08:18:13,281 copying damona/software/dorado/Singularity.dorado_0.3.1 -> build/lib/damona/software/dorado 2023-07-26T08:18:13,285 copying damona/software/dorado/Singularity.dorado_0.3.2 -> build/lib/damona/software/dorado 2023-07-26T08:18:13,290 creating build/lib/damona/software/sequana_ribofinder 2023-07-26T08:18:13,291 copying damona/software/sequana_ribofinder/Singularity.sequana_ribofinder_0.12.0 -> build/lib/damona/software/sequana_ribofinder 2023-07-26T08:18:13,296 creating build/lib/damona/software/hmmer 2023-07-26T08:18:13,297 copying damona/software/hmmer/Singularity.hmmer_3.3.2 -> build/lib/damona/software/hmmer 2023-07-26T08:18:13,302 creating build/lib/damona/software/fastqc 2023-07-26T08:18:13,304 copying damona/software/fastqc/Singularity.fastqc_0.11.9_py3 -> build/lib/damona/software/fastqc 2023-07-26T08:18:13,308 copying damona/software/fastqc/Singularity.fastqc_0.12.1 -> build/lib/damona/software/fastqc 2023-07-26T08:18:13,312 copying damona/software/fastqc/Singularity.fastqc_0.11.9 -> build/lib/damona/software/fastqc 2023-07-26T08:18:13,317 copying damona/software/fastqc/Singularity.fastqc_0.11.8 -> build/lib/damona/software/fastqc 2023-07-26T08:18:13,321 creating build/lib/damona/software/ivar 2023-07-26T08:18:13,323 copying damona/software/ivar/Singularity.ivar_1.3.1 -> build/lib/damona/software/ivar 2023-07-26T08:18:13,327 creating build/lib/damona/software/graphviz 2023-07-26T08:18:13,329 copying damona/software/graphviz/Singularity.graphviz_7.0.5 -> build/lib/damona/software/graphviz 2023-07-26T08:18:13,333 copying damona/software/graphviz/Singularity.graphviz_2.43.0 -> build/lib/damona/software/graphviz 2023-07-26T08:18:13,338 creating build/lib/damona/software/igvtools 2023-07-26T08:18:13,340 copying damona/software/igvtools/Singularity.igvtools_2.12.0 -> build/lib/damona/software/igvtools 2023-07-26T08:18:13,344 creating build/lib/damona/software/seqkit 2023-07-26T08:18:13,346 copying damona/software/seqkit/Singularity.seqkit_2.4.0 -> build/lib/damona/software/seqkit 2023-07-26T08:18:13,350 copying damona/software/seqkit/Singularity.seqkit_2.1.0 -> build/lib/damona/software/seqkit 2023-07-26T08:18:13,354 creating build/lib/damona/software/canu 2023-07-26T08:18:13,357 copying damona/software/canu/Singularity.canu_1.8.0 -> build/lib/damona/software/canu 2023-07-26T08:18:13,362 copying damona/software/canu/Singularity.canu_2.1.1 -> build/lib/damona/software/canu 2023-07-26T08:18:13,366 copying damona/software/canu/Singularity.canu_1.6.0 -> build/lib/damona/software/canu 2023-07-26T08:18:13,370 creating build/lib/damona/software/pbbam 2023-07-26T08:18:13,372 copying damona/software/pbbam/Singularity.pbbam_2.1.0 -> build/lib/damona/software/pbbam 2023-07-26T08:18:13,376 copying damona/software/pbbam/Singularity.pbbam_2.3.0 -> build/lib/damona/software/pbbam 2023-07-26T08:18:13,380 creating build/lib/damona/software/phantompeakqualtools 2023-07-26T08:18:13,382 copying damona/software/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/lib/damona/software/phantompeakqualtools 2023-07-26T08:18:13,387 creating build/lib/damona/software/trinotate 2023-07-26T08:18:13,388 copying damona/software/trinotate/Singularity.trinotate_4.0.1 -> build/lib/damona/software/trinotate 2023-07-26T08:18:13,393 creating build/lib/damona/software/ccs 2023-07-26T08:18:13,394 copying damona/software/ccs/Singularity.ccs_6.4.0 -> build/lib/damona/software/ccs 2023-07-26T08:18:13,399 creating build/lib/damona/software/minimap2 2023-07-26T08:18:13,400 copying damona/software/minimap2/Singularity.minimap2_2.17.0 -> build/lib/damona/software/minimap2 2023-07-26T08:18:13,405 copying damona/software/minimap2/Singularity.minimap2_2.24.0 -> build/lib/damona/software/minimap2 2023-07-26T08:18:13,409 copying damona/software/minimap2/Singularity.minimap2_2.23.0 -> build/lib/damona/software/minimap2 2023-07-26T08:18:13,413 creating build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,415 copying damona/software/sequana_tools/Singularity.sequana_tools_0.10.0 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,420 copying damona/software/sequana_tools/Singularity.sequana_tools_0.14.3 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,424 copying damona/software/sequana_tools/Singularity.sequana_tools_0.15.1 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,428 copying damona/software/sequana_tools/Singularity.sequana_tools_0.14.5 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,432 copying damona/software/sequana_tools/Singularity.sequana_tools_0.14.2 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,436 copying damona/software/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,440 copying damona/software/sequana_tools/Singularity.sequana_tools_0.12.0 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,444 copying damona/software/sequana_tools/Singularity.sequana_tools_0.14.1 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,449 copying damona/software/sequana_tools/Singularity.sequana_tools_23.6.13 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,453 copying damona/software/sequana_tools/Singularity.sequana_tools_0.11.0 -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,457 creating build/lib/damona/software/homer 2023-07-26T08:18:13,459 copying damona/software/homer/Singularity.homer_4.11.0 -> build/lib/damona/software/homer 2023-07-26T08:18:13,463 creating build/lib/damona/software/sratoolkit 2023-07-26T08:18:13,465 copying damona/software/sratoolkit/Singularity.sratoolkit_3.0.6 -> build/lib/damona/software/sratoolkit 2023-07-26T08:18:13,469 creating build/lib/damona/software/rtools 2023-07-26T08:18:13,471 copying damona/software/rtools/Singularity.rtools_1.0.0 -> build/lib/damona/software/rtools 2023-07-26T08:18:13,475 copying damona/software/rtools/Singularity.rtools_1.1.0 -> build/lib/damona/software/rtools 2023-07-26T08:18:13,479 copying damona/software/rtools/Singularity.rtools_1.2.0 -> build/lib/damona/software/rtools 2023-07-26T08:18:13,483 creating build/lib/damona/software/hifiasm 2023-07-26T08:18:13,485 copying damona/software/hifiasm/Singularity.hifiasm_0.19.1 -> build/lib/damona/software/hifiasm 2023-07-26T08:18:13,489 creating build/lib/damona/software/gzip 2023-07-26T08:18:13,491 copying damona/software/gzip/Singularity.gzip_1.9.0 -> build/lib/damona/software/gzip 2023-07-26T08:18:13,495 creating build/lib/damona/software/transdecoder 2023-07-26T08:18:13,497 copying damona/software/transdecoder/Singularity.trandecoder_5.7.0 -> build/lib/damona/software/transdecoder 2023-07-26T08:18:13,501 creating build/lib/damona/software/sequana 2023-07-26T08:18:13,503 copying damona/software/sequana/Singularity.sequana_0.12.6 -> build/lib/damona/software/sequana 2023-07-26T08:18:13,507 copying damona/software/sequana/Singularity.sequana_0.15.0 -> build/lib/damona/software/sequana 2023-07-26T08:18:13,511 copying damona/software/sequana/Singularity.sequana_0.14.6 -> build/lib/damona/software/sequana 2023-07-26T08:18:13,516 creating build/lib/damona/software/pigz 2023-07-26T08:18:13,517 copying damona/software/pigz/Singularity.pigz_2.4.0 -> build/lib/damona/software/pigz 2023-07-26T08:18:13,522 creating build/lib/damona/software/bbtools 2023-07-26T08:18:13,523 copying damona/software/bbtools/Singularity.bbtools_38.94.0 -> build/lib/damona/software/bbtools 2023-07-26T08:18:13,528 creating build/lib/damona/software/samtools 2023-07-26T08:18:13,530 copying damona/software/samtools/Singularity.samtools_1.15.0 -> build/lib/damona/software/samtools 2023-07-26T08:18:13,534 copying damona/software/samtools/Singularity.samtools_1.16.1 -> build/lib/damona/software/samtools 2023-07-26T08:18:13,538 creating build/lib/damona/software/pycoqc 2023-07-26T08:18:13,540 copying damona/software/pycoqc/Singularity.pycoqc_2.5.2 -> build/lib/damona/software/pycoqc 2023-07-26T08:18:13,544 creating build/lib/damona/software/cellranger 2023-07-26T08:18:13,546 copying damona/software/cellranger/Singularity.cellranger_7.1.0 -> build/lib/damona/software/cellranger 2023-07-26T08:18:13,550 creating build/lib/damona/software/picard 2023-07-26T08:18:13,552 copying damona/software/picard/Singularity.picard_2.26 -> build/lib/damona/software/picard 2023-07-26T08:18:13,556 creating build/lib/damona/software/flye 2023-07-26T08:18:13,558 copying damona/software/flye/Singularity.flye_2.9.0 -> build/lib/damona/software/flye 2023-07-26T08:18:13,563 copying damona/software/flye/Singularity.flye_2.9.1 -> build/lib/damona/software/flye 2023-07-26T08:18:13,568 creating build/lib/damona/software/bamtools 2023-07-26T08:18:13,569 copying damona/software/bamtools/Singularity.bamtools_2.5.2 -> build/lib/damona/software/bamtools 2023-07-26T08:18:13,574 creating build/lib/damona/software/snpeff 2023-07-26T08:18:13,575 copying damona/software/snpeff/Singularity.snpeff_5.1.0 -> build/lib/damona/software/snpeff 2023-07-26T08:18:13,580 copying damona/software/snpeff/Singularity.snpeff_5.0.0 -> build/lib/damona/software/snpeff 2023-07-26T08:18:13,584 creating build/lib/damona/software/prokka 2023-07-26T08:18:13,586 copying damona/software/prokka/Singularity.prokka_1.14.6 -> build/lib/damona/software/prokka 2023-07-26T08:18:13,590 copying damona/software/prokka/Singularity.prokka_1.14.5 -> build/lib/damona/software/prokka 2023-07-26T08:18:13,594 creating build/lib/damona/software/fastp 2023-07-26T08:18:13,596 copying damona/software/fastp/Singularity.fastp_0.23.2 -> build/lib/damona/software/fastp 2023-07-26T08:18:13,600 copying damona/software/fastp/Singularity.fastp_0.23.3 -> build/lib/damona/software/fastp 2023-07-26T08:18:13,604 creating build/lib/damona/software/ucsc 2023-07-26T08:18:13,606 copying damona/software/ucsc/Singularity.ucsc_3.7.7 -> build/lib/damona/software/ucsc 2023-07-26T08:18:13,611 creating build/lib/damona/software/shustring 2023-07-26T08:18:13,612 copying damona/software/shustring/Singularity.shustring_2.6.0 -> build/lib/damona/software/shustring 2023-07-26T08:18:13,617 creating build/lib/damona/software/mergegi 2023-07-26T08:18:13,619 copying damona/software/mergegi/Singularity.mergegi_0.0.1 -> build/lib/damona/software/mergegi 2023-07-26T08:18:13,623 creating build/lib/damona/software/bedtools 2023-07-26T08:18:13,625 copying damona/software/bedtools/Singularity.bedtools_2.30.0 -> build/lib/damona/software/bedtools 2023-07-26T08:18:13,630 creating build/lib/damona/software/busco 2023-07-26T08:18:13,632 copying damona/software/busco/Singularity.busco_5.4.6 -> build/lib/damona/software/busco 2023-07-26T08:18:13,637 creating build/lib/damona/software/bowtie 2023-07-26T08:18:13,638 copying damona/software/bowtie/Singularity.bowtie_1.3.1 -> build/lib/damona/software/bowtie 2023-07-26T08:18:13,643 creating build/lib/damona/software/gffread 2023-07-26T08:18:13,645 copying damona/software/gffread/Singularity.gffread_0.12.1 -> build/lib/damona/software/gffread 2023-07-26T08:18:13,649 copying damona/software/gffread/Singularity.gffread_0.12.7 -> build/lib/damona/software/gffread 2023-07-26T08:18:13,653 creating build/lib/damona/software/idr 2023-07-26T08:18:13,655 copying damona/software/idr/Singularity.idr_2.0.3 -> build/lib/damona/software/idr 2023-07-26T08:18:13,660 creating build/lib/damona/software/circlator 2023-07-26T08:18:13,662 copying damona/software/circlator/Singularity.circlator_1.5.5 -> build/lib/damona/software/circlator 2023-07-26T08:18:13,668 creating build/lib/damona/software/sequana_minimal 2023-07-26T08:18:13,670 copying damona/software/sequana_minimal/Singularity.sequana_minimal_23.6.13 -> build/lib/damona/software/sequana_minimal 2023-07-26T08:18:13,675 creating build/lib/damona/software/art 2023-07-26T08:18:13,676 copying damona/software/art/Singularity.art_2.5.8 -> build/lib/damona/software/art 2023-07-26T08:18:13,681 copying damona/software/art/Singularity.art_3.11.14 -> build/lib/damona/software/art 2023-07-26T08:18:13,685 creating build/lib/damona/software/bwa 2023-07-26T08:18:13,687 copying damona/software/bwa/Singularity.bwa_0.7.17 -> build/lib/damona/software/bwa 2023-07-26T08:18:13,691 creating build/lib/damona/software/seqtk 2023-07-26T08:18:13,693 copying damona/software/seqtk/Singularity.seqtk_1.3.0 -> build/lib/damona/software/seqtk 2023-07-26T08:18:13,698 creating build/lib/damona/software/sequana_denovo 2023-07-26T08:18:13,699 copying damona/software/sequana_denovo/Singularity.sequana_denovo_0.0.2 -> build/lib/damona/software/sequana_denovo 2023-07-26T08:18:13,704 creating build/lib/damona/software/salmon 2023-07-26T08:18:13,706 copying damona/software/salmon/Singularity.salmon_1.3.0 -> build/lib/damona/software/salmon 2023-07-26T08:18:13,711 creating build/lib/damona/software/rnaseqc 2023-07-26T08:18:13,713 copying damona/software/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/lib/damona/software/rnaseqc 2023-07-26T08:18:13,718 creating build/lib/damona/software/trf 2023-07-26T08:18:13,720 copying damona/software/trf/Singularity.trf_4.10.0 -> build/lib/damona/software/trf 2023-07-26T08:18:13,724 creating build/lib/damona/software/bcl2fastq 2023-07-26T08:18:13,726 copying damona/software/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/lib/damona/software/bcl2fastq 2023-07-26T08:18:13,730 creating build/lib/damona/software/blast 2023-07-26T08:18:13,732 copying damona/software/blast/Singularity.blast_2.12.0 -> build/lib/damona/software/blast 2023-07-26T08:18:13,737 creating build/lib/damona/software/nextclade 2023-07-26T08:18:13,738 copying damona/software/nextclade/Singularity.nextclade_2.15.0 -> build/lib/damona/software/nextclade 2023-07-26T08:18:13,743 creating build/lib/damona/software/samtools_minimap2 2023-07-26T08:18:13,744 copying damona/software/samtools_minimap2/Singularity.samtools_1.17_minimap2_2.24.0 -> build/lib/damona/software/samtools_minimap2 2023-07-26T08:18:13,749 creating build/lib/damona/software/guppy 2023-07-26T08:18:13,750 copying damona/software/guppy/Singularity.guppy_6.4.2 -> build/lib/damona/software/guppy 2023-07-26T08:18:13,755 copying damona/software/sequana_perl_tools/registry.yaml -> build/lib/damona/software/sequana_perl_tools 2023-07-26T08:18:13,759 copying damona/software/nanopolish/registry.yaml -> build/lib/damona/software/nanopolish 2023-07-26T08:18:13,764 copying damona/software/bioconvert/registry.yaml -> build/lib/damona/software/bioconvert 2023-07-26T08:18:13,768 copying damona/software/pangolin/registry.yaml -> build/lib/damona/software/pangolin 2023-07-26T08:18:13,772 copying damona/software/mafft/registry.yaml -> build/lib/damona/software/mafft 2023-07-26T08:18:13,776 copying damona/software/kraken/registry.yaml -> build/lib/damona/software/kraken 2023-07-26T08:18:13,780 copying damona/software/RIPseeker/registry.yaml -> build/lib/damona/software/RIPseeker 2023-07-26T08:18:13,784 copying damona/software/bowtie2/registry.yaml -> build/lib/damona/software/bowtie2 2023-07-26T08:18:13,788 copying damona/software/raxml/registry.yaml -> build/lib/damona/software/raxml 2023-07-26T08:18:13,793 copying damona/software/polypolish/registry.yaml -> build/lib/damona/software/polypolish 2023-07-26T08:18:13,797 copying damona/software/quast/registry.yaml -> build/lib/damona/software/quast 2023-07-26T08:18:13,801 copying damona/software/rnadiff/registry.yaml -> build/lib/damona/software/rnadiff 2023-07-26T08:18:13,805 copying damona/software/subread/registry.yaml -> build/lib/damona/software/subread 2023-07-26T08:18:13,809 copying damona/software/trinity/registry.yaml -> build/lib/damona/software/trinity 2023-07-26T08:18:13,813 copying damona/software/vt/registry.yaml -> build/lib/damona/software/vt 2023-07-26T08:18:13,817 creating build/lib/damona/software/hisat2 2023-07-26T08:18:13,819 copying damona/software/hisat2/registry.yaml -> build/lib/damona/software/hisat2 2023-07-26T08:18:13,824 copying damona/software/medaka/registry.yaml -> build/lib/damona/software/medaka 2023-07-26T08:18:13,828 copying damona/software/falco/registry.yaml -> build/lib/damona/software/falco 2023-07-26T08:18:13,833 copying damona/software/sequana_ribofinder/registry.yaml -> build/lib/damona/software/sequana_ribofinder 2023-07-26T08:18:13,838 copying damona/software/hmmer/registry.yaml -> build/lib/damona/software/hmmer 2023-07-26T08:18:13,842 copying damona/software/fastqc/registry.yaml -> build/lib/damona/software/fastqc 2023-07-26T08:18:13,846 copying damona/software/ivar/registry.yaml -> build/lib/damona/software/ivar 2023-07-26T08:18:13,850 copying damona/software/graphviz/registry.yaml -> build/lib/damona/software/graphviz 2023-07-26T08:18:13,854 copying damona/software/igvtools/registry.yaml -> build/lib/damona/software/igvtools 2023-07-26T08:18:13,859 copying damona/software/seqkit/registry.yaml -> build/lib/damona/software/seqkit 2023-07-26T08:18:13,863 copying damona/software/canu/registry.yaml -> build/lib/damona/software/canu 2023-07-26T08:18:13,868 copying damona/software/pbbam/registry.yaml -> build/lib/damona/software/pbbam 2023-07-26T08:18:13,873 copying damona/software/phantompeakqualtools/registry.yaml -> build/lib/damona/software/phantompeakqualtools 2023-07-26T08:18:13,878 copying damona/software/trinotate/registry.yaml -> build/lib/damona/software/trinotate 2023-07-26T08:18:13,883 copying damona/software/ccs/registry.yaml -> build/lib/damona/software/ccs 2023-07-26T08:18:13,888 copying damona/software/minimap2/registry.yaml -> build/lib/damona/software/minimap2 2023-07-26T08:18:13,892 copying damona/software/sequana_tools/registry.yaml -> build/lib/damona/software/sequana_tools 2023-07-26T08:18:13,898 copying damona/software/homer/registry.yaml -> build/lib/damona/software/homer 2023-07-26T08:18:13,903 copying damona/software/sratoolkit/registry.yaml -> build/lib/damona/software/sratoolkit 2023-07-26T08:18:13,908 copying damona/software/rtools/registry.yaml -> build/lib/damona/software/rtools 2023-07-26T08:18:13,913 copying damona/software/hifiasm/registry.yaml -> build/lib/damona/software/hifiasm 2023-07-26T08:18:13,918 copying damona/software/gzip/registry.yaml -> build/lib/damona/software/gzip 2023-07-26T08:18:13,923 copying damona/software/transdecoder/registry.yaml -> build/lib/damona/software/transdecoder 2023-07-26T08:18:13,927 copying damona/software/sequana/registry.yaml -> build/lib/damona/software/sequana 2023-07-26T08:18:13,932 copying damona/software/pigz/registry.yaml -> build/lib/damona/software/pigz 2023-07-26T08:18:13,937 copying damona/software/bbtools/registry.yaml -> build/lib/damona/software/bbtools 2023-07-26T08:18:13,942 copying damona/software/samtools/registry.yaml -> build/lib/damona/software/samtools 2023-07-26T08:18:13,947 copying damona/software/pycoqc/registry.yaml -> build/lib/damona/software/pycoqc 2023-07-26T08:18:13,952 copying damona/software/flye/registry.yaml -> build/lib/damona/software/flye 2023-07-26T08:18:13,956 copying damona/software/bamtools/registry.yaml -> build/lib/damona/software/bamtools 2023-07-26T08:18:13,961 copying damona/software/snpeff/registry.yaml -> build/lib/damona/software/snpeff 2023-07-26T08:18:13,966 copying damona/software/prokka/registry.yaml -> build/lib/damona/software/prokka 2023-07-26T08:18:13,971 copying damona/software/fastp/registry.yaml -> build/lib/damona/software/fastp 2023-07-26T08:18:13,976 copying damona/software/ucsc/registry.yaml -> build/lib/damona/software/ucsc 2023-07-26T08:18:13,981 copying damona/software/shustring/registry.yaml -> build/lib/damona/software/shustring 2023-07-26T08:18:13,986 copying damona/software/mergegi/registry.yaml -> build/lib/damona/software/mergegi 2023-07-26T08:18:13,990 copying damona/software/bedtools/registry.yaml -> build/lib/damona/software/bedtools 2023-07-26T08:18:13,995 copying damona/software/busco/registry.yaml -> build/lib/damona/software/busco 2023-07-26T08:18:14,000 copying damona/software/bowtie/registry.yaml -> build/lib/damona/software/bowtie 