2023-07-31T09:43:23,980 Created temporary directory: /tmp/pip-build-tracker-q1950aya 2023-07-31T09:43:23,983 Initialized build tracking at /tmp/pip-build-tracker-q1950aya 2023-07-31T09:43:23,983 Created build tracker: /tmp/pip-build-tracker-q1950aya 2023-07-31T09:43:23,984 Entered build tracker: /tmp/pip-build-tracker-q1950aya 2023-07-31T09:43:23,985 Created temporary directory: /tmp/pip-wheel-ue2e5rti 2023-07-31T09:43:23,993 Created temporary directory: /tmp/pip-ephem-wheel-cache-m8t15map 2023-07-31T09:43:24,049 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-31T09:43:24,057 2 location(s) to search for versions of vermouth: 2023-07-31T09:43:24,057 * https://pypi.org/simple/vermouth/ 2023-07-31T09:43:24,057 * https://www.piwheels.org/simple/vermouth/ 2023-07-31T09:43:24,058 Fetching project page and analyzing links: https://pypi.org/simple/vermouth/ 2023-07-31T09:43:24,059 Getting page https://pypi.org/simple/vermouth/ 2023-07-31T09:43:24,063 Found index url https://pypi.org/simple/ 2023-07-31T09:43:24,250 Fetched page https://pypi.org/simple/vermouth/ as application/vnd.pypi.simple.v1+json 2023-07-31T09:43:24,264 Found link https://files.pythonhosted.org/packages/c6/b1/274b76764e2ebe0b190708befe8a588d5b645f096609f68723139c80fdee/vermouth-0.1.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.1.0 2023-07-31T09:43:24,265 Found link https://files.pythonhosted.org/packages/ee/d9/cc8ed35bf50924fa9bf4d450c620f6f0f45254b00b30c2fe1a7f76b00368/vermouth-0.2.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.2.0 2023-07-31T09:43:24,265 Found link https://files.pythonhosted.org/packages/c7/6b/bf90515318a6a1c4e2994db43469e52e638d16400068dfcb7d478e9b7c1a/vermouth-0.3.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.0 2023-07-31T09:43:24,266 Found link https://files.pythonhosted.org/packages/b2/d5/07402db0608b5e2bdfbf3f8858ccfd2f454f382f50e4a6940b763426cbea/vermouth-0.3.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.1 2023-07-31T09:43:24,267 Found link https://files.pythonhosted.org/packages/bf/6e/b4e991b3fe595aca6a31cc0449c66b240f50edbf12ebfe80f0d0e592cd5e/vermouth-0.4.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.0 2023-07-31T09:43:24,267 Found link https://files.pythonhosted.org/packages/2c/72/107e8be40ef06f07a809105debbfb1278aceaee8c363189b9c09fe44f8a2/vermouth-0.4.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.1 2023-07-31T09:43:24,268 Found link https://files.pythonhosted.org/packages/d2/86/6cc920072226d0a6e5c0e0a28f85414722b023c66c3cccaaf3492ded2cba/vermouth-0.5.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.5.0 2023-07-31T09:43:24,269 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/ee/ff/589eae88b25a30d0b086231b459f2927ede30c9ef57e92b84a4d479775f2/vermouth-0.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,269 Found link https://files.pythonhosted.org/packages/de/df/6ec1631c808589b3eb5dfbb8e22df2803fde0750c30e6305148f14d72256/vermouth-0.6.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.0 2023-07-31T09:43:24,270 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/de/1f/a29254c72edc7bc749c16f3bf621baa85c6883567469ebcc068b6771abb4/vermouth-0.6.1.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,270 Found link https://files.pythonhosted.org/packages/f5/75/24a94d58fdd58770f2df5325d29034dbd0a072a0bd99905507a297dc3796/vermouth-0.6.1.dev1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.1.dev1 2023-07-31T09:43:24,271 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b8/87/07db5eba7bf97abf229dbf76ff759a877057bf94cffff0ded5909422d14a/vermouth-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,272 Found link https://files.pythonhosted.org/packages/94/1f/e6e57cdc03b6afb830671707bffbfccefd383b3efc9dbe086c1d9037c34d/vermouth-0.7.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.0 2023-07-31T09:43:24,272 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/18/d3/2998a0d56963a85358f7fe385adb3eb9d660c1ce771057008afd5cfd6901/vermouth-0.7.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,273 Found link https://files.pythonhosted.org/packages/43/0b/d6cd081c035a321c1149cd8625fad98d969d6413327bbde731f4d30c5e4f/vermouth-0.7.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.1 2023-07-31T09:43:24,274 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/3a/cb877fe0c178bce0e16ddda0c34fd57902248b07938e3cb72bc1c78bc0d1/vermouth-0.7.2-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,274 Found link https://files.pythonhosted.org/packages/56/a1/1e5a5d54a4d1aed5d50645e5adc4ad026636c1e837d56adce10a54463ad6/vermouth-0.7.2.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.2 2023-07-31T09:43:24,275 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/20/f41a35c1b011d730614adab6923c713a58b7731b28b6488e8190a009aec2/vermouth-0.7.3-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,275 Found link https://files.pythonhosted.org/packages/7d/78/12e0752ceab663c708253421692fbc1ee3b1184e1918e2fbc9b06f4f9097/vermouth-0.7.3.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.3 2023-07-31T09:43:24,276 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/52/34/e7b82dc063e327fc8f47ab01d2b27363ebd3778e8f45d90ec8ad38486480/vermouth-0.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,276 Found link https://files.pythonhosted.org/packages/1a/49/4e20bde1dbaab255a469c7944c1e6a767e7449e1dd5b20e3f2524083d6eb/vermouth-0.8.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.8.1 2023-07-31T09:43:24,277 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/7e/a1/549f337abec9f3a02d249895a849d3d500008e1d39beb38582c97654e949/vermouth-0.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,278 Found link https://files.pythonhosted.org/packages/e2/aa/77a78de364e05a2096416338e09f0e5c371e90c3d434d8fa5ba4982e3175/vermouth-0.9.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.0 2023-07-31T09:43:24,278 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/57/ac/ab6dc7c67e51a2a64dd830a992d3e8e23e785532a87c4e19527cd548bb97/vermouth-0.9.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,279 Found link https://files.pythonhosted.org/packages/59/0d/adbfe0a5c7343fe5a7341c4bfa08216edc273c379e2ce8751a8ff8e223a7/vermouth-0.9.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.1 2023-07-31T09:43:24,279 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/49/75/4ec22d12b99a6be70538a808b22498875fe370f7a80155adc7c3df890c80/vermouth-0.9.3-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2023-07-31T09:43:24,280 Found link https://files.pythonhosted.org/packages/84/fb/8b0409d31d928a77c9ab5f7e28cdc51ae3e749a389e5f523d02d7424a67f/vermouth-0.9.3.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.3 2023-07-31T09:43:24,281 Fetching project page and analyzing links: https://www.piwheels.org/simple/vermouth/ 2023-07-31T09:43:24,282 Getting page https://www.piwheels.org/simple/vermouth/ 2023-07-31T09:43:24,284 Found index url https://www.piwheels.org/simple/ 2023-07-31T09:43:24,495 Fetched page https://www.piwheels.org/simple/vermouth/ as text/html 2023-07-31T09:43:24,508 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.1-py2.py3-none-any.whl#sha256=d081aae0aa5c3bf9d4d2af5221874610db58acfca8080f5cb45f3e76d4624bd8 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,508 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.0-py2.py3-none-any.whl#sha256=af7e389a682ab361277dba8792edfca3ef6ca68d5884be63696c233885c5d31c (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,510 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.8.1-py2.py3-none-any.whl#sha256=f0c9d27ed8796568f7aa9dd2294d10d07fa0f27764ebc2d85ce2715ec2c6a5e5 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,510 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.3-py2.py3-none-any.whl#sha256=a151dce5369142ce6d19a3988e0a1746288f8f2fae07ba59c5e1547df88ad1e3 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,511 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.2-py2.py3-none-any.whl#sha256=229f973ded59ef7883ba4f6fbfa96540cdf40b1b961b12efdbe7d5cb81fac6a1 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,512 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.1-py2.py3-none-any.whl#sha256=fc70883831d576793246091cafc7b008f187bc4faf6a8e560307ab7481e832f2 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,513 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.0-py2.py3-none-any.whl#sha256=5fca42314e68189e5e41f8e4b1722a1b93e3522c211a4504fa1e329991804768 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,513 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.1.dev1-py2.py3-none-any.whl#sha256=40b89874779133125b2ceda6a869dfaee2f00ebbeb4eab86903eb35cf0f51102 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,514 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.0-py2.py3-none-any.whl#sha256=eacf3828c494728c7a206f78e8b3845eed24ca2f25b522c618260811f03231fe (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,514 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.5.0-py2.py3-none-any.whl#sha256=d2dcb086df80653b9602029af7363d8ba15a3660a9eed6f9d5c62f3156f231d2 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,515 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.1-py2.py3-none-any.whl#sha256=7b29e1249b460cbf99396d25d6b7898d394a4f354f06f4574240f9226aaf70de (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,515 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.0-py2.py3-none-any.whl#sha256=1e8e41f2ade8de1b613de4a5fba5a29828bbd23b449c1c6fc503ab0dd52aa61f (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,516 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.1-py2.py3-none-any.whl#sha256=3431b025e519118e06c5ccb19b7a28cbf5f40fc6029496521569f2647a0fab3a (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,516 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.0-py2.py3-none-any.whl#sha256=164322a4f376c6a503756677793912d937dfb6330f3973c9dc8fdb89eafa44e3 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,517 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.2.0-py2.py3-none-any.whl#sha256=bc59509223e3450150b291f42032d3cea874b0544820fe778507ccca510f03b5 (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,517 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.1.0-py2.py3-none-any.whl#sha256=28068403a9546c028aca0d749c0401d00d6aa1ec66f1cf8bb91f8e293294cc2e (from https://www.piwheels.org/simple/vermouth/) 2023-07-31T09:43:24,518 Skipping link: not a file: https://www.piwheels.org/simple/vermouth/ 2023-07-31T09:43:24,519 Skipping link: not a file: https://pypi.org/simple/vermouth/ 2023-07-31T09:43:24,556 Given no hashes to check 1 links for project 'vermouth': discarding no candidates 2023-07-31T09:43:24,590 Collecting vermouth==0.9.3 2023-07-31T09:43:24,595 Created temporary directory: /tmp/pip-unpack-51qfpqs3 2023-07-31T09:43:24,771 Downloading vermouth-0.9.3.tar.gz (2.5 MB) 2023-07-31T09:43:29,186 Added vermouth==0.9.3 from https://files.pythonhosted.org/packages/84/fb/8b0409d31d928a77c9ab5f7e28cdc51ae3e749a389e5f523d02d7424a67f/vermouth-0.9.3.tar.gz to build tracker '/tmp/pip-build-tracker-q1950aya' 2023-07-31T09:43:29,197 Created temporary directory: /tmp/pip-build-env-619n17x7 2023-07-31T09:43:29,217 Installing build dependencies: started 2023-07-31T09:43:29,219 Running command pip subprocess to install build dependencies 2023-07-31T09:43:31,913 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-07-31T09:43:32,681 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-07-31T09:43:33,549 Collecting wheel 2023-07-31T09:43:33,587 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.0-py3-none-any.whl (64 kB) 2023-07-31T09:43:37,374 Collecting setuptools>=30.3.0 2023-07-31T09:43:37,562 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-07-31T09:43:38,144 Collecting pbr 2023-07-31T09:43:38,197 Using cached https://www.piwheels.org/simple/pbr/pbr-5.11.1-py2.py3-none-any.whl (112 kB) 2023-07-31T09:43:43,185 Installing collected packages: wheel, setuptools, pbr 2023-07-31T09:43:43,645 Creating /tmp/pip-build-env-619n17x7/overlay/bin 2023-07-31T09:43:43,649 changing mode of /tmp/pip-build-env-619n17x7/overlay/bin/wheel to 755 2023-07-31T09:43:48,565 changing mode of /tmp/pip-build-env-619n17x7/overlay/bin/pbr to 755 2023-07-31T09:43:48,600 Successfully installed pbr-5.11.1 setuptools-68.0.0 wheel-0.41.0 2023-07-31T09:43:48,631 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-07-31T09:43:48,632 [notice] To update, run: python3 -m pip install --upgrade pip 2023-07-31T09:43:49,073 Installing build dependencies: finished with status 'done' 2023-07-31T09:43:49,096 Getting requirements to build wheel: started 2023-07-31T09:43:49,099 Running command Getting requirements to build wheel 2023-07-31T09:43:50,507 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:50,509 !! 2023-07-31T09:43:50,510 ******************************************************************************** 2023-07-31T09:43:50,511 Usage of dash-separated 'description-content-type' will not be supported in future 2023-07-31T09:43:50,511 versions. Please use the underscore name 'description_content_type' instead. 2023-07-31T09:43:50,512 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:50,513 or your builds will no longer be supported. 2023-07-31T09:43:50,514 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:50,514 ******************************************************************************** 2023-07-31T09:43:50,515 !! 2023-07-31T09:43:50,515 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:50,516 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:50,516 !! 2023-07-31T09:43:50,517 ******************************************************************************** 2023-07-31T09:43:50,517 Usage of dash-separated 'setup-requires' will not be supported in future 2023-07-31T09:43:50,518 versions. Please use the underscore name 'setup_requires' instead. 2023-07-31T09:43:50,519 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:50,519 or your builds will no longer be supported. 2023-07-31T09:43:50,520 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:50,520 ******************************************************************************** 2023-07-31T09:43:50,521 !! 2023-07-31T09:43:50,521 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:50,522 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:50,522 !! 2023-07-31T09:43:50,523 ******************************************************************************** 2023-07-31T09:43:50,523 Usage of dash-separated 'install-requires' will not be supported in future 2023-07-31T09:43:50,524 versions. Please use the underscore name 'install_requires' instead. 2023-07-31T09:43:50,525 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:50,525 or your builds will no longer be supported. 2023-07-31T09:43:50,526 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:50,527 ******************************************************************************** 2023-07-31T09:43:50,528 !! 2023-07-31T09:43:50,528 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:50,528 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:50,529 !! 2023-07-31T09:43:50,529 ******************************************************************************** 2023-07-31T09:43:50,530 Usage of dash-separated 'zip-safe' will not be supported in future 2023-07-31T09:43:50,530 versions. Please use the underscore name 'zip_safe' instead. 2023-07-31T09:43:50,531 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:50,531 or your builds will no longer be supported. 2023-07-31T09:43:50,532 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:50,533 ******************************************************************************** 2023-07-31T09:43:50,533 !! 2023-07-31T09:43:50,534 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:50,615 Getting requirements to build wheel: finished with status 'done' 2023-07-31T09:43:50,641 Created temporary directory: /tmp/pip-modern-metadata-opbo5pj0 2023-07-31T09:43:50,647 Preparing metadata (pyproject.toml): started 2023-07-31T09:43:50,650 Running command Preparing metadata (pyproject.toml) 2023-07-31T09:43:52,547 running dist_info 2023-07-31T09:43:52,551 creating /tmp/pip-modern-metadata-opbo5pj0/vermouth.egg-info 2023-07-31T09:43:52,615 writing /tmp/pip-modern-metadata-opbo5pj0/vermouth.egg-info/PKG-INFO 2023-07-31T09:43:52,622 writing dependency_links to /tmp/pip-modern-metadata-opbo5pj0/vermouth.egg-info/dependency_links.txt 2023-07-31T09:43:52,627 writing requirements to /tmp/pip-modern-metadata-opbo5pj0/vermouth.egg-info/requires.txt 2023-07-31T09:43:52,630 writing top-level names to /tmp/pip-modern-metadata-opbo5pj0/vermouth.egg-info/top_level.txt 2023-07-31T09:43:52,633 [pbr] Processing SOURCES.txt 2023-07-31T09:43:52,634 writing manifest file '/tmp/pip-modern-metadata-opbo5pj0/vermouth.egg-info/SOURCES.txt' 2023-07-31T09:43:53,190 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. 2023-07-31T09:43:53,190 !! 2023-07-31T09:43:53,191 ******************************************************************************** 2023-07-31T09:43:53,192 Please avoid running ``setup.py`` and ``easy_install``. 2023-07-31T09:43:53,192 Instead, use pypa/build, pypa/installer or other 2023-07-31T09:43:53,192 standards-based tools. 2023-07-31T09:43:53,193 See https://github.com/pypa/setuptools/issues/917 for details. 2023-07-31T09:43:53,193 ******************************************************************************** 2023-07-31T09:43:53,194 !! 2023-07-31T09:43:53,194 easy_install.initialize_options(self) 2023-07-31T09:43:53,194 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-07-31T09:43:53,195 !! 2023-07-31T09:43:53,195 ******************************************************************************** 2023-07-31T09:43:53,196 Please avoid running ``setup.py`` directly. 2023-07-31T09:43:53,196 Instead, use pypa/build, pypa/installer or other 2023-07-31T09:43:53,196 standards-based tools. 2023-07-31T09:43:53,197 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-07-31T09:43:53,197 ******************************************************************************** 2023-07-31T09:43:53,198 !! 2023-07-31T09:43:53,198 self.initialize_options() 2023-07-31T09:43:53,198 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:53,199 !! 2023-07-31T09:43:53,199 ******************************************************************************** 2023-07-31T09:43:53,199 Usage of dash-separated 'description-content-type' will not be supported in future 2023-07-31T09:43:53,200 versions. Please use the underscore name 'description_content_type' instead. 2023-07-31T09:43:53,200 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:53,201 or your builds will no longer be supported. 2023-07-31T09:43:53,201 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:53,202 ******************************************************************************** 2023-07-31T09:43:53,202 !! 2023-07-31T09:43:53,202 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:53,203 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:53,203 !! 2023-07-31T09:43:53,204 ******************************************************************************** 2023-07-31T09:43:53,204 Usage of dash-separated 'setup-requires' will not be supported in future 2023-07-31T09:43:53,204 versions. Please use the underscore name 'setup_requires' instead. 2023-07-31T09:43:53,205 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:53,205 or your builds will no longer be supported. 2023-07-31T09:43:53,206 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:53,206 ******************************************************************************** 2023-07-31T09:43:53,207 !! 2023-07-31T09:43:53,207 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:53,207 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:53,207 !! 2023-07-31T09:43:53,208 ******************************************************************************** 2023-07-31T09:43:53,208 Usage of dash-separated 'install-requires' will not be supported in future 2023-07-31T09:43:53,209 versions. Please use the underscore name 'install_requires' instead. 2023-07-31T09:43:53,209 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:53,210 or your builds will no longer be supported. 2023-07-31T09:43:53,210 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:53,210 ******************************************************************************** 2023-07-31T09:43:53,211 !! 2023-07-31T09:43:53,212 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:53,212 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:53,212 !! 2023-07-31T09:43:53,213 ******************************************************************************** 2023-07-31T09:43:53,213 Usage of dash-separated 'zip-safe' will not be supported in future 2023-07-31T09:43:53,213 versions. Please use the underscore name 'zip_safe' instead. 2023-07-31T09:43:53,214 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:53,214 or your builds will no longer be supported. 2023-07-31T09:43:53,215 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:53,215 ******************************************************************************** 2023-07-31T09:43:53,216 !! 2023-07-31T09:43:53,216 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:53,216 warning: no files found matching 'AUTHORS' 2023-07-31T09:43:53,217 warning: no files found matching 'ChangeLog' 2023-07-31T09:43:53,217 warning: no previously-included files found matching '.gitignore' 2023-07-31T09:43:53,217 warning: no previously-included files found matching '.gitreview' 2023-07-31T09:43:53,218 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-07-31T09:43:53,422 adding license file 'LICENSE' 2023-07-31T09:43:53,480 writing manifest file '/tmp/pip-modern-metadata-opbo5pj0/vermouth.egg-info/SOURCES.txt' 2023-07-31T09:43:53,485 creating '/tmp/pip-modern-metadata-opbo5pj0/vermouth-0.9.3.dist-info' 2023-07-31T09:43:53,627 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-07-31T09:43:53,874 Preparing metadata (pyproject.toml): finished with status 'done' 2023-07-31T09:43:53,890 Source in /tmp/pip-wheel-ue2e5rti/vermouth_d624f378642f4cbb985d424a24c55fe4 has version 0.9.3, which satisfies requirement vermouth==0.9.3 from https://files.pythonhosted.org/packages/84/fb/8b0409d31d928a77c9ab5f7e28cdc51ae3e749a389e5f523d02d7424a67f/vermouth-0.9.3.tar.gz 2023-07-31T09:43:53,892 Removed vermouth==0.9.3 from https://files.pythonhosted.org/packages/84/fb/8b0409d31d928a77c9ab5f7e28cdc51ae3e749a389e5f523d02d7424a67f/vermouth-0.9.3.tar.gz from build tracker '/tmp/pip-build-tracker-q1950aya' 2023-07-31T09:43:53,903 Created temporary directory: /tmp/pip-unpack-ypm5obkn 2023-07-31T09:43:53,904 Building wheels for collected packages: vermouth 2023-07-31T09:43:53,913 Created temporary directory: /tmp/pip-wheel-ujhk3lfn 2023-07-31T09:43:53,913 Destination directory: /tmp/pip-wheel-ujhk3lfn 2023-07-31T09:43:53,918 Building wheel for vermouth (pyproject.toml): started 2023-07-31T09:43:53,920 Running command Building wheel for vermouth (pyproject.toml) 2023-07-31T09:43:55,887 running bdist_wheel 2023-07-31T09:43:55,908 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated. 2023-07-31T09:43:55,908 !! 2023-07-31T09:43:55,909 ******************************************************************************** 2023-07-31T09:43:55,909 Please avoid running ``setup.py`` and ``easy_install``. 2023-07-31T09:43:55,909 Instead, use pypa/build, pypa/installer or other 2023-07-31T09:43:55,910 standards-based tools. 2023-07-31T09:43:55,911 See https://github.com/pypa/setuptools/issues/917 for details. 2023-07-31T09:43:55,911 ******************************************************************************** 2023-07-31T09:43:55,912 !! 2023-07-31T09:43:55,912 easy_install.initialize_options(self) 2023-07-31T09:43:55,913 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:55,913 !! 2023-07-31T09:43:55,914 ******************************************************************************** 2023-07-31T09:43:55,914 Usage of dash-separated 'description-content-type' will not be supported in future 2023-07-31T09:43:55,914 versions. Please use the underscore name 'description_content_type' instead. 2023-07-31T09:43:55,915 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:55,915 or your builds will no longer be supported. 2023-07-31T09:43:55,916 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:55,916 ******************************************************************************** 2023-07-31T09:43:55,917 !! 2023-07-31T09:43:55,917 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:55,917 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:55,918 !! 2023-07-31T09:43:55,918 ******************************************************************************** 2023-07-31T09:43:55,918 Usage of dash-separated 'setup-requires' will not be supported in future 2023-07-31T09:43:55,919 versions. Please use the underscore name 'setup_requires' instead. 2023-07-31T09:43:55,919 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:55,920 or your builds will no longer be supported. 2023-07-31T09:43:55,921 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:55,921 ******************************************************************************** 2023-07-31T09:43:55,922 !! 2023-07-31T09:43:55,922 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:55,922 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:55,923 !! 2023-07-31T09:43:55,923 ******************************************************************************** 2023-07-31T09:43:55,924 Usage of dash-separated 'install-requires' will not be supported in future 2023-07-31T09:43:55,924 versions. Please use the underscore name 'install_requires' instead. 2023-07-31T09:43:55,924 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:55,925 or your builds will no longer be supported. 2023-07-31T09:43:55,925 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:55,926 ******************************************************************************** 2023-07-31T09:43:55,926 !! 2023-07-31T09:43:55,927 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:55,927 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/dist.py:745: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-07-31T09:43:55,927 !! 2023-07-31T09:43:55,928 ******************************************************************************** 2023-07-31T09:43:55,928 Usage of dash-separated 'zip-safe' will not be supported in future 2023-07-31T09:43:55,929 versions. Please use the underscore name 'zip_safe' instead. 2023-07-31T09:43:55,929 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-07-31T09:43:55,930 or your builds will no longer be supported. 2023-07-31T09:43:55,930 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-07-31T09:43:55,931 ******************************************************************************** 2023-07-31T09:43:55,932 !! 2023-07-31T09:43:55,932 opt = self.warn_dash_deprecation(opt, section) 2023-07-31T09:43:55,932 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-07-31T09:43:55,946 running build 2023-07-31T09:43:55,946 running build_py 2023-07-31T09:43:55,970 creating build 2023-07-31T09:43:55,970 creating build/lib 2023-07-31T09:43:55,972 creating build/lib/vermouth 2023-07-31T09:43:55,973 creating build/lib/vermouth/tests 2023-07-31T09:43:55,975 creating build/lib/vermouth/tests/integration_tests 2023-07-31T09:43:55,977 copying vermouth/tests/integration_tests/test_integration.py -> build/lib/vermouth/tests/integration_tests 2023-07-31T09:43:55,981 copying vermouth/tests/integration_tests/__init__.py -> build/lib/vermouth/tests/integration_tests 2023-07-31T09:43:55,990 copying vermouth/tests/test_sort_molecule_atoms.py -> build/lib/vermouth/tests 2023-07-31T09:43:55,994 copying vermouth/tests/test_native_forcefield.py -> build/lib/vermouth/tests 2023-07-31T09:43:55,998 copying vermouth/tests/test_grappa.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,002 copying vermouth/tests/test_repair_graph.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,007 copying vermouth/tests/test_forcefield.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,011 copying vermouth/tests/test_edge_tuning.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,016 copying vermouth/tests/datafiles.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,020 copying vermouth/tests/test_mapping_integrative.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,024 copying vermouth/tests/test_average_beads.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,027 copying vermouth/tests/test_do_mapping.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,033 copying vermouth/tests/test_go_vs_includes.