2023-07-28T06:56:12,627 Created temporary directory: /tmp/pip-build-tracker-hvvmp9tx 2023-07-28T06:56:12,628 Initialized build tracking at /tmp/pip-build-tracker-hvvmp9tx 2023-07-28T06:56:12,628 Created build tracker: /tmp/pip-build-tracker-hvvmp9tx 2023-07-28T06:56:12,629 Entered build tracker: /tmp/pip-build-tracker-hvvmp9tx 2023-07-28T06:56:12,629 Created temporary directory: /tmp/pip-wheel-yto847t_ 2023-07-28T06:56:12,632 Created temporary directory: /tmp/pip-ephem-wheel-cache-q4e4_97n 2023-07-28T06:56:12,655 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-28T06:56:12,658 2 location(s) to search for versions of funid: 2023-07-28T06:56:12,658 * https://pypi.org/simple/funid/ 2023-07-28T06:56:12,658 * https://www.piwheels.org/simple/funid/ 2023-07-28T06:56:12,658 Fetching project page and analyzing links: https://pypi.org/simple/funid/ 2023-07-28T06:56:12,659 Getting page https://pypi.org/simple/funid/ 2023-07-28T06:56:12,661 Found index url https://pypi.org/simple/ 2023-07-28T06:56:12,711 Fetched page https://pypi.org/simple/funid/ as application/vnd.pypi.simple.v1+json 2023-07-28T06:56:12,719 Found link https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.0 2023-07-28T06:56:12,719 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/6a/08/2bccf4d17d6297e5c52bcba4eda5d5a1ed634eeb4c048a6a0492bf26f0e2/FunID-0.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,720 Found link https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.2 2023-07-28T06:56:12,720 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/77/47/e4d4394d3df8130a967d730b209ee08f0563e8c07d358e0938084ea2c238/FunID-0.3.2.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,721 Found link https://files.pythonhosted.org/packages/17/c7/bcd0e755fa5647dda4672ae9fd88f94d590c796d5312b2839b1e00beea1b/FunID-0.3.2.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.2.1 2023-07-28T06:56:12,721 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/20/65/dd3f11ff95c939d1894a81682d820f36a991bcf8f100b19982da1b3787ba/FunID-0.3.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,722 Found link https://files.pythonhosted.org/packages/48/62/211e51aabf536101577540574d126849837a43fa07e8c7c79ec79378bf30/FunID-0.3.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.0 2023-07-28T06:56:12,722 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/31/96/b453dc34699170a20a00aa02e9a0eeb511d75494b88bef72641a7f4aabe1/FunID-0.3.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,723 Found link https://files.pythonhosted.org/packages/00/60/4a6fee9144f0fd461c9e04e3f27ac9bbe36c2b7e9b04ddb9159a2e83481d/FunID-0.3.3.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.3.1 2023-07-28T06:56:12,723 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/27/55/5e0509c9b25f2d457da174c47bc4b191e7703d59ce32882ce03496ee35a7/FunID-0.3.4-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,724 Found link https://files.pythonhosted.org/packages/6d/2c/1a624a74aadc70a913197e0a7720007b2f952668ca497fdeeb9737699d8f/FunID-0.3.4.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.4 2023-07-28T06:56:12,724 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/5b/e0/d8b28a15adbb933eea238e2b955d474c3fb6aa73c904d6b372f56f30474c/FunID-0.3.5-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,725 Found link https://files.pythonhosted.org/packages/4e/f7/ff0895811673a7bd1da49a359d093810346659be5ac54140b2fbb5e199fc/FunID-0.3.5.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<=3.11, >3.8), version: 0.3.5 2023-07-28T06:56:12,725 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/b7/27/c64985b174cbfa662e2109d838292a69d1669ad6a3a36294ee03ce81ef2a/FunID-0.3.6.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,726 Found link https://files.pythonhosted.org/packages/7c/19/cc41c29a0bc630bdc8a5ff93bb58cacc1ae756280b353b6b78d39c52bc85/FunID-0.3.6.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.6.1 2023-07-28T06:56:12,726 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/1f/44/739693947517bbc2e128df01ee142d72ee3358f7cc7daba4a3759fbf34bd/FunID-0.3.7-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,727 Found link https://files.pythonhosted.org/packages/a2/14/7ae571dd6e4b918e2a85ca1625481c5764c15f2f4ecebb64e738e4863c57/FunID-0.3.7.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.7 2023-07-28T06:56:12,727 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/89/e3/e48669d0fdeafd9b79bcd3b601ed05547df828c6f5a3cd0d733e28289738/FunID-0.3.8-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,727 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/f4/45/d1bc4761848b0f4ece4dc47311a91a7e85668eb49b3bbc86843e4508dbc1/FunID-0.3.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,728 Found link https://files.pythonhosted.org/packages/42/29/96fc938318a3c5b62670cb0efc021fea7f8257e825f9bc62aad02087bde5/FunID-0.3.8.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.8.1 2023-07-28T06:56:12,728 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/f9/05/5a5739948741051441923681ab8f41aeb24b4b67aee087e3911831cd397a/FunID-0.3.8.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,728 Found link https://files.pythonhosted.org/packages/4a/4a/3bf498c2707726c16177fb6d5e4c1fb6b942aa0f857378f22345cee709b9/FunID-0.3.8.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.8.2 2023-07-28T06:56:12,729 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/51/ac/f8561c5c3715309d959188f62cef662154c247362fa548893dda38582f08/FunID-0.3.9-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,729 Found link https://files.pythonhosted.org/packages/de/4c/ef736f335f2da1f2acbe16932bac1a03e2a46f7fd26e01f7d4a5b30d1a35/FunID-0.3.9.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.9 2023-07-28T06:56:12,730 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/26/59/dd98aa71ec91f80ff255b9177e7c3705f2352298dc8bb48bfa492d8304e3/FunID-0.3.10.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,730 Found link https://files.pythonhosted.org/packages/da/ef/a3b426feaf718c30c259c165124120c3192833b4c356a8a10efa909ac4b7/FunID-0.3.10.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.10.1 2023-07-28T06:56:12,730 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/17/b5/c3439f3af84951ffe85ed70190fdc02a33ab0e435a934a02c08f49505642/FunID-0.3.11-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,731 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/82/95/47d34ff9a0cc4a13e411dda8b40535efd54149fd259ef126246e6fd7ecdb/FunID-0.3.11.0-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,731 Found link https://files.pythonhosted.org/packages/84/c2/3278912b3d3b883be4b40dc072f732f708d5eb844046486762c6f9e7c772/FunID-0.3.11.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.11.0 2023-07-28T06:56:12,732 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/43/8c/a5bf3a512cb66117b0b8a83837a966dc2e3ce2c2bcb8570e5a35d3400392/FunID-0.3.11.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,732 Found link https://files.pythonhosted.org/packages/ba/8a/83e56e593445f58c6b6137886a90beaedabcc59274a95ff56e9d1fd8ecdb/FunID-0.3.11.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.11.1 2023-07-28T06:56:12,732 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/4c/68/28671e34d2c6358178f26a824fd61e89dfea1c3582366a9a5d27cfad6eef/FunID-0.3.12-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,733 Found link https://files.pythonhosted.org/packages/98/5a/615914c19c41ddb727d869f81f69307ee01450ebb57ae2316d7b467cdf28/FunID-0.3.12.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.12 2023-07-28T06:56:12,733 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/bf/6f/97fa36053eecbd72fb635943a6c76131fdc63e6817cb9b88a04e1fa7ac1f/FunID-0.3.12.1-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,734 Found link https://files.pythonhosted.org/packages/91/c1/dfbea8971785c0ab657008484777594dfce4ae2270f925f4d1b1e763108d/FunID-0.3.12.1.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.12.1 2023-07-28T06:56:12,734 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/69/06/2da7c46f79901bdf468d6df8c074b836cbae68bd0ffc8e6d8b187b7ecc6a/FunID-0.3.13-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,735 Found link https://files.pythonhosted.org/packages/26/e1/01fd0479b72362053d60ee74705f3560d2199a552e5abf4856dbec7811dc/FunID-0.3.13.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.13 2023-07-28T06:56:12,735 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/7f/5b/2e2f71bd3e7d3a2665341d6f920716be0874bd90dfe434e3202fbda42435/FunID-0.3.14-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,735 Found link https://files.pythonhosted.org/packages/30/75/e03e8fee328f208b7f1c7a3679943bb9e8ce2cb72f4a54dd1e7214e1100e/FunID-0.3.14.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.14 2023-07-28T06:56:12,736 Fetching project page and analyzing links: https://www.piwheels.org/simple/funid/ 2023-07-28T06:56:12,736 Getting page https://www.piwheels.org/simple/funid/ 2023-07-28T06:56:12,737 Found index url https://www.piwheels.org/simple/ 2023-07-28T06:56:12,923 Fetched page https://www.piwheels.org/simple/funid/ as text/html 2023-07-28T06:56:12,929 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.13-py3-none-any.whl#sha256=f3d7dc788b5d542e2b80267bb14782a3c1e055bb34a1fcda35dd752d9e3fe439 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,930 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.12.1-py3-none-any.whl#sha256=8f79e49afdf8a5b830c592f0a40819950291c7f9812bfc0afc57ec4244e0e14c (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,930 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.12-py3-none-any.whl#sha256=690331574875137d94139ddce24919dd1c94d97492b51b0f26b5d3b88f8c83d7 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,930 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.11.1-py3-none-any.whl#sha256=0b9e179e7311ba0893697757fa065752cf5b0629ba6f3f38e1025e335e74b3a8 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,930 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.11.0-py3-none-any.whl#sha256=6e60d72632ca2cf07c0ec2c903a5e044eef646e76848189b805d20736850ce33 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,931 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.10.1-py3-none-any.whl#sha256=7ac9e1373fc681d838576b55f51c104675d6fc3134a2d545da50145e18d08705 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,931 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.9-py3-none-any.whl#sha256=4431b10bd1c85b826c3ec29a0d6012ea6c189c62b3b9a78ca40cb341e5aba58a (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,931 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.8.2-py3-none-any.whl#sha256=06eb041030a5d98c5317f93863fa0bafdb3bac2e3225487b61109016d3ae8b89 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,931 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.8.1-py3-none-any.whl#sha256=e084fdf424ae421530d153e56c4a7a15849d59762617b101ba672265e1f83ae2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,931 