2023-07-26T08:18:14,004 copying damona/software/gffread/registry.yaml -> build/lib/damona/software/gffread 2023-07-26T08:18:14,008 copying damona/software/idr/registry.yaml -> build/lib/damona/software/idr 2023-07-26T08:18:14,012 copying damona/software/circlator/registry.yaml -> build/lib/damona/software/circlator 2023-07-26T08:18:14,017 copying damona/software/sequana_minimal/registry.yaml -> build/lib/damona/software/sequana_minimal 2023-07-26T08:18:14,021 copying damona/software/art/registry.yaml -> build/lib/damona/software/art 2023-07-26T08:18:14,025 copying damona/software/bwa/registry.yaml -> build/lib/damona/software/bwa 2023-07-26T08:18:14,029 copying damona/software/seqtk/registry.yaml -> build/lib/damona/software/seqtk 2023-07-26T08:18:14,033 copying damona/software/sequana_denovo/registry.yaml -> build/lib/damona/software/sequana_denovo 2023-07-26T08:18:14,038 copying damona/software/salmon/registry.yaml -> build/lib/damona/software/salmon 2023-07-26T08:18:14,042 copying damona/software/rnaseqc/registry.yaml -> build/lib/damona/software/rnaseqc 2023-07-26T08:18:14,046 copying damona/software/trf/registry.yaml -> build/lib/damona/software/trf 2023-07-26T08:18:14,050 copying damona/software/bcl2fastq/registry.yaml -> build/lib/damona/software/bcl2fastq 2023-07-26T08:18:14,054 copying damona/software/blast/registry.yaml -> build/lib/damona/software/blast 2023-07-26T08:18:14,059 copying damona/software/nextclade/registry.yaml -> build/lib/damona/software/nextclade 2023-07-26T08:18:14,063 copying damona/software/samtools_minimap2/registry.yaml -> build/lib/damona/software/samtools_minimap2 2023-07-26T08:18:14,067 copying damona/software/guppy/registry.yaml -> build/lib/damona/software/guppy 2023-07-26T08:18:14,071 copying damona/biocontainers/registry.yaml -> build/lib/damona/biocontainers 2023-07-26T08:18:14,278 /usr/local/lib/python3.7/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-26T08:18:14,278 !! 2023-07-26T08:18:14,279 ******************************************************************************** 2023-07-26T08:18:14,279 Please avoid running ``setup.py`` directly. 2023-07-26T08:18:14,279 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-26T08:18:14,280 other standards-based tools. 2023-07-26T08:18:14,280 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-26T08:18:14,281 ******************************************************************************** 2023-07-26T08:18:14,281 !! 2023-07-26T08:18:14,282 self.initialize_options() 2023-07-26T08:18:14,352 installing to build/bdist.linux-armv7l/wheel 2023-07-26T08:18:14,353 running install 2023-07-26T08:18:14,414 running install_lib 2023-07-26T08:18:14,485 creating build/bdist.linux-armv7l 2023-07-26T08:18:14,487 creating build/bdist.linux-armv7l/wheel 2023-07-26T08:18:14,490 creating build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:14,493 creating build/bdist.linux-armv7l/wheel/damona/shell 2023-07-26T08:18:14,496 copying build/lib/damona/shell/__init__.py -> build/bdist.linux-armv7l/wheel/damona/shell 2023-07-26T08:18:14,500 creating build/bdist.linux-armv7l/wheel/damona/shell/zsh 2023-07-26T08:18:14,502 copying build/lib/damona/shell/zsh/damona.zsh -> build/bdist.linux-armv7l/wheel/damona/shell/zsh 2023-07-26T08:18:14,506 copying build/lib/damona/shell/zsh/__init__.py -> build/bdist.linux-armv7l/wheel/damona/shell/zsh 2023-07-26T08:18:14,511 creating build/bdist.linux-armv7l/wheel/damona/shell/bash 2023-07-26T08:18:14,513 copying build/lib/damona/shell/bash/__init__.py -> build/bdist.linux-armv7l/wheel/damona/shell/bash 2023-07-26T08:18:14,516 copying build/lib/damona/shell/bash/damona.sh -> build/bdist.linux-armv7l/wheel/damona/shell/bash 2023-07-26T08:18:14,522 creating build/bdist.linux-armv7l/wheel/damona/shell/fish 2023-07-26T08:18:14,523 copying build/lib/damona/shell/fish/damona.fish -> build/bdist.linux-armv7l/wheel/damona/shell/fish 2023-07-26T08:18:14,529 creating build/bdist.linux-armv7l/wheel/damona/library 2023-07-26T08:18:14,530 copying build/lib/damona/library/__init__.py -> build/bdist.linux-armv7l/wheel/damona/library 2023-07-26T08:18:14,535 creating build/bdist.linux-armv7l/wheel/damona/library/micromamba 2023-07-26T08:18:14,537 copying build/lib/damona/library/micromamba/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/library/micromamba 2023-07-26T08:18:14,541 copying build/lib/damona/library/micromamba/Singularity.micromamba_1.4.3 -> build/bdist.linux-armv7l/wheel/damona/library/micromamba 2023-07-26T08:18:14,545 copying build/lib/damona/library/micromamba/Singularity.micromamba_1.4.4 -> build/bdist.linux-armv7l/wheel/damona/library/micromamba 2023-07-26T08:18:14,549 creating build/bdist.linux-armv7l/wheel/damona/library/conda 2023-07-26T08:18:14,551 copying build/lib/damona/library/conda/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-07-26T08:18:14,555 copying build/lib/damona/library/conda/Singularity.conda_4.9.3 -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-07-26T08:18:14,559 copying build/lib/damona/library/conda/Singularity.conda_4.9.2 -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-07-26T08:18:14,563 copying build/lib/damona/library/conda/Singularity.conda_4.7.12 -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-07-26T08:18:14,566 copying build/lib/damona/library/conda/Singularity.conda_23.5.0 -> build/bdist.linux-armv7l/wheel/damona/library/conda 2023-07-26T08:18:14,571 creating build/bdist.linux-armv7l/wheel/damona/library/R 2023-07-26T08:18:14,573 copying build/lib/damona/library/R/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/library/R 2023-07-26T08:18:14,577 copying build/lib/damona/library/R/Singularity.R_3.6.3 -> build/bdist.linux-armv7l/wheel/damona/library/R 2023-07-26T08:18:14,580 copying build/lib/damona/library/R/Singularity.R_4.0.2 -> build/bdist.linux-armv7l/wheel/damona/library/R 2023-07-26T08:18:14,585 creating build/bdist.linux-armv7l/wheel/damona/library/ubuntu 2023-07-26T08:18:14,587 copying build/lib/damona/library/ubuntu/Singularity.ubuntu_18.04 -> build/bdist.linux-armv7l/wheel/damona/library/ubuntu 2023-07-26T08:18:14,591 copying build/lib/damona/library/ubuntu/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/library/ubuntu 2023-07-26T08:18:14,594 copying build/lib/damona/library/ubuntu/Singularity.ubuntu_16.04 -> build/bdist.linux-armv7l/wheel/damona/library/ubuntu 2023-07-26T08:18:14,598 copying build/lib/damona/registry.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:14,603 copying build/lib/damona/install.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:14,608 copying build/lib/damona/__init__.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:14,612 copying build/lib/damona/admin.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:14,616 copying build/lib/damona/script.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:14,621 copying build/lib/damona/common.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:14,625 copying build/lib/damona/zenodo.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:14,634 creating build/bdist.linux-armv7l/wheel/damona/software 2023-07-26T08:18:14,637 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-07-26T08:18:14,639 copying build/lib/damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-07-26T08:18:14,642 copying build/lib/damona/software/sequana_perl_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-07-26T08:18:14,646 copying build/lib/damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-07-26T08:18:14,651 copying build/lib/damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.2.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_perl_tools 2023-07-26T08:18:14,656 creating build/bdist.linux-armv7l/wheel/damona/software/nanopolish 2023-07-26T08:18:14,658 copying build/lib/damona/software/nanopolish/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/nanopolish 2023-07-26T08:18:14,662 copying build/lib/damona/software/nanopolish/Singularity.nanopolish_0.14.0 -> build/bdist.linux-armv7l/wheel/damona/software/nanopolish 2023-07-26T08:18:14,668 creating build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-07-26T08:18:14,670 copying build/lib/damona/software/bioconvert/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-07-26T08:18:14,675 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-07-26T08:18:14,679 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_1.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-07-26T08:18:14,683 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_0.6.3 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-07-26T08:18:14,688 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_0.6.2 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-07-26T08:18:14,692 copying build/lib/damona/software/bioconvert/Singularity.bioconvert_0.6.1 -> build/bdist.linux-armv7l/wheel/damona/software/bioconvert 2023-07-26T08:18:14,698 creating build/bdist.linux-armv7l/wheel/damona/software/pangolin 2023-07-26T08:18:14,700 copying build/lib/damona/software/pangolin/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/pangolin 2023-07-26T08:18:14,705 copying build/lib/damona/software/pangolin/Singularity.pangolin_4.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/pangolin 2023-07-26T08:18:14,710 creating build/bdist.linux-armv7l/wheel/damona/software/mafft 2023-07-26T08:18:14,713 copying build/lib/damona/software/mafft/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/mafft 2023-07-26T08:18:14,718 copying build/lib/damona/software/mafft/Singularity.mafft_7.520.0 -> build/bdist.linux-armv7l/wheel/damona/software/mafft 2023-07-26T08:18:14,723 creating build/bdist.linux-armv7l/wheel/damona/software/kraken 2023-07-26T08:18:14,726 copying build/lib/damona/software/kraken/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/kraken 2023-07-26T08:18:14,730 copying build/lib/damona/software/kraken/Singularity.kraken_1.