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,037 copying vermouth/tests/test_add_molecule_edges.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,040 copying vermouth/tests/molecule_strategies.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,045 copying vermouth/tests/test_set_molecule_meta.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,048 copying vermouth/tests/test_graph_utils.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,053 copying vermouth/tests/test_dssp.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,058 copying vermouth/tests/test_file_writer.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,062 copying vermouth/tests/test_section_parser.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,066 copying vermouth/tests/test_ptm_detection.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,070 copying vermouth/tests/test_geometry.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,074 copying vermouth/tests/test_version.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,077 copying vermouth/tests/test_molecule.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,084 copying vermouth/tests/test_map_input.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,089 copying vermouth/tests/test_logging.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,094 copying vermouth/tests/test_selectors.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,097 copying vermouth/tests/test_annotate_mut_mod.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,102 copying vermouth/tests/test_itp_files.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,106 copying vermouth/tests/test_ismags.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,111 copying vermouth/tests/__init__.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,115 copying vermouth/tests/test_apply_rubber_band.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,120 copying vermouth/tests/test_ff_files.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,126 copying vermouth/tests/helper_functions.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,130 copying vermouth/tests/test_name_moltype.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,134 copying vermouth/tests/test_links.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,139 copying vermouth/tests/test_tune_cystein_bridges.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,143 copying vermouth/tests/test_make_bonds.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,147 copying vermouth/tests/test_map_parser.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,152 copying vermouth/tests/test_utils.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,156 copying vermouth/tests/test_ffinput.py -> build/lib/vermouth/tests 2023-07-31T09:43:56,163 creating build/lib/vermouth/gmx 2023-07-31T09:43:56,165 copying vermouth/gmx/rtp.py -> build/lib/vermouth/gmx 2023-07-31T09:43:56,170 copying vermouth/gmx/gro.py -> build/lib/vermouth/gmx 2023-07-31T09:43:56,175 copying vermouth/gmx/itp.py -> build/lib/vermouth/gmx 2023-07-31T09:43:56,179 copying vermouth/gmx/__init__.py -> build/lib/vermouth/gmx 2023-07-31T09:43:56,183 copying vermouth/gmx/itp_read.py -> build/lib/vermouth/gmx 2023-07-31T09:43:56,192 copying vermouth/geometry.py -> build/lib/vermouth 2023-07-31T09:43:56,196 copying vermouth/log_helpers.py -> build/lib/vermouth 2023-07-31T09:43:56,201 copying vermouth/map_input.py -> build/lib/vermouth 2023-07-31T09:43:56,207 copying vermouth/system.py -> build/lib/vermouth 2023-07-31T09:43:56,211 copying vermouth/molecule.py -> build/lib/vermouth 2023-07-31T09:43:56,217 copying vermouth/parser_utils.py -> build/lib/vermouth 2023-07-31T09:43:56,223 copying vermouth/ffinput.py -> build/lib/vermouth 2023-07-31T09:43:56,228 copying vermouth/file_writer.py -> build/lib/vermouth 2023-07-31T09:43:56,233 copying vermouth/truncating_formatter.py -> build/lib/vermouth 2023-07-31T09:43:56,237 copying vermouth/citation_parser.py -> build/lib/vermouth 2023-07-31T09:43:56,242 copying vermouth/selectors.py -> build/lib/vermouth 2023-07-31T09:43:56,246 copying vermouth/utils.py -> build/lib/vermouth 2023-07-31T09:43:56,250 copying vermouth/forcefield.py -> build/lib/vermouth 2023-07-31T09:43:56,254 copying vermouth/graph_utils.py -> build/lib/vermouth 2023-07-31T09:43:56,258 copying vermouth/map_parser.py -> build/lib/vermouth 2023-07-31T09:43:56,264 copying vermouth/__init__.py -> build/lib/vermouth 2023-07-31T09:43:56,267 copying vermouth/ismags.py -> build/lib/vermouth 2023-07-31T09:43:56,273 copying vermouth/edge_tuning.py -> build/lib/vermouth 2023-07-31T09:43:56,282 creating build/lib/vermouth/processors 2023-07-31T09:43:56,283 copying vermouth/processors/name_moltype.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,287 copying vermouth/processors/do_mapping.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,293 copying vermouth/processors/annotate_mut_mod.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,298 copying vermouth/processors/average_beads.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,302 copying vermouth/processors/locate_charge_dummies.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,306 copying vermouth/processors/merge_chains.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,309 copying vermouth/processors/merge_all_molecules.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,313 copying vermouth/processors/make_bonds.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,317 copying vermouth/processors/repair_graph.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,322 copying vermouth/processors/canonicalize_modifications.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,327 copying vermouth/processors/quote.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,330 copying vermouth/processors/add_molecule_edges.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,334 copying vermouth/processors/pdb_reader.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,337 copying vermouth/processors/set_molecule_meta.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,341 copying vermouth/processors/rename_modified_residues.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,344 copying vermouth/processors/processor.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,348 copying vermouth/processors/go_vs_includes.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,353 copying vermouth/processors/apply_rubber_band.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,359 copying vermouth/processors/apply_posres.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,363 copying vermouth/processors/attach_mass.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,367 copying vermouth/processors/__init__.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,371 copying vermouth/processors/sort_molecule_atoms.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,376 copying vermouth/processors/gro_reader.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,380 copying vermouth/processors/tune_cystein_bridges.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,385 copying vermouth/processors/do_links.py -> build/lib/vermouth/processors 2023-07-31T09:43:56,391 creating build/lib/vermouth/pdb 2023-07-31T09:43:56,392 copying vermouth/pdb/pdb.py -> build/lib/vermouth/pdb 2023-07-31T09:43:56,397 copying vermouth/pdb/__init__.py -> build/lib/vermouth/pdb 2023-07-31T09:43:56,402 creating build/lib/vermouth/dssp 2023-07-31T09:43:56,404 copying vermouth/dssp/dssp.py -> build/lib/vermouth/dssp 2023-07-31T09:43:56,410 copying vermouth/dssp/__init__.py -> build/lib/vermouth/dssp 2023-07-31T09:43:56,413 running egg_info 2023-07-31T09:43:56,483 writing vermouth.egg-info/PKG-INFO 2023-07-31T09:43:56,488 writing dependency_links to vermouth.egg-info/dependency_links.txt 2023-07-31T09:43:56,493 writing requirements to vermouth.egg-info/requires.txt 2023-07-31T09:43:56,495 writing top-level names to vermouth.egg-info/top_level.txt 2023-07-31T09:43:56,498 [pbr] Reusing existing SOURCES.txt 2023-07-31T09:43:56,667 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data' is absent from the `packages` configuration. 2023-07-31T09:43:56,668 !! 2023-07-31T09:43:56,668 ******************************************************************************** 2023-07-31T09:43:56,669 ############################ 2023-07-31T09:43:56,669 # Package would be ignored # 2023-07-31T09:43:56,669 ############################ 2023-07-31T09:43:56,670 Python recognizes 'vermouth.data' as an importable package[^1], 2023-07-31T09:43:56,670 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,670 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,671 package, please make sure that 'vermouth.data' is explicitly added 2023-07-31T09:43:56,671 to the `packages` configuration field. 2023-07-31T09:43:56,672 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,672 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,673 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,674 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,674 If you don't want 'vermouth.data' to be distributed and are 2023-07-31T09:43:56,674 already explicitly excluding 'vermouth.data' via 2023-07-31T09:43:56,675 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,675 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,675 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,676 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,677 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,677 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,678 even if it does not contain any `.py` files. 2023-07-31T09:43:56,678 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,678 directory, all directories are treated like packages. 2023-07-31T09:43:56,679 ******************************************************************************** 2023-07-31T09:43:56,679 !! 2023-07-31T09:43:56,680 check.warn(importable) 2023-07-31T09:43:56,680 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.amber' is absent from the `packages` configuration. 2023-07-31T09:43:56,680 !! 2023-07-31T09:43:56,681 ******************************************************************************** 2023-07-31T09:43:56,681 ############################ 2023-07-31T09:43:56,681 # Package would be ignored # 2023-07-31T09:43:56,682 ############################ 2023-07-31T09:43:56,682 Python recognizes 'vermouth.data.force_fields.amber' as an importable package[^1], 2023-07-31T09:43:56,682 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,683 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,683 package, please make sure that 'vermouth.data.force_fields.amber' is explicitly added 2023-07-31T09:43:56,683 to the `packages` configuration field. 2023-07-31T09:43:56,684 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,684 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,685 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,685 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,686 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,686 If you don't want 'vermouth.data.force_fields.amber' to be distributed and are 2023-07-31T09:43:56,687 already explicitly excluding 'vermouth.data.force_fields.amber' via 2023-07-31T09:43:56,687 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,687 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,687 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,688 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,689 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,689 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,690 even if it does not contain any `.py` files. 2023-07-31T09:43:56,690 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,690 directory, all directories are treated like packages. 2023-07-31T09:43:56,691 ******************************************************************************** 2023-07-31T09:43:56,691 !! 2023-07-31T09:43:56,692 check.warn(importable) 2023-07-31T09:43:56,692 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.charmm' is absent from the `packages` configuration. 2023-07-31T09:43:56,692 !! 2023-07-31T09:43:56,693 ******************************************************************************** 2023-07-31T09:43:56,693 ############################ 2023-07-31T09:43:56,693 # Package would be ignored # 2023-07-31T09:43:56,694 ############################ 2023-07-31T09:43:56,694 Python recognizes 'vermouth.data.force_fields.charmm' as an importable package[^1], 2023-07-31T09:43:56,694 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,695 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,695 package, please make sure that 'vermouth.data.force_fields.charmm' is explicitly added 2023-07-31T09:43:56,695 to the `packages` configuration field. 2023-07-31T09:43:56,696 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,697 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,697 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,699 If you don't want 'vermouth.data.force_fields.charmm' to be distributed and are 2023-07-31T09:43:56,699 already explicitly excluding 'vermouth.data.force_fields.charmm' via 2023-07-31T09:43:56,699 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,699 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,700 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,700 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,701 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,702 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,702 even if it does not contain any `.py` files. 2023-07-31T09:43:56,702 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,703 directory, all directories are treated like packages. 2023-07-31T09:43:56,703 ******************************************************************************** 2023-07-31T09:43:56,703 !! 2023-07-31T09:43:56,704 check.warn(importable) 2023-07-31T09:43:56,704 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.elnedyn21' is absent from the `packages` configuration. 2023-07-31T09:43:56,704 !! 2023-07-31T09:43:56,705 ******************************************************************************** 2023-07-31T09:43:56,705 ############################ 2023-07-31T09:43:56,705 # Package would be ignored # 2023-07-31T09:43:56,706 ############################ 2023-07-31T09:43:56,706 Python recognizes 'vermouth.data.force_fields.elnedyn21' as an importable package[^1], 2023-07-31T09:43:56,706 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,707 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,707 package, please make sure that 'vermouth.data.force_fields.elnedyn21' is explicitly added 2023-07-31T09:43:56,707 to the `packages` configuration field. 2023-07-31T09:43:56,708 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,708 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,709 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,709 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,710 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,710 If you don't want 'vermouth.data.force_fields.elnedyn21' to be distributed and are 2023-07-31T09:43:56,711 already explicitly excluding 'vermouth.data.force_fields.elnedyn21' via 2023-07-31T09:43:56,711 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,711 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,712 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,712 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,713 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,714 even if it does not contain any `.py` files. 2023-07-31T09:43:56,714 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,715 directory, all directories are treated like packages. 2023-07-31T09:43:56,715 ******************************************************************************** 2023-07-31T09:43:56,716 !! 2023-07-31T09:43:56,716 check.warn(importable) 2023-07-31T09:43:56,716 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.elnedyn22' is absent from the `packages` configuration. 2023-07-31T09:43:56,716 !! 2023-07-31T09:43:56,717 ******************************************************************************** 2023-07-31T09:43:56,717 ############################ 2023-07-31T09:43:56,718 # Package would be ignored # 2023-07-31T09:43:56,718 ############################ 2023-07-31T09:43:56,718 Python recognizes 'vermouth.data.force_fields.elnedyn22' as an importable package[^1], 2023-07-31T09:43:56,718 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,719 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,719 package, please make sure that 'vermouth.data.force_fields.elnedyn22' is explicitly added 2023-07-31T09:43:56,720 to the `packages` configuration field. 2023-07-31T09:43:56,720 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,720 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,721 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,721 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,722 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,722 If you don't want 'vermouth.data.force_fields.elnedyn22' to be distributed and are 2023-07-31T09:43:56,723 already explicitly excluding 'vermouth.data.force_fields.elnedyn22' via 2023-07-31T09:43:56,723 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,723 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,724 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,724 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,725 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,726 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,726 even if it does not contain any `.py` files. 2023-07-31T09:43:56,726 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,727 directory, all directories are treated like packages. 2023-07-31T09:43:56,727 ******************************************************************************** 2023-07-31T09:43:56,727 !! 2023-07-31T09:43:56,728 check.warn(importable) 2023-07-31T09:43:56,728 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.elnedyn22p' is absent from the `packages` configuration. 2023-07-31T09:43:56,728 !! 2023-07-31T09:43:56,729 ******************************************************************************** 2023-07-31T09:43:56,729 ############################ 2023-07-31T09:43:56,729 # Package would be ignored # 2023-07-31T09:43:56,730 ############################ 2023-07-31T09:43:56,730 Python recognizes 'vermouth.data.force_fields.elnedyn22p' as an importable package[^1], 2023-07-31T09:43:56,730 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,731 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,731 package, please make sure that 'vermouth.data.force_fields.elnedyn22p' is explicitly added 2023-07-31T09:43:56,731 to the `packages` configuration field. 2023-07-31T09:43:56,732 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,732 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,733 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,733 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,734 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,734 If you don't want 'vermouth.data.force_fields.elnedyn22p' to be distributed and are 2023-07-31T09:43:56,735 already explicitly excluding 'vermouth.data.force_fields.elnedyn22p' via 2023-07-31T09:43:56,735 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,735 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,735 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,736 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,737 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,737 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,738 even if it does not contain any `.py` files. 2023-07-31T09:43:56,738 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,738 directory, all directories are treated like packages. 2023-07-31T09:43:56,739 ******************************************************************************** 2023-07-31T09:43:56,739 !! 2023-07-31T09:43:56,739 check.warn(importable) 2023-07-31T09:43:56,740 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.gromos' is absent from the `packages` configuration. 2023-07-31T09:43:56,740 !! 2023-07-31T09:43:56,741 ******************************************************************************** 2023-07-31T09:43:56,741 ############################ 2023-07-31T09:43:56,741 # Package would be ignored # 2023-07-31T09:43:56,741 ############################ 2023-07-31T09:43:56,742 Python recognizes 'vermouth.data.force_fields.gromos' as an importable package[^1], 2023-07-31T09:43:56,742 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,743 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,743 package, please make sure that 'vermouth.data.force_fields.gromos' is explicitly added 2023-07-31T09:43:56,743 to the `packages` configuration field. 2023-07-31T09:43:56,744 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,744 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,744 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,745 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,746 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,746 If you don't want 'vermouth.data.force_fields.gromos' to be distributed and are 2023-07-31T09:43:56,747 already explicitly excluding 'vermouth.data.force_fields.gromos' via 2023-07-31T09:43:56,747 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,747 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,748 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,749 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,749 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,750 even if it does not contain any `.py` files. 2023-07-31T09:43:56,750 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,750 directory, all directories are treated like packages. 2023-07-31T09:43:56,751 ******************************************************************************** 2023-07-31T09:43:56,751 !! 2023-07-31T09:43:56,752 check.warn(importable) 2023-07-31T09:43:56,752 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.martini22' is absent from the `packages` configuration. 2023-07-31T09:43:56,752 !! 2023-07-31T09:43:56,753 ******************************************************************************** 2023-07-31T09:43:56,753 ############################ 2023-07-31T09:43:56,753 # Package would be ignored # 2023-07-31T09:43:56,754 ############################ 2023-07-31T09:43:56,754 Python recognizes 'vermouth.data.force_fields.martini22' as an importable package[^1], 2023-07-31T09:43:56,754 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,755 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,755 package, please make sure that 'vermouth.data.force_fields.martini22' is explicitly added 2023-07-31T09:43:56,755 to the `packages` configuration field. 2023-07-31T09:43:56,756 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,756 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,756 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,757 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,758 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,758 If you don't want 'vermouth.data.force_fields.martini22' to be distributed and are 2023-07-31T09:43:56,758 already explicitly excluding 'vermouth.data.force_fields.martini22' via 2023-07-31T09:43:56,759 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,759 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,760 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,760 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,761 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,762 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,762 even if it does not contain any `.py` files. 2023-07-31T09:43:56,762 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,763 directory, all directories are treated like packages. 2023-07-31T09:43:56,763 ******************************************************************************** 2023-07-31T09:43:56,763 !! 2023-07-31T09:43:56,764 check.warn(importable) 2023-07-31T09:43:56,764 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.martini22p' is absent from the `packages` configuration. 2023-07-31T09:43:56,764 !! 2023-07-31T09:43:56,765 ******************************************************************************** 2023-07-31T09:43:56,765 ############################ 2023-07-31T09:43:56,765 # Package would be ignored # 2023-07-31T09:43:56,766 ############################ 2023-07-31T09:43:56,766 Python recognizes 'vermouth.data.force_fields.martini22p' as an importable package[^1], 2023-07-31T09:43:56,766 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,767 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,767 package, please make sure that 'vermouth.data.force_fields.martini22p' is explicitly added 2023-07-31T09:43:56,767 to the `packages` configuration field. 2023-07-31T09:43:56,768 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,769 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,769 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,770 If you don't want 'vermouth.data.force_fields.martini22p' to be distributed and are 2023-07-31T09:43:56,771 already explicitly excluding 'vermouth.data.force_fields.martini22p' via 2023-07-31T09:43:56,771 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,771 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,771 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,772 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,773 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,773 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,774 even if it does not contain any `.py` files. 2023-07-31T09:43:56,774 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,774 directory, all directories are treated like packages. 2023-07-31T09:43:56,775 ******************************************************************************** 2023-07-31T09:43:56,775 !! 2023-07-31T09:43:56,775 check.warn(importable) 2023-07-31T09:43:56,776 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.martini3001' is absent from the `packages` configuration. 2023-07-31T09:43:56,776 !! 2023-07-31T09:43:56,777 ******************************************************************************** 2023-07-31T09:43:56,777 ############################ 2023-07-31T09:43:56,777 # Package would be ignored # 2023-07-31T09:43:56,777 ############################ 2023-07-31T09:43:56,778 Python recognizes 'vermouth.data.force_fields.martini3001' as an importable package[^1], 2023-07-31T09:43:56,778 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,779 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,779 package, please make sure that 'vermouth.data.force_fields.martini3001' is explicitly added 2023-07-31T09:43:56,779 to the `packages` configuration field. 2023-07-31T09:43:56,780 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,780 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,780 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,781 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,782 If you don't want 'vermouth.data.force_fields.martini3001' to be distributed and are 2023-07-31T09:43:56,782 already explicitly excluding 'vermouth.data.force_fields.martini3001' via 2023-07-31T09:43:56,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,783 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,784 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,784 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,785 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,785 even if it does not contain any `.py` files. 2023-07-31T09:43:56,786 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,786 directory, all directories are treated like packages. 2023-07-31T09:43:56,786 ******************************************************************************** 2023-07-31T09:43:56,787 !! 2023-07-31T09:43:56,787 check.warn(importable) 2023-07-31T09:43:56,787 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.martini30b32' is absent from the `packages` configuration. 2023-07-31T09:43:56,788 !! 2023-07-31T09:43:56,788 ******************************************************************************** 2023-07-31T09:43:56,789 ############################ 2023-07-31T09:43:56,789 # Package would be ignored # 2023-07-31T09:43:56,789 ############################ 2023-07-31T09:43:56,789 Python recognizes 'vermouth.data.force_fields.martini30b32' as an importable package[^1], 2023-07-31T09:43:56,790 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,790 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,790 package, please make sure that 'vermouth.data.force_fields.martini30b32' is explicitly added 2023-07-31T09:43:56,791 to the `packages` configuration field. 