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.7-py3-none-any.whl#sha256=696cfcf7f361ec4e0dd269ac3c0b30051c83fb75dd92ee7b8b0813f1b6c71f6c (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,932 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.6.1-py3-none-any.whl#sha256=9eddeab3cb03eb693bd4e1e231ab1076caa820fd6db88ef6c584b309cf87af4b (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,932 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.5-py3-none-any.whl#sha256=010daca223b2f36ea9811ebd48eb1afa57c9a0ac2f3a3f84f9b86603107db381 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,932 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.4-py3-none-any.whl#sha256=8f1161bfcbdbb5037a33076aa43c07292865101ee07e5370547b462c0e20cb67 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,932 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.1-py3-none-any.whl#sha256=3f87f5ecaa7ed8c6c00a3d76dc520e16293e70f38d878a85136fe28b96dcbbc5 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,932 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.3.0-py3-none-any.whl#sha256=dbca8d35c471b5a3c78fa7f5310bc475466d4bdc67ffff084e63baaf20a81154 (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,933 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2.1-py3-none-any.whl#sha256=273f7078ce3ee94e0c5f6e862a8419c6ea6bd05ea1153174fba3ac5259d65f3a (from https://www.piwheels.org/simple/funid/) (requires-python:<=3.11, >3.8) 2023-07-28T06:56:12,933 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.2-py3-none-any.whl#sha256=d0714cd7cd6b2c16ae6dc7120ae5ede922e049fab52e6d1a2a24c6e7075360be (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,933 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.0-py3-none-any.whl#sha256=e875a0092c43c61afaa8f12b92c67d0ae13e5a081dc0f494828474f50c67bfd2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-07-28T06:56:12,933 Skipping link: not a file: https://www.piwheels.org/simple/funid/ 2023-07-28T06:56:12,934 Skipping link: not a file: https://pypi.org/simple/funid/ 2023-07-28T06:56:12,953 Given no hashes to check 1 links for project 'funid': discarding no candidates 2023-07-28T06:56:12,970 Collecting funid==0.3.14 2023-07-28T06:56:12,972 Created temporary directory: /tmp/pip-unpack-ed84d0iv 2023-07-28T06:56:13,095 Downloading FunID-0.3.14.tar.gz (51.4 MB) 2023-07-28T06:56:24,997 Added funid==0.3.14 from https://files.pythonhosted.org/packages/30/75/e03e8fee328f208b7f1c7a3679943bb9e8ce2cb72f4a54dd1e7214e1100e/FunID-0.3.14.tar.gz to build tracker '/tmp/pip-build-tracker-hvvmp9tx' 2023-07-28T06:56:25,001 Running setup.py (path:/tmp/pip-wheel-yto847t_/funid_58c4af9cfa014b16b935a4e574d0bd54/setup.py) egg_info for package funid 2023-07-28T06:56:25,002 Created temporary directory: /tmp/pip-pip-egg-info-b4oyu6nb 2023-07-28T06:56:25,002 Preparing metadata (setup.py): started 2023-07-28T06:56:25,003 Running command python setup.py egg_info 2023-07-28T06:56:25,650 {'name': 'FunID', 'version': '0.3.14', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.10', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'psutil', 'PyQt5', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'scipy', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-07-28T06:56:25,650 running egg_info 2023-07-28T06:56:25,651 creating /tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info 2023-07-28T06:56:25,680 writing /tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info/PKG-INFO 2023-07-28T06:56:25,682 writing dependency_links to /tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info/dependency_links.txt 2023-07-28T06:56:25,684 writing entry points to /tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info/entry_points.txt 2023-07-28T06:56:25,686 writing requirements to /tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info/requires.txt 2023-07-28T06:56:25,687 writing top-level names to /tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info/top_level.txt 2023-07-28T06:56:25,688 writing manifest file '/tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info/SOURCES.txt' 2023-07-28T06:56:25,782 reading manifest file '/tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info/SOURCES.txt' 2023-07-28T06:56:25,784 adding license file 'LICENSE' 2023-07-28T06:56:25,787 writing manifest file '/tmp/pip-pip-egg-info-b4oyu6nb/FunID.egg-info/SOURCES.txt' 2023-07-28T06:56:25,847 Preparing metadata (setup.py): finished with status 'done' 2023-07-28T06:56:25,852 Source in /tmp/pip-wheel-yto847t_/funid_58c4af9cfa014b16b935a4e574d0bd54 has version 0.3.14, which satisfies requirement funid==0.3.14 from https://files.pythonhosted.org/packages/30/75/e03e8fee328f208b7f1c7a3679943bb9e8ce2cb72f4a54dd1e7214e1100e/FunID-0.3.14.tar.gz 2023-07-28T06:56:25,853 Removed funid==0.3.14 from https://files.pythonhosted.org/packages/30/75/e03e8fee328f208b7f1c7a3679943bb9e8ce2cb72f4a54dd1e7214e1100e/FunID-0.3.14.tar.gz from build tracker '/tmp/pip-build-tracker-hvvmp9tx' 2023-07-28T06:56:25,860 Created temporary directory: /tmp/pip-unpack-9gj_1xh_ 2023-07-28T06:56:25,860 Building wheels for collected packages: funid 2023-07-28T06:56:25,864 Created temporary directory: /tmp/pip-wheel-lzk4h557 2023-07-28T06:56:25,865 Building wheel for funid (setup.py): started 2023-07-28T06:56:25,866 Destination directory: /tmp/pip-wheel-lzk4h557 2023-07-28T06:56:25,866 Running command python setup.py bdist_wheel 2023-07-28T06:56:26,285 {'name': 'FunID', 'version': '0.3.14', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine>=1.0.10', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'psutil', 'PyQt5', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'scipy', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-07-28T06:56:26,518 running bdist_wheel 2023-07-28T06:56:26,810 running build 2023-07-28T06:56:26,810 running build_py 2023-07-28T06:56:26,840 creating build 2023-07-28T06:56:26,841 creating build/lib 2023-07-28T06:56:26,841 creating build/lib/funid 2023-07-28T06:56:26,843 copying funid/FunID_GUI.py -> build/lib/funid 2023-07-28T06:56:26,845 copying funid/main.py -> build/lib/funid 2023-07-28T06:56:26,848 copying funid/__init__.py -> build/lib/funid 2023-07-28T06:56:26,850 creating build/lib/funid/src 2023-07-28T06:56:26,851 copying funid/src/tree_interpretation.py -> build/lib/funid/src 2023-07-28T06:56:26,855 copying funid/src/cluster.py -> build/lib/funid/src 2023-07-28T06:56:26,857 copying funid/src/search.py -> build/lib/funid/src 2023-07-28T06:56:26,859 copying funid/src/logger.py -> build/lib/funid/src 2023-07-28T06:56:26,861 copying funid/src/modeltest.py -> build/lib/funid/src 2023-07-28T06:56:26,864 copying funid/src/hasher.py -> build/lib/funid/src 2023-07-28T06:56:26,865 copying funid/src/save.py -> build/lib/funid/src 2023-07-28T06:56:26,867 copying funid/src/validate_option.py -> build/lib/funid/src 2023-07-28T06:56:26,870 copying funid/src/ncbi.py -> build/lib/funid/src 2023-07-28T06:56:26,873 copying funid/src/logics.py -> build/lib/funid/src 2023-07-28T06:56:26,874 copying funid/src/initialize.py -> build/lib/funid/src 2023-07-28T06:56:26,876 copying funid/src/patch.py -> build/lib/funid/src 2023-07-28T06:56:26,879 copying funid/src/command.py -> build/lib/funid/src 2023-07-28T06:56:26,881 copying funid/src/concatenate.py -> build/lib/funid/src 2023-07-28T06:56:26,884 copying funid/src/tree.py -> build/lib/funid/src 2023-07-28T06:56:26,886 copying funid/src/ext.py -> build/lib/funid/src 2023-07-28T06:56:26,888 copying funid/src/__init__.py -> build/lib/funid/src 2023-07-28T06:56:26,889 copying funid/src/tool.py -> build/lib/funid/src 2023-07-28T06:56:26,892 copying funid/src/tree_interpretation_pipe.py -> build/lib/funid/src 2023-07-28T06:56:26,894 copying funid/src/opt_generator.py -> build/lib/funid/src 2023-07-28T06:56:26,896 copying funid/src/align.py -> build/lib/funid/src 2023-07-28T06:56:26,898 copying funid/src/reporter.py -> build/lib/funid/src 2023-07-28T06:56:26,900 copying funid/src/validation.py -> build/lib/funid/src 2023-07-28T06:56:26,902 copying funid/src/trim.py -> build/lib/funid/src 2023-07-28T06:56:26,904 copying funid/src/manage_input.py -> build/lib/funid/src 2023-07-28T06:56:26,906 copying funid/src/dataset.py -> build/lib/funid/src 2023-07-28T06:56:26,909 creating build/lib/funid/data 2023-07-28T06:56:26,910 copying funid/data/__init__.py -> build/lib/funid/data 2023-07-28T06:56:26,912 running egg_info 2023-07-28T06:56:26,974 writing FunID.egg-info/PKG-INFO 2023-07-28T06:56:26,976 writing dependency_links to FunID.egg-info/dependency_links.txt 2023-07-28T06:56:26,977 writing entry points to FunID.egg-info/entry_points.txt 2023-07-28T06:56:26,979 writing requirements to FunID.egg-info/requires.txt 2023-07-28T06:56:26,980 writing top-level names to FunID.egg-info/top_level.txt 2023-07-28T06:56:27,017 reading manifest file 'FunID.egg-info/SOURCES.txt' 2023-07-28T06:56:27,027 adding license file 'LICENSE' 2023-07-28T06:56:27,034 writing manifest file 'FunID.egg-info/SOURCES.txt' 2023-07-28T06:56:27,037 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external' is absent from the `packages` configuration. 2023-07-28T06:56:27,037 !! 2023-07-28T06:56:27,038 ******************************************************************************** 2023-07-28T06:56:27,038 ############################ 2023-07-28T06:56:27,038 # Package would be ignored # 2023-07-28T06:56:27,038 ############################ 2023-07-28T06:56:27,038 Python recognizes 'funid.external' as an importable package[^1], 2023-07-28T06:56:27,038 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,039 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,039 package, please make sure that 'funid.external' is explicitly added 2023-07-28T06:56:27,039 to the `packages` configuration field. 2023-07-28T06:56:27,039 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,039 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,039 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,040 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,040 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,040 If you don't want 'funid.external' to be distributed and are 2023-07-28T06:56:27,040 already explicitly excluding 'funid.external' via 2023-07-28T06:56:27,040 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,040 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,041 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,041 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,041 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,041 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,042 even if it does not contain any `.py` files. 2023-07-28T06:56:27,042 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,042 directory, all directories are treated like packages. 