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/kraken 2023-07-26T08:18:14,735 copying build/lib/damona/software/kraken/Singularity.kraken_2.0.9 -> build/bdist.linux-armv7l/wheel/damona/software/kraken 2023-07-26T08:18:14,740 creating build/bdist.linux-armv7l/wheel/damona/software/RIPseeker 2023-07-26T08:18:14,742 copying build/lib/damona/software/RIPseeker/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/RIPseeker 2023-07-26T08:18:14,747 copying build/lib/damona/software/RIPseeker/Singularity.RIPseeker_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/RIPseeker 2023-07-26T08:18:14,753 creating build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-07-26T08:18:14,755 copying build/lib/damona/software/bowtie2/Singularity.bowtie2_2.3.4 -> build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-07-26T08:18:14,760 copying build/lib/damona/software/bowtie2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-07-26T08:18:14,763 copying build/lib/damona/software/bowtie2/Singularity.bowtie2_2.4.2 -> build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-07-26T08:18:14,767 copying build/lib/damona/software/bowtie2/Singularity.bowtie2_2.5.1 -> build/bdist.linux-armv7l/wheel/damona/software/bowtie2 2023-07-26T08:18:14,772 creating build/bdist.linux-armv7l/wheel/damona/software/raxml 2023-07-26T08:18:14,774 copying build/lib/damona/software/raxml/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/raxml 2023-07-26T08:18:14,778 copying build/lib/damona/software/raxml/Singularity.raxml_8.2.12 -> build/bdist.linux-armv7l/wheel/damona/software/raxml 2023-07-26T08:18:14,782 creating build/bdist.linux-armv7l/wheel/damona/software/polypolish 2023-07-26T08:18:14,784 copying build/lib/damona/software/polypolish/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/polypolish 2023-07-26T08:18:14,788 copying build/lib/damona/software/polypolish/Singularity.polypolish_0.5.0 -> build/bdist.linux-armv7l/wheel/damona/software/polypolish 2023-07-26T08:18:14,793 creating build/bdist.linux-armv7l/wheel/damona/software/quast 2023-07-26T08:18:14,794 copying build/lib/damona/software/quast/Singularity.quast_5.2.0 -> build/bdist.linux-armv7l/wheel/damona/software/quast 2023-07-26T08:18:14,798 copying build/lib/damona/software/quast/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/quast 2023-07-26T08:18:14,802 copying build/lib/damona/software/quast/Singularity.quast_5.0.2 -> build/bdist.linux-armv7l/wheel/damona/software/quast 2023-07-26T08:18:14,807 creating build/bdist.linux-armv7l/wheel/damona/software/rnadiff 2023-07-26T08:18:14,808 copying build/lib/damona/software/rnadiff/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/rnadiff 2023-07-26T08:18:14,812 copying build/lib/damona/software/rnadiff/Singularity.rnadiff_1.7.1 -> build/bdist.linux-armv7l/wheel/damona/software/rnadiff 2023-07-26T08:18:14,817 creating build/bdist.linux-armv7l/wheel/damona/software/subread 2023-07-26T08:18:14,819 copying build/lib/damona/software/subread/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/subread 2023-07-26T08:18:14,823 copying build/lib/damona/software/subread/Singularity.subread_2.0.3 -> build/bdist.linux-armv7l/wheel/damona/software/subread 2023-07-26T08:18:14,829 creating build/bdist.linux-armv7l/wheel/damona/software/trinity 2023-07-26T08:18:14,831 copying build/lib/damona/software/trinity/Singularity.trinity_2.15.1 -> build/bdist.linux-armv7l/wheel/damona/software/trinity 2023-07-26T08:18:14,834 copying build/lib/damona/software/trinity/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/trinity 2023-07-26T08:18:14,839 creating build/bdist.linux-armv7l/wheel/damona/software/vt 2023-07-26T08:18:14,841 copying build/lib/damona/software/vt/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/vt 2023-07-26T08:18:14,845 copying build/lib/damona/software/vt/Singularity.vt_0.57721.0 -> build/bdist.linux-armv7l/wheel/damona/software/vt 2023-07-26T08:18:14,850 creating build/bdist.linux-armv7l/wheel/damona/software/hisat2 2023-07-26T08:18:14,852 copying build/lib/damona/software/hisat2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/hisat2 2023-07-26T08:18:14,857 creating build/bdist.linux-armv7l/wheel/damona/software/medaka 2023-07-26T08:18:14,859 copying build/lib/damona/software/medaka/Singularity.medaka_1.7.3 -> build/bdist.linux-armv7l/wheel/damona/software/medaka 2023-07-26T08:18:14,864 copying build/lib/damona/software/medaka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/medaka 2023-07-26T08:18:14,870 creating build/bdist.linux-armv7l/wheel/damona/software/falco 2023-07-26T08:18:14,873 copying build/lib/damona/software/falco/Singularity.falco_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/falco 2023-07-26T08:18:14,877 copying build/lib/damona/software/falco/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/falco 2023-07-26T08:18:14,882 copying build/lib/damona/software/falco/Singularity.falco_0.2.1 -> build/bdist.linux-armv7l/wheel/damona/software/falco 2023-07-26T08:18:14,887 creating build/bdist.linux-armv7l/wheel/damona/software/dorado 2023-07-26T08:18:14,889 copying build/lib/damona/software/dorado/Singularity.dorado_0.3.1 -> build/bdist.linux-armv7l/wheel/damona/software/dorado 2023-07-26T08:18:14,892 copying build/lib/damona/software/dorado/Singularity.dorado_0.3.2 -> build/bdist.linux-armv7l/wheel/damona/software/dorado 2023-07-26T08:18:14,897 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_ribofinder 2023-07-26T08:18:14,899 copying build/lib/damona/software/sequana_ribofinder/Singularity.sequana_ribofinder_0.12.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_ribofinder 2023-07-26T08:18:14,903 copying build/lib/damona/software/sequana_ribofinder/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_ribofinder 2023-07-26T08:18:14,908 creating build/bdist.linux-armv7l/wheel/damona/software/hmmer 2023-07-26T08:18:14,910 copying build/lib/damona/software/hmmer/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/hmmer 2023-07-26T08:18:14,916 copying build/lib/damona/software/hmmer/Singularity.hmmer_3.3.2 -> build/bdist.linux-armv7l/wheel/damona/software/hmmer 2023-07-26T08:18:14,922 creating build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-07-26T08:18:14,924 copying build/lib/damona/software/fastqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-07-26T08:18:14,928 copying build/lib/damona/software/fastqc/Singularity.fastqc_0.11.9_py3 -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-07-26T08:18:14,932 copying build/lib/damona/software/fastqc/Singularity.fastqc_0.12.1 -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-07-26T08:18:14,935 copying build/lib/damona/software/fastqc/Singularity.fastqc_0.11.9 -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-07-26T08:18:14,939 copying build/lib/damona/software/fastqc/Singularity.fastqc_0.11.8 -> build/bdist.linux-armv7l/wheel/damona/software/fastqc 2023-07-26T08:18:14,944 creating build/bdist.linux-armv7l/wheel/damona/software/ivar 2023-07-26T08:18:14,946 copying build/lib/damona/software/ivar/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/ivar 2023-07-26T08:18:14,950 copying build/lib/damona/software/ivar/Singularity.ivar_1.3.1 -> build/bdist.linux-armv7l/wheel/damona/software/ivar 2023-07-26T08:18:14,955 creating build/bdist.linux-armv7l/wheel/damona/software/graphviz 2023-07-26T08:18:14,957 copying build/lib/damona/software/graphviz/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/graphviz 2023-07-26T08:18:14,960 copying build/lib/damona/software/graphviz/Singularity.graphviz_7.0.5 -> build/bdist.linux-armv7l/wheel/damona/software/graphviz 2023-07-26T08:18:14,964 copying build/lib/damona/software/graphviz/Singularity.graphviz_2.43.0 -> build/bdist.linux-armv7l/wheel/damona/software/graphviz 2023-07-26T08:18:14,969 creating build/bdist.linux-armv7l/wheel/damona/software/igvtools 2023-07-26T08:18:14,970 copying build/lib/damona/software/igvtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/igvtools 2023-07-26T08:18:14,974 copying build/lib/damona/software/igvtools/Singularity.igvtools_2.12.0 -> build/bdist.linux-armv7l/wheel/damona/software/igvtools 2023-07-26T08:18:14,979 creating build/bdist.linux-armv7l/wheel/damona/software/seqkit 2023-07-26T08:18:14,981 copying build/lib/damona/software/seqkit/Singularity.seqkit_2.4.0 -> build/bdist.linux-armv7l/wheel/damona/software/seqkit 2023-07-26T08:18:14,985 copying build/lib/damona/software/seqkit/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/seqkit 2023-07-26T08:18:14,988 copying build/lib/damona/software/seqkit/Singularity.seqkit_2.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/seqkit 2023-07-26T08:18:14,993 creating build/bdist.linux-armv7l/wheel/damona/software/canu 2023-07-26T08:18:14,995 copying build/lib/damona/software/canu/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/canu 2023-07-26T08:18:14,999 copying build/lib/damona/software/canu/Singularity.canu_1.8.0 -> build/bdist.linux-armv7l/wheel/damona/software/canu 2023-07-26T08:18:15,003 copying build/lib/damona/software/canu/Singularity.canu_2.1.1 -> build/bdist.linux-armv7l/wheel/damona/software/canu 2023-07-26T08:18:15,007 copying build/lib/damona/software/canu/Singularity.canu_1.6.0 -> build/bdist.linux-armv7l/wheel/damona/software/canu 2023-07-26T08:18:15,012 creating build/bdist.linux-armv7l/wheel/damona/software/pbbam 2023-07-26T08:18:15,013 copying build/lib/damona/software/pbbam/Singularity.pbbam_2.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/pbbam 2023-07-26T08:18:15,017 copying build/lib/damona/software/pbbam/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/pbbam 2023-07-26T08:18:15,021 copying build/lib/damona/software/pbbam/Singularity.pbbam_2.