2023-07-31T09:43:56,791 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,792 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,792 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,793 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,793 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,794 If you don't want 'vermouth.data.force_fields.martini30b32' to be distributed and are 2023-07-31T09:43:56,794 already explicitly excluding 'vermouth.data.force_fields.martini30b32' via 2023-07-31T09:43:56,794 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,795 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,795 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,795 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,796 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,797 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,797 even if it does not contain any `.py` files. 2023-07-31T09:43:56,798 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,798 directory, all directories are treated like packages. 2023-07-31T09:43:56,798 ******************************************************************************** 2023-07-31T09:43:56,799 !! 2023-07-31T09:43:56,799 check.warn(importable) 2023-07-31T09:43:56,799 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.force_fields.martini30dev' is absent from the `packages` configuration. 2023-07-31T09:43:56,800 !! 2023-07-31T09:43:56,800 ******************************************************************************** 2023-07-31T09:43:56,800 ############################ 2023-07-31T09:43:56,801 # Package would be ignored # 2023-07-31T09:43:56,801 ############################ 2023-07-31T09:43:56,801 Python recognizes 'vermouth.data.force_fields.martini30dev' as an importable package[^1], 2023-07-31T09:43:56,802 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,802 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,802 package, please make sure that 'vermouth.data.force_fields.martini30dev' is explicitly added 2023-07-31T09:43:56,803 to the `packages` configuration field. 2023-07-31T09:43:56,803 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,804 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,804 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,805 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,805 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,806 If you don't want 'vermouth.data.force_fields.martini30dev' to be distributed and are 2023-07-31T09:43:56,806 already explicitly excluding 'vermouth.data.force_fields.martini30dev' via 2023-07-31T09:43:56,806 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,807 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,807 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,808 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,808 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,809 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,809 even if it does not contain any `.py` files. 2023-07-31T09:43:56,810 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,810 directory, all directories are treated like packages. 2023-07-31T09:43:56,810 ******************************************************************************** 2023-07-31T09:43:56,811 !! 2023-07-31T09:43:56,811 check.warn(importable) 2023-07-31T09:43:56,812 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.mappings' is absent from the `packages` configuration. 2023-07-31T09:43:56,814 !! 2023-07-31T09:43:56,815 ******************************************************************************** 2023-07-31T09:43:56,815 ############################ 2023-07-31T09:43:56,816 # Package would be ignored # 2023-07-31T09:43:56,816 ############################ 2023-07-31T09:43:56,816 Python recognizes 'vermouth.data.mappings' as an importable package[^1], 2023-07-31T09:43:56,816 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,817 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,817 package, please make sure that 'vermouth.data.mappings' is explicitly added 2023-07-31T09:43:56,818 to the `packages` configuration field. 2023-07-31T09:43:56,818 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,818 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,819 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,819 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,820 If you don't want 'vermouth.data.mappings' to be distributed and are 2023-07-31T09:43:56,821 already explicitly excluding 'vermouth.data.mappings' via 2023-07-31T09:43:56,821 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,821 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,822 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,822 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,824 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,824 even if it does not contain any `.py` files. 2023-07-31T09:43:56,824 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,825 directory, all directories are treated like packages. 2023-07-31T09:43:56,825 ******************************************************************************** 2023-07-31T09:43:56,825 !! 2023-07-31T09:43:56,826 check.warn(importable) 2023-07-31T09:43:56,826 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.mappings.elnedyn' is absent from the `packages` configuration. 2023-07-31T09:43:56,826 !! 2023-07-31T09:43:56,827 ******************************************************************************** 2023-07-31T09:43:56,827 ############################ 2023-07-31T09:43:56,827 # Package would be ignored # 2023-07-31T09:43:56,828 ############################ 2023-07-31T09:43:56,828 Python recognizes 'vermouth.data.mappings.elnedyn' as an importable package[^1], 2023-07-31T09:43:56,828 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,829 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,829 package, please make sure that 'vermouth.data.mappings.elnedyn' is explicitly added 2023-07-31T09:43:56,830 to the `packages` configuration field. 2023-07-31T09:43:56,830 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,830 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,831 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,831 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,832 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,832 If you don't want 'vermouth.data.mappings.elnedyn' to be distributed and are 2023-07-31T09:43:56,833 already explicitly excluding 'vermouth.data.mappings.elnedyn' via 2023-07-31T09:43:56,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,833 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,834 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,834 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,835 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,836 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,836 even if it does not contain any `.py` files. 2023-07-31T09:43:56,836 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,836 directory, all directories are treated like packages. 2023-07-31T09:43:56,837 ******************************************************************************** 2023-07-31T09:43:56,837 !! 2023-07-31T09:43:56,838 check.warn(importable) 2023-07-31T09:43:56,838 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.mappings.elnedyn.elnedyn22p' is absent from the `packages` configuration. 2023-07-31T09:43:56,838 !! 2023-07-31T09:43:56,839 ******************************************************************************** 2023-07-31T09:43:56,839 ############################ 2023-07-31T09:43:56,839 # Package would be ignored # 2023-07-31T09:43:56,840 ############################ 2023-07-31T09:43:56,840 Python recognizes 'vermouth.data.mappings.elnedyn.elnedyn22p' as an importable package[^1], 2023-07-31T09:43:56,840 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,841 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,841 package, please make sure that 'vermouth.data.mappings.elnedyn.elnedyn22p' is explicitly added 2023-07-31T09:43:56,841 to the `packages` configuration field. 2023-07-31T09:43:56,842 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,842 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,843 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,843 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,844 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,844 If you don't want 'vermouth.data.mappings.elnedyn.elnedyn22p' to be distributed and are 2023-07-31T09:43:56,845 already explicitly excluding 'vermouth.data.mappings.elnedyn.elnedyn22p' via 2023-07-31T09:43:56,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,845 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,846 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,847 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,848 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,848 even if it does not contain any `.py` files. 2023-07-31T09:43:56,848 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,849 directory, all directories are treated like packages. 2023-07-31T09:43:56,849 ******************************************************************************** 2023-07-31T09:43:56,849 !! 2023-07-31T09:43:56,850 check.warn(importable) 2023-07-31T09:43:56,850 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.mappings.elnedyn21' is absent from the `packages` configuration. 2023-07-31T09:43:56,850 !! 2023-07-31T09:43:56,851 ******************************************************************************** 2023-07-31T09:43:56,851 ############################ 2023-07-31T09:43:56,851 # Package would be ignored # 2023-07-31T09:43:56,852 ############################ 2023-07-31T09:43:56,852 Python recognizes 'vermouth.data.mappings.elnedyn21' as an importable package[^1], 2023-07-31T09:43:56,852 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,853 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,853 package, please make sure that 'vermouth.data.mappings.elnedyn21' is explicitly added 2023-07-31T09:43:56,854 to the `packages` configuration field. 2023-07-31T09:43:56,854 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,854 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,855 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,855 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,856 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,857 If you don't want 'vermouth.data.mappings.elnedyn21' to be distributed and are 2023-07-31T09:43:56,857 already explicitly excluding 'vermouth.data.mappings.elnedyn21' via 2023-07-31T09:43:56,857 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,857 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,858 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,858 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,860 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,860 even if it does not contain any `.py` files. 2023-07-31T09:43:56,860 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,860 directory, all directories are treated like packages. 2023-07-31T09:43:56,861 ******************************************************************************** 2023-07-31T09:43:56,861 !! 2023-07-31T09:43:56,862 check.warn(importable) 2023-07-31T09:43:56,862 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.mappings.martini3001' is absent from the `packages` configuration. 2023-07-31T09:43:56,862 !! 2023-07-31T09:43:56,863 ******************************************************************************** 2023-07-31T09:43:56,863 ############################ 2023-07-31T09:43:56,863 # Package would be ignored # 2023-07-31T09:43:56,864 ############################ 2023-07-31T09:43:56,864 Python recognizes 'vermouth.data.mappings.martini3001' as an importable package[^1], 2023-07-31T09:43:56,864 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,865 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,865 package, please make sure that 'vermouth.data.mappings.martini3001' is explicitly added 2023-07-31T09:43:56,866 to the `packages` configuration field. 2023-07-31T09:43:56,866 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,866 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,867 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,867 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,868 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,868 If you don't want 'vermouth.data.mappings.martini3001' to be distributed and are 2023-07-31T09:43:56,869 already explicitly excluding 'vermouth.data.mappings.martini3001' via 2023-07-31T09:43:56,869 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,869 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,869 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,870 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,871 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,871 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,872 even if it does not contain any `.py` files. 2023-07-31T09:43:56,872 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,872 directory, all directories are treated like packages. 2023-07-31T09:43:56,873 ******************************************************************************** 2023-07-31T09:43:56,873 !! 2023-07-31T09:43:56,874 check.warn(importable) 2023-07-31T09:43:56,874 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.data.mappings.martini30b32' is absent from the `packages` configuration. 2023-07-31T09:43:56,874 !! 2023-07-31T09:43:56,875 ******************************************************************************** 2023-07-31T09:43:56,875 ############################ 2023-07-31T09:43:56,875 # Package would be ignored # 2023-07-31T09:43:56,875 ############################ 2023-07-31T09:43:56,876 Python recognizes 'vermouth.data.mappings.martini30b32' as an importable package[^1], 2023-07-31T09:43:56,876 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,877 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,877 package, please make sure that 'vermouth.data.mappings.martini30b32' is explicitly added 2023-07-31T09:43:56,877 to the `packages` configuration field. 2023-07-31T09:43:56,878 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,878 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,878 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,879 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,879 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,880 If you don't want 'vermouth.data.mappings.martini30b32' to be distributed and are 2023-07-31T09:43:56,880 already explicitly excluding 'vermouth.data.mappings.martini30b32' via 2023-07-31T09:43:56,881 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,881 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,881 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,882 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,882 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,883 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,884 even if it does not contain any `.py` files. 2023-07-31T09:43:56,884 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,884 directory, all directories are treated like packages. 2023-07-31T09:43:56,884 ******************************************************************************** 2023-07-31T09:43:56,885 !! 2023-07-31T09:43:56,885 check.warn(importable) 2023-07-31T09:43:56,886 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.graphing' is absent from the `packages` configuration. 2023-07-31T09:43:56,886 !! 2023-07-31T09:43:56,886 ******************************************************************************** 2023-07-31T09:43:56,887 ############################ 2023-07-31T09:43:56,887 # Package would be ignored # 2023-07-31T09:43:56,887 ############################ 2023-07-31T09:43:56,888 Python recognizes 'vermouth.graphing' as an importable package[^1], 2023-07-31T09:43:56,888 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,888 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,889 package, please make sure that 'vermouth.graphing' is explicitly added 2023-07-31T09:43:56,889 to the `packages` configuration field. 2023-07-31T09:43:56,889 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,890 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,890 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,891 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,891 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,892 If you don't want 'vermouth.graphing' to be distributed and are 2023-07-31T09:43:56,892 already explicitly excluding 'vermouth.graphing' via 2023-07-31T09:43:56,892 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,893 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,893 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,894 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,894 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,895 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,895 even if it does not contain any `.py` files. 2023-07-31T09:43:56,896 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,896 directory, all directories are treated like packages. 2023-07-31T09:43:56,896 ******************************************************************************** 2023-07-31T09:43:56,897 !! 2023-07-31T09:43:56,897 check.warn(importable) 2023-07-31T09:43:56,898 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.tests.data' is absent from the `packages` configuration. 2023-07-31T09:43:56,898 !! 2023-07-31T09:43:56,899 ******************************************************************************** 2023-07-31T09:43:56,899 ############################ 2023-07-31T09:43:56,899 # Package would be ignored # 2023-07-31T09:43:56,899 ############################ 2023-07-31T09:43:56,900 Python recognizes 'vermouth.tests.data' as an importable package[^1], 2023-07-31T09:43:56,900 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,901 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,901 package, please make sure that 'vermouth.tests.data' is explicitly added 2023-07-31T09:43:56,901 to the `packages` configuration field. 2023-07-31T09:43:56,902 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,902 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,902 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,903 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,904 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,904 If you don't want 'vermouth.tests.data' to be distributed and are 2023-07-31T09:43:56,904 already explicitly excluding 'vermouth.tests.data' via 2023-07-31T09:43:56,905 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,905 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,906 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,907 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,907 even if it does not contain any `.py` files. 2023-07-31T09:43:56,908 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,908 directory, all directories are treated like packages. 2023-07-31T09:43:56,908 ******************************************************************************** 2023-07-31T09:43:56,909 !! 2023-07-31T09:43:56,909 check.warn(importable) 2023-07-31T09:43:56,909 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.tests.data.dssp_tests' is absent from the `packages` configuration. 2023-07-31T09:43:56,910 !! 2023-07-31T09:43:56,910 ******************************************************************************** 2023-07-31T09:43:56,911 ############################ 2023-07-31T09:43:56,911 # Package would be ignored # 2023-07-31T09:43:56,911 ############################ 2023-07-31T09:43:56,911 Python recognizes 'vermouth.tests.data.dssp_tests' as an importable package[^1], 2023-07-31T09:43:56,912 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,912 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,913 package, please make sure that 'vermouth.tests.data.dssp_tests' is explicitly added 2023-07-31T09:43:56,913 to the `packages` configuration field. 2023-07-31T09:43:56,913 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,914 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,914 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,915 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,915 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,916 If you don't want 'vermouth.tests.data.dssp_tests' to be distributed and are 2023-07-31T09:43:56,916 already explicitly excluding 'vermouth.tests.data.dssp_tests' via 2023-07-31T09:43:56,916 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,917 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,917 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,917 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,918 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,919 even if it does not contain any `.py` files. 2023-07-31T09:43:56,919 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,920 directory, all directories are treated like packages. 2023-07-31T09:43:56,920 ******************************************************************************** 2023-07-31T09:43:56,920 !! 2023-07-31T09:43:56,921 check.warn(importable) 2023-07-31T09:43:56,921 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.tests.data.force_fields' is absent from the `packages` configuration. 2023-07-31T09:43:56,921 !! 2023-07-31T09:43:56,922 ******************************************************************************** 2023-07-31T09:43:56,922 ############################ 2023-07-31T09:43:56,922 # Package would be ignored # 2023-07-31T09:43:56,923 ############################ 2023-07-31T09:43:56,923 Python recognizes 'vermouth.tests.data.force_fields' as an importable package[^1], 2023-07-31T09:43:56,923 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,924 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,924 package, please make sure that 'vermouth.tests.data.force_fields' is explicitly added 2023-07-31T09:43:56,924 to the `packages` configuration field. 2023-07-31T09:43:56,925 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,925 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,926 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,926 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,927 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,927 If you don't want 'vermouth.tests.data.force_fields' to be distributed and are 2023-07-31T09:43:56,928 already explicitly excluding 'vermouth.tests.data.force_fields' via 2023-07-31T09:43:56,928 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,928 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,928 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,929 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,930 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,930 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,931 even if it does not contain any `.py` files. 2023-07-31T09:43:56,931 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,931 directory, all directories are treated like packages. 2023-07-31T09:43:56,932 ******************************************************************************** 2023-07-31T09:43:56,932 !! 2023-07-31T09:43:56,932 check.warn(importable) 2023-07-31T09:43:56,933 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.tests.data.force_fields.pepplane' is absent from the `packages` configuration. 2023-07-31T09:43:56,933 !! 2023-07-31T09:43:56,934 ******************************************************************************** 2023-07-31T09:43:56,934 ############################ 2023-07-31T09:43:56,934 # Package would be ignored # 2023-07-31T09:43:56,934 ############################ 2023-07-31T09:43:56,935 Python recognizes 'vermouth.tests.data.force_fields.pepplane' as an importable package[^1], 2023-07-31T09:43:56,935 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,936 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,936 package, please make sure that 'vermouth.tests.data.force_fields.pepplane' is explicitly added 2023-07-31T09:43:56,936 to the `packages` configuration field. 2023-07-31T09:43:56,937 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,937 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,937 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,938 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,938 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,939 If you don't want 'vermouth.tests.data.force_fields.pepplane' to be distributed and are 2023-07-31T09:43:56,939 already explicitly excluding 'vermouth.tests.data.force_fields.pepplane' via 2023-07-31T09:43:56,939 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,940 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,940 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,941 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,942 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,942 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,943 even if it does not contain any `.py` files. 2023-07-31T09:43:56,943 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,943 directory, all directories are treated like packages. 2023-07-31T09:43:56,944 ******************************************************************************** 2023-07-31T09:43:56,944 !! 2023-07-31T09:43:56,945 check.warn(importable) 2023-07-31T09:43:56,945 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.tests.data.integration_tests' is absent from the `packages` configuration. 2023-07-31T09:43:56,945 !! 2023-07-31T09:43:56,946 ******************************************************************************** 2023-07-31T09:43:56,946 ############################ 2023-07-31T09:43:56,946 # Package would be ignored # 2023-07-31T09:43:56,947 ############################ 2023-07-31T09:43:56,947 Python recognizes 'vermouth.tests.data.integration_tests' as an importable package[^1], 2023-07-31T09:43:56,947 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:43:56,948 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:43:56,948 package, please make sure that 'vermouth.tests.data.integration_tests' is explicitly added 2023-07-31T09:43:56,949 to the `packages` configuration field. 2023-07-31T09:43:56,949 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:43:56,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:43:56,950 instead of `find_packages(...)`/`find:`). 2023-07-31T09:43:56,950 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:43:56,951 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:43:56,951 If you don't want 'vermouth.tests.data.integration_tests' to be distributed and are 2023-07-31T09:43:56,952 already explicitly excluding 'vermouth.tests.data.integration_tests' via 2023-07-31T09:43:56,952 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:43:56,952 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:43:56,953 combination with a more fine grained `package-data` configuration. 2023-07-31T09:43:56,953 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:43:56,954 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:43:56,955 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:43:56,955 even if it does not contain any `.py` files. 2023-07-31T09:43:56,955 On the other hand, currently there is no concept of package data 2023-07-31T09:43:56,955 directory, all directories are treated like packages. 2023-07-31T09:43:56,956 ******************************************************************************** 2023-07-31T09:43:56,956 !! 2023-07-31T09:43:56,957 check.warn(importable) 2023-07-31T09:43:57,312 creating build/lib/vermouth/tests/data 2023-07-31T09:43:57,314 copying vermouth/tests/data/1bta.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,326 copying vermouth/tests/data/1bta_mutated.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,337 copying vermouth/tests/data/2QWO.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,370 copying vermouth/tests/data/2dn2.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,414 copying vermouth/tests/data/6E8W.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,587 copying vermouth/tests/data/ala5.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,591 copying vermouth/tests/data/ala5_cg.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,595 copying vermouth/tests/data/dna-short.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,600 copying vermouth/tests/data/heme.