2023-07-28T06:56:27,042 ******************************************************************************** 2023-07-28T06:56:27,042 !! 2023-07-28T06:56:27,042 check.warn(importable) 2023-07-28T06:56:27,043 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows' is absent from the `packages` configuration. 2023-07-28T06:56:27,043 !! 2023-07-28T06:56:27,043 ******************************************************************************** 2023-07-28T06:56:27,043 ############################ 2023-07-28T06:56:27,043 # Package would be ignored # 2023-07-28T06:56:27,043 ############################ 2023-07-28T06:56:27,043 Python recognizes 'funid.external.BLAST_Windows' as an importable package[^1], 2023-07-28T06:56:27,044 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,044 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,044 package, please make sure that 'funid.external.BLAST_Windows' is explicitly added 2023-07-28T06:56:27,044 to the `packages` configuration field. 2023-07-28T06:56:27,044 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,044 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,045 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,045 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,045 If you don't want 'funid.external.BLAST_Windows' to be distributed and are 2023-07-28T06:56:27,045 already explicitly excluding 'funid.external.BLAST_Windows' via 2023-07-28T06:56:27,045 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,046 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,046 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,046 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,046 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,046 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,047 even if it does not contain any `.py` files. 2023-07-28T06:56:27,047 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,047 directory, all directories are treated like packages. 2023-07-28T06:56:27,047 ******************************************************************************** 2023-07-28T06:56:27,047 !! 2023-07-28T06:56:27,047 check.warn(importable) 2023-07-28T06:56:27,047 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows.bin' is absent from the `packages` configuration. 2023-07-28T06:56:27,047 !! 2023-07-28T06:56:27,048 ******************************************************************************** 2023-07-28T06:56:27,048 ############################ 2023-07-28T06:56:27,048 # Package would be ignored # 2023-07-28T06:56:27,048 ############################ 2023-07-28T06:56:27,048 Python recognizes 'funid.external.BLAST_Windows.bin' as an importable package[^1], 2023-07-28T06:56:27,048 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,049 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,049 package, please make sure that 'funid.external.BLAST_Windows.bin' is explicitly added 2023-07-28T06:56:27,049 to the `packages` configuration field. 2023-07-28T06:56:27,049 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,049 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,049 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,049 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,050 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,050 If you don't want 'funid.external.BLAST_Windows.bin' to be distributed and are 2023-07-28T06:56:27,050 already explicitly excluding 'funid.external.BLAST_Windows.bin' via 2023-07-28T06:56:27,050 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,050 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,050 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,051 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,051 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,051 even if it does not contain any `.py` files. 2023-07-28T06:56:27,051 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,052 directory, all directories are treated like packages. 2023-07-28T06:56:27,052 ******************************************************************************** 2023-07-28T06:56:27,052 !! 2023-07-28T06:56:27,052 check.warn(importable) 2023-07-28T06:56:27,052 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.BLAST_Windows.doc' is absent from the `packages` configuration. 2023-07-28T06:56:27,052 !! 2023-07-28T06:56:27,053 ******************************************************************************** 2023-07-28T06:56:27,053 ############################ 2023-07-28T06:56:27,053 # Package would be ignored # 2023-07-28T06:56:27,053 ############################ 2023-07-28T06:56:27,053 Python recognizes 'funid.external.BLAST_Windows.doc' as an importable package[^1], 2023-07-28T06:56:27,053 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,053 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,053 package, please make sure that 'funid.external.BLAST_Windows.doc' is explicitly added 2023-07-28T06:56:27,054 to the `packages` configuration field. 2023-07-28T06:56:27,054 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,054 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,054 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,054 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,055 If you don't want 'funid.external.BLAST_Windows.doc' to be distributed and are 2023-07-28T06:56:27,055 already explicitly excluding 'funid.external.BLAST_Windows.doc' via 2023-07-28T06:56:27,055 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,055 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,055 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,056 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,056 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,056 even if it does not contain any `.py` files. 2023-07-28T06:56:27,056 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,056 directory, all directories are treated like packages. 2023-07-28T06:56:27,056 ******************************************************************************** 2023-07-28T06:56:27,057 !! 2023-07-28T06:56:27,057 check.warn(importable) 2023-07-28T06:56:27,057 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.FastTree_Windows' is absent from the `packages` configuration. 2023-07-28T06:56:27,057 !! 2023-07-28T06:56:27,057 ******************************************************************************** 2023-07-28T06:56:27,057 ############################ 2023-07-28T06:56:27,057 # Package would be ignored # 2023-07-28T06:56:27,058 ############################ 2023-07-28T06:56:27,058 Python recognizes 'funid.external.FastTree_Windows' as an importable package[^1], 2023-07-28T06:56:27,058 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,058 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,058 package, please make sure that 'funid.external.FastTree_Windows' is explicitly added 2023-07-28T06:56:27,058 to the `packages` configuration field. 2023-07-28T06:56:27,058 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,059 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,059 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,059 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,059 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,059 If you don't want 'funid.external.FastTree_Windows' to be distributed and are 2023-07-28T06:56:27,059 already explicitly excluding 'funid.external.FastTree_Windows' via 2023-07-28T06:56:27,060 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,060 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,060 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,060 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,060 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,061 even if it does not contain any `.py` files. 2023-07-28T06:56:27,061 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,061 directory, all directories are treated like packages. 2023-07-28T06:56:27,061 ******************************************************************************** 2023-07-28T06:56:27,061 !! 2023-07-28T06:56:27,062 check.warn(importable) 2023-07-28T06:56:27,062 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.RAxML_Windows' is absent from the `packages` configuration. 2023-07-28T06:56:27,062 !! 2023-07-28T06:56:27,062 ******************************************************************************** 2023-07-28T06:56:27,062 ############################ 2023-07-28T06:56:27,062 # Package would be ignored # 2023-07-28T06:56:27,062 ############################ 2023-07-28T06:56:27,063 Python recognizes 'funid.external.RAxML_Windows' as an importable package[^1], 2023-07-28T06:56:27,063 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,063 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,063 package, please make sure that 'funid.external.RAxML_Windows' is explicitly added 2023-07-28T06:56:27,063 to the `packages` configuration field. 2023-07-28T06:56:27,064 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,064 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,064 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,064 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,064 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,065 If you don't want 'funid.external.RAxML_Windows' to be distributed and are 2023-07-28T06:56:27,065 already explicitly excluding 'funid.external.RAxML_Windows' via 2023-07-28T06:56:27,065 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,065 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,065 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,065 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,066 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,066 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,066 even if it does not contain any `.py` files. 2023-07-28T06:56:27,066 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,066 directory, all directories are treated like packages. 2023-07-28T06:56:27,067 ******************************************************************************** 2023-07-28T06:56:27,067 !! 2023-07-28T06:56:27,067 check.warn(importable) 2023-07-28T06:56:27,067 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows' is absent from the `packages` configuration. 2023-07-28T06:56:27,067 !! 2023-07-28T06:56:27,067 ******************************************************************************** 2023-07-28T06:56:27,068 ############################ 2023-07-28T06:56:27,068 # Package would be ignored # 2023-07-28T06:56:27,068 ############################ 2023-07-28T06:56:27,068 Python recognizes 'funid.external.mmseqs_Windows' as an importable package[^1], 2023-07-28T06:56:27,068 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,068 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,069 package, please make sure that 'funid.external.mmseqs_Windows' is explicitly added 2023-07-28T06:56:27,069 to the `packages` configuration field. 