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/pbbam 2023-07-26T08:18:15,026 creating build/bdist.linux-armv7l/wheel/damona/software/phantompeakqualtools 2023-07-26T08:18:15,028 copying build/lib/damona/software/phantompeakqualtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/phantompeakqualtools 2023-07-26T08:18:15,032 copying build/lib/damona/software/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2 -> build/bdist.linux-armv7l/wheel/damona/software/phantompeakqualtools 2023-07-26T08:18:15,037 creating build/bdist.linux-armv7l/wheel/damona/software/trinotate 2023-07-26T08:18:15,038 copying build/lib/damona/software/trinotate/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/trinotate 2023-07-26T08:18:15,042 copying build/lib/damona/software/trinotate/Singularity.trinotate_4.0.1 -> build/bdist.linux-armv7l/wheel/damona/software/trinotate 2023-07-26T08:18:15,048 creating build/bdist.linux-armv7l/wheel/damona/software/ccs 2023-07-26T08:18:15,049 copying build/lib/damona/software/ccs/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/ccs 2023-07-26T08:18:15,053 copying build/lib/damona/software/ccs/Singularity.ccs_6.4.0 -> build/bdist.linux-armv7l/wheel/damona/software/ccs 2023-07-26T08:18:15,058 creating build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-07-26T08:18:15,060 copying build/lib/damona/software/minimap2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-07-26T08:18:15,064 copying build/lib/damona/software/minimap2/Singularity.minimap2_2.17.0 -> build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-07-26T08:18:15,068 copying build/lib/damona/software/minimap2/Singularity.minimap2_2.24.0 -> build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-07-26T08:18:15,072 copying build/lib/damona/software/minimap2/Singularity.minimap2_2.23.0 -> build/bdist.linux-armv7l/wheel/damona/software/minimap2 2023-07-26T08:18:15,078 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,080 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.10.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,085 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.14.3 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,089 copying build/lib/damona/software/sequana_tools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,094 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.15.1 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,098 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.14.5 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,103 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.14.2 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,107 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.9.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,112 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.12.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,116 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.14.1 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,120 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_23.6.13 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,125 copying build/lib/damona/software/sequana_tools/Singularity.sequana_tools_0.11.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_tools 2023-07-26T08:18:15,130 creating build/bdist.linux-armv7l/wheel/damona/software/homer 2023-07-26T08:18:15,133 copying build/lib/damona/software/homer/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/homer 2023-07-26T08:18:15,137 copying build/lib/damona/software/homer/Singularity.homer_4.11.0 -> build/bdist.linux-armv7l/wheel/damona/software/homer 2023-07-26T08:18:15,142 copying build/lib/damona/software/__init__.py -> build/bdist.linux-armv7l/wheel/damona/software 2023-07-26T08:18:15,147 creating build/bdist.linux-armv7l/wheel/damona/software/sratoolkit 2023-07-26T08:18:15,149 copying build/lib/damona/software/sratoolkit/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sratoolkit 2023-07-26T08:18:15,154 copying build/lib/damona/software/sratoolkit/Singularity.sratoolkit_3.0.6 -> build/bdist.linux-armv7l/wheel/damona/software/sratoolkit 2023-07-26T08:18:15,159 creating build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-07-26T08:18:15,162 copying build/lib/damona/software/rtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-07-26T08:18:15,166 copying build/lib/damona/software/rtools/Singularity.rtools_1.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-07-26T08:18:15,171 copying build/lib/damona/software/rtools/Singularity.rtools_1.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-07-26T08:18:15,176 copying build/lib/damona/software/rtools/Singularity.rtools_1.2.0 -> build/bdist.linux-armv7l/wheel/damona/software/rtools 2023-07-26T08:18:15,181 creating build/bdist.linux-armv7l/wheel/damona/software/hifiasm 2023-07-26T08:18:15,184 copying build/lib/damona/software/hifiasm/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/hifiasm 2023-07-26T08:18:15,189 copying build/lib/damona/software/hifiasm/Singularity.hifiasm_0.19.1 -> build/bdist.linux-armv7l/wheel/damona/software/hifiasm 2023-07-26T08:18:15,194 creating build/bdist.linux-armv7l/wheel/damona/software/gzip 2023-07-26T08:18:15,196 copying build/lib/damona/software/gzip/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/gzip 2023-07-26T08:18:15,201 copying build/lib/damona/software/gzip/Singularity.gzip_1.9.0 -> build/bdist.linux-armv7l/wheel/damona/software/gzip 2023-07-26T08:18:15,206 creating build/bdist.linux-armv7l/wheel/damona/software/transdecoder 2023-07-26T08:18:15,208 copying build/lib/damona/software/transdecoder/Singularity.trandecoder_5.7.0 -> build/bdist.linux-armv7l/wheel/damona/software/transdecoder 2023-07-26T08:18:15,213 copying build/lib/damona/software/transdecoder/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/transdecoder 2023-07-26T08:18:15,218 creating build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-07-26T08:18:15,221 copying build/lib/damona/software/sequana/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-07-26T08:18:15,225 copying build/lib/damona/software/sequana/Singularity.sequana_0.12.6 -> build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-07-26T08:18:15,230 copying build/lib/damona/software/sequana/Singularity.sequana_0.15.0 -> build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-07-26T08:18:15,234 copying build/lib/damona/software/sequana/Singularity.sequana_0.14.6 -> build/bdist.linux-armv7l/wheel/damona/software/sequana 2023-07-26T08:18:15,239 creating build/bdist.linux-armv7l/wheel/damona/software/pigz 2023-07-26T08:18:15,242 copying build/lib/damona/software/pigz/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/pigz 2023-07-26T08:18:15,247 copying build/lib/damona/software/pigz/Singularity.pigz_2.4.0 -> build/bdist.linux-armv7l/wheel/damona/software/pigz 2023-07-26T08:18:15,252 creating build/bdist.linux-armv7l/wheel/damona/software/bbtools 2023-07-26T08:18:15,254 copying build/lib/damona/software/bbtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bbtools 2023-07-26T08:18:15,259 copying build/lib/damona/software/bbtools/Singularity.bbtools_38.94.0 -> build/bdist.linux-armv7l/wheel/damona/software/bbtools 2023-07-26T08:18:15,264 creating build/bdist.linux-armv7l/wheel/damona/software/samtools 2023-07-26T08:18:15,267 copying build/lib/damona/software/samtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/samtools 2023-07-26T08:18:15,271 copying build/lib/damona/software/samtools/Singularity.samtools_1.15.0 -> build/bdist.linux-armv7l/wheel/damona/software/samtools 2023-07-26T08:18:15,276 copying build/lib/damona/software/samtools/Singularity.samtools_1.16.1 -> build/bdist.linux-armv7l/wheel/damona/software/samtools 2023-07-26T08:18:15,281 creating build/bdist.linux-armv7l/wheel/damona/software/pycoqc 2023-07-26T08:18:15,283 copying build/lib/damona/software/pycoqc/Singularity.pycoqc_2.5.2 -> build/bdist.linux-armv7l/wheel/damona/software/pycoqc 2023-07-26T08:18:15,288 copying build/lib/damona/software/pycoqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/pycoqc 2023-07-26T08:18:15,294 creating build/bdist.linux-armv7l/wheel/damona/software/cellranger 2023-07-26T08:18:15,296 copying build/lib/damona/software/cellranger/Singularity.cellranger_7.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/cellranger 2023-07-26T08:18:15,302 creating build/bdist.linux-armv7l/wheel/damona/software/picard 2023-07-26T08:18:15,304 copying build/lib/damona/software/picard/Singularity.picard_2.26 -> build/bdist.linux-armv7l/wheel/damona/software/picard 2023-07-26T08:18:15,310 creating build/bdist.linux-armv7l/wheel/damona/software/flye 2023-07-26T08:18:15,312 copying build/lib/damona/software/flye/Singularity.flye_2.9.0 -> build/bdist.linux-armv7l/wheel/damona/software/flye 2023-07-26T08:18:15,317 copying build/lib/damona/software/flye/Singularity.flye_2.9.1 -> build/bdist.linux-armv7l/wheel/damona/software/flye 2023-07-26T08:18:15,321 copying build/lib/damona/software/flye/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/flye 2023-07-26T08:18:15,327 creating build/bdist.linux-armv7l/wheel/damona/software/bamtools 2023-07-26T08:18:15,329 copying build/lib/damona/software/bamtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bamtools 2023-07-26T08:18:15,334 copying build/lib/damona/software/bamtools/Singularity.bamtools_2.5.2 -> build/bdist.linux-armv7l/wheel/damona/software/bamtools 2023-07-26T08:18:15,339 creating build/bdist.linux-armv7l/wheel/damona/software/snpeff 2023-07-26T08:18:15,342 copying build/lib/damona/software/snpeff/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/snpeff 2023-07-26T08:18:15,346 copying build/lib/damona/software/snpeff/Singularity.snpeff_5.1.0 -> build/bdist.linux-armv7l/wheel/damona/software/snpeff 2023-07-26T08:18:15,351 copying build/lib/damona/software/snpeff/Singularity.snpeff_5.0.0 -> build/bdist.linux-armv7l/wheel/damona/software/snpeff 2023-07-26T08:18:15,356 creating build/bdist.linux-armv7l/wheel/damona/software/prokka 2023-07-26T08:18:15,359 copying