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,604 copying vermouth/tests/data/tri_alanine.pdb -> build/lib/vermouth/tests/data 2023-07-31T09:43:57,609 creating build/lib/vermouth/tests/data/dssp_tests 2023-07-31T09:43:57,612 copying vermouth/tests/data/dssp_tests/dssp_1bta.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-07-31T09:43:57,618 copying vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-07-31T09:43:57,623 copying vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-07-31T09:43:57,627 copying vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-07-31T09:43:57,633 copying vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-07-31T09:43:57,637 copying vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-07-31T09:43:57,642 copying vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/lib/vermouth/tests/data/dssp_tests 2023-07-31T09:43:57,646 creating build/lib/vermouth/tests/data/force_fields 2023-07-31T09:43:57,647 creating build/lib/vermouth/tests/data/force_fields/martini-test 2023-07-31T09:43:57,649 copying vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/lib/vermouth/tests/data/force_fields/martini-test 2023-07-31T09:43:57,655 creating build/lib/vermouth/tests/data/force_fields/pepplane 2023-07-31T09:43:57,657 copying vermouth/tests/data/force_fields/pepplane/ala.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2023-07-31T09:43:57,661 copying vermouth/tests/data/force_fields/pepplane/general.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2023-07-31T09:43:57,665 copying vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2023-07-31T09:43:57,669 creating build/lib/vermouth/tests/data/force_fields/universal-test 2023-07-31T09:43:57,670 copying vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/lib/vermouth/tests/data/force_fields/universal-test 2023-07-31T09:43:57,676 copying vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/lib/vermouth/tests/data/force_fields/universal-test 2023-07-31T09:43:57,680 creating build/lib/vermouth/tests/data/integration_tests 2023-07-31T09:43:57,681 creating build/lib/vermouth/tests/data/integration_tests/tier-0 2023-07-31T09:43:57,682 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-07-31T09:43:57,685 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-07-31T09:43:57,689 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-07-31T09:43:57,693 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:43:57,695 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:43:57,699 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:43:57,703 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:43:57,707 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:43:57,711 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:43:57,715 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-07-31T09:43:57,717 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-07-31T09:43:57,721 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-07-31T09:43:57,727 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:43:57,729 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:43:57,734 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:43:57,738 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:43:57,743 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:43:57,747 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:43:57,751 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:43:57,755 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:43:57,759 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-07-31T09:43:57,760 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-07-31T09:43:57,765 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-07-31T09:43:57,772 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:43:57,774 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:43:57,779 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:43:57,784 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:43:57,788 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:43:57,793 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:43:57,798 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:43:57,802 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:43:57,806 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-07-31T09:43:57,808 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-07-31T09:43:57,812 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-07-31T09:43:57,818 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:43:57,820 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:43:57,825 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:43:57,831 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:43:57,835 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:43:57,839 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:43:57,844 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:43:57,848 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:43:57,852 creating build/lib/vermouth/tests/data/integration_tests/tier-1 2023-07-31T09:43:57,853 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-07-31T09:43:57,855 copying vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-07-31T09:43:57,860 copying vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-07-31T09:43:57,883 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-07-31T09:43:57,885 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-07-31T09:43:57,889 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-07-31T09:43:57,913 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:43:57,915 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:43:57,923 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:43:57,927 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:43:57,934 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:43:57,938 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:43:57,943 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:43:57,954 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:43:57,958 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:43:57,960 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:43:57,968 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:43:57,972 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:43:57,979 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:43:57,983 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:43:57,987 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:43:57,998 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:43:58,002 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2023-07-31T09:43:58,004 copying vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2023-07-31T09:43:58,014 copying vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2023-07-31T09:43:58,018 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,019 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,025 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,029 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,034 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,038 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,042 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,046 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,052 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,058 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:43:58,062 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-07-31T09:43:58,063 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-07-31T09:43:58,076 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-07-31T09:43:58,080 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:43:58,081 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:43:58,089 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:43:58,093 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:43:58,098 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:43:58,102 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:43:58,106 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:43:58,121 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:43:58,126 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-07-31T09:43:58,128 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-07-31T09:43:58,132 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-07-31T09:43:58,143 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:43:58,144 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:43:58,150 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:43:58,154 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:43:58,159 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:43:58,163 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:43:58,167 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:43:58,174 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:43:58,178 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-07-31T09:43:58,180 copying vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-07-31T09:43:58,184 copying vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-07-31T09:43:58,194 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:43:58,195 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:43:58,201 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:43:58,205 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:43:58,210 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:43:58,214 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:43:58,218 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:43:58,224 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:43:58,228 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2023-07-31T09:43:58,230 copying vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2023-07-31T09:43:58,234 copying vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2023-07-31T09:43:58,244 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:43:58,246 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:43:58,251 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:43:58,256 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:43:58,261 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:43:58,265 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:43:58,270 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:43:58,277 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:43:58,281 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-07-31T09:43:58,283 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-07-31T09:43:58,287 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-07-31T09:43:58,298 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,300 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,307 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,313 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,317 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,321 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,330 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,337 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,345 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:43:58,350 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:43:58,351 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:43:58,356 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:43:58,367 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:43:58,373 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:43:58,379 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:43:58,386 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:43:58,391 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,394 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,402 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,408 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,414 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,419 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,427 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,432 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,440 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:43:58,446 creating build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-07-31T09:43:58,448 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-07-31T09:43:58,453 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-07-31T09:43:58,467 creating build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,469 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,476 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,481 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,487 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,491 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,495 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,503 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,507 copying vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:43:58,512 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2023-07-31T09:43:58,513 copying vermouth/tests/data/integration_tests/tier-1/villin/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2023-07-31T09:43:58,517 copying vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2023-07-31T09:43:58,523 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:43:58,525 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:43:58,530 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:43:58,534 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:43:58,539 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:43:58,544 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:43:58,548 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:43:58,552 creating build/lib/vermouth/tests/data/mappings 2023-07-31T09:43:58,553 creating build/lib/vermouth/tests/data/mappings/universal-test 2023-07-31T09:43:58,555 creating build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2023-07-31T09:43:58,557 copying vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2023-07-31T09:43:58,561 creating build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2023-07-31T09:43:58,563 copying vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2023-07-31T09:43:58,567 copying vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2023-07-31T09:43:58,572 creating build/lib/vermouth/tests/gmx 2023-07-31T09:43:58,574 copying vermouth/tests/gmx/test_gro.py -> build/lib/vermouth/tests/gmx 2023-07-31T09:43:58,579 copying vermouth/tests/gmx/test_itp.py -> build/lib/vermouth/tests/gmx 2023-07-31T09:43:58,585 creating build/lib/vermouth/tests/pdb 2023-07-31T09:43:58,586 copying vermouth/tests/pdb/test_read_pdb.py -> build/lib/vermouth/tests/pdb 2023-07-31T09:43:58,592 copying vermouth/tests/pdb/test_write_pdb.py -> build/lib/vermouth/tests/pdb 2023-07-31T09:43:58,598 creating build/lib/vermouth/data 2023-07-31T09:43:58,599 copying vermouth/data/quotes.txt -> build/lib/vermouth/data 2023-07-31T09:43:58,604 creating build/lib/vermouth/data/force_fields 2023-07-31T09:43:58,604 creating build/lib/vermouth/data/force_fields/amber 2023-07-31T09:43:58,606 copying vermouth/data/force_fields/amber/aminoacids.rtp -> build/lib/vermouth/data/force_fields/amber 2023-07-31T09:43:58,613 copying vermouth/data/force_fields/amber/modifications.ff -> build/lib/vermouth/data/force_fields/amber 2023-07-31T09:43:58,617 creating build/lib/vermouth/data/force_fields/charmm 2023-07-31T09:43:58,619 copying vermouth/data/force_fields/charmm/aminoacids.rtp -> build/lib/vermouth/data/force_fields/charmm 2023-07-31T09:43:58,625 copying vermouth/data/force_fields/charmm/modifications.ff -> build/lib/vermouth/data/force_fields/charmm 2023-07-31T09:43:58,629 copying vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/lib/vermouth/data/force_fields/charmm 2023-07-31T09:43:58,729 creating build/lib/vermouth/data/force_fields/elnedyn21 2023-07-31T09:43:58,730 copying vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2023-07-31T09:43:58,737 copying vermouth/data/force_fields/elnedyn21/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn21 2023-07-31T09:43:58,741 copying vermouth/data/force_fields/elnedyn21/general.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2023-07-31T09:43:58,745 copying vermouth/data/force_fields/elnedyn21/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2023-07-31T09:43:58,749 creating build/lib/vermouth/data/force_fields/elnedyn22 2023-07-31T09:43:58,751 copying vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2023-07-31T09:43:58,757 copying vermouth/data/force_fields/elnedyn22/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22 2023-07-31T09:43:58,760 copying vermouth/data/force_fields/elnedyn22/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2023-07-31T09:43:58,765 copying vermouth/data/force_fields/elnedyn22/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2023-07-31T09:43:58,769 creating build/lib/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:43:58,770 copying vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:43:58,776 copying vermouth/data/force_fields/elnedyn22p/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:43:58,780 copying vermouth/data/force_fields/elnedyn22p/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:43:58,785 copying vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:43:58,788 creating build/lib/vermouth/data/force_fields/gromos 2023-07-31T09:43:58,790 copying vermouth/data/force_fields/gromos/aminoacids.rtp -> build/lib/vermouth/data/force_fields/gromos 2023-07-31T09:43:58,798 copying vermouth/data/force_fields/gromos/cofactors.ff -> build/lib/vermouth/data/force_fields/gromos 2023-07-31T09:43:58,804 copying vermouth/data/force_fields/gromos/modifications.ff -> build/lib/vermouth/data/force_fields/gromos 2023-07-31T09:43:58,808 creating build/lib/vermouth/data/force_fields/martini22 2023-07-31T09:43:58,810 copying vermouth/data/force_fields/martini22/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22 2023-07-31T09:43:58,816 copying vermouth/data/force_fields/martini22/citations.bib -> build/lib/vermouth/data/force_fields/martini22 2023-07-31T09:43:58,820 copying vermouth/data/force_fields/martini22/general.ff -> build/lib/vermouth/data/force_fields/martini22 2023-07-31T09:43:58,824 copying vermouth/data/force_fields/martini22/modifications.ff -> build/lib/vermouth/data/force_fields/martini22 2023-07-31T09:43:58,828 copying vermouth/data/force_fields/martini22/nucleotides.ff -> build/lib/vermouth/data/force_fields/martini22 2023-07-31T09:43:58,832 creating build/lib/vermouth/data/force_fields/martini22p 2023-07-31T09:43:58,834 copying vermouth/data/force_fields/martini22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22p 2023-07-31T09:43:58,840 copying vermouth/data/force_fields/martini22p/citations.bib -> build/lib/vermouth/data/force_fields/martini22p 2023-07-31T09:43:58,844 copying vermouth/data/force_fields/martini22p/general.ff -> build/lib/vermouth/data/force_fields/martini22p 2023-07-31T09:43:58,848 copying vermouth/data/force_fields/martini22p/modifications.ff -> build/lib/vermouth/data/force_fields/martini22p 2023-07-31T09:43:58,852 creating build/lib/vermouth/data/force_fields/martini3001 2023-07-31T09:43:58,854 copying vermouth/data/force_fields/martini3001/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini3001 2023-07-31T09:43:58,860 copying vermouth/data/force_fields/martini3001/citations.bib -> build/lib/vermouth/data/force_fields/martini3001 2023-07-31T09:43:58,864 copying vermouth/data/force_fields/martini3001/general.ff -> build/lib/vermouth/data/force_fields/martini3001 2023-07-31T09:43:58,868 copying vermouth/data/force_fields/martini3001/modifications.ff -> build/lib/vermouth/data/force_fields/martini3001 2023-07-31T09:43:58,874 copying vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/lib/vermouth/data/force_fields/martini3001 2023-07-31T09:43:58,878 creating build/lib/vermouth/data/force_fields/martini30b32 2023-07-31T09:43:58,880 copying vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30b32 2023-07-31T09:43:58,885 copying vermouth/data/force_fields/martini30b32/citations.bib -> build/lib/vermouth/data/force_fields/martini30b32 2023-07-31T09:43:58,889 copying vermouth/data/force_fields/martini30b32/modifications.ff -> build/lib/vermouth/data/force_fields/martini30b32 2023-07-31T09:43:58,893 copying vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/lib/vermouth/data/force_fields/martini30b32 2023-07-31T09:43:58,896 creating build/lib/vermouth/data/force_fields/martini30dev 2023-07-31T09:43:58,898 copying vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30dev 2023-07-31T09:43:58,904 copying vermouth/data/force_fields/martini30dev/citations.bib -> build/lib/vermouth/data/force_fields/martini30dev 2023-07-31T09:43:58,908 copying vermouth/data/force_fields/martini30dev/modifications.ff -> build/lib/vermouth/data/force_fields/martini30dev 2023-07-31T09:43:58,912 creating build/lib/vermouth/data/mappings 2023-07-31T09:43:58,913 copying vermouth/data/mappings/ala.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,917 copying vermouth/data/mappings/ala.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,921 copying vermouth/data/mappings/arg.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,925 copying vermouth/data/mappings/arg.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,929 copying vermouth/data/mappings/arg.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,933 copying vermouth/data/mappings/asn.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,937 copying vermouth/data/mappings/asn.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,942 copying vermouth/data/mappings/asn.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,946 copying vermouth/data/mappings/asp.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,949 copying vermouth/data/mappings/asp.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,954 copying vermouth/data/mappings/asp.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,957 copying vermouth/data/mappings/asp0.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,961 copying vermouth/data/mappings/chol.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,965 copying vermouth/data/mappings/cys.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,969 copying vermouth/data/mappings/cys.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,973 copying vermouth/data/mappings/dmpc.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,977 copying vermouth/data/mappings/dopc.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,981 copying vermouth/data/mappings/dppc.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,986 copying vermouth/data/mappings/dppg.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,990 copying vermouth/data/mappings/fmn.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,994 copying vermouth/data/mappings/gln.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:58,997 copying vermouth/data/mappings/gln.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,001 copying vermouth/data/mappings/gln.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,005 copying vermouth/data/mappings/glu.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,009 copying vermouth/data/mappings/glu.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,013 copying vermouth/data/mappings/glu.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,017 copying vermouth/data/mappings/glu0.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,021 copying vermouth/data/mappings/gly.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,025 copying vermouth/data/mappings/gly.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,029 copying vermouth/data/mappings/his.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,033 copying vermouth/data/mappings/his.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,037 copying vermouth/data/mappings/hsd.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,041 copying vermouth/data/mappings/hse.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,046 copying vermouth/data/mappings/hsp.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,050 copying vermouth/data/mappings/ile.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,055 copying vermouth/data/mappings/ile.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,059 copying vermouth/data/mappings/leu.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,063 copying vermouth/data/mappings/leu.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,068 copying vermouth/data/mappings/lys.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,072 copying vermouth/data/mappings/lys.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,077 copying vermouth/data/mappings/lys.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,081 copying vermouth/data/mappings/met.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,085 copying vermouth/data/mappings/met.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,090 copying vermouth/data/mappings/modifications.gromos.mapping -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,095 copying vermouth/data/mappings/modifications.mapping -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,099 copying vermouth/data/mappings/nad.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,103 copying vermouth/data/mappings/phe.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,108 copying vermouth/data/mappings/phe.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,112 copying vermouth/data/mappings/popc.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,117 copying vermouth/data/mappings/pope.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,122 copying vermouth/data/mappings/popg.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,127 copying vermouth/data/mappings/pops.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,132 copying vermouth/data/mappings/pro.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,137 copying vermouth/data/mappings/pro.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,143 copying vermouth/data/mappings/ser.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,147 copying vermouth/data/mappings/ser.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,152 copying vermouth/data/mappings/ser.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,157 copying vermouth/data/mappings/thr.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,162 copying vermouth/data/mappings/thr.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,167 copying vermouth/data/mappings/thr.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,172 copying vermouth/data/mappings/tpp.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,178 copying vermouth/data/mappings/trp.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,183 copying vermouth/data/mappings/trp.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,187 copying vermouth/data/mappings/tyr.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,192 copying vermouth/data/mappings/tyr.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,197 copying vermouth/data/mappings/val.charmm36.