2023-07-28T06:56:27,069 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,069 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,069 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,070 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,070 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,070 If you don't want 'funid.external.mmseqs_Windows' to be distributed and are 2023-07-28T06:56:27,070 already explicitly excluding 'funid.external.mmseqs_Windows' via 2023-07-28T06:56:27,070 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,070 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,071 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,071 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,071 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,072 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,072 even if it does not contain any `.py` files. 2023-07-28T06:56:27,072 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,072 directory, all directories are treated like packages. 2023-07-28T06:56:27,072 ******************************************************************************** 2023-07-28T06:56:27,072 !! 2023-07-28T06:56:27,072 check.warn(importable) 2023-07-28T06:56:27,073 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.bin' is absent from the `packages` configuration. 2023-07-28T06:56:27,073 !! 2023-07-28T06:56:27,073 ******************************************************************************** 2023-07-28T06:56:27,073 ############################ 2023-07-28T06:56:27,073 # Package would be ignored # 2023-07-28T06:56:27,073 ############################ 2023-07-28T06:56:27,073 Python recognizes 'funid.external.mmseqs_Windows.bin' as an importable package[^1], 2023-07-28T06:56:27,073 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,074 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,074 package, please make sure that 'funid.external.mmseqs_Windows.bin' is explicitly added 2023-07-28T06:56:27,074 to the `packages` configuration field. 2023-07-28T06:56:27,074 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,074 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,074 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,075 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,075 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,075 If you don't want 'funid.external.mmseqs_Windows.bin' to be distributed and are 2023-07-28T06:56:27,075 already explicitly excluding 'funid.external.mmseqs_Windows.bin' via 2023-07-28T06:56:27,075 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,076 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,076 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,076 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,076 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,076 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,077 even if it does not contain any `.py` files. 2023-07-28T06:56:27,077 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,077 directory, all directories are treated like packages. 2023-07-28T06:56:27,077 ******************************************************************************** 2023-07-28T06:56:27,077 !! 2023-07-28T06:56:27,077 check.warn(importable) 2023-07-28T06:56:27,077 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.examples' is absent from the `packages` configuration. 2023-07-28T06:56:27,078 !! 2023-07-28T06:56:27,078 ******************************************************************************** 2023-07-28T06:56:27,078 ############################ 2023-07-28T06:56:27,078 # Package would be ignored # 2023-07-28T06:56:27,078 ############################ 2023-07-28T06:56:27,078 Python recognizes 'funid.external.mmseqs_Windows.examples' as an importable package[^1], 2023-07-28T06:56:27,079 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,079 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,079 package, please make sure that 'funid.external.mmseqs_Windows.examples' is explicitly added 2023-07-28T06:56:27,079 to the `packages` configuration field. 2023-07-28T06:56:27,079 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,079 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,079 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,080 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,080 If you don't want 'funid.external.mmseqs_Windows.examples' to be distributed and are 2023-07-28T06:56:27,080 already explicitly excluding 'funid.external.mmseqs_Windows.examples' via 2023-07-28T06:56:27,080 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,081 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,081 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,081 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,081 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,082 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,082 even if it does not contain any `.py` files. 2023-07-28T06:56:27,082 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,082 directory, all directories are treated like packages. 2023-07-28T06:56:27,082 ******************************************************************************** 2023-07-28T06:56:27,082 !! 2023-07-28T06:56:27,083 check.warn(importable) 2023-07-28T06:56:27,083 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.matrices' is absent from the `packages` configuration. 2023-07-28T06:56:27,083 !! 2023-07-28T06:56:27,083 ******************************************************************************** 2023-07-28T06:56:27,083 ############################ 2023-07-28T06:56:27,083 # Package would be ignored # 2023-07-28T06:56:27,083 ############################ 2023-07-28T06:56:27,084 Python recognizes 'funid.external.mmseqs_Windows.matrices' as an importable package[^1], 2023-07-28T06:56:27,084 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,084 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,084 package, please make sure that 'funid.external.mmseqs_Windows.matrices' is explicitly added 2023-07-28T06:56:27,084 to the `packages` configuration field. 2023-07-28T06:56:27,084 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,085 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,085 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,085 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,085 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,085 If you don't want 'funid.external.mmseqs_Windows.matrices' to be distributed and are 2023-07-28T06:56:27,086 already explicitly excluding 'funid.external.mmseqs_Windows.matrices' via 2023-07-28T06:56:27,086 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,086 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,086 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,086 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,086 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,087 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,087 even if it does not contain any `.py` files. 2023-07-28T06:56:27,087 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,087 directory, all directories are treated like packages. 2023-07-28T06:56:27,087 ******************************************************************************** 2023-07-28T06:56:27,087 !! 2023-07-28T06:56:27,088 check.warn(importable) 2023-07-28T06:56:27,088 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.external.mmseqs_Windows.util' is absent from the `packages` configuration. 2023-07-28T06:56:27,088 !! 2023-07-28T06:56:27,088 ******************************************************************************** 2023-07-28T06:56:27,088 ############################ 2023-07-28T06:56:27,088 # Package would be ignored # 2023-07-28T06:56:27,088 ############################ 2023-07-28T06:56:27,089 Python recognizes 'funid.external.mmseqs_Windows.util' as an importable package[^1], 2023-07-28T06:56:27,089 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,089 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,089 package, please make sure that 'funid.external.mmseqs_Windows.util' is explicitly added 2023-07-28T06:56:27,089 to the `packages` configuration field. 2023-07-28T06:56:27,089 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,090 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,090 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,090 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,090 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,090 If you don't want 'funid.external.mmseqs_Windows.util' to be distributed and are 2023-07-28T06:56:27,090 already explicitly excluding 'funid.external.mmseqs_Windows.util' via 2023-07-28T06:56:27,091 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,091 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,091 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,091 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,091 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,092 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,092 even if it does not contain any `.py` files. 2023-07-28T06:56:27,092 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,092 directory, all directories are treated like packages. 2023-07-28T06:56:27,092 ******************************************************************************** 2023-07-28T06:56:27,092 !! 2023-07-28T06:56:27,093 check.warn(importable) 2023-07-28T06:56:27,093 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium' is absent from the `packages` configuration. 2023-07-28T06:56:27,093 !! 2023-07-28T06:56:27,093 ******************************************************************************** 2023-07-28T06:56:27,093 ############################ 2023-07-28T06:56:27,093 # Package would be ignored # 2023-07-28T06:56:27,093 ############################ 2023-07-28T06:56:27,094 Python recognizes 'funid.test_dataset.penicillium' as an importable package[^1], 2023-07-28T06:56:27,094 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,094 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,094 package, please make sure that 'funid.test_dataset.penicillium' is explicitly added 2023-07-28T06:56:27,094 to the `packages` configuration field. 2023-07-28T06:56:27,094 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,095 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,095 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,095 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,095 If you don't want 'funid.test_dataset.penicillium' to be distributed and are 2023-07-28T06:56:27,095 already explicitly excluding 'funid.test_dataset.penicillium' via 2023-07-28T06:56:27,096 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,096 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,096 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,096 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,097 even if it does not contain any `.py` files. 