build/lib/damona/software/prokka/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/prokka 2023-07-26T08:18:15,363 copying build/lib/damona/software/prokka/Singularity.prokka_1.14.6 -> build/bdist.linux-armv7l/wheel/damona/software/prokka 2023-07-26T08:18:15,368 copying build/lib/damona/software/prokka/Singularity.prokka_1.14.5 -> build/bdist.linux-armv7l/wheel/damona/software/prokka 2023-07-26T08:18:15,373 creating build/bdist.linux-armv7l/wheel/damona/software/fastp 2023-07-26T08:18:15,376 copying build/lib/damona/software/fastp/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/fastp 2023-07-26T08:18:15,380 copying build/lib/damona/software/fastp/Singularity.fastp_0.23.2 -> build/bdist.linux-armv7l/wheel/damona/software/fastp 2023-07-26T08:18:15,384 copying build/lib/damona/software/fastp/Singularity.fastp_0.23.3 -> build/bdist.linux-armv7l/wheel/damona/software/fastp 2023-07-26T08:18:15,390 creating build/bdist.linux-armv7l/wheel/damona/software/ucsc 2023-07-26T08:18:15,392 copying build/lib/damona/software/ucsc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/ucsc 2023-07-26T08:18:15,397 copying build/lib/damona/software/ucsc/Singularity.ucsc_3.7.7 -> build/bdist.linux-armv7l/wheel/damona/software/ucsc 2023-07-26T08:18:15,402 creating build/bdist.linux-armv7l/wheel/damona/software/shustring 2023-07-26T08:18:15,404 copying build/lib/damona/software/shustring/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/shustring 2023-07-26T08:18:15,409 copying build/lib/damona/software/shustring/Singularity.shustring_2.6.0 -> build/bdist.linux-armv7l/wheel/damona/software/shustring 2023-07-26T08:18:15,415 creating build/bdist.linux-armv7l/wheel/damona/software/mergegi 2023-07-26T08:18:15,417 copying build/lib/damona/software/mergegi/Singularity.mergegi_0.0.1 -> build/bdist.linux-armv7l/wheel/damona/software/mergegi 2023-07-26T08:18:15,422 copying build/lib/damona/software/mergegi/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/mergegi 2023-07-26T08:18:15,427 creating build/bdist.linux-armv7l/wheel/damona/software/bedtools 2023-07-26T08:18:15,430 copying build/lib/damona/software/bedtools/Singularity.bedtools_2.30.0 -> build/bdist.linux-armv7l/wheel/damona/software/bedtools 2023-07-26T08:18:15,434 copying build/lib/damona/software/bedtools/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bedtools 2023-07-26T08:18:15,440 creating build/bdist.linux-armv7l/wheel/damona/software/busco 2023-07-26T08:18:15,442 copying build/lib/damona/software/busco/Singularity.busco_5.4.6 -> build/bdist.linux-armv7l/wheel/damona/software/busco 2023-07-26T08:18:15,447 copying build/lib/damona/software/busco/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/busco 2023-07-26T08:18:15,452 creating build/bdist.linux-armv7l/wheel/damona/software/bowtie 2023-07-26T08:18:15,455 copying build/lib/damona/software/bowtie/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bowtie 2023-07-26T08:18:15,459 copying build/lib/damona/software/bowtie/Singularity.bowtie_1.3.1 -> build/bdist.linux-armv7l/wheel/damona/software/bowtie 2023-07-26T08:18:15,465 creating build/bdist.linux-armv7l/wheel/damona/software/gffread 2023-07-26T08:18:15,468 copying build/lib/damona/software/gffread/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/gffread 2023-07-26T08:18:15,472 copying build/lib/damona/software/gffread/Singularity.gffread_0.12.1 -> build/bdist.linux-armv7l/wheel/damona/software/gffread 2023-07-26T08:18:15,476 copying build/lib/damona/software/gffread/Singularity.gffread_0.12.7 -> build/bdist.linux-armv7l/wheel/damona/software/gffread 2023-07-26T08:18:15,482 creating build/bdist.linux-armv7l/wheel/damona/software/idr 2023-07-26T08:18:15,484 copying build/lib/damona/software/idr/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/idr 2023-07-26T08:18:15,490 copying build/lib/damona/software/idr/Singularity.idr_2.0.3 -> build/bdist.linux-armv7l/wheel/damona/software/idr 2023-07-26T08:18:15,495 creating build/bdist.linux-armv7l/wheel/damona/software/circlator 2023-07-26T08:18:15,498 copying build/lib/damona/software/circlator/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/circlator 2023-07-26T08:18:15,502 copying build/lib/damona/software/circlator/Singularity.circlator_1.5.5 -> build/bdist.linux-armv7l/wheel/damona/software/circlator 2023-07-26T08:18:15,507 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_minimal 2023-07-26T08:18:15,508 copying build/lib/damona/software/sequana_minimal/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_minimal 2023-07-26T08:18:15,512 copying build/lib/damona/software/sequana_minimal/Singularity.sequana_minimal_23.6.13 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_minimal 2023-07-26T08:18:15,517 creating build/bdist.linux-armv7l/wheel/damona/software/art 2023-07-26T08:18:15,519 copying build/lib/damona/software/art/Singularity.art_2.5.8 -> build/bdist.linux-armv7l/wheel/damona/software/art 2023-07-26T08:18:15,523 copying build/lib/damona/software/art/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/art 2023-07-26T08:18:15,526 copying build/lib/damona/software/art/Singularity.art_3.11.14 -> build/bdist.linux-armv7l/wheel/damona/software/art 2023-07-26T08:18:15,531 creating build/bdist.linux-armv7l/wheel/damona/software/bwa 2023-07-26T08:18:15,532 copying build/lib/damona/software/bwa/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bwa 2023-07-26T08:18:15,536 copying build/lib/damona/software/bwa/Singularity.bwa_0.7.17 -> build/bdist.linux-armv7l/wheel/damona/software/bwa 2023-07-26T08:18:15,541 creating build/bdist.linux-armv7l/wheel/damona/software/seqtk 2023-07-26T08:18:15,543 copying build/lib/damona/software/seqtk/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/seqtk 2023-07-26T08:18:15,547 copying build/lib/damona/software/seqtk/Singularity.seqtk_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/seqtk 2023-07-26T08:18:15,552 creating build/bdist.linux-armv7l/wheel/damona/software/sequana_denovo 2023-07-26T08:18:15,554 copying build/lib/damona/software/sequana_denovo/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/sequana_denovo 2023-07-26T08:18:15,558 copying build/lib/damona/software/sequana_denovo/Singularity.sequana_denovo_0.0.2 -> build/bdist.linux-armv7l/wheel/damona/software/sequana_denovo 2023-07-26T08:18:15,563 creating build/bdist.linux-armv7l/wheel/damona/software/salmon 2023-07-26T08:18:15,565 copying build/lib/damona/software/salmon/Singularity.salmon_1.3.0 -> build/bdist.linux-armv7l/wheel/damona/software/salmon 2023-07-26T08:18:15,569 copying build/lib/damona/software/salmon/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/salmon 2023-07-26T08:18:15,574 creating build/bdist.linux-armv7l/wheel/damona/software/rnaseqc 2023-07-26T08:18:15,575 copying build/lib/damona/software/rnaseqc/Singularity.rnaseqc_2.35.0 -> build/bdist.linux-armv7l/wheel/damona/software/rnaseqc 2023-07-26T08:18:15,579 copying build/lib/damona/software/rnaseqc/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/rnaseqc 2023-07-26T08:18:15,584 creating build/bdist.linux-armv7l/wheel/damona/software/trf 2023-07-26T08:18:15,586 copying build/lib/damona/software/trf/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/trf 2023-07-26T08:18:15,590 copying build/lib/damona/software/trf/Singularity.trf_4.10.0 -> build/bdist.linux-armv7l/wheel/damona/software/trf 2023-07-26T08:18:15,594 creating build/bdist.linux-armv7l/wheel/damona/software/bcl2fastq 2023-07-26T08:18:15,596 copying build/lib/damona/software/bcl2fastq/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/bcl2fastq 2023-07-26T08:18:15,600 copying build/lib/damona/software/bcl2fastq/Singularity.bcl2fastq_2.20.0 -> build/bdist.linux-armv7l/wheel/damona/software/bcl2fastq 2023-07-26T08:18:15,605 creating build/bdist.linux-armv7l/wheel/damona/software/blast 2023-07-26T08:18:15,606 copying build/lib/damona/software/blast/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/blast 2023-07-26T08:18:15,610 copying build/lib/damona/software/blast/Singularity.blast_2.12.0 -> build/bdist.linux-armv7l/wheel/damona/software/blast 2023-07-26T08:18:15,615 creating build/bdist.linux-armv7l/wheel/damona/software/nextclade 2023-07-26T08:18:15,617 copying build/lib/damona/software/nextclade/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/nextclade 2023-07-26T08:18:15,620 copying build/lib/damona/software/nextclade/Singularity.nextclade_2.15.0 -> build/bdist.linux-armv7l/wheel/damona/software/nextclade 2023-07-26T08:18:15,625 creating build/bdist.linux-armv7l/wheel/damona/software/samtools_minimap2 2023-07-26T08:18:15,628 copying build/lib/damona/software/samtools_minimap2/Singularity.samtools_1.17_minimap2_2.24.0 -> build/bdist.linux-armv7l/wheel/damona/software/samtools_minimap2 2023-07-26T08:18:15,632 copying build/lib/damona/software/samtools_minimap2/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/samtools_minimap2 2023-07-26T08:18:15,637 creating build/bdist.linux-armv7l/wheel/damona/software/guppy 2023-07-26T08:18:15,640 copying build/lib/damona/software/guppy/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/software/guppy 2023-07-26T08:18:15,644 copying build/lib/damona/software/guppy/Singularity.guppy_6.4.2 -> build/bdist.linux-armv7l/wheel/damona/software/guppy 2023-07-26T08:18:15,648 copying build/lib/damona/config.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:15,654 copying build/lib/damona/environ.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:15,661 creating build/bdist.linux-armv7l/wheel/damona/papers 2023-07-26T08:18:15,663 copying build/lib/damona/papers/__init__.py -> build/bdist.linux-armv7l/wheel/damona/papers 2023-07-26T08:18:15,667 copying build/lib/damona/builders.