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,202 copying vermouth/data/mappings/val.gromos.map -> build/lib/vermouth/data/mappings 2023-07-31T09:43:59,207 creating build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,209 copying vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,214 copying vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,219 copying vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,224 copying vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,229 copying vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,234 copying vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,238 copying vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,243 copying vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,249 copying vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,255 copying vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,260 copying vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,265 copying vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,269 copying vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,274 copying vermouth/data/mappings/elnedyn/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,280 copying vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,285 copying vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,289 copying vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,294 copying vermouth/data/mappings/elnedyn/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,299 copying vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,304 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,309 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,313 copying vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,318 copying vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,324 copying vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,329 copying vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,334 copying vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,339 copying vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,344 copying vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,349 copying vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,354 copying vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,359 copying vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,363 copying vermouth/data/mappings/elnedyn/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2023-07-31T09:43:59,368 creating build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,369 copying vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,374 copying vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,378 copying vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,383 copying vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,387 copying vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,391 copying vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,395 copying vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,399 copying vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:43:59,403 creating build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,405 copying vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,410 copying vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,414 copying vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,419 copying vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,424 copying vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,428 copying vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,433 copying vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,438 copying vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,443 copying vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,448 copying vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,453 copying vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,457 copying vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,462 copying vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,467 copying vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,472 copying vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,477 copying vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,482 copying vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,486 copying vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,491 copying vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,496 copying vermouth/data/mappings/elnedyn21/modifications.mapping -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,500 copying vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,506 copying vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,510 copying vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,515 copying vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,520 copying vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,525 copying vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,530 copying vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,535 copying vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,540 copying vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2023-07-31T09:43:59,545 creating build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,547 copying vermouth/data/mappings/martini3001/ala.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,552 copying vermouth/data/mappings/martini3001/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,556 copying vermouth/data/mappings/martini3001/antr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,560 copying vermouth/data/mappings/martini3001/arg.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,565 copying vermouth/data/mappings/martini3001/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,569 copying vermouth/data/mappings/martini3001/ash.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,573 copying vermouth/data/mappings/martini3001/asn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,577 copying vermouth/data/mappings/martini3001/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,581 copying vermouth/data/mappings/martini3001/asp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,585 copying vermouth/data/mappings/martini3001/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,589 copying vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,593 copying vermouth/data/mappings/martini3001/bald.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,597 copying vermouth/data/mappings/martini3001/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,602 copying vermouth/data/mappings/martini3001/c3.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,606 copying vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,610 copying vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,614 copying vermouth/data/mappings/martini3001/cume.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,619 copying vermouth/data/mappings/martini3001/cys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,623 copying vermouth/data/mappings/martini3001/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,627 copying vermouth/data/mappings/martini3001/diol.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,631 copying vermouth/data/mappings/martini3001/diox.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,635 copying vermouth/data/mappings/martini3001/dman.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,639 copying vermouth/data/mappings/martini3001/eben.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,643 copying vermouth/data/mappings/martini3001/fura.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,648 copying vermouth/data/mappings/martini3001/glh.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,652 copying vermouth/data/mappings/martini3001/gln.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,656 copying vermouth/data/mappings/martini3001/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,661 copying vermouth/data/mappings/martini3001/glu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,665 copying vermouth/data/mappings/martini3001/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,669 copying vermouth/data/mappings/martini3001/glup.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,674 copying vermouth/data/mappings/martini3001/gly.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,678 copying vermouth/data/mappings/martini3001/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,683 copying vermouth/data/mappings/martini3001/hid.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,687 copying vermouth/data/mappings/martini3001/hie.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,692 copying vermouth/data/mappings/martini3001/hip.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,696 copying vermouth/data/mappings/martini3001/his.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,700 copying vermouth/data/mappings/martini3001/his.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,704 copying vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,708 copying vermouth/data/mappings/martini3001/hse.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,712 copying vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,716 copying vermouth/data/mappings/martini3001/ile.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,721 copying vermouth/data/mappings/martini3001/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,725 copying vermouth/data/mappings/martini3001/imia.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,729 copying vermouth/data/mappings/martini3001/inda.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,734 copying vermouth/data/mappings/martini3001/indo.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,738 copying vermouth/data/mappings/martini3001/leu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,742 copying vermouth/data/mappings/martini3001/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,746 copying vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,751 copying vermouth/data/mappings/martini3001/lyn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,755 copying vermouth/data/mappings/martini3001/lys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,759 copying vermouth/data/mappings/martini3001/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,763 copying vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,767 copying vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,772 copying vermouth/data/mappings/martini3001/meob.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,776 copying vermouth/data/mappings/martini3001/met.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,780 copying vermouth/data/mappings/martini3001/met.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,784 copying vermouth/data/mappings/martini3001/mind.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,788 copying vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,792 copying vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,797 copying vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,801 copying vermouth/data/mappings/martini3001/naft.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,805 copying vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,809 copying vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,813 copying vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,819 copying vermouth/data/mappings/martini3001/phe.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,823 copying vermouth/data/mappings/martini3001/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,827 copying vermouth/data/mappings/martini3001/phen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,831 copying vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,835 copying vermouth/data/mappings/martini3001/prld.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,839 copying vermouth/data/mappings/martini3001/pro.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,844 copying vermouth/data/mappings/martini3001/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,848 copying vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,853 copying vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,857 copying vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,861 copying vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,865 copying vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,869 copying vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,873 copying vermouth/data/mappings/martini3001/ser.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,877 copying vermouth/data/mappings/martini3001/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,881 copying vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,887 copying vermouth/data/mappings/martini3001/styr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,891 copying vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,895 copying vermouth/data/mappings/martini3001/thf.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,899 copying vermouth/data/mappings/martini3001/thip.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,903 copying vermouth/data/mappings/martini3001/thp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,907 copying vermouth/data/mappings/martini3001/thr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,911 copying vermouth/data/mappings/martini3001/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,915 copying vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,919 copying vermouth/data/mappings/martini3001/trp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,923 copying vermouth/data/mappings/martini3001/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,927 copying vermouth/data/mappings/martini3001/tyr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,931 copying vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,935 copying vermouth/data/mappings/martini3001/val.amber.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,939 copying vermouth/data/mappings/martini3001/val.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,943 copying vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,947 copying vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,951 copying vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2023-07-31T09:43:59,957 creating build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,958 copying vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,962 copying vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,967 copying vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,971 copying vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,975 copying vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,979 copying vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,983 copying vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,987 copying vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,992 copying vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:43:59,996 copying vermouth/data/mappings/martini30b32/his.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,000 copying vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,004 copying vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,008 copying vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,013 copying vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,017 copying vermouth/data/mappings/martini30b32/met.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,022 copying vermouth/data/mappings/martini30b32/modifications.mapping -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,026 copying vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,030 copying vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,034 copying vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,038 copying vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,043 copying vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,047 copying vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,051 copying vermouth/data/mappings/martini30b32/val.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2023-07-31T09:44:00,057 creating build/lib/vermouth/graphing 2023-07-31T09:44:00,059 copying vermouth/graphing/grappa.py -> build/lib/vermouth/graphing 2023-07-31T09:44:00,469 running build_scripts 2023-07-31T09:44:00,471 creating build/scripts-3.7 2023-07-31T09:44:00,474 copying and adjusting bin/martinize2 -> build/scripts-3.7 2023-07-31T09:44:00,482 changing mode of build/scripts-3.7/martinize2 from 644 to 755 2023-07-31T09:44:00,485 installing to build/bdist.linux-armv7l/wheel 2023-07-31T09:44:00,486 running install 2023-07-31T09:44:00,599 [pbr] Generating AUTHORS 2023-07-31T09:44:00,626 [pbr] AUTHORS complete (0.0s) 2023-07-31T09:44:00,628 running install_lib 2023-07-31T09:44:00,649 creating build/bdist.linux-armv7l 2023-07-31T09:44:00,651 creating build/bdist.linux-armv7l/wheel 2023-07-31T09:44:00,656 creating build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:00,658 copying build/lib/vermouth/geometry.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:00,663 copying build/lib/vermouth/log_helpers.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:00,669 copying build/lib/vermouth/map_input.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:00,674 copying build/lib/vermouth/system.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:00,679 copying build/lib/vermouth/molecule.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:00,687 creating build/bdist.linux-armv7l/wheel/vermouth/dssp 2023-07-31T09:44:00,690 copying build/lib/vermouth/dssp/dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2023-07-31T09:44:00,696 copying build/lib/vermouth/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2023-07-31T09:44:00,701 creating build/bdist.linux-armv7l/wheel/vermouth/data 2023-07-31T09:44:00,704 copying build/lib/vermouth/data/quotes.txt -> build/bdist.linux-armv7l/wheel/vermouth/data 2023-07-31T09:44:00,710 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields 2023-07-31T09:44:00,713 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-07-31T09:44:00,716 copying build/lib/vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-07-31T09:44:00,722 copying build/lib/vermouth/data/force_fields/martini30b32/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-07-31T09:44:00,726 copying build/lib/vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-07-31T09:44:00,730 copying build/lib/vermouth/data/force_fields/martini30b32/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2023-07-31T09:44:00,736 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-07-31T09:44:00,738 copying build/lib/vermouth/data/force_fields/martini22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-07-31T09:44:00,744 copying build/lib/vermouth/data/force_fields/martini22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-07-31T09:44:00,749 copying build/lib/vermouth/data/force_fields/martini22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-07-31T09:44:00,753 copying build/lib/vermouth/data/force_fields/martini22/nucleotides.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-07-31T09:44:00,758 copying build/lib/vermouth/data/force_fields/martini22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2023-07-31T09:44:00,763 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-07-31T09:44:00,765 copying build/lib/vermouth/data/force_fields/martini22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-07-31T09:44:00,771 copying build/lib/vermouth/data/force_fields/martini22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-07-31T09:44:00,775 copying build/lib/vermouth/data/force_fields/martini22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-07-31T09:44:00,778 copying build/lib/vermouth/data/force_fields/martini22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2023-07-31T09:44:00,783 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-07-31T09:44:00,785 copying build/lib/vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-07-31T09:44:00,790 copying build/lib/vermouth/data/force_fields/elnedyn22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-07-31T09:44:00,794 copying build/lib/vermouth/data/force_fields/elnedyn22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-07-31T09:44:00,797 copying build/lib/vermouth/data/force_fields/elnedyn22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2023-07-31T09:44:00,802 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-07-31T09:44:00,804 copying build/lib/vermouth/data/force_fields/martini3001/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-07-31T09:44:00,810 copying build/lib/vermouth/data/force_fields/martini3001/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-07-31T09:44:00,814 copying build/lib/vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-07-31T09:44:00,818 copying build/lib/vermouth/data/force_fields/martini3001/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-07-31T09:44:00,822 copying build/lib/vermouth/data/force_fields/martini3001/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2023-07-31T09:44:00,827 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:44:00,828 copying build/lib/vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:44:00,834 copying build/lib/vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:44:00,838 copying build/lib/vermouth/data/force_fields/elnedyn22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:44:00,842 copying build/lib/vermouth/data/force_fields/elnedyn22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2023-07-31T09:44:00,847 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2023-07-31T09:44:00,849 copying build/lib/vermouth/data/force_fields/gromos/cofactors.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2023-07-31T09:44:00,855 copying build/lib/vermouth/data/force_fields/gromos/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2023-07-31T09:44:00,859 copying build/lib/vermouth/data/force_fields/gromos/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2023-07-31T09:44:00,868 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2023-07-31T09:44:00,870 copying build/lib/vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2023-07-31T09:44:00,876 copying build/lib/vermouth/data/force_fields/martini30dev/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2023-07-31T09:44:00,880 copying build/lib/vermouth/data/force_fields/martini30dev/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2023-07-31T09:44:00,885 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2023-07-31T09:44:00,887 copying build/lib/vermouth/data/force_fields/amber/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2023-07-31T09:44:00,890 copying build/lib/vermouth/data/force_fields/amber/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2023-07-31T09:44:00,898 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2023-07-31T09:44:00,900 copying build/lib/vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2023-07-31T09:44:00,999 copying build/lib/vermouth/data/force_fields/charmm/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2023-07-31T09:44:01,003 copying build/lib/vermouth/data/force_fields/charmm/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2023-07-31T09:44:01,009 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-07-31T09:44:01,011 copying build/lib/vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-07-31T09:44:01,016 copying build/lib/vermouth/data/force_fields/elnedyn21/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-07-31T09:44:01,019 copying build/lib/vermouth/data/force_fields/elnedyn21/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-07-31T09:44:01,023 copying build/lib/vermouth/data/force_fields/elnedyn21/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2023-07-31T09:44:01,030 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,033 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,035 copying build/lib/vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,039 copying build/lib/vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,043 copying build/lib/vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,047 copying build/lib/vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,050 copying build/lib/vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,054 copying build/lib/vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,057 copying build/lib/vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,061 copying build/lib/vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,065 copying build/lib/vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,068 copying build/lib/vermouth/data/mappings/martini30b32/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,072 copying build/lib/vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,075 copying build/lib/vermouth/data/mappings/martini30b32/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,079 copying build/lib/vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,082 copying build/lib/vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,086 copying build/lib/vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,089 copying build/lib/vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,093 copying build/lib/vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,097 copying build/lib/vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,100 copying build/lib/vermouth/data/mappings/martini30b32/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,104 copying build/lib/vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,107 copying build/lib/vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,111 copying build/lib/vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,114 copying build/lib/vermouth/data/mappings/martini30b32/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2023-07-31T09:44:01,118 copying build/lib/vermouth/data/mappings/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,121 copying build/lib/vermouth/data/mappings/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,125 copying build/lib/vermouth/data/mappings/thr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,128 copying build/lib/vermouth/data/mappings/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,132 copying build/lib/vermouth/data/mappings/arg.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,136 copying build/lib/vermouth/data/mappings/asn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,139 copying build/lib/vermouth/data/mappings/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,143 copying build/lib/vermouth/data/mappings/gln.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,146 copying build/lib/vermouth/data/mappings/met.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,151 copying build/lib/vermouth/data/mappings/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,155 copying build/lib/vermouth/data/mappings/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,159 copying build/lib/vermouth/data/mappings/arg.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,163 copying build/lib/vermouth/data/mappings/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,167 copying build/lib/vermouth/data/mappings/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,173 copying build/lib/vermouth/data/mappings/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,177 copying build/lib/vermouth/data/mappings/thr.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,180 copying build/lib/vermouth/data/mappings/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,184 copying build/lib/vermouth/data/mappings/lys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,187 copying build/lib/vermouth/data/mappings/nad.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,190 copying build/lib/vermouth/data/mappings/val.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,194 copying build/lib/vermouth/data/mappings/fmn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,198 copying build/lib/vermouth/data/mappings/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,201 copying build/lib/vermouth/data/mappings/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,205 copying build/lib/vermouth/data/mappings/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,209 copying build/lib/vermouth/data/mappings/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,213 copying build/lib/vermouth/data/mappings/asp0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,218 copying build/lib/vermouth/data/mappings/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,222 copying build/lib/vermouth/data/mappings/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,225 copying build/lib/vermouth/data/mappings/asn.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,229 copying build/lib/vermouth/data/mappings/trp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,232 copying build/lib/vermouth/data/mappings/asp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,235 copying build/lib/vermouth/data/mappings/pro.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,244 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,245 copying build/lib/vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,249 copying build/lib/vermouth/data/mappings/martini3001/asn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,253 copying build/lib/vermouth/data/mappings/martini3001/lyn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,257 copying build/lib/vermouth/data/mappings/martini3001/thr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,260 copying build/lib/vermouth/data/mappings/martini3001/bald.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,264 copying build/lib/vermouth/data/mappings/martini3001/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,267 copying build/lib/vermouth/data/mappings/martini3001/thip.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,270 copying build/lib/vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,274 copying build/lib/vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,277 copying build/lib/vermouth/data/mappings/martini3001/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,281 copying build/lib/vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,284 copying build/lib/vermouth/data/mappings/martini3001/hid.