2023-07-28T06:56:27,097 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,097 directory, all directories are treated like packages. 2023-07-28T06:56:27,097 ******************************************************************************** 2023-07-28T06:56:27,097 !! 2023-07-28T06:56:27,097 check.warn(importable) 2023-07-28T06:56:27,098 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium.DB' is absent from the `packages` configuration. 2023-07-28T06:56:27,098 !! 2023-07-28T06:56:27,098 ******************************************************************************** 2023-07-28T06:56:27,098 ############################ 2023-07-28T06:56:27,098 # Package would be ignored # 2023-07-28T06:56:27,098 ############################ 2023-07-28T06:56:27,098 Python recognizes 'funid.test_dataset.penicillium.DB' as an importable package[^1], 2023-07-28T06:56:27,098 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,099 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,099 package, please make sure that 'funid.test_dataset.penicillium.DB' is explicitly added 2023-07-28T06:56:27,099 to the `packages` configuration field. 2023-07-28T06:56:27,099 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,099 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,099 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,100 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,100 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,100 If you don't want 'funid.test_dataset.penicillium.DB' to be distributed and are 2023-07-28T06:56:27,100 already explicitly excluding 'funid.test_dataset.penicillium.DB' via 2023-07-28T06:56:27,100 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,101 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,101 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,101 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,101 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,102 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,102 even if it does not contain any `.py` files. 2023-07-28T06:56:27,102 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,102 directory, all directories are treated like packages. 2023-07-28T06:56:27,102 ******************************************************************************** 2023-07-28T06:56:27,102 !! 2023-07-28T06:56:27,102 check.warn(importable) 2023-07-28T06:56:27,103 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'funid.test_dataset.penicillium.Query' is absent from the `packages` configuration. 2023-07-28T06:56:27,103 !! 2023-07-28T06:56:27,103 ******************************************************************************** 2023-07-28T06:56:27,103 ############################ 2023-07-28T06:56:27,103 # Package would be ignored # 2023-07-28T06:56:27,103 ############################ 2023-07-28T06:56:27,103 Python recognizes 'funid.test_dataset.penicillium.Query' as an importable package[^1], 2023-07-28T06:56:27,103 but it is absent from setuptools' `packages` configuration. 2023-07-28T06:56:27,104 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-28T06:56:27,104 package, please make sure that 'funid.test_dataset.penicillium.Query' is explicitly added 2023-07-28T06:56:27,104 to the `packages` configuration field. 2023-07-28T06:56:27,104 Alternatively, you can also rely on setuptools' discovery methods 2023-07-28T06:56:27,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-28T06:56:27,104 instead of `find_packages(...)`/`find:`). 2023-07-28T06:56:27,105 You can read more about "package discovery" on setuptools documentation page: 2023-07-28T06:56:27,105 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-28T06:56:27,105 If you don't want 'funid.test_dataset.penicillium.Query' to be distributed and are 2023-07-28T06:56:27,105 already explicitly excluding 'funid.test_dataset.penicillium.Query' via 2023-07-28T06:56:27,105 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-28T06:56:27,105 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-28T06:56:27,106 combination with a more fine grained `package-data` configuration. 2023-07-28T06:56:27,106 You can read more about "package data files" on setuptools documentation page: 2023-07-28T06:56:27,106 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-28T06:56:27,106 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-28T06:56:27,107 even if it does not contain any `.py` files. 2023-07-28T06:56:27,107 On the other hand, currently there is no concept of package data 2023-07-28T06:56:27,107 directory, all directories are treated like packages. 2023-07-28T06:56:27,107 ******************************************************************************** 2023-07-28T06:56:27,107 !! 2023-07-28T06:56:27,107 check.warn(importable) 2023-07-28T06:56:27,107 creating build/lib/funid/external 2023-07-28T06:56:27,107 copying funid/external/MAFFT_LICENSE -> build/lib/funid/external 2023-07-28T06:56:27,108 copying funid/external/MAFFT_Windows.zip -> build/lib/funid/external 2023-07-28T06:56:27,457 copying funid/external/__init__.py -> build/lib/funid/external 2023-07-28T06:56:27,459 creating build/lib/funid/external/BLAST_Windows 2023-07-28T06:56:27,460 copying funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funid/external/BLAST_Windows 2023-07-28T06:56:27,463 creating build/lib/funid/external/BLAST_Windows/bin 2023-07-28T06:56:27,464 copying funid/external/BLAST_Windows/bin/blastn.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-07-28T06:56:27,713 copying funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funid/external/BLAST_Windows/bin 2023-07-28T06:56:27,715 copying funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funid/external/BLAST_Windows/bin 2023-07-28T06:56:27,717 copying funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-07-28T06:56:27,720 copying funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-07-28T06:56:27,893 copying funid/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funid/external/BLAST_Windows/bin 2023-07-28T06:56:27,898 copying funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-07-28T06:56:27,901 creating build/lib/funid/external/BLAST_Windows/doc 2023-07-28T06:56:27,903 copying funid/external/BLAST_Windows/doc/README.txt -> build/lib/funid/external/BLAST_Windows/doc 2023-07-28T06:56:27,905 creating build/lib/funid/external/FastTree_Windows 2023-07-28T06:56:27,906 copying funid/external/FastTree_Windows/FastTree.exe -> build/lib/funid/external/FastTree_Windows 2023-07-28T06:56:27,913 creating build/lib/funid/external/Gblocks_Windows_0.91b 2023-07-28T06:56:27,914 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-28T06:56:27,916 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-28T06:56:27,922 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-28T06:56:27,924 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-28T06:56:27,927 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-28T06:56:27,928 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-28T06:56:27,932 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:27,933 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:27,936 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:27,939 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:27,942 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:27,945 creating build/lib/funid/external/RAxML_Windows 2023-07-28T06:56:27,946 copying funid/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funid/external/RAxML_Windows 2023-07-28T06:56:27,950 copying funid/external/RAxML_Windows/README -> build/lib/funid/external/RAxML_Windows 2023-07-28T06:56:27,953 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-07-28T06:56:27,982 creating build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:27,983 copying funid/external/iqtree-2.1.3-Windows/example.cf -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:28,019 copying funid/external/iqtree-2.1.3-Windows/example.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:28,022 copying funid/external/iqtree-2.1.3-Windows/example.phy -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:28,025 copying funid/external/iqtree-2.1.3-Windows/models.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:28,030 creating build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-28T06:56:28,031 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-28T06:56:28,188 copying funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-07-28T06:56:28,208 creating build/lib/funid/external/mmseqs_Windows 2023-07-28T06:56:28,209 copying funid/external/mmseqs_Windows/LICENSE.md -> build/lib/funid/external/mmseqs_Windows 2023-07-28T06:56:28,212 copying funid/external/mmseqs_Windows/README.md -> build/lib/funid/external/mmseqs_Windows 2023-07-28T06:56:28,215 copying funid/external/mmseqs_Windows/mmseqs.bat -> build/lib/funid/external/mmseqs_Windows 2023-07-28T06:56:28,217 creating build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,218 copying funid/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,232 copying funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,236 copying funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,240 copying funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,245 copying funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,277 copying funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,335 copying funid/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,339 copying funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:28,523 creating build/lib/funid/external/mmseqs_Windows/examples 2023-07-28T06:56:28,524 copying funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funid/external/mmseqs_Windows/examples 2023-07-28T06:56:28,531 creating build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,532 copying funid/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,535 copying funid/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,538 copying funid/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,540 copying funid/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,543 copying funid/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,545 copying funid/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,548 copying funid/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,550 copying funid/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,553 copying funid/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,555 copying funid/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,558 copying funid/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,560 copying funid/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,563 copying funid/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,566 copying funid/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,568 copying funid/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,571 copying