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:15,672 copying build/lib/damona/utils.py -> build/bdist.linux-armv7l/wheel/damona 2023-07-26T08:18:15,676 creating build/bdist.linux-armv7l/wheel/damona/biocontainers 2023-07-26T08:18:15,678 copying build/lib/damona/biocontainers/registry.yaml -> build/bdist.linux-armv7l/wheel/damona/biocontainers 2023-07-26T08:18:15,841 copying build/lib/damona/biocontainers/__init__.py -> build/bdist.linux-armv7l/wheel/damona/biocontainers 2023-07-26T08:18:15,843 running install_egg_info 2023-07-26T08:18:15,976 running egg_info 2023-07-26T08:18:16,040 writing damona.egg-info/PKG-INFO 2023-07-26T08:18:16,045 writing dependency_links to damona.egg-info/dependency_links.txt 2023-07-26T08:18:16,049 writing entry points to damona.egg-info/entry_points.txt 2023-07-26T08:18:16,052 writing requirements to damona.egg-info/requires.txt 2023-07-26T08:18:16,054 writing top-level names to damona.egg-info/top_level.txt 2023-07-26T08:18:16,247 reading manifest file 'damona.egg-info/SOURCES.txt' 2023-07-26T08:18:16,271 reading manifest template 'MANIFEST.in' 2023-07-26T08:18:16,275 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-07-26T08:18:16,279 warning: no previously-included files matching '*pyc' found under directory '*' 2023-07-26T08:18:16,282 warning: no previously-included files matching 'test' found under directory '*' 2023-07-26T08:18:16,286 warning: no files found matching '.requirements_dev.txt' 2023-07-26T08:18:16,289 no previously-included directories found matching 'test' 2023-07-26T08:18:16,291 no previously-included directories found matching 'doc' 2023-07-26T08:18:16,292 adding license file 'LICENSE' 2023-07-26T08:18:16,328 writing manifest file 'damona.egg-info/SOURCES.txt' 2023-07-26T08:18:16,332 Copying damona.egg-info to build/bdist.linux-armv7l/wheel/damona-0.10.0-py3.7.egg-info 2023-07-26T08:18:16,360 running install_scripts 2023-07-26T08:18:16,416 creating build/bdist.linux-armv7l/wheel/damona-0.10.0.dist-info/WHEEL 2023-07-26T08:18:16,421 creating '/tmp/pip-wheel-zqzg9tiu/damona-0.10.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-26T08:18:16,426 adding 'damona/__init__.py' 2023-07-26T08:18:16,429 adding 'damona/admin.py' 2023-07-26T08:18:16,433 adding 'damona/builders.py' 2023-07-26T08:18:16,438 adding 'damona/common.py' 2023-07-26T08:18:16,441 adding 'damona/config.py' 2023-07-26T08:18:16,448 adding 'damona/environ.py' 2023-07-26T08:18:16,455 adding 'damona/install.py' 2023-07-26T08:18:16,461 adding 'damona/registry.py' 2023-07-26T08:18:16,470 adding 'damona/script.py' 2023-07-26T08:18:16,473 adding 'damona/utils.py' 2023-07-26T08:18:16,478 adding 'damona/zenodo.py' 2023-07-26T08:18:16,482 adding 'damona/biocontainers/__init__.py' 2023-07-26T08:18:17,080 adding 'damona/biocontainers/registry.yaml' 2023-07-26T08:18:17,160 adding 'damona/library/__init__.py' 2023-07-26T08:18:17,163 adding 'damona/library/R/Singularity.R_3.6.3' 2023-07-26T08:18:17,166 adding 'damona/library/R/Singularity.R_4.0.2' 2023-07-26T08:18:17,168 adding 'damona/library/R/registry.yaml' 2023-07-26T08:18:17,172 adding 'damona/library/conda/Singularity.conda_23.5.0' 2023-07-26T08:18:17,175 adding 'damona/library/conda/Singularity.conda_4.7.12' 2023-07-26T08:18:17,178 adding 'damona/library/conda/Singularity.conda_4.9.2' 2023-07-26T08:18:17,181 adding 'damona/library/conda/Singularity.conda_4.9.3' 2023-07-26T08:18:17,183 adding 'damona/library/conda/registry.yaml' 2023-07-26T08:18:17,187 adding 'damona/library/micromamba/Singularity.micromamba_1.4.3' 2023-07-26T08:18:17,190 adding 'damona/library/micromamba/Singularity.micromamba_1.4.4' 2023-07-26T08:18:17,192 adding 'damona/library/micromamba/registry.yaml' 2023-07-26T08:18:17,196 adding 'damona/library/ubuntu/Singularity.ubuntu_16.04' 2023-07-26T08:18:17,199 adding 'damona/library/ubuntu/Singularity.ubuntu_18.04' 2023-07-26T08:18:17,201 adding 'damona/library/ubuntu/registry.yaml' 2023-07-26T08:18:17,205 adding 'damona/papers/__init__.py' 2023-07-26T08:18:17,208 adding 'damona/shell/__init__.py' 2023-07-26T08:18:17,211 adding 'damona/shell/bash/__init__.py' 2023-07-26T08:18:17,215 adding 'damona/shell/bash/damona.sh' 2023-07-26T08:18:17,220 adding 'damona/shell/fish/damona.fish' 2023-07-26T08:18:17,224 adding 'damona/shell/zsh/__init__.py' 2023-07-26T08:18:17,228 adding 'damona/shell/zsh/damona.zsh' 2023-07-26T08:18:17,234 adding 'damona/software/__init__.py' 2023-07-26T08:18:17,238 adding 'damona/software/RIPseeker/Singularity.RIPseeker_1.0.0' 2023-07-26T08:18:17,240 adding 'damona/software/RIPseeker/registry.yaml' 2023-07-26T08:18:17,244 adding 'damona/software/art/Singularity.art_2.5.8' 2023-07-26T08:18:17,247 adding 'damona/software/art/Singularity.art_3.11.14' 2023-07-26T08:18:17,249 adding 'damona/software/art/registry.yaml' 2023-07-26T08:18:17,253 adding 'damona/software/bamtools/Singularity.bamtools_2.5.2' 2023-07-26T08:18:17,255 adding 'damona/software/bamtools/registry.yaml' 2023-07-26T08:18:17,259 adding 'damona/software/bbtools/Singularity.bbtools_38.94.0' 2023-07-26T08:18:17,262 adding 'damona/software/bbtools/registry.yaml' 2023-07-26T08:18:17,267 adding 'damona/software/bcl2fastq/Singularity.bcl2fastq_2.20.0' 2023-07-26T08:18:17,269 adding 'damona/software/bcl2fastq/registry.yaml' 2023-07-26T08:18:17,274 adding 'damona/software/bedtools/Singularity.bedtools_2.30.0' 2023-07-26T08:18:17,277 adding 'damona/software/bedtools/registry.yaml' 2023-07-26T08:18:17,281 adding 'damona/software/bioconvert/Singularity.bioconvert_0.6.1' 2023-07-26T08:18:17,283 adding 'damona/software/bioconvert/Singularity.bioconvert_0.6.2' 2023-07-26T08:18:17,286 adding 'damona/software/bioconvert/Singularity.bioconvert_0.6.3' 2023-07-26T08:18:17,289 adding 'damona/software/bioconvert/Singularity.bioconvert_1.0.0' 2023-07-26T08:18:17,291 adding 'damona/software/bioconvert/Singularity.bioconvert_1.1.0' 2023-07-26T08:18:17,294 adding 'damona/software/bioconvert/registry.yaml' 2023-07-26T08:18:17,298 adding 'damona/software/blast/Singularity.blast_2.12.0' 2023-07-26T08:18:17,300 adding 'damona/software/blast/registry.yaml' 2023-07-26T08:18:17,303 adding 'damona/software/bowtie/Singularity.bowtie_1.3.1' 2023-07-26T08:18:17,306 adding 'damona/software/bowtie/registry.yaml' 2023-07-26T08:18:17,311 adding 'damona/software/bowtie2/Singularity.bowtie2_2.3.4' 2023-07-26T08:18:17,314 adding 'damona/software/bowtie2/Singularity.bowtie2_2.4.2' 2023-07-26T08:18:17,317 adding 'damona/software/bowtie2/Singularity.bowtie2_2.5.1' 2023-07-26T08:18:17,320 adding 'damona/software/bowtie2/registry.yaml' 2023-07-26T08:18:17,324 adding 'damona/software/busco/Singularity.busco_5.4.6' 2023-07-26T08:18:17,326 adding 'damona/software/busco/registry.yaml' 2023-07-26T08:18:17,330 adding 'damona/software/bwa/Singularity.bwa_0.7.17' 2023-07-26T08:18:17,332 adding 'damona/software/bwa/registry.yaml' 2023-07-26T08:18:17,336 adding 'damona/software/canu/Singularity.canu_1.6.0' 2023-07-26T08:18:17,338 adding 'damona/software/canu/Singularity.canu_1.8.0' 2023-07-26T08:18:17,341 adding 'damona/software/canu/Singularity.canu_2.1.1' 2023-07-26T08:18:17,343 adding 'damona/software/canu/registry.yaml' 2023-07-26T08:18:17,347 adding 'damona/software/ccs/Singularity.ccs_6.4.0' 2023-07-26T08:18:17,349 adding 'damona/software/ccs/registry.yaml' 2023-07-26T08:18:17,353 adding 'damona/software/cellranger/Singularity.cellranger_7.1.0' 2023-07-26T08:18:17,357 adding 'damona/software/circlator/Singularity.circlator_1.5.5' 2023-07-26T08:18:17,359 adding 'damona/software/circlator/registry.yaml' 2023-07-26T08:18:17,363 adding 'damona/software/dorado/Singularity.dorado_0.3.1' 2023-07-26T08:18:17,365 adding 'damona/software/dorado/Singularity.dorado_0.3.2' 2023-07-26T08:18:17,369 adding 'damona/software/falco/Singularity.falco_0.2.1' 2023-07-26T08:18:17,372 adding 'damona/software/falco/Singularity.falco_1.0.0' 2023-07-26T08:18:17,374 adding 'damona/software/falco/registry.yaml' 2023-07-26T08:18:17,377 adding 'damona/software/fastp/Singularity.fastp_0.23.2' 2023-07-26T08:18:17,380 adding 'damona/software/fastp/Singularity.fastp_0.23.3' 2023-07-26T08:18:17,382 adding 'damona/software/fastp/registry.yaml' 2023-07-26T08:18:17,386 adding 'damona/software/fastqc/Singularity.fastqc_0.11.8' 2023-07-26T08:18:17,388 adding 'damona/software/fastqc/Singularity.fastqc_0.11.9' 2023-07-26T08:18:17,391 adding 'damona/software/fastqc/Singularity.fastqc_0.11.9_py3' 2023-07-26T08:18:17,393 adding 'damona/software/fastqc/Singularity.fastqc_0.12.1' 2023-07-26T08:18:17,396 adding 'damona/software/fastqc/registry.yaml' 2023-07-26T08:18:17,399 adding 'damona/software/flye/Singularity.flye_2.9.0' 2023-07-26T08:18:17,402 adding 'damona/software/flye/Singularity.flye_2.9.1' 2023-07-26T08:18:17,404 adding 'damona/software/flye/registry.yaml' 2023-07-26T08:18:17,408 adding 'damona/software/gffread/Singularity.gffread_0.12.1' 2023-07-26T08:18:17,410 adding 'damona/software/gffread/Singularity.gffread_0.12.7' 2023-07-26T08:18:17,413 adding 'damona/software/gffread/registry.yaml' 2023-07-26T08:18:17,416 adding 'damona/software/graphviz/Singularity.graphviz_2.43.0' 2023-07-26T08:18:17,419 adding 'damona/software/graphviz/Singularity.graphviz_7.0.5' 2023-07-26T08:18:17,421 adding 'damona/software/graphviz/registry.yaml' 2023-07-26T08:18:17,426 adding 'damona/software/guppy/Singularity.guppy_6.4.2' 2023-07-26T08:18:17,428 adding 'damona/software/guppy/registry.yaml' 2023-07-26T08:18:17,431 adding 'damona/software/gzip/Singularity.gzip_1.9.0' 2023-07-26T08:18:17,434 adding 'damona/software/gzip/registry.yaml' 2023-07-26T08:18:17,437 adding 'damona/software/hifiasm/Singularity.hifiasm_0.19.1' 2023-07-26T08:18:17,440 adding 'damona/software/hifiasm/registry.yaml' 2023-07-26T08:18:17,443 adding 'damona/software/hisat2/registry.yaml' 2023-07-26T08:18:17,446 adding 'damona/software/hmmer/Singularity.hmmer_3.3.2' 2023-07-26T08:18:17,449 adding 'damona/software/hmmer/registry.yaml' 2023-07-26T08:18:17,452 adding 'damona/software/homer/Singularity.homer_4.11.0' 2023-07-26T08:18:17,455 adding 'damona/software/homer/registry.yaml' 2023-07-26T08:18:17,458 