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,288 copying build/lib/vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,291 copying build/lib/vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,294 copying build/lib/vermouth/data/mappings/martini3001/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,298 copying build/lib/vermouth/data/mappings/martini3001/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,302 copying build/lib/vermouth/data/mappings/martini3001/fura.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,305 copying build/lib/vermouth/data/mappings/martini3001/antr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,309 copying build/lib/vermouth/data/mappings/martini3001/inda.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,312 copying build/lib/vermouth/data/mappings/martini3001/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,316 copying build/lib/vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,319 copying build/lib/vermouth/data/mappings/martini3001/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,323 copying build/lib/vermouth/data/mappings/martini3001/ala.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,327 copying build/lib/vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,330 copying build/lib/vermouth/data/mappings/martini3001/diol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,334 copying build/lib/vermouth/data/mappings/martini3001/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,337 copying build/lib/vermouth/data/mappings/martini3001/glup.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,340 copying build/lib/vermouth/data/mappings/martini3001/eben.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,344 copying build/lib/vermouth/data/mappings/martini3001/lys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,348 copying build/lib/vermouth/data/mappings/martini3001/thp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,351 copying build/lib/vermouth/data/mappings/martini3001/gln.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,354 copying build/lib/vermouth/data/mappings/martini3001/diox.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,358 copying build/lib/vermouth/data/mappings/martini3001/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,362 copying build/lib/vermouth/data/mappings/martini3001/cume.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,365 copying build/lib/vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,369 copying build/lib/vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,372 copying build/lib/vermouth/data/mappings/martini3001/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,375 copying build/lib/vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,379 copying build/lib/vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,382 copying build/lib/vermouth/data/mappings/martini3001/tyr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,386 copying build/lib/vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,389 copying build/lib/vermouth/data/mappings/martini3001/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,393 copying build/lib/vermouth/data/mappings/martini3001/leu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,396 copying build/lib/vermouth/data/mappings/martini3001/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,400 copying build/lib/vermouth/data/mappings/martini3001/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,403 copying build/lib/vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,407 copying build/lib/vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,410 copying build/lib/vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,413 copying build/lib/vermouth/data/mappings/martini3001/phe.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,417 copying build/lib/vermouth/data/mappings/martini3001/c3.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,420 copying build/lib/vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,424 copying build/lib/vermouth/data/mappings/martini3001/phen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,427 copying build/lib/vermouth/data/mappings/martini3001/his.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,430 copying build/lib/vermouth/data/mappings/martini3001/ash.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,434 copying build/lib/vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,437 copying build/lib/vermouth/data/mappings/martini3001/naft.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,440 copying build/lib/vermouth/data/mappings/martini3001/val.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,444 copying build/lib/vermouth/data/mappings/martini3001/glu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,448 copying build/lib/vermouth/data/mappings/martini3001/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,452 copying build/lib/vermouth/data/mappings/martini3001/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,455 copying build/lib/vermouth/data/mappings/martini3001/imia.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,459 copying build/lib/vermouth/data/mappings/martini3001/pro.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,463 copying build/lib/vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,466 copying build/lib/vermouth/data/mappings/martini3001/prld.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,469 copying build/lib/vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,473 copying build/lib/vermouth/data/mappings/martini3001/thf.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,477 copying build/lib/vermouth/data/mappings/martini3001/dman.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,480 copying build/lib/vermouth/data/mappings/martini3001/hip.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,484 copying build/lib/vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,488 copying build/lib/vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,491 copying build/lib/vermouth/data/mappings/martini3001/gly.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,495 copying build/lib/vermouth/data/mappings/martini3001/indo.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,498 copying build/lib/vermouth/data/mappings/martini3001/trp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,502 copying build/lib/vermouth/data/mappings/martini3001/hie.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,505 copying build/lib/vermouth/data/mappings/martini3001/meob.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,509 copying build/lib/vermouth/data/mappings/martini3001/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,512 copying build/lib/vermouth/data/mappings/martini3001/cys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,516 copying build/lib/vermouth/data/mappings/martini3001/ile.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,519 copying build/lib/vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,523 copying build/lib/vermouth/data/mappings/martini3001/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,526 copying build/lib/vermouth/data/mappings/martini3001/asp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,530 copying build/lib/vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,533 copying build/lib/vermouth/data/mappings/martini3001/ser.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,537 copying build/lib/vermouth/data/mappings/martini3001/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,540 copying build/lib/vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,544 copying build/lib/vermouth/data/mappings/martini3001/mind.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,548 copying build/lib/vermouth/data/mappings/martini3001/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,551 copying build/lib/vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,555 copying build/lib/vermouth/data/mappings/martini3001/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,558 copying build/lib/vermouth/data/mappings/martini3001/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,561 copying build/lib/vermouth/data/mappings/martini3001/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,565 copying build/lib/vermouth/data/mappings/martini3001/met.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,568 copying build/lib/vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,572 copying build/lib/vermouth/data/mappings/martini3001/glh.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,576 copying build/lib/vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,579 copying build/lib/vermouth/data/mappings/martini3001/styr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,583 copying build/lib/vermouth/data/mappings/martini3001/arg.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2023-07-31T09:44:01,587 copying build/lib/vermouth/data/mappings/glu0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,590 copying build/lib/vermouth/data/mappings/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,594 copying build/lib/vermouth/data/mappings/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,597 copying build/lib/vermouth/data/mappings/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,601 copying build/lib/vermouth/data/mappings/glu.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,606 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,608 copying build/lib/vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,612 copying build/lib/vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,615 copying build/lib/vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,619 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,622 copying build/lib/vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,626 copying build/lib/vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,630 copying build/lib/vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,634 copying build/lib/vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,638 copying build/lib/vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,642 copying build/lib/vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,646 copying build/lib/vermouth/data/mappings/elnedyn/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,650 copying build/lib/vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,654 copying build/lib/vermouth/data/mappings/elnedyn/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,658 copying build/lib/vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,663 copying build/lib/vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,667 copying build/lib/vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,671 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,675 copying build/lib/vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,679 copying build/lib/vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,682 copying build/lib/vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,687 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,688 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,692 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,696 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,699 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,703 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,706 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,710 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,713 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2023-07-31T09:44:01,718 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,721 copying build/lib/vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,725 copying build/lib/vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,728 copying build/lib/vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,732 copying build/lib/vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,735 copying build/lib/vermouth/data/mappings/elnedyn/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,739 copying build/lib/vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,742 copying build/lib/vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,746 copying build/lib/vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,749 copying build/lib/vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,753 copying build/lib/vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,757 copying build/lib/vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2023-07-31T09:44:01,762 copying build/lib/vermouth/data/mappings/leu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,765 copying build/lib/vermouth/data/mappings/lys.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,769 copying build/lib/vermouth/data/mappings/modifications.gromos.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,772 copying build/lib/vermouth/data/mappings/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,775 copying build/lib/vermouth/data/mappings/gln.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,779 copying build/lib/vermouth/data/mappings/tpp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,783 copying build/lib/vermouth/data/mappings/ala.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,787 copying build/lib/vermouth/data/mappings/cys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,790 copying build/lib/vermouth/data/mappings/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,794 copying build/lib/vermouth/data/mappings/ser.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,797 copying build/lib/vermouth/data/mappings/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,801 copying build/lib/vermouth/data/mappings/gly.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,804 copying build/lib/vermouth/data/mappings/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,808 copying build/lib/vermouth/data/mappings/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,811 copying build/lib/vermouth/data/mappings/asp.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,815 copying build/lib/vermouth/data/mappings/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,818 copying build/lib/vermouth/data/mappings/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,822 copying build/lib/vermouth/data/mappings/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,825 copying build/lib/vermouth/data/mappings/ile.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,829 copying build/lib/vermouth/data/mappings/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,832 copying build/lib/vermouth/data/mappings/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,836 copying build/lib/vermouth/data/mappings/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,840 copying build/lib/vermouth/data/mappings/tyr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,843 copying build/lib/vermouth/data/mappings/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,847 copying build/lib/vermouth/data/mappings/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,851 copying build/lib/vermouth/data/mappings/ser.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,855 copying build/lib/vermouth/data/mappings/glu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,859 copying build/lib/vermouth/data/mappings/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,863 copying build/lib/vermouth/data/mappings/phe.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,868 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,869 copying build/lib/vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,873 copying build/lib/vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,877 copying build/lib/vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,880 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,884 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,887 copying build/lib/vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,890 copying build/lib/vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,894 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,897 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,901 copying build/lib/vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,905 copying build/lib/vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,908 copying build/lib/vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,912 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,915 copying build/lib/vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,919 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,923 copying build/lib/vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,926 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,930 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,933 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,937 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,940 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,944 copying build/lib/vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,947 copying build/lib/vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,951 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,954 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,958 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,961 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,965 copying build/lib/vermouth/data/mappings/elnedyn21/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,968 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2023-07-31T09:44:01,972 copying build/lib/vermouth/data/mappings/his.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2023-07-31T09:44:01,976 copying build/lib/vermouth/parser_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:01,980 copying build/lib/vermouth/ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:01,987 copying build/lib/vermouth/file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:01,991 copying build/lib/vermouth/truncating_formatter.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:01,997 creating build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:01,999 copying build/lib/vermouth/processors/name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,003 copying build/lib/vermouth/processors/do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,008 copying build/lib/vermouth/processors/annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,013 copying build/lib/vermouth/processors/average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,017 copying build/lib/vermouth/processors/locate_charge_dummies.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,021 copying build/lib/vermouth/processors/merge_chains.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,025 copying build/lib/vermouth/processors/merge_all_molecules.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,028 copying build/lib/vermouth/processors/make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,033 copying build/lib/vermouth/processors/repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,038 copying build/lib/vermouth/processors/canonicalize_modifications.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,042 copying build/lib/vermouth/processors/quote.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,046 copying build/lib/vermouth/processors/add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,049 copying build/lib/vermouth/processors/pdb_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,054 copying build/lib/vermouth/processors/set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,057 copying build/lib/vermouth/processors/rename_modified_residues.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,061 copying build/lib/vermouth/processors/processor.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,065 copying build/lib/vermouth/processors/go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,069 copying build/lib/vermouth/processors/apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,074 copying build/lib/vermouth/processors/apply_posres.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,077 copying build/lib/vermouth/processors/attach_mass.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,081 copying build/lib/vermouth/processors/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,084 copying build/lib/vermouth/processors/sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,088 copying build/lib/vermouth/processors/gro_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,091 copying build/lib/vermouth/processors/tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,095 copying build/lib/vermouth/processors/do_links.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2023-07-31T09:44:02,100 copying build/lib/vermouth/citation_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:02,104 copying build/lib/vermouth/selectors.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:02,108 copying build/lib/vermouth/utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:02,112 copying build/lib/vermouth/forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:02,117 creating build/bdist.linux-armv7l/wheel/vermouth/pdb 2023-07-31T09:44:02,119 copying build/lib/vermouth/pdb/pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2023-07-31T09:44:02,126 copying build/lib/vermouth/pdb/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2023-07-31T09:44:02,129 copying build/lib/vermouth/graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:02,135 creating build/bdist.linux-armv7l/wheel/vermouth/graphing 2023-07-31T09:44:02,137 copying build/lib/vermouth/graphing/grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/graphing 2023-07-31T09:44:02,142 copying build/lib/vermouth/map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:02,148 copying build/lib/vermouth/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:02,154 creating build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,155 copying build/lib/vermouth/tests/test_sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,159 copying build/lib/vermouth/tests/test_native_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,163 copying build/lib/vermouth/tests/test_grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,167 copying build/lib/vermouth/tests/test_repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,172 copying build/lib/vermouth/tests/test_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,176 copying build/lib/vermouth/tests/test_edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,180 copying build/lib/vermouth/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,184 copying build/lib/vermouth/tests/test_mapping_integrative.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,188 copying build/lib/vermouth/tests/test_average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,192 copying build/lib/vermouth/tests/test_do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,198 copying build/lib/vermouth/tests/test_go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,202 copying build/lib/vermouth/tests/test_add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,205 copying build/lib/vermouth/tests/molecule_strategies.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,210 copying build/lib/vermouth/tests/test_set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:02,215 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,216 copying build/lib/vermouth/tests/data/dna-short.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,222 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields 2023-07-31T09:44:02,225 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2023-07-31T09:44:02,227 copying build/lib/vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2023-07-31T09:44:02,230 copying build/lib/vermouth/tests/data/force_fields/pepplane/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2023-07-31T09:44:02,234 copying build/lib/vermouth/tests/data/force_fields/pepplane/ala.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2023-07-31T09:44:02,238 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2023-07-31T09:44:02,240 copying build/lib/vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2023-07-31T09:44:02,247 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2023-07-31T09:44:02,248 copying build/lib/vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2023-07-31T09:44:02,252 copying build/lib/vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2023-07-31T09:44:02,258 copying build/lib/vermouth/tests/data/2dn2.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,310 copying build/lib/vermouth/tests/data/2QWO.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,335 copying build/lib/vermouth/tests/data/6E8W.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,507 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-07-31T09:44:02,508 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-07-31T09:44:02,513 copying build/lib/vermouth/tests/data/dssp_tests/dssp_1bta.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-07-31T09:44:02,518 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-07-31T09:44:02,523 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-07-31T09:44:02,527 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-07-31T09:44:02,531 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-07-31T09:44:02,536 copying build/lib/vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/dssp_tests 2023-07-31T09:44:02,540 copying build/lib/vermouth/tests/data/tri_alanine.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,544 copying build/lib/vermouth/tests/data/ala5_cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,549 copying build/lib/vermouth/tests/data/ala5.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,554 copying build/lib/vermouth/tests/data/1bta_mutated.