funid/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,574 copying funid/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,576 copying funid/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,579 copying funid/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,581 copying funid/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,584 copying funid/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,586 copying funid/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,588 copying funid/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,590 copying funid/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,592 copying funid/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,595 copying funid/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,597 copying funid/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,599 copying funid/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,601 copying funid/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,604 copying funid/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,607 copying funid/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,609 copying funid/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,612 copying funid/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,614 copying funid/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,616 copying funid/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,619 copying funid/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,621 copying funid/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,623 copying funid/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,626 copying funid/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,629 copying funid/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,631 copying funid/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,633 copying funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:28,636 creating build/lib/funid/external/mmseqs_Windows/util 2023-07-28T06:56:28,637 copying funid/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funid/external/mmseqs_Windows/util 2023-07-28T06:56:28,639 creating build/lib/funid/external/trimal.v1.2rev59 2023-07-28T06:56:28,639 creating build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:28,641 copying funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:28,643 copying funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:28,646 copying funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:28,649 copying funid/external/trimal.v1.2rev59/trimAl/README -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:28,651 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-28T06:56:28,652 copying funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-28T06:56:28,667 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,668 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,672 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,675 copying funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,677 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,680 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,682 copying funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,686 copying funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,688 copying funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,691 copying funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,695 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,697 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,700 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,702 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,705 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,708 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,710 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,712 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,714 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,717 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,720 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,722 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,725 copying funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:28,727 copying funid/data/Option_manager.xlsx -> build/lib/funid/data 2023-07-28T06:56:28,730 copying funid/data/genus_line.txt -> build/lib/funid/data 2023-07-28T06:56:28,733 creating build/lib/funid/test_dataset 2023-07-28T06:56:28,734 creating build/lib/funid/test_dataset/penicillium 2023-07-28T06:56:28,735 copying funid/test_dataset/penicillium/Options.config -> build/lib/funid/test_dataset/penicillium 2023-07-28T06:56:28,737 copying funid/test_dataset/penicillium/preset.yaml -> build/lib/funid/test_dataset/penicillium 2023-07-28T06:56:28,740 creating build/lib/funid/test_dataset/penicillium/DB 2023-07-28T06:56:28,740 copying funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funid/test_dataset/penicillium/DB 2023-07-28T06:56:28,748 creating build/lib/funid/test_dataset/penicillium/Query 2023-07-28T06:56:28,749 copying funid/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funid/test_dataset/penicillium/Query 2023-07-28T06:56:28,752 creating build/lib/funid/preset 2023-07-28T06:56:28,753 copying funid/preset/accurate.yaml -> build/lib/funid/preset 2023-07-28T06:56:28,755 copying funid/preset/fast.yaml -> build/lib/funid/preset 2023-07-28T06:56:28,792 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-28T06:56:28,792 !! 2023-07-28T06:56:28,792 ******************************************************************************** 2023-07-28T06:56:28,792 Please avoid running ``setup.py`` directly. 2023-07-28T06:56:28,792 Instead, use pypa/build, pypa/installer, pypa/build or 2023-07-28T06:56:28,793 other standards-based tools. 2023-07-28T06:56:28,793 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-28T06:56:28,793 ******************************************************************************** 2023-07-28T06:56:28,793 !! 2023-07-28T06:56:28,793 self.initialize_options() 2023-07-28T06:56:28,819 installing to build/bdist.linux-armv7l/wheel 2023-07-28T06:56:28,819 running install 2023-07-28T06:56:28,853 running install_lib 2023-07-28T06:56:28,892 creating build/bdist.linux-armv7l 2023-07-28T06:56:28,892 creating build/bdist.linux-armv7l/wheel 2023-07-28T06:56:28,895 creating build/bdist.linux-armv7l/wheel/funid 2023-07-28T06:56:28,897 creating build/bdist.linux-armv7l/wheel/funid/data 2023-07-28T06:56:28,898 copying build/lib/funid/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-28T06:56:28,901 copying build/lib/funid/data/__init__.py -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-28T06:56:28,903 copying build/lib/funid/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funid/data 2023-07-28T06:56:28,906 copying build/lib/funid/FunID_GUI.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-28T06:56:28,910 creating build/bdist.linux-armv7l/wheel/funid/test_dataset 2023-07-28T06:56:28,911 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-28T06:56:28,913 copying build/lib/funid/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-28T06:56:28,916 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-07-28T06:56:28,917 copying build/lib/funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-07-28T06:56:28,931 copying build/lib/funid/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-07-28T06:56:28,933 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-07-28T06:56:28,934 copying build/lib/funid/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-07-28T06:56:28,937 copying build/lib/funid/main.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-28T06:56:28,939 copying build/lib/funid/__init__.py -> build/bdist.linux-armv7l/wheel/funid 2023-07-28T06:56:28,941 creating build/bdist.linux-armv7l/wheel/funid/preset 2023-07-28T06:56:28,942 copying build/lib/funid/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-07-28T06:56:28,944 copying build/lib/funid/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-07-28T06:56:28,946 creating build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,947 copying build/lib/funid/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,950 copying build/lib/funid/src/cluster.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,953 copying build/lib/funid/src/search.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,955 copying build/lib/funid/src/logger.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,957 copying build/lib/funid/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,960 copying build/lib/funid/src/hasher.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,962 copying build/lib/funid/src/save.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,964 copying build/lib/funid/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,967 copying build/lib/funid/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,969 copying build/lib/funid/src/logics.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,971 copying build/lib/funid/src/initialize.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,974 copying build/lib/funid/src/patch.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,976 copying build/lib/funid/src/command.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,978 copying build/lib/funid/src/concatenate.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,980 copying build/lib/funid/src/tree.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,983 copying build/lib/funid/src/ext.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,985 copying build/lib/funid/src/__init__.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,986 copying build/lib/funid/src/tool.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,989 copying build/lib/funid/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,991 copying build/lib/funid/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,993 copying build/lib/funid/src/align.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,995 copying build/lib/funid/src/reporter.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:28,998 copying build/lib/funid/src/validation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:29,000 copying build/lib/funid/src/trim.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:29,001 copying build/lib/funid/src/manage_input.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:29,004 copying build/lib/funid/src/dataset.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-07-28T06:56:29,007 creating build/bdist.linux-armv7l/wheel/funid/external 2023-07-28T06:56:29,008 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:29,009 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:29,011 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.phy -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:29,014 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.cf -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:29,057 copying build/lib/funid/external/iqtree-2.1.3-Windows/models.