adding 'damona/software/idr/Singularity.idr_2.0.3' 2023-07-26T08:18:17,460 adding 'damona/software/idr/registry.yaml' 2023-07-26T08:18:17,464 adding 'damona/software/igvtools/Singularity.igvtools_2.12.0' 2023-07-26T08:18:17,466 adding 'damona/software/igvtools/registry.yaml' 2023-07-26T08:18:17,470 adding 'damona/software/ivar/Singularity.ivar_1.3.1' 2023-07-26T08:18:17,472 adding 'damona/software/ivar/registry.yaml' 2023-07-26T08:18:17,476 adding 'damona/software/kraken/Singularity.kraken_1.1.0' 2023-07-26T08:18:17,478 adding 'damona/software/kraken/Singularity.kraken_2.0.9' 2023-07-26T08:18:17,480 adding 'damona/software/kraken/registry.yaml' 2023-07-26T08:18:17,484 adding 'damona/software/mafft/Singularity.mafft_7.520.0' 2023-07-26T08:18:17,486 adding 'damona/software/mafft/registry.yaml' 2023-07-26T08:18:17,490 adding 'damona/software/medaka/Singularity.medaka_1.7.3' 2023-07-26T08:18:17,492 adding 'damona/software/medaka/registry.yaml' 2023-07-26T08:18:17,496 adding 'damona/software/mergegi/Singularity.mergegi_0.0.1' 2023-07-26T08:18:17,498 adding 'damona/software/mergegi/registry.yaml' 2023-07-26T08:18:17,502 adding 'damona/software/minimap2/Singularity.minimap2_2.17.0' 2023-07-26T08:18:17,504 adding 'damona/software/minimap2/Singularity.minimap2_2.23.0' 2023-07-26T08:18:17,507 adding 'damona/software/minimap2/Singularity.minimap2_2.24.0' 2023-07-26T08:18:17,509 adding 'damona/software/minimap2/registry.yaml' 2023-07-26T08:18:17,512 adding 'damona/software/nanopolish/Singularity.nanopolish_0.14.0' 2023-07-26T08:18:17,515 adding 'damona/software/nanopolish/registry.yaml' 2023-07-26T08:18:17,518 adding 'damona/software/nextclade/Singularity.nextclade_2.15.0' 2023-07-26T08:18:17,521 adding 'damona/software/nextclade/registry.yaml' 2023-07-26T08:18:17,524 adding 'damona/software/pangolin/Singularity.pangolin_4.3.0' 2023-07-26T08:18:17,527 adding 'damona/software/pangolin/registry.yaml' 2023-07-26T08:18:17,530 adding 'damona/software/pbbam/Singularity.pbbam_2.1.0' 2023-07-26T08:18:17,533 adding 'damona/software/pbbam/Singularity.pbbam_2.3.0' 2023-07-26T08:18:17,535 adding 'damona/software/pbbam/registry.yaml' 2023-07-26T08:18:17,539 adding 'damona/software/phantompeakqualtools/Singularity.phantompeakqualtools_1.2.2' 2023-07-26T08:18:17,541 adding 'damona/software/phantompeakqualtools/registry.yaml' 2023-07-26T08:18:17,545 adding 'damona/software/picard/Singularity.picard_2.26' 2023-07-26T08:18:17,548 adding 'damona/software/pigz/Singularity.pigz_2.4.0' 2023-07-26T08:18:17,550 adding 'damona/software/pigz/registry.yaml' 2023-07-26T08:18:17,554 adding 'damona/software/polypolish/Singularity.polypolish_0.5.0' 2023-07-26T08:18:17,556 adding 'damona/software/polypolish/registry.yaml' 2023-07-26T08:18:17,560 adding 'damona/software/prokka/Singularity.prokka_1.14.5' 2023-07-26T08:18:17,562 adding 'damona/software/prokka/Singularity.prokka_1.14.6' 2023-07-26T08:18:17,565 adding 'damona/software/prokka/registry.yaml' 2023-07-26T08:18:17,568 adding 'damona/software/pycoqc/Singularity.pycoqc_2.5.2' 2023-07-26T08:18:17,570 adding 'damona/software/pycoqc/registry.yaml' 2023-07-26T08:18:17,574 adding 'damona/software/quast/Singularity.quast_5.0.2' 2023-07-26T08:18:17,577 adding 'damona/software/quast/Singularity.quast_5.2.0' 2023-07-26T08:18:17,579 adding 'damona/software/quast/registry.yaml' 2023-07-26T08:18:17,583 adding 'damona/software/raxml/Singularity.raxml_8.2.12' 2023-07-26T08:18:17,585 adding 'damona/software/raxml/registry.yaml' 2023-07-26T08:18:17,588 adding 'damona/software/rnadiff/Singularity.rnadiff_1.7.1' 2023-07-26T08:18:17,591 adding 'damona/software/rnadiff/registry.yaml' 2023-07-26T08:18:17,594 adding 'damona/software/rnaseqc/Singularity.rnaseqc_2.35.0' 2023-07-26T08:18:17,597 adding 'damona/software/rnaseqc/registry.yaml' 2023-07-26T08:18:17,600 adding 'damona/software/rtools/Singularity.rtools_1.0.0' 2023-07-26T08:18:17,602 adding 'damona/software/rtools/Singularity.rtools_1.1.0' 2023-07-26T08:18:17,605 adding 'damona/software/rtools/Singularity.rtools_1.2.0' 2023-07-26T08:18:17,608 adding 'damona/software/rtools/registry.yaml' 2023-07-26T08:18:17,611 adding 'damona/software/salmon/Singularity.salmon_1.3.0' 2023-07-26T08:18:17,613 adding 'damona/software/salmon/registry.yaml' 2023-07-26T08:18:17,617 adding 'damona/software/samtools/Singularity.samtools_1.15.0' 2023-07-26T08:18:17,619 adding 'damona/software/samtools/Singularity.samtools_1.16.1' 2023-07-26T08:18:17,622 adding 'damona/software/samtools/registry.yaml' 2023-07-26T08:18:17,625 adding 'damona/software/samtools_minimap2/Singularity.samtools_1.17_minimap2_2.24.0' 2023-07-26T08:18:17,628 adding 'damona/software/samtools_minimap2/registry.yaml' 2023-07-26T08:18:17,631 adding 'damona/software/seqkit/Singularity.seqkit_2.1.0' 2023-07-26T08:18:17,634 adding 'damona/software/seqkit/Singularity.seqkit_2.4.0' 2023-07-26T08:18:17,636 adding 'damona/software/seqkit/registry.yaml' 2023-07-26T08:18:17,640 adding 'damona/software/seqtk/Singularity.seqtk_1.3.0' 2023-07-26T08:18:17,642 adding 'damona/software/seqtk/registry.yaml' 2023-07-26T08:18:17,646 adding 'damona/software/sequana/Singularity.sequana_0.12.6' 2023-07-26T08:18:17,648 adding 'damona/software/sequana/Singularity.sequana_0.14.6' 2023-07-26T08:18:17,651 adding 'damona/software/sequana/Singularity.sequana_0.15.0' 2023-07-26T08:18:17,653 adding 'damona/software/sequana/registry.yaml' 2023-07-26T08:18:17,657 adding 'damona/software/sequana_denovo/Singularity.sequana_denovo_0.0.2' 2023-07-26T08:18:17,660 adding 'damona/software/sequana_denovo/registry.yaml' 2023-07-26T08:18:17,663 adding 'damona/software/sequana_minimal/Singularity.sequana_minimal_23.6.13' 2023-07-26T08:18:17,666 adding 'damona/software/sequana_minimal/registry.yaml' 2023-07-26T08:18:17,670 adding 'damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.1.0' 2023-07-26T08:18:17,672 adding 'damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.2.0' 2023-07-26T08:18:17,676 adding 'damona/software/sequana_perl_tools/Singularity.sequana_perl_tools_0.3.0' 2023-07-26T08:18:17,678 adding 'damona/software/sequana_perl_tools/registry.yaml' 2023-07-26T08:18:17,682 adding 'damona/software/sequana_ribofinder/Singularity.sequana_ribofinder_0.12.0' 2023-07-26T08:18:17,684 adding 'damona/software/sequana_ribofinder/registry.yaml' 2023-07-26T08:18:17,688 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.10.0' 2023-07-26T08:18:17,691 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.11.0' 2023-07-26T08:18:17,694 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.12.0' 2023-07-26T08:18:17,697 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.14.1' 2023-07-26T08:18:17,700 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.14.2' 2023-07-26T08:18:17,702 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.14.3' 2023-07-26T08:18:17,705 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.14.5' 2023-07-26T08:18:17,707 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.15.1' 2023-07-26T08:18:17,710 adding 'damona/software/sequana_tools/Singularity.sequana_tools_0.9.0' 2023-07-26T08:18:17,713 adding 'damona/software/sequana_tools/Singularity.sequana_tools_23.6.13' 2023-07-26T08:18:17,716 adding 'damona/software/sequana_tools/registry.yaml' 2023-07-26T08:18:17,720 adding 'damona/software/shustring/Singularity.shustring_2.6.0' 2023-07-26T08:18:17,722 adding 'damona/software/shustring/registry.yaml' 2023-07-26T08:18:17,726 adding 'damona/software/snpeff/Singularity.snpeff_5.0.0' 2023-07-26T08:18:17,729 adding 'damona/software/snpeff/Singularity.snpeff_5.1.0' 2023-07-26T08:18:17,731 adding 'damona/software/snpeff/registry.yaml' 2023-07-26T08:18:17,735 adding 'damona/software/sratoolkit/Singularity.sratoolkit_3.0.6' 2023-07-26T08:18:17,737 adding 'damona/software/sratoolkit/registry.yaml' 2023-07-26T08:18:17,741 adding 'damona/software/subread/Singularity.subread_2.0.3' 2023-07-26T08:18:17,743 adding 'damona/software/subread/registry.yaml' 2023-07-26T08:18:17,747 adding 'damona/software/transdecoder/Singularity.trandecoder_5.7.0' 2023-07-26T08:18:17,750 adding 'damona/software/transdecoder/registry.yaml' 2023-07-26T08:18:17,753 adding 'damona/software/trf/Singularity.trf_4.10.0' 2023-07-26T08:18:17,756 adding 'damona/software/trf/registry.yaml' 2023-07-26T08:18:17,759 adding 'damona/software/trinity/Singularity.trinity_2.15.1' 2023-07-26T08:18:17,762 adding 'damona/software/trinity/registry.yaml' 2023-07-26T08:18:17,765 adding 'damona/software/trinotate/Singularity.trinotate_4.0.1' 2023-07-26T08:18:17,767 adding 'damona/software/trinotate/registry.yaml' 2023-07-26T08:18:17,771 adding 'damona/software/ucsc/Singularity.ucsc_3.7.7' 2023-07-26T08:18:17,774 adding 'damona/software/ucsc/registry.yaml' 2023-07-26T08:18:17,777 adding 'damona/software/vt/Singularity.vt_0.57721.0' 2023-07-26T08:18:17,780 adding 'damona/software/vt/registry.yaml' 2023-07-26T08:18:17,785 adding 'damona-0.10.0.dist-info/LICENSE' 2023-07-26T08:18:17,792 adding 'damona-0.10.0.dist-info/METADATA' 2023-07-26T08:18:17,794 adding 'damona-0.10.0.dist-info/WHEEL' 2023-07-26T08:18:17,796 adding 'damona-0.10.0.dist-info/entry_points.txt' 2023-07-26T08:18:17,798 adding 'damona-0.10.0.dist-info/top_level.txt' 2023-07-26T08:18:17,807 adding 'damona-0.10.0.dist-info/RECORD' 2023-07-26T08:18:17,838 removing build/bdist.linux-armv7l/wheel 2023-07-26T08:18:18,209 Building wheel for damona (setup.py): finished with status 'done' 2023-07-26T08:18:18,233 Created wheel for damona: filename=damona-0.10.0-py3-none-any.whl size=562005 sha256=9679f57668894fb30cbd731c2662a48f3075015293cebf3598a0e9a55498e3b6 2023-07-26T08:18:18,235 Stored in directory: /tmp/pip-ephem-wheel-cache-0gc_h4ok/wheels/97/6f/8b/f114162a3fca071f9f5256e2e5f77587832724911a2c55abeb 2023-07-26T08:18:18,285 Successfully built damona 2023-07-26T08:18:18,341 Removed build tracker: '/tmp/pip-build-tracker-_hq4310x'