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:02,566 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests 2023-07-31T09:44:02,569 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1 2023-07-31T09:44:02,572 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2023-07-31T09:44:02,573 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2023-07-31T09:44:02,582 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2023-07-31T09:44:02,586 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:44:02,588 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:44:02,592 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:44:02,596 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:44:02,601 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:44:02,606 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:44:02,609 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:44:02,614 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2023-07-31T09:44:02,620 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-07-31T09:44:02,622 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-07-31T09:44:02,632 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2023-07-31T09:44:02,637 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,638 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,642 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,651 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,655 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,660 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,666 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,670 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,675 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2023-07-31T09:44:02,682 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-07-31T09:44:02,683 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-07-31T09:44:02,691 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2023-07-31T09:44:02,696 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:44:02,697 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:44:02,701 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:44:02,705 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:44:02,709 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:44:02,714 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:44:02,717 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:44:02,721 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2023-07-31T09:44:02,727 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-07-31T09:44:02,728 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-07-31T09:44:02,753 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2023-07-31T09:44:02,759 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:44:02,761 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:44:02,765 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:44:02,769 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:44:02,776 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:44:02,786 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:44:02,793 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:44:02,797 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2023-07-31T09:44:02,802 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:44:02,804 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:44:02,816 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:44:02,819 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:44:02,823 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:44:02,828 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:44:02,837 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,839 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,843 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,850 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,854 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,860 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,867 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,870 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,874 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2023-07-31T09:44:02,879 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2023-07-31T09:44:02,886 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2023-07-31T09:44:02,888 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2023-07-31T09:44:02,894 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2023-07-31T09:44:02,898 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:44:02,900 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:44:02,904 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:44:02,907 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:44:02,912 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:44:02,916 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:44:02,920 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2023-07-31T09:44:02,925 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-07-31T09:44:02,926 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-07-31T09:44:02,931 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,933 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,937 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,940 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,946 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,954 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,960 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,964 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,967 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2 2023-07-31T09:44:02,971 copying build/lib/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm 2023-07-31T09:44:02,983 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-07-31T09:44:02,985 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-07-31T09:44:03,008 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2023-07-31T09:44:03,013 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:44:03,015 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:44:03,019 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:44:03,022 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:44:03,030 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:44:03,041 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:44:03,048 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:44:03,052 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2023-07-31T09:44:03,057 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2023-07-31T09:44:03,058 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2023-07-31T09:44:03,064 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,065 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,070 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,073 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,077 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,082 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,086 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,090 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,094 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,099 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2023-07-31T09:44:03,104 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2023-07-31T09:44:03,112 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-07-31T09:44:03,114 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-07-31T09:44:03,121 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2023-07-31T09:44:03,126 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:44:03,128 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:44:03,132 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:44:03,135 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:44:03,140 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:44:03,145 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:44:03,148 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:44:03,152 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2023-07-31T09:44:03,157 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-07-31T09:44:03,159 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-07-31T09:44:03,163 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2023-07-31T09:44:03,176 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:44:03,178 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:44:03,182 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:44:03,185 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:44:03,193 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:44:03,203 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:44:03,207 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:44:03,211 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2023-07-31T09:44:03,217 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0 2023-07-31T09:44:03,219 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-07-31T09:44:03,221 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-07-31T09:44:03,226 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2023-07-31T09:44:03,230 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:44:03,232 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:44:03,236 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:44:03,240 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:44:03,244 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:44:03,247 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2023-07-31T09:44:03,252 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-07-31T09:44:03,254 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-07-31T09:44:03,262 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2023-07-31T09:44:03,266 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:44:03,268 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:44:03,272 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:44:03,276 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:44:03,280 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:44:03,285 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:44:03,289 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:44:03,292 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2023-07-31T09:44:03,298 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-07-31T09:44:03,299 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-07-31T09:44:03,305 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2023-07-31T09:44:03,310 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:44:03,312 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:44:03,316 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:44:03,319 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:44:03,323 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:44:03,327 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:44:03,330 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:44:03,334 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2023-07-31T09:44:03,339 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-07-31T09:44:03,341 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-07-31T09:44:03,347 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2023-07-31T09:44:03,352 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:44:03,354 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:44:03,358 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:44:03,361 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:44:03,365 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:44:03,369 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:44:03,373 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:44:03,376 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2023-07-31T09:44:03,380 copying build/lib/vermouth/tests/data/heme.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:03,384 copying build/lib/vermouth/tests/data/1bta.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2023-07-31T09:44:03,396 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings 2023-07-31T09:44:03,399 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test 2023-07-31T09:44:03,402 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2023-07-31T09:44:03,404 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2023-07-31T09:44:03,407 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2023-07-31T09:44:03,412 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2023-07-31T09:44:03,413 copying build/lib/vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2023-07-31T09:44:03,417 copying build/lib/vermouth/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,422 copying build/lib/vermouth/tests/test_dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,427 copying build/lib/vermouth/tests/test_file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,431 copying build/lib/vermouth/tests/test_section_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,435 copying build/lib/vermouth/tests/test_ptm_detection.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,439 copying build/lib/vermouth/tests/test_geometry.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,443 copying build/lib/vermouth/tests/test_version.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,446 copying build/lib/vermouth/tests/test_molecule.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,453 copying build/lib/vermouth/tests/test_map_input.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,457 copying build/lib/vermouth/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,462 copying build/lib/vermouth/tests/test_selectors.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,466 copying build/lib/vermouth/tests/test_annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,470 copying build/lib/vermouth/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,476 creating build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2023-07-31T09:44:03,478 copying build/lib/vermouth/tests/pdb/test_write_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2023-07-31T09:44:03,482 copying build/lib/vermouth/tests/pdb/test_read_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2023-07-31T09:44:03,486 copying build/lib/vermouth/tests/test_ismags.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,491 copying build/lib/vermouth/tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,495 copying build/lib/vermouth/tests/test_apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,500 copying build/lib/vermouth/tests/test_ff_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,505 copying build/lib/vermouth/tests/helper_functions.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,509 copying build/lib/vermouth/tests/test_name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,514 creating build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2023-07-31T09:44:03,515 copying build/lib/vermouth/tests/integration_tests/test_integration.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2023-07-31T09:44:03,520 copying build/lib/vermouth/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2023-07-31T09:44:03,524 copying build/lib/vermouth/tests/test_links.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,528 copying build/lib/vermouth/tests/test_tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,533 copying build/lib/vermouth/tests/test_make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,538 copying build/lib/vermouth/tests/test_map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,543 copying build/lib/vermouth/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,549 creating build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2023-07-31T09:44:03,551 copying build/lib/vermouth/tests/gmx/test_gro.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2023-07-31T09:44:03,557 copying build/lib/vermouth/tests/gmx/test_itp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2023-07-31T09:44:03,562 copying build/lib/vermouth/tests/test_ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2023-07-31T09:44:03,567 copying build/lib/vermouth/ismags.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:03,573 copying build/lib/vermouth/edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth 2023-07-31T09:44:03,579 creating build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-07-31T09:44:03,582 copying build/lib/vermouth/gmx/rtp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-07-31T09:44:03,588 copying build/lib/vermouth/gmx/gro.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-07-31T09:44:03,593 copying build/lib/vermouth/gmx/itp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-07-31T09:44:03,598 copying build/lib/vermouth/gmx/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-07-31T09:44:03,602 copying build/lib/vermouth/gmx/itp_read.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2023-07-31T09:44:03,608 running install_egg_info 2023-07-31T09:44:03,622 Copying vermouth.egg-info to build/bdist.linux-armv7l/wheel/vermouth-0.9.3-py3.7.egg-info 2023-07-31T09:44:03,657 running install_scripts 2023-07-31T09:44:03,659 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.3.data 2023-07-31T09:44:03,660 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.3.data/scripts 2023-07-31T09:44:03,663 copying build/scripts-3.7/martinize2 -> build/bdist.linux-armv7l/wheel/vermouth-0.9.3.data/scripts 2023-07-31T09:44:03,669 changing mode of build/bdist.linux-armv7l/wheel/vermouth-0.9.3.data/scripts/martinize2 to 755 2023-07-31T09:44:03,710 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.3.dist-info/WHEEL 2023-07-31T09:44:03,717 creating '/tmp/pip-wheel-ujhk3lfn/.tmp-o6pe85pw/vermouth-0.9.3-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-07-31T09:44:03,723 adding 'vermouth/__init__.py' 2023-07-31T09:44:03,727 adding 'vermouth/citation_parser.py' 2023-07-31T09:44:03,732 adding 'vermouth/edge_tuning.py' 2023-07-31T09:44:03,745 adding 'vermouth/ffinput.py' 2023-07-31T09:44:03,750 adding 'vermouth/file_writer.py' 2023-07-31T09:44:03,754 adding 'vermouth/forcefield.py' 2023-07-31T09:44:03,757 adding 'vermouth/geometry.py' 2023-07-31T09:44:03,762 adding 'vermouth/graph_utils.py' 2023-07-31T09:44:03,775 adding 'vermouth/ismags.py' 2023-07-31T09:44:03,780 adding 'vermouth/log_helpers.py' 2023-07-31T09:44:03,787 adding 'vermouth/map_input.py' 2023-07-31T09:44:03,797 adding 'vermouth/map_parser.py' 2023-07-31T09:44:03,813 adding 'vermouth/molecule.py' 2023-07-31T09:44:03,821 adding 'vermouth/parser_utils.py' 2023-07-31T09:44:03,824 adding 'vermouth/selectors.py' 2023-07-31T09:44:03,827 adding 'vermouth/system.py' 2023-07-31T09:44:03,830 adding 'vermouth/truncating_formatter.py' 2023-07-31T09:44:03,834 adding 'vermouth/utils.py' 2023-07-31T09:44:03,838 adding 'vermouth/data/quotes.txt' 2023-07-31T09:44:03,848 adding 'vermouth/data/force_fields/amber/aminoacids.rtp' 2023-07-31T09:44:03,851 adding 'vermouth/data/force_fields/amber/modifications.ff' 2023-07-31T09:44:03,857 adding 'vermouth/data/force_fields/charmm/aminoacids.rtp' 2023-07-31T09:44:03,861 adding 'vermouth/data/force_fields/charmm/modifications.ff' 2023-07-31T09:44:04,375 adding 'vermouth/data/force_fields/charmm/small_molecule_charmm.ff' 2023-07-31T09:44:04,418 adding 'vermouth/data/force_fields/elnedyn21/aminoacids.ff' 2023-07-31T09:44:04,422 adding 'vermouth/data/force_fields/elnedyn21/citations.bib' 2023-07-31T09:44:04,424 adding 'vermouth/data/force_fields/elnedyn21/general.ff' 2023-07-31T09:44:04,427 adding 'vermouth/data/force_fields/elnedyn21/modifications.ff' 2023-07-31T09:44:04,432 adding 'vermouth/data/force_fields/elnedyn22/aminoacids.ff' 2023-07-31T09:44:04,435 adding 'vermouth/data/force_fields/elnedyn22/citations.bib' 2023-07-31T09:44:04,438 adding 'vermouth/data/force_fields/elnedyn22/general.ff' 2023-07-31T09:44:04,440 adding 'vermouth/data/force_fields/elnedyn22/modifications.ff' 2023-07-31T09:44:04,446 adding 'vermouth/data/force_fields/elnedyn22p/aminoacids.ff' 2023-07-31T09:44:04,449 adding 'vermouth/data/force_fields/elnedyn22p/citations.bib' 2023-07-31T09:44:04,452 adding 'vermouth/data/force_fields/elnedyn22p/general.ff' 2023-07-31T09:44:04,454 adding 'vermouth/data/force_fields/elnedyn22p/modifications.ff' 2023-07-31T09:44:04,466 adding 'vermouth/data/force_fields/gromos/aminoacids.rtp' 2023-07-31T09:44:04,472 adding 'vermouth/data/force_fields/gromos/cofactors.ff' 2023-07-31T09:44:04,474 adding 'vermouth/data/force_fields/gromos/modifications.ff' 2023-07-31T09:44:04,481 adding 'vermouth/data/force_fields/martini22/aminoacids.ff' 2023-07-31T09:44:04,484 adding 'vermouth/data/force_fields/martini22/citations.bib' 2023-07-31T09:44:04,487 adding 'vermouth/data/force_fields/martini22/general.ff' 2023-07-31T09:44:04,489 adding 'vermouth/data/force_fields/martini22/modifications.ff' 2023-07-31T09:44:04,493 adding 'vermouth/data/force_fields/martini22/nucleotides.ff' 2023-07-31T09:44:04,499 adding 'vermouth/data/force_fields/martini22p/aminoacids.ff' 2023-07-31T09:44:04,503 adding 'vermouth/data/force_fields/martini22p/citations.bib' 2023-07-31T09:44:04,505 adding 'vermouth/data/force_fields/martini22p/general.ff' 2023-07-31T09:44:04,508 adding 'vermouth/data/force_fields/martini22p/modifications.ff' 2023-07-31T09:44:04,516 adding 'vermouth/data/force_fields/martini3001/aminoacids.ff' 2023-07-31T09:44:04,519 adding 'vermouth/data/force_fields/martini3001/citations.bib' 2023-07-31T09:44:04,522 adding 'vermouth/data/force_fields/martini3001/general.ff' 2023-07-31T09:44:04,524 adding 'vermouth/data/force_fields/martini3001/modifications.ff' 2023-07-31T09:44:04,528 adding 'vermouth/data/force_fields/martini3001/small_molecule_martini3.ff' 2023-07-31T09:44:04,534 adding 'vermouth/data/force_fields/martini30b32/aminoacids.ff' 2023-07-31T09:44:04,537 adding 'vermouth/data/force_fields/martini30b32/citations.bib' 2023-07-31T09:44:04,540 adding 'vermouth/data/force_fields/martini30b32/modifications.ff' 2023-07-31T09:44:04,542 adding 'vermouth/data/force_fields/martini30b32/small_molecules.ff' 2023-07-31T09:44:04,548 adding 'vermouth/data/force_fields/martini30dev/aminoacids.ff' 2023-07-31T09:44:04,551 adding 'vermouth/data/force_fields/martini30dev/citations.bib' 2023-07-31T09:44:04,554 adding 'vermouth/data/force_fields/martini30dev/modifications.ff' 2023-07-31T09:44:04,560 adding 'vermouth/data/mappings/ala.charmm36.map' 2023-07-31T09:44:04,563 adding 'vermouth/data/mappings/ala.gromos.map' 2023-07-31T09:44:04,566 adding 'vermouth/data/mappings/arg.charmm36.map' 2023-07-31T09:44:04,568 adding 'vermouth/data/mappings/arg.charmm36.martini22p.map' 2023-07-31T09:44:04,571 adding 'vermouth/data/mappings/arg.gromos.map' 2023-07-31T09:44:04,574 adding 'vermouth/data/mappings/asn.charmm36.map' 2023-07-31T09:44:04,576 adding 'vermouth/data/mappings/asn.charmm36.martini22p.map' 2023-07-31T09:44:04,579 adding 'vermouth/data/mappings/asn.gromos.map' 2023-07-31T09:44:04,581 adding 'vermouth/data/mappings/asp.charmm36.map' 2023-07-31T09:44:04,584 adding 'vermouth/data/mappings/asp.charmm36.martini22p.map' 2023-07-31T09:44:04,586 adding 'vermouth/data/mappings/asp.gromos.map' 2023-07-31T09:44:04,589 adding 'vermouth/data/mappings/asp0.gromos.map' 2023-07-31T09:44:04,592 adding 'vermouth/data/mappings/chol.charmm36.map' 2023-07-31T09:44:04,595 adding 'vermouth/data/mappings/cys.charmm36.map' 2023-07-31T09:44:04,597 adding 'vermouth/data/mappings/cys.gromos.map' 2023-07-31T09:44:04,601 adding 'vermouth/data/mappings/dmpc.charmm36.map' 2023-07-31T09:44:04,605 adding 'vermouth/data/mappings/dopc.charmm36.map' 2023-07-31T09:44:04,609 adding 'vermouth/data/mappings/dppc.charmm36.map' 2023-07-31T09:44:04,612 adding 'vermouth/data/mappings/dppg.charmm36.map' 2023-07-31T09:44:04,614 adding 'vermouth/data/mappings/fmn.gromos.map' 2023-07-31T09:44:04,617 adding 'vermouth/data/mappings/gln.charmm36.map' 2023-07-31T09:44:04,620 adding 'vermouth/data/mappings/gln.charmm36.martini22p.map' 2023-07-31T09:44:04,622 adding 'vermouth/data/mappings/gln.gromos.map' 2023-07-31T09:44:04,625 adding 'vermouth/data/mappings/glu.charmm36.map' 2023-07-31T09:44:04,628 adding 'vermouth/data/mappings/glu.charmm36.martini22p.map' 2023-07-31T09:44:04,632 adding 'vermouth/data/mappings/glu.gromos.map' 2023-07-31T09:44:04,634 adding 'vermouth/data/mappings/glu0.gromos.map' 2023-07-31T09:44:04,637 adding 'vermouth/data/mappings/gly.charmm36.map' 2023-07-31T09:44:04,639 adding 'vermouth/data/mappings/gly.gromos.map' 2023-07-31T09:44:04,642 adding 'vermouth/data/mappings/his.charmm36.map' 2023-07-31T09:44:04,644 adding 'vermouth/data/mappings/his.gromos.map' 2023-07-31T09:44:04,647 adding 'vermouth/data/mappings/hsd.charmm36.map' 2023-07-31T09:44:04,650 adding 'vermouth/data/mappings/hse.charmm36.map' 2023-07-31T09:44:04,653 adding 'vermouth/data/mappings/hsp.charmm36.map' 2023-07-31T09:44:04,655 adding 'vermouth/data/mappings/ile.charmm36.map' 2023-07-31T09:44:04,658 adding 'vermouth/data/mappings/ile.gromos.map' 2023-07-31T09:44:04,660 adding 'vermouth/data/mappings/leu.charmm36.map' 2023-07-31T09:44:04,663 adding 'vermouth/data/mappings/leu.gromos.map' 2023-07-31T09:44:04,665 adding 'vermouth/data/mappings/lys.charmm36.map' 2023-07-31T09:44:04,668 adding 'vermouth/data/mappings/lys.charmm36.martini22p.map' 2023-07-31T09:44:04,671 adding 'vermouth/data/mappings/lys.gromos.map' 2023-07-31T09:44:04,673 adding 'vermouth/data/mappings/met.charmm36.map' 2023-07-31T09:44:04,676 adding 'vermouth/data/mappings/met.gromos.map' 2023-07-31T09:44:04,678 adding 'vermouth/data/mappings/modifications.gromos.mapping' 2023-07-31T09:44:04,681 adding 'vermouth/data/mappings/modifications.mapping' 2023-07-31T09:44:04,684 adding 'vermouth/data/mappings/nad.gromos.map' 2023-07-31T09:44:04,687 adding 'vermouth/data/mappings/phe.charmm36.map' 2023-07-31T09:44:04,689 adding 'vermouth/data/mappings/phe.gromos.map' 2023-07-31T09:44:04,693 adding 'vermouth/data/mappings/popc.charmm36.map' 2023-07-31T09:44:04,697 adding 'vermouth/data/mappings/pope.charmm36.map' 2023-07-31T09:44:04,700 adding 'vermouth/data/mappings/popg.charmm36.map' 2023-07-31T09:44:04,704 adding 'vermouth/data/mappings/pops.charmm36.map' 2023-07-31T09:44:04,707 adding 'vermouth/data/mappings/pro.charmm36.map' 2023-07-31T09:44:04,709 adding 'vermouth/data/mappings/pro.gromos.map' 2023-07-31T09:44:04,712 adding 'vermouth/data/mappings/ser.charmm36.map' 2023-07-31T09:44:04,715 adding 'vermouth/data/mappings/ser.charmm36.martini22p.map' 2023-07-31T09:44:04,717 adding 'vermouth/data/mappings/ser.gromos.map' 2023-07-31T09:44:04,720 adding 'vermouth/data/mappings/thr.charmm36.map' 2023-07-31T09:44:04,722 adding 'vermouth/data/mappings/thr.charmm36.martini22p.map' 2023-07-31T09:44:04,725 adding 'vermouth/data/mappings/thr.gromos.map' 2023-07-31T09:44:04,727 adding 'vermouth/data/mappings/tpp.gromos.map' 2023-07-31T09:44:04,730 adding 'vermouth/data/mappings/trp.charmm36.map' 2023-07-31T09:44:04,733 adding 'vermouth/data/mappings/trp.gromos.map' 2023-07-31T09:44:04,736 adding 'vermouth/data/mappings/tyr.charmm36.map' 2023-07-31T09:44:04,738 adding 'vermouth/data/mappings/tyr.gromos.map' 2023-07-31T09:44:04,741 adding 'vermouth/data/mappings/val.charmm36.map' 2023-07-31T09:44:04,743 adding 'vermouth/data/mappings/val.gromos.map' 2023-07-31T09:44:04,748 adding 'vermouth/data/mappings/elnedyn/ala.charmm36.map' 2023-07-31T09:44:04,751 adding 'vermouth/data/mappings/elnedyn/arg.charmm36.map' 2023-07-31T09:44:04,754 adding 'vermouth/data/mappings/elnedyn/asn.charmm36.map' 2023-07-31T09:44:04,756 adding 'vermouth/data/mappings/elnedyn/asp.charmm36.map' 2023-07-31T09:44:04,760 adding 'vermouth/data/mappings/elnedyn/chol.charmm36.map' 2023-07-31T09:44:04,763 adding 'vermouth/data/mappings/elnedyn/cys.charmm36.map' 2023-07-31T09:44:04,766 adding 'vermouth/data/mappings/elnedyn/dmpc.charmm36.map' 2023-07-31T09:44:04,770 adding 'vermouth/data/mappings/elnedyn/dopc.charmm36.map' 2023-07-31T09:44:04,774 adding 'vermouth/data/mappings/elnedyn/dppc.charmm36.map' 2023-07-31T09:44:04,777 adding 'vermouth/data/mappings/elnedyn/dppg.charmm36.map' 2023-07-31T09:44:04,780 adding 'vermouth/data/mappings/elnedyn/gln.charmm36.map' 2023-07-31T09:44:04,783 adding 'vermouth/data/mappings/elnedyn/glu.charmm36.map' 2023-07-31T09:44:04,786 adding 'vermouth/data/mappings/elnedyn/gly.charmm36.map' 2023-07-31T09:44:04,789 adding 'vermouth/data/mappings/elnedyn/his.charmm36.map' 2023-07-31T09:44:04,792 adding 'vermouth/data/mappings/elnedyn/ile.charmm36.map' 2023-07-31T09:44:04,794 adding 'vermouth/data/mappings/elnedyn/leu.charmm36.map' 2023-07-31T09:44:04,797 adding 'vermouth/data/mappings/elnedyn/lys.charmm36.map' 2023-07-31T09:44:04,800 adding 'vermouth/data/mappings/elnedyn/met.charmm36.map' 2023-07-31T09:44:04,802 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping' 2023-07-31T09:44:04,805 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping' 2023-07-31T09:44:04,808 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping' 2023-07-31T09:44:04,810 adding 'vermouth/data/mappings/elnedyn/phe.charmm36.map' 2023-07-31T09:44:04,814 adding 'vermouth/data/mappings/elnedyn/popc.charmm36.map' 2023-07-31T09:44:04,818 adding 'vermouth/data/mappings/elnedyn/pope.charmm36.map' 2023-07-31T09:44:04,822 adding 'vermouth/data/mappings/elnedyn/popg.charmm36.map' 2023-07-31T09:44:04,825 adding 'vermouth/data/mappings/elnedyn/pops.charmm36.map' 2023-07-31T09:44:04,828 adding 'vermouth/data/mappings/elnedyn/pro.charmm36.map' 2023-07-31T09:44:04,831 adding 'vermouth/data/mappings/elnedyn/ser.charmm36.map' 2023-07-31T09:44:04,834 adding 'vermouth/data/mappings/elnedyn/thr.charmm36.map' 2023-07-31T09:44:04,836 adding 'vermouth/data/mappings/elnedyn/trp.charmm36.map' 2023-07-31T09:44:04,839 adding 'vermouth/data/mappings/elnedyn/tyr.charmm36.map' 2023-07-31T09:44:04,842 adding 'vermouth/data/mappings/elnedyn/val.charmm36.map' 2023-07-31T09:44:04,846 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,849 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,852 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,854 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,857 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,860 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,862 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,865 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,870 adding 'vermouth/data/mappings/elnedyn21/ala.charmm36.map' 2023-07-31T09:44:04,873 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,875 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.map' 2023-07-31T09:44:04,878 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,881 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.map' 2023-07-31T09:44:04,884 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,886 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.map' 2023-07-31T09:44:04,889 adding 'vermouth/data/mappings/elnedyn21/cys.charmm36.map' 2023-07-31T09:44:04,892 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,894 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.map' 2023-07-31T09:44:04,897 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,900 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.map' 2023-07-31T09:44:04,902 adding 'vermouth/data/mappings/elnedyn21/gly.charmm36.map' 2023-07-31T09:44:04,905 adding 'vermouth/data/mappings/elnedyn21/his.charmm36.map' 2023-07-31T09:44:04,908 adding 'vermouth/data/mappings/elnedyn21/ile.charmm36.map' 