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-07-28T06:56:29,062 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-28T06:56:29,063 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-28T06:56:29,218 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-07-28T06:56:29,238 creating build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-28T06:56:29,239 copying build/lib/funid/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-28T06:56:29,241 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-28T06:56:29,275 copying build/lib/funid/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-07-28T06:56:29,278 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59 2023-07-28T06:56:29,279 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:29,280 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/README -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:29,283 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,284 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,285 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,287 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,289 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,291 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,293 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,296 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,299 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,301 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,303 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,305 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,308 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,310 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,313 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,315 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,318 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,320 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,323 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,325 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,328 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,330 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,332 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-07-28T06:56:29,335 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:29,337 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:29,339 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-07-28T06:56:29,342 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-28T06:56:29,343 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-07-28T06:56:29,359 copying build/lib/funid/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-28T06:56:29,758 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-28T06:56:29,760 copying build/lib/funid/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-28T06:56:29,762 copying build/lib/funid/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-28T06:56:29,765 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-07-28T06:56:29,766 copying build/lib/funid/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-07-28T06:56:29,769 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-07-28T06:56:29,770 copying build/lib/funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-07-28T06:56:29,778 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,779 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,782 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,784 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,786 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,788 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,790 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,792 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,795 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,797 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,799 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,801 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,803 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,806 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,808 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,810 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,812 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,814 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,816 copying build/lib/funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,818 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,820 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,823 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,825 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,827 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,829 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,831 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,833 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,836 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,838 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,840 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,842 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,845 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,847 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,849 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,851 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,853 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,855 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,857 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,860 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,862 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,864 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,867 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,869 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-07-28T06:56:29,871 copying build/lib/funid/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-07-28T06:56:29,874 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:29,876 copying build/lib/funid/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:29,888 copying build/lib/funid/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:29,892 copying build/lib/funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:29,945 copying build/lib/funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:29,948 copying build/lib/funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:29,952 copying build/lib/funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:29,957 copying build/lib/funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:30,141 copying build/lib/funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-07-28T06:56:30,173 copying build/lib/funid/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-28T06:56:30,176 copying build/lib/funid/external/__init__.py -> build/bdist.linux-armv7l/wheel/funid/external 2023-07-28T06:56:30,178 creating build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-07-28T06:56:30,179 copying build/lib/funid/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-07-28T06:56:30,186 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b 2023-07-28T06:56:30,188 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-28T06:56:30,189 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-28T06:56:30,191 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-28T06:56:30,197 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-28T06:56:30,198 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-07-28T06:56:30,202 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-07-28T06:56:30,204 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:30,206 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:30,208 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:30,211 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:30,213 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-07-28T06:56:30,216 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-07-28T06:56:30,218 copying build/lib/funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-07-28T06:56:30,222 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-07-28T06:56:30,223 copying build/lib/funid/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-07-28T06:56:30,226 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-28T06:56:30,228 copying build/lib/funid/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-28T06:56:30,232 copying build/lib/funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-28T06:56:30,235 copying build/lib/funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-28T06:56:30,413 copying build/lib/funid/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-28T06:56:30,665 copying build/lib/funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-28T06:56:30,667 copying build/lib/funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-28T06:56:30,670 copying build/lib/funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-07-28T06:56:30,673 running install_egg_info 2023-07-28T06:56:30,705 Copying FunID.egg-info to build/bdist.linux-armv7l/wheel/FunID-0.3.14-py3.9.egg-info 2023-07-28T06:56:30,719 running install_scripts 2023-07-28T06:56:30,742 creating build/bdist.linux-armv7l/wheel/FunID-0.3.14.dist-info/WHEEL 2023-07-28T06:56:30,745 creating '/tmp/pip-wheel-lzk4h557/FunID-0.3.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-28T06:56:30,751 adding 'funid/FunID_GUI.py' 2023-07-28T06:56:30,752 adding 'funid/__init__.py' 2023-07-28T06:56:30,754 adding 'funid/main.py' 2023-07-28T06:56:30,759 adding 'funid/data/Option_manager.xlsx' 2023-07-28T06:56:30,760 adding 'funid/data/__init__.py' 2023-07-28T06:56:30,768 adding 'funid/data/genus_line.txt' 2023-07-28T06:56:30,776 adding 'funid/external/MAFFT_LICENSE' 2023-07-28T06:56:33,878 adding 'funid/external/MAFFT_Windows.zip' 2023-07-28T06:56:34,046 adding 'funid/external/__init__.py' 2023-07-28T06:56:34,056 adding 'funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2023-07-28T06:56:37,022 adding 'funid/external/BLAST_Windows/bin/blastn.exe' 2023-07-28T06:56:37,129 adding 'funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2023-07-28T06:56:37,131 adding 'funid/external/BLAST_Windows/bin/get_species_taxids.sh' 2023-07-28T06:56:37,135 adding 'funid/external/BLAST_Windows/bin/legacy_blast.pl' 2023-07-28T06:56:39,196 adding 'funid/external/BLAST_Windows/bin/makeblastdb.exe' 2023-07-28T06:56:39,296 adding 'funid/external/BLAST_Windows/bin/nghttp2.dll' 2023-07-28T06:56:39,300 adding 'funid/external/BLAST_Windows/bin/update_blastdb.pl' 2023-07-28T06:56:39,303 adding 'funid/external/BLAST_Windows/doc/README.txt' 2023-07-28T06:56:39,360 adding 'funid/external/FastTree_Windows/FastTree.exe' 2023-07-28T06:56:39,401 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2023-07-28T06:56:39,404 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2023-07-28T06:56:39,406 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2023-07-28T06:56:39,412 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2023-07-28T06:56:39,415 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2023-07-28T06:56:39,417 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2023-07-28T06:56:39,419 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2023-07-28T06:56:39,422 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2023-07-28T06:56:39,429 adding 'funid/external/RAxML_Windows/GPL-3.0.txt' 2023-07-28T06:56:39,430 adding 'funid/external/RAxML_Windows/README' 2023-07-28T06:56:39,724 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2023-07-28T06:56:39,816 adding 'funid/external/iqtree-2.1.3-Windows/example.cf' 2023-07-28T06:56:39,832 adding 'funid/external/iqtree-2.1.3-Windows/example.nex' 2023-07-28T06:56:39,844 adding 'funid/external/iqtree-2.1.3-Windows/example.phy' 2023-07-28T06:56:39,875 adding 'funid/external/iqtree-2.1.3-Windows/models.nex' 2023-07-28T06:56:41,599 adding 'funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe' 2023-07-28T06:56:41,849 adding 'funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll' 2023-07-28T06:56:41,864 adding 'funid/external/mmseqs_Windows/LICENSE.md' 2023-07-28T06:56:41,867 adding 'funid/external/mmseqs_Windows/README.md' 2023-07-28T06:56:41,868 adding 'funid/external/mmseqs_Windows/mmseqs.bat' 2023-07-28T06:56:42,003 adding 'funid/external/mmseqs_Windows/bin/busybox.exe' 2023-07-28T06:56:42,018 adding 'funid/external/mmseqs_Windows/bin/cygbz2-1.dll' 2023-07-28T06:56:42,032 adding 'funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2023-07-28T06:56:42,076 adding 'funid/external/mmseqs_Windows/bin/cyggomp-1.dll' 2023-07-28T06:56:42,341 adding 'funid/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2023-07-28T06:56:42,944 adding 'funid/external/mmseqs_Windows/bin/cygwin1.dll' 2023-07-28T06:56:42,982 adding 'funid/external/mmseqs_Windows/bin/cygz.dll' 2023-07-28T06:56:46,269 adding 'funid/external/mmseqs_Windows/bin/mmseqs.exe' 2023-07-28T06:56:46,393 adding 'funid/external/mmseqs_Windows/examples/QUERY.fasta' 2023-07-28T06:56:46,398 adding 'funid/external/mmseqs_Windows/matrices/PAM10.out' 2023-07-28T06:56:46,400 adding 'funid/external/mmseqs_Windows/matrices/PAM100.out' 2023-07-28T06:56:46,401 adding 'funid/external/mmseqs_Windows/matrices/PAM110.out' 2023-07-28T06:56:46,403 adding 'funid/external/mmseqs_Windows/matrices/PAM120.out' 2023-07-28T06:56:46,405 adding 'funid/external/mmseqs_Windows/matrices/PAM130.out' 2023-07-28T06:56:46,406 adding 'funid/external/mmseqs_Windows/matrices/PAM140.out' 2023-07-28T06:56:46,408 adding 'funid/external/mmseqs_Windows/matrices/PAM150.out' 2023-07-28T06:56:46,409 adding 'funid/external/mmseqs_Windows/matrices/PAM160.out' 2023-07-28T06:56:46,411 adding 'funid/external/mmseqs_Windows/matrices/PAM170.out' 2023-07-28T06:56:46,413 adding 'funid/external/mmseqs_Windows/matrices/PAM180.out' 2023-07-28T06:56:46,414 adding 'funid/external/mmseqs_Windows/matrices/PAM190.out' 2023-07-28T06:56:46,416 adding 'funid/external/mmseqs_Windows/matrices/PAM20.out' 2023-07-28T06:56:46,418 adding 'funid/external/mmseqs_Windows/matrices/PAM30.out' 2023-07-28T06:56:46,419 adding 'funid/external/mmseqs_Windows/matrices/PAM40.out' 2023-07-28T06:56:46,421 adding 'funid/external/mmseqs_Windows/matrices/PAM50.out' 2023-07-28T06:56:46,423 adding 'funid/external/mmseqs_Windows/matrices/PAM60.out' 2023-07-28T06:56:46,424 adding 'funid/external/mmseqs_Windows/matrices/PAM70.out' 2023-07-28T06:56:46,426 adding 'funid/external/mmseqs_Windows/matrices/PAM80.out' 2023-07-28T06:56:46,427 adding 'funid/external/mmseqs_Windows/matrices/PAM90.out' 2023-07-28T06:56:46,429 adding 'funid/external/mmseqs_Windows/matrices/VTML10.out' 2023-07-28T06:56:46,431 adding 'funid/external/mmseqs_Windows/matrices/VTML120.out' 2023-07-28T06:56:46,433 adding 'funid/external/mmseqs_Windows/matrices/VTML160.out' 2023-07-28T06:56:46,434 adding 'funid/external/mmseqs_Windows/matrices/VTML20.out' 2023-07-28T06:56:46,436 adding 'funid/external/mmseqs_Windows/matrices/VTML40.out' 2023-07-28T06:56:46,437 adding 'funid/external/mmseqs_Windows/matrices/VTML80.out' 2023-07-28T06:56:46,439 adding 'funid/external/mmseqs_Windows/matrices/blosum100.out' 2023-07-28T06:56:46,440 adding 'funid/external/mmseqs_Windows/matrices/blosum30.out' 2023-07-28T06:56:46,442 adding 'funid/external/mmseqs_Windows/matrices/blosum35.out' 2023-07-28T06:56:46,444 adding 'funid/external/mmseqs_Windows/matrices/blosum40.out' 2023-07-28T06:56:46,445 adding 'funid/external/mmseqs_Windows/matrices/blosum45.out' 2023-07-28T06:56:46,447 adding 'funid/external/mmseqs_Windows/matrices/blosum50.out' 2023-07-28T06:56:46,448 adding 'funid/external/mmseqs_Windows/matrices/blosum55.out' 2023-07-28T06:56:46,450 adding 'funid/external/mmseqs_Windows/matrices/blosum60.out' 2023-07-28T06:56:46,451 adding 'funid/external/mmseqs_Windows/matrices/blosum62.out' 2023-07-28T06:56:46,453 adding 'funid/external/mmseqs_Windows/matrices/blosum65.out' 2023-07-28T06:56:46,454 adding 'funid/external/mmseqs_Windows/matrices/blosum70.out' 2023-07-28T06:56:46,456 adding 'funid/external/mmseqs_Windows/matrices/blosum75.out' 2023-07-28T06:56:46,458 adding 'funid/external/mmseqs_Windows/matrices/blosum80.out' 2023-07-28T06:56:46,459 adding 'funid/external/mmseqs_Windows/matrices/blosum85.out' 2023-07-28T06:56:46,461 adding 'funid/external/mmseqs_Windows/matrices/blosum90.out' 2023-07-28T06:56:46,462 adding 'funid/external/mmseqs_Windows/matrices/blosum95.out' 2023-07-28T06:56:46,463 adding 'funid/external/mmseqs_Windows/matrices/nucleotide.out' 2023-07-28T06:56:46,465 adding 'funid/external/mmseqs_Windows/util/bash-completion.sh' 2023-07-28T06:56:46,468 adding 'funid/external/trimal.v1.2rev59/trimAl/AUTHORS' 2023-07-28T06:56:46,469 adding 'funid/external/trimal.v1.2rev59/trimAl/CHANGELOG' 2023-07-28T06:56:46,475 adding 'funid/external/trimal.v1.2rev59/trimAl/LICENSE' 2023-07-28T06:56:46,477 adding 'funid/external/trimal.v1.2rev59/trimAl/README' 2023-07-28T06:56:46,568 adding 'funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe' 2023-07-28T06:56:46,579 adding 'funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp' 2023-07-28T06:56:46,581 adding 'funid/external/trimal.v1.2rev59/trimAl/source/alignment.h' 2023-07-28T06:56:46,583 adding 'funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp' 2023-07-28T06:56:46,585 adding 'funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp' 2023-07-28T06:56:46,586 adding 'funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h' 2023-07-28T06:56:46,591 adding 'funid/external/trimal.v1.2rev59/trimAl/source/main.cpp' 2023-07-28T06:56:46,593 adding 'funid/external/trimal.v1.2rev59/trimAl/source/makefile' 2023-07-28T06:56:46,595 adding 'funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp' 2023-07-28T06:56:46,600 adding 'funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp' 2023-07-28T06:56:46,602 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp' 2023-07-28T06:56:46,603 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h' 2023-07-28T06:56:46,605 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp' 2023-07-28T06:56:46,607 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h' 2023-07-28T06:56:46,609 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp' 2023-07-28T06:56:46,611 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h' 2023-07-28T06:56:46,612 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp' 2023-07-28T06:56:46,613 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h' 2023-07-28T06:56:46,616 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp' 2023-07-28T06:56:46,617 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h' 2023-07-28T06:56:46,619 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp' 2023-07-28T06:56:46,621 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.h' 2023-07-28T06:56:46,622 adding 'funid/external/trimal.v1.2rev59/trimAl/source/values.h' 2023-07-28T06:56:46,624 adding 'funid/preset/accurate.yaml' 2023-07-28T06:56:46,625 adding 'funid/preset/fast.yaml' 2023-07-28T06:56:46,627 adding 'funid/src/__init__.py' 2023-07-28T06:56:46,629 adding 'funid/src/align.py' 2023-07-28T06:56:46,631 adding 'funid/src/cluster.py' 2023-07-28T06:56:46,633 adding 'funid/src/command.py' 2023-07-28T06:56:46,635 adding 'funid/src/concatenate.py' 2023-07-28T06:56:46,638 adding 'funid/src/dataset.py' 2023-07-28T06:56:46,640 adding 'funid/src/ext.py' 2023-07-28T06:56:46,641 adding 'funid/src/hasher.py' 2023-07-28T06:56:46,644 adding 'funid/src/initialize.py' 2023-07-28T06:56:46,645 adding 'funid/src/logger.py' 2023-07-28T06:56:46,646 adding 'funid/src/logics.py' 2023-07-28T06:56:46,650 adding 'funid/src/manage_input.py' 2023-07-28T06:56:46,652 adding 'funid/src/modeltest.py' 2023-07-28T06:56:46,654 adding 'funid/src/ncbi.py' 2023-07-28T06:56:46,655 adding 'funid/src/opt_generator.py' 2023-07-28T06:56:46,657 adding 'funid/src/patch.py' 2023-07-28T06:56:46,660 adding 'funid/src/reporter.py' 2023-07-28T06:56:46,662 adding 'funid/src/save.py' 2023-07-28T06:56:46,665 adding 'funid/src/search.py' 2023-07-28T06:56:46,666 adding 'funid/src/tool.py' 2023-07-28T06:56:46,668 adding 'funid/src/tree.py' 2023-07-28T06:56:46,673 adding 'funid/src/tree_interpretation.py' 2023-07-28T06:56:46,676 adding 'funid/src/tree_interpretation_pipe.py' 2023-07-28T06:56:46,677 adding 'funid/src/trim.py' 2023-07-28T06:56:46,683 adding 'funid/src/validate_option.py' 2023-07-28T06:56:46,684 adding 'funid/src/validation.py' 2023-07-28T06:56:46,686 adding 'funid/test_dataset/penicillium/Options.config' 2023-07-28T06:56:46,688 adding 'funid/test_dataset/penicillium/preset.yaml' 2023-07-28T06:56:46,726 adding 'funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2023-07-28T06:56:46,734 adding 'funid/test_dataset/penicillium/Query/Query.xlsx' 2023-07-28T06:56:46,740 adding 'FunID-0.3.14.dist-info/LICENSE' 2023-07-28T06:56:46,741 adding 'FunID-0.3.14.dist-info/METADATA' 2023-07-28T06:56:46,742 adding 'FunID-0.3.14.dist-info/WHEEL' 2023-07-28T06:56:46,743 adding 'FunID-0.3.14.dist-info/entry_points.txt' 2023-07-28T06:56:46,744 adding 'FunID-0.3.14.dist-info/top_level.txt' 2023-07-28T06:56:46,747 adding 'FunID-0.3.14.dist-info/RECORD' 2023-07-28T06:56:47,246 removing build/bdist.linux-armv7l/wheel 2023-07-28T06:56:47,408 Building wheel for funid (setup.py): finished with status 'done' 2023-07-28T06:56:47,914 Created wheel for funid: filename=FunID-0.3.14-py3-none-any.whl size=51528351 sha256=798a9dab404093445b78545491aa2f615e97b0a9cdf99f103ee3a06cedb3db14 2023-07-28T06:56:47,915 Stored in directory: /tmp/pip-ephem-wheel-cache-q4e4_97n/wheels/fc/b1/37/4e1f329dda8595663690e958c137a08284c6eabe5677080abe 2023-07-28T06:56:47,947 Successfully built funid 2023-07-28T06:56:49,131 Removed build tracker: '/tmp/pip-build-tracker-hvvmp9tx'