2023-07-31T09:44:04,910 adding 'vermouth/data/mappings/elnedyn21/leu.charmm36.map' 2023-07-31T09:44:04,913 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,916 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.map' 2023-07-31T09:44:04,918 adding 'vermouth/data/mappings/elnedyn21/met.charmm36.map' 2023-07-31T09:44:04,921 adding 'vermouth/data/mappings/elnedyn21/modifications.mapping' 2023-07-31T09:44:04,923 adding 'vermouth/data/mappings/elnedyn21/phe.charmm36.map' 2023-07-31T09:44:04,926 adding 'vermouth/data/mappings/elnedyn21/pro.charmm36.map' 2023-07-31T09:44:04,929 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,931 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.map' 2023-07-31T09:44:04,934 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map' 2023-07-31T09:44:04,937 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.map' 2023-07-31T09:44:04,939 adding 'vermouth/data/mappings/elnedyn21/trp.charmm36.map' 2023-07-31T09:44:04,942 adding 'vermouth/data/mappings/elnedyn21/tyr.charmm36.map' 2023-07-31T09:44:04,944 adding 'vermouth/data/mappings/elnedyn21/val.charmm36.map' 2023-07-31T09:44:04,952 adding 'vermouth/data/mappings/martini3001/ala.amber.map' 2023-07-31T09:44:04,955 adding 'vermouth/data/mappings/martini3001/ala.charmm36.map' 2023-07-31T09:44:04,957 adding 'vermouth/data/mappings/martini3001/antr.charmm36.map' 2023-07-31T09:44:04,960 adding 'vermouth/data/mappings/martini3001/arg.amber.map' 2023-07-31T09:44:04,963 adding 'vermouth/data/mappings/martini3001/arg.charmm36.map' 2023-07-31T09:44:04,965 adding 'vermouth/data/mappings/martini3001/ash.amber.map' 2023-07-31T09:44:04,968 adding 'vermouth/data/mappings/martini3001/asn.amber.map' 2023-07-31T09:44:04,970 adding 'vermouth/data/mappings/martini3001/asn.charmm36.map' 2023-07-31T09:44:04,973 adding 'vermouth/data/mappings/martini3001/asp.amber.map' 2023-07-31T09:44:04,976 adding 'vermouth/data/mappings/martini3001/asp.charmm36.map' 2023-07-31T09:44:04,978 adding 'vermouth/data/mappings/martini3001/aspp.charmm36.map' 2023-07-31T09:44:04,981 adding 'vermouth/data/mappings/martini3001/bald.charmm36.map' 2023-07-31T09:44:04,983 adding 'vermouth/data/mappings/martini3001/benz.charmm36.map' 2023-07-31T09:44:04,986 adding 'vermouth/data/mappings/martini3001/c3.charmm36.map' 2023-07-31T09:44:04,988 adding 'vermouth/data/mappings/martini3001/chxe.charmm36.map' 2023-07-31T09:44:04,990 adding 'vermouth/data/mappings/martini3001/cpen.charmm36.map' 2023-07-31T09:44:04,993 adding 'vermouth/data/mappings/martini3001/cume.charmm36.map' 2023-07-31T09:44:04,996 adding 'vermouth/data/mappings/martini3001/cys.amber.map' 2023-07-31T09:44:04,998 adding 'vermouth/data/mappings/martini3001/cys.charmm36.map' 2023-07-31T09:44:05,001 adding 'vermouth/data/mappings/martini3001/diol.charmm36.map' 2023-07-31T09:44:05,003 adding 'vermouth/data/mappings/martini3001/diox.charmm36.map' 2023-07-31T09:44:05,006 adding 'vermouth/data/mappings/martini3001/dman.charmm36.map' 2023-07-31T09:44:05,008 adding 'vermouth/data/mappings/martini3001/eben.charmm36.map' 2023-07-31T09:44:05,010 adding 'vermouth/data/mappings/martini3001/fura.charmm36.map' 2023-07-31T09:44:05,013 adding 'vermouth/data/mappings/martini3001/glh.amber.map' 2023-07-31T09:44:05,016 adding 'vermouth/data/mappings/martini3001/gln.amber.map' 2023-07-31T09:44:05,019 adding 'vermouth/data/mappings/martini3001/gln.charmm36.map' 2023-07-31T09:44:05,021 adding 'vermouth/data/mappings/martini3001/glu.amber.map' 2023-07-31T09:44:05,024 adding 'vermouth/data/mappings/martini3001/glu.charmm36.map' 2023-07-31T09:44:05,027 adding 'vermouth/data/mappings/martini3001/glup.charmm36.map' 2023-07-31T09:44:05,029 adding 'vermouth/data/mappings/martini3001/gly.amber.map' 2023-07-31T09:44:05,032 adding 'vermouth/data/mappings/martini3001/gly.charmm36.map' 2023-07-31T09:44:05,035 adding 'vermouth/data/mappings/martini3001/hid.amber.map' 2023-07-31T09:44:05,037 adding 'vermouth/data/mappings/martini3001/hie.amber.map' 2023-07-31T09:44:05,040 adding 'vermouth/data/mappings/martini3001/hip.amber.map' 2023-07-31T09:44:05,043 adding 'vermouth/data/mappings/martini3001/his.amber.map' 2023-07-31T09:44:05,046 adding 'vermouth/data/mappings/martini3001/his.charmm36.map' 2023-07-31T09:44:05,048 adding 'vermouth/data/mappings/martini3001/hsd.charmm36.map' 2023-07-31T09:44:05,051 adding 'vermouth/data/mappings/martini3001/hse.charmm36.map' 2023-07-31T09:44:05,054 adding 'vermouth/data/mappings/martini3001/hsp.charmm36.map' 2023-07-31T09:44:05,057 adding 'vermouth/data/mappings/martini3001/ile.amber.map' 2023-07-31T09:44:05,059 adding 'vermouth/data/mappings/martini3001/ile.charmm36.map' 2023-07-31T09:44:05,062 adding 'vermouth/data/mappings/martini3001/imia.charmm36.map' 2023-07-31T09:44:05,065 adding 'vermouth/data/mappings/martini3001/inda.charmm36.map' 2023-07-31T09:44:05,067 adding 'vermouth/data/mappings/martini3001/indo.charmm36.map' 2023-07-31T09:44:05,070 adding 'vermouth/data/mappings/martini3001/leu.amber.map' 2023-07-31T09:44:05,073 adding 'vermouth/data/mappings/martini3001/leu.charmm36.map' 2023-07-31T09:44:05,076 adding 'vermouth/data/mappings/martini3001/lsn.charmm36.map' 2023-07-31T09:44:05,078 adding 'vermouth/data/mappings/martini3001/lyn.amber.map' 2023-07-31T09:44:05,081 adding 'vermouth/data/mappings/martini3001/lys.amber.map' 2023-07-31T09:44:05,084 adding 'vermouth/data/mappings/martini3001/lys.charmm36.map' 2023-07-31T09:44:05,086 adding 'vermouth/data/mappings/martini3001/mboa.charmm36.map' 2023-07-31T09:44:05,089 adding 'vermouth/data/mappings/martini3001/mcpe.charmm36.map' 2023-07-31T09:44:05,091 adding 'vermouth/data/mappings/martini3001/meob.charmm36.map' 2023-07-31T09:44:05,094 adding 'vermouth/data/mappings/martini3001/met.amber.map' 2023-07-31T09:44:05,097 adding 'vermouth/data/mappings/martini3001/met.charmm36.map' 2023-07-31T09:44:05,099 adding 'vermouth/data/mappings/martini3001/mind.charmm36.map' 2023-07-31T09:44:05,102 adding 'vermouth/data/mappings/martini3001/modifications.amber.mapping' 2023-07-31T09:44:05,105 adding 'vermouth/data/mappings/martini3001/modifications.charmm36.mapping' 2023-07-31T09:44:05,108 adding 'vermouth/data/mappings/martini3001/mxyl.charmm36.map' 2023-07-31T09:44:05,110 adding 'vermouth/data/mappings/martini3001/naft.charmm36.map' 2023-07-31T09:44:05,113 adding 'vermouth/data/mappings/martini3001/nitb.charmm36.map' 2023-07-31T09:44:05,115 adding 'vermouth/data/mappings/martini3001/oxyl.charmm36.map' 2023-07-31T09:44:05,117 adding 'vermouth/data/mappings/martini3001/pcro.charmm36.map' 2023-07-31T09:44:05,120 adding 'vermouth/data/mappings/martini3001/phe.amber.map' 2023-07-31T09:44:05,123 adding 'vermouth/data/mappings/martini3001/phe.charmm36.map' 2023-07-31T09:44:05,125 adding 'vermouth/data/mappings/martini3001/phen.charmm36.map' 2023-07-31T09:44:05,128 adding 'vermouth/data/mappings/martini3001/phmk.charmm36.map' 2023-07-31T09:44:05,130 adding 'vermouth/data/mappings/martini3001/prld.charmm36.map' 2023-07-31T09:44:05,133 adding 'vermouth/data/mappings/martini3001/pro.amber.map' 2023-07-31T09:44:05,136 adding 'vermouth/data/mappings/martini3001/pro.charmm36.map' 2023-07-31T09:44:05,138 adding 'vermouth/data/mappings/martini3001/pxyl.charmm36.map' 2023-07-31T09:44:05,140 adding 'vermouth/data/mappings/martini3001/pyr1.charmm36.map' 2023-07-31T09:44:05,143 adding 'vermouth/data/mappings/martini3001/pyrd.charmm36.map' 2023-07-31T09:44:05,145 adding 'vermouth/data/mappings/martini3001/pyrl.charmm36.map' 2023-07-31T09:44:05,148 adding 'vermouth/data/mappings/martini3001/pyrm.charmm36.map' 2023-07-31T09:44:05,150 adding 'vermouth/data/mappings/martini3001/qinl.charmm36.map' 2023-07-31T09:44:05,153 adding 'vermouth/data/mappings/martini3001/ser.amber.map' 2023-07-31T09:44:05,155 adding 'vermouth/data/mappings/martini3001/ser.charmm36.map' 2023-07-31T09:44:05,158 adding 'vermouth/data/mappings/martini3001/sm139.charmm36.map' 2023-07-31T09:44:05,160 adding 'vermouth/data/mappings/martini3001/styr.charmm36.map' 2023-07-31T09:44:05,162 adding 'vermouth/data/mappings/martini3001/thaz.charmm36.map' 2023-07-31T09:44:05,165 adding 'vermouth/data/mappings/martini3001/thf.charmm36.map' 2023-07-31T09:44:05,167 adding 'vermouth/data/mappings/martini3001/thip.charmm36.map' 2023-07-31T09:44:05,170 adding 'vermouth/data/mappings/martini3001/thp.charmm36.map' 2023-07-31T09:44:05,172 adding 'vermouth/data/mappings/martini3001/thr.amber.map' 2023-07-31T09:44:05,175 adding 'vermouth/data/mappings/martini3001/thr.charmm36.map' 2023-07-31T09:44:05,178 adding 'vermouth/data/mappings/martini3001/tolu.charmm36.map' 2023-07-31T09:44:05,180 adding 'vermouth/data/mappings/martini3001/trp.amber.map' 2023-07-31T09:44:05,183 adding 'vermouth/data/mappings/martini3001/trp.charmm36.map' 2023-07-31T09:44:05,185 adding 'vermouth/data/mappings/martini3001/tyr.amber.map' 2023-07-31T09:44:05,188 adding 'vermouth/data/mappings/martini3001/tyr.charmm36.map' 2023-07-31T09:44:05,191 adding 'vermouth/data/mappings/martini3001/val.amber.map' 2023-07-31T09:44:05,194 adding 'vermouth/data/mappings/martini3001/val.charmm36.map' 2023-07-31T09:44:05,196 adding 'vermouth/data/mappings/martini3001/zimi.charmm36.map' 2023-07-31T09:44:05,198 adding 'vermouth/data/mappings/martini3001/zthp.charmm36.map' 2023-07-31T09:44:05,201 adding 'vermouth/data/mappings/martini3001/zthz.charmm36.map' 2023-07-31T09:44:05,205 adding 'vermouth/data/mappings/martini30b32/ala.charmm36.map' 2023-07-31T09:44:05,208 adding 'vermouth/data/mappings/martini30b32/arg.charmm36.map' 2023-07-31T09:44:05,211 adding 'vermouth/data/mappings/martini30b32/asn.charmm36.map' 2023-07-31T09:44:05,213 adding 'vermouth/data/mappings/martini30b32/asp.charmm36.map' 2023-07-31T09:44:05,216 adding 'vermouth/data/mappings/martini30b32/benz.charmm36.map' 2023-07-31T09:44:05,218 adding 'vermouth/data/mappings/martini30b32/cys.charmm36.map' 2023-07-31T09:44:05,221 adding 'vermouth/data/mappings/martini30b32/gln.charmm36.map' 2023-07-31T09:44:05,224 adding 'vermouth/data/mappings/martini30b32/glu.charmm36.map' 2023-07-31T09:44:05,226 adding 'vermouth/data/mappings/martini30b32/gly.charmm36.map' 2023-07-31T09:44:05,229 adding 'vermouth/data/mappings/martini30b32/his.charmm36.map' 2023-07-31T09:44:05,232 adding 'vermouth/data/mappings/martini30b32/hsd.charmm36.map' 2023-07-31T09:44:05,234 adding 'vermouth/data/mappings/martini30b32/ile.charmm36.map' 2023-07-31T09:44:05,237 adding 'vermouth/data/mappings/martini30b32/leu.charmm36.map' 2023-07-31T09:44:05,240 adding 'vermouth/data/mappings/martini30b32/lys.charmm36.map' 2023-07-31T09:44:05,243 adding 'vermouth/data/mappings/martini30b32/met.charmm36.map' 2023-07-31T09:44:05,245 adding 'vermouth/data/mappings/martini30b32/modifications.mapping' 2023-07-31T09:44:05,248 adding 'vermouth/data/mappings/martini30b32/phe.charmm36.map' 2023-07-31T09:44:05,250 adding 'vermouth/data/mappings/martini30b32/pro.charmm36.map' 2023-07-31T09:44:05,253 adding 'vermouth/data/mappings/martini30b32/ser.charmm36.map' 2023-07-31T09:44:05,256 adding 'vermouth/data/mappings/martini30b32/thr.charmm36.map' 2023-07-31T09:44:05,259 adding 'vermouth/data/mappings/martini30b32/trp.charmm36.map' 2023-07-31T09:44:05,261 adding 'vermouth/data/mappings/martini30b32/tyr.charmm36.map' 2023-07-31T09:44:05,264 adding 'vermouth/data/mappings/martini30b32/val.charmm36.map' 2023-07-31T09:44:05,268 adding 'vermouth/dssp/__init__.py' 2023-07-31T09:44:05,275 adding 'vermouth/dssp/dssp.py' 2023-07-31T09:44:05,279 adding 'vermouth/gmx/__init__.py' 2023-07-31T09:44:05,283 adding 'vermouth/gmx/gro.py' 2023-07-31T09:44:05,287 adding 'vermouth/gmx/itp.py' 2023-07-31T09:44:05,293 adding 'vermouth/gmx/itp_read.py' 2023-07-31T09:44:05,299 adding 'vermouth/gmx/rtp.py' 2023-07-31T09:44:05,305 adding 'vermouth/graphing/grappa.py' 2023-07-31T09:44:05,309 adding 'vermouth/pdb/__init__.py' 2023-07-31T09:44:05,316 adding 'vermouth/pdb/pdb.py' 2023-07-31T09:44:05,320 adding 'vermouth/processors/__init__.py' 2023-07-31T09:44:05,323 adding 'vermouth/processors/add_molecule_edges.py' 2023-07-31T09:44:05,328 adding 'vermouth/processors/annotate_mut_mod.py' 2023-07-31T09:44:05,330 adding 'vermouth/processors/apply_posres.py' 2023-07-31T09:44:05,336 adding 'vermouth/processors/apply_rubber_band.py' 2023-07-31T09:44:05,340 adding 'vermouth/processors/attach_mass.py' 2023-07-31T09:44:05,343 adding 'vermouth/processors/average_beads.py' 2023-07-31T09:44:05,349 adding 'vermouth/processors/canonicalize_modifications.py' 2023-07-31T09:44:05,354 adding 'vermouth/processors/do_links.py' 2023-07-31T09:44:05,365 adding 'vermouth/processors/do_mapping.py' 2023-07-31T09:44:05,370 adding 'vermouth/processors/go_vs_includes.py' 2023-07-31T09:44:05,372 adding 'vermouth/processors/gro_reader.py' 2023-07-31T09:44:05,376 adding 'vermouth/processors/locate_charge_dummies.py' 2023-07-31T09:44:05,382 adding 'vermouth/processors/make_bonds.py' 2023-07-31T09:44:05,384 adding 'vermouth/processors/merge_all_molecules.py' 2023-07-31T09:44:05,387 adding 'vermouth/processors/merge_chains.py' 2023-07-31T09:44:05,390 adding 'vermouth/processors/name_moltype.py' 2023-07-31T09:44:05,393 adding 'vermouth/processors/pdb_reader.py' 2023-07-31T09:44:05,396 adding 'vermouth/processors/processor.py' 2023-07-31T09:44:05,399 adding 'vermouth/processors/quote.py' 2023-07-31T09:44:05,401 adding 'vermouth/processors/rename_modified_residues.py' 2023-07-31T09:44:05,409 adding 'vermouth/processors/repair_graph.py' 2023-07-31T09:44:05,412 adding 'vermouth/processors/set_molecule_meta.py' 2023-07-31T09:44:05,415 adding 'vermouth/processors/sort_molecule_atoms.py' 2023-07-31T09:44:05,418 adding 'vermouth/processors/tune_cystein_bridges.py' 2023-07-31T09:44:05,423 adding 'vermouth/tests/__init__.py' 2023-07-31T09:44:05,426 adding 'vermouth/tests/datafiles.py' 2023-07-31T09:44:05,428 adding 'vermouth/tests/helper_functions.py' 2023-07-31T09:44:05,432 adding 'vermouth/tests/molecule_strategies.py' 2023-07-31T09:44:05,435 adding 'vermouth/tests/test_add_molecule_edges.py' 2023-07-31T09:44:05,439 adding 'vermouth/tests/test_annotate_mut_mod.py' 2023-07-31T09:44:05,444 adding 'vermouth/tests/test_apply_rubber_band.py' 2023-07-31T09:44:05,447 adding 'vermouth/tests/test_average_beads.py' 2023-07-31T09:44:05,453 adding 'vermouth/tests/test_do_mapping.py' 2023-07-31T09:44:05,459 adding 'vermouth/tests/test_dssp.py' 2023-07-31T09:44:05,465 adding 'vermouth/tests/test_edge_tuning.py' 2023-07-31T09:44:05,474 adding 'vermouth/tests/test_ff_files.py' 2023-07-31T09:44:05,481 adding 'vermouth/tests/test_ffinput.py' 2023-07-31T09:44:05,484 adding 'vermouth/tests/test_file_writer.py' 2023-07-31T09:44:05,488 adding 'vermouth/tests/test_forcefield.py' 2023-07-31T09:44:05,491 adding 'vermouth/tests/test_geometry.py' 2023-07-31T09:44:05,494 adding 'vermouth/tests/test_go_vs_includes.py' 2023-07-31T09:44:05,498 adding 'vermouth/tests/test_graph_utils.py' 2023-07-31T09:44:05,503 adding 'vermouth/tests/test_grappa.py' 2023-07-31T09:44:05,508 adding 'vermouth/tests/test_ismags.py' 2023-07-31T09:44:05,513 adding 'vermouth/tests/test_itp_files.py' 2023-07-31T09:44:05,517 adding 'vermouth/tests/test_links.py' 2023-07-31T09:44:05,522 adding 'vermouth/tests/test_logging.py' 2023-07-31T09:44:05,525 adding 'vermouth/tests/test_make_bonds.py' 2023-07-31T09:44:05,531 adding 'vermouth/tests/test_map_input.py' 2023-07-31T09:44:05,536 adding 'vermouth/tests/test_map_parser.py' 2023-07-31T09:44:05,540 adding 'vermouth/tests/test_mapping_integrative.py' 2023-07-31T09:44:05,548 adding 'vermouth/tests/test_molecule.py' 2023-07-31T09:44:05,553 adding 'vermouth/tests/test_name_moltype.py' 2023-07-31T09:44:05,556 adding 'vermouth/tests/test_native_forcefield.py' 2023-07-31T09:44:05,559 adding 'vermouth/tests/test_ptm_detection.py' 2023-07-31T09:44:05,564 adding 'vermouth/tests/test_repair_graph.py' 2023-07-31T09:44:05,567 adding 'vermouth/tests/test_section_parser.py' 2023-07-31T09:44:05,570 adding 'vermouth/tests/test_selectors.py' 2023-07-31T09:44:05,573 adding 'vermouth/tests/test_set_molecule_meta.py' 2023-07-31T09:44:05,576 adding 'vermouth/tests/test_sort_molecule_atoms.py' 2023-07-31T09:44:05,580 adding 'vermouth/tests/test_tune_cystein_bridges.py' 2023-07-31T09:44:05,584 adding 'vermouth/tests/test_utils.py' 2023-07-31T09:44:05,587 adding 'vermouth/tests/test_version.py' 2023-07-31T09:44:05,642 adding 'vermouth/tests/data/1bta.pdb' 2023-07-31T09:44:05,698 adding 'vermouth/tests/data/1bta_mutated.pdb' 2023-07-31T09:44:05,864 adding 'vermouth/tests/data/2QWO.pdb' 2023-07-31T09:44:06,225 adding 'vermouth/tests/data/2dn2.pdb' 2023-07-31T09:44:07,571 adding 'vermouth/tests/data/6E8W.pdb' 2023-07-31T09:44:07,640 adding 'vermouth/tests/data/ala5.pdb' 2023-07-31T09:44:07,643 adding 'vermouth/tests/data/ala5_cg.pdb' 2023-07-31T09:44:07,648 adding 'vermouth/tests/data/dna-short.pdb' 2023-07-31T09:44:07,651 adding 'vermouth/tests/data/heme.pdb' 2023-07-31T09:44:07,654 adding 'vermouth/tests/data/tri_alanine.pdb' 2023-07-31T09:44:07,663 adding 'vermouth/tests/data/dssp_tests/dssp_1bta.ssd' 2023-07-31T09:44:07,667 adding 'vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v2.2.1-3b2-deb_cv1.ssd' 2023-07-31T09:44:07,672 adding 'vermouth/tests/data/dssp_tests/mini-protein1_betasheet.pdb.v3.0.0-3b1-deb_cv1.ssd' 2023-07-31T09:44:07,677 adding 'vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v2.2.1-3b2-deb_cv1.ssd' 2023-07-31T09:44:07,681 adding 'vermouth/tests/data/dssp_tests/mini-protein2_helix.pdb.v3.0.0-3b1-deb_cv1.ssd' 2023-07-31T09:44:07,685 adding 'vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v2.2.1-3b2-deb_cv1.ssd' 2023-07-31T09:44:07,689 adding 'vermouth/tests/data/dssp_tests/mini-protein3_trp-cage.pdb.v3.0.0-3b1-deb_cv1.ssd' 2023-07-31T09:44:07,697 adding 'vermouth/tests/data/force_fields/martini-test/aminoacids.ff' 2023-07-31T09:44:07,702 adding 'vermouth/tests/data/force_fields/pepplane/ala.ff' 2023-07-31T09:44:07,705 adding 'vermouth/tests/data/force_fields/pepplane/general.ff' 2023-07-31T09:44:07,707 adding 'vermouth/tests/data/force_fields/pepplane/modifications.ff' 2023-07-31T09:44:07,716 adding 'vermouth/tests/data/force_fields/universal-test/aminoacids.rtp' 2023-07-31T09:44:07,719 adding 'vermouth/tests/data/force_fields/universal-test/modifications.ff' 2023-07-31T09:44:07,725 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/README' 2023-07-31T09:44:07,728 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb' 2023-07-31T09:44:07,732 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb' 2023-07-31T09:44:07,735 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation' 2023-07-31T09:44:07,737 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command' 2023-07-31T09:44:07,740 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp' 2023-07-31T09:44:07,743 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top' 2023-07-31T09:44:07,746 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README' 2023-07-31T09:44:07,759 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb' 2023-07-31T09:44:07,765 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb' 2023-07-31T09:44:07,770 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd' 2023-07-31T09:44:07,773 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation' 2023-07-31T09:44:07,775 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command' 2023-07-31T09:44:07,779 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp' 2023-07-31T09:44:07,781 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output' 2023-07-31T09:44:07,784 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top' 2023-07-31T09:44:07,787 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README' 2023-07-31T09:44:07,809 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb' 2023-07-31T09:44:07,815 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb' 2023-07-31T09:44:07,820 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd' 2023-07-31T09:44:07,823 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation' 2023-07-31T09:44:07,825 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command' 2023-07-31T09:44:07,830 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp' 2023-07-31T09:44:07,833 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output' 2023-07-31T09:44:07,836 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top' 2023-07-31T09:44:07,839 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README' 2023-07-31T09:44:07,848 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb' 2023-07-31T09:44:07,853 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb' 2023-07-31T09:44:07,857 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd' 2023-07-31T09:44:07,860 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation' 2023-07-31T09:44:07,862 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command' 2023-07-31T09:44:07,866 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp' 2023-07-31T09:44:07,868 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output' 2023-07-31T09:44:07,871 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top' 2023-07-31T09:44:07,876 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/README' 2023-07-31T09:44:08,035 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb' 2023-07-31T09:44:08,068 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb' 2023-07-31T09:44:08,072 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top' 2023-07-31T09:44:08,097 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd' 2023-07-31T09:44:08,100 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation' 2023-07-31T09:44:08,103 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command' 2023-07-31T09:44:08,152 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp' 2023-07-31T09:44:08,158 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output' 2023-07-31T09:44:08,162 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README' 2023-07-31T09:44:08,320 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb' 2023-07-31T09:44:08,352 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb' 2023-07-31T09:44:08,356 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top' 2023-07-31T09:44:08,381 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd' 2023-07-31T09:44:08,385 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation' 2023-07-31T09:44:08,387 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command' 2023-07-31T09:44:08,437 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp' 2023-07-31T09:44:08,442 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output' 2023-07-31T09:44:08,465 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb' 2023-07-31T09:44:08,469 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/README' 2023-07-31T09:44:08,475 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb' 2023-07-31T09:44:08,478 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top' 2023-07-31T09:44:08,483 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd' 2023-07-31T09:44:08,489 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd' 2023-07-31T09:44:08,491 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation' 2023-07-31T09:44:08,494 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command' 2023-07-31T09:44:08,501 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp' 2023-07-31T09:44:08,508 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp' 2023-07-31T09:44:08,512 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output' 2023-07-31T09:44:08,583 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb' 2023-07-31T09:44:08,588 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README' 2023-07-31T09:44:08,609 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb' 2023-07-31T09:44:08,613 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top' 2023-07-31T09:44:08,618 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd' 2023-07-31T09:44:08,621 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation' 2023-07-31T09:44:08,623 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command' 2023-07-31T09:44:08,663 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp' 2023-07-31T09:44:08,669 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output' 2023-07-31T09:44:08,673 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/README' 2023-07-31T09:44:08,694 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb' 2023-07-31T09:44:08,701 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb' 2023-07-31T09:44:08,704 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top' 2023-07-31T09:44:08,709 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd' 2023-07-31T09:44:08,712 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation' 2023-07-31T09:44:08,715 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command' 2023-07-31T09:44:08,722 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp' 2023-07-31T09:44:08,726 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output' 2023-07-31T09:44:08,729 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/README' 2023-07-31T09:44:08,751 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb' 2023-07-31T09:44:08,758 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb' 2023-07-31T09:44:08,761 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top' 2023-07-31T09:44:08,766 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd' 2023-07-31T09:44:08,769 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation' 2023-07-31T09:44:08,772 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command' 2023-07-31T09:44:08,779 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp' 2023-07-31T09:44:08,782 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output' 2023-07-31T09:44:08,786 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/README' 2023-07-31T09:44:08,810 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb' 2023-07-31T09:44:08,818 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb' 2023-07-31T09:44:08,824 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd' 2023-07-31T09:44:08,827 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation' 2023-07-31T09:44:08,829 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command' 2023-07-31T09:44:08,837 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp' 2023-07-31T09:44:08,842 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output' 2023-07-31T09:44:08,845 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top' 2023-07-31T09:44:08,849 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/README' 2023-07-31T09:44:08,898 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb' 2023-07-31T09:44:08,912 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb' 2023-07-31T09:44:08,923 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd' 2023-07-31T09:44:08,926 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation' 2023-07-31T09:44:08,928 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command' 2023-07-31T09:44:08,947 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp' 2023-07-31T09:44:08,953 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output' 2023-07-31T09:44:08,972 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp' 2023-07-31T09:44:08,976 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top' 2023-07-31T09:44:08,980 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README' 2023-07-31T09:44:09,029 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb' 2023-07-31T09:44:09,042 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/cg.pdb' 2023-07-31T09:44:09,053 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/chain_A.ssd' 2023-07-31T09:44:09,074 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/molecule_0.itp' 2023-07-31T09:44:09,078 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/topol.top' 2023-07-31T09:44:09,090 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb' 2023-07-31T09:44:09,101 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd' 2023-07-31T09:44:09,104 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation' 2023-07-31T09:44:09,106 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command' 2023-07-31T09:44:09,127 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp' 2023-07-31T09:44:09,131 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output' 2023-07-31T09:44:09,149 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp' 2023-07-31T09:44:09,153 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top' 2023-07-31T09:44:09,156 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/README' 2023-07-31T09:44:09,213 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/input.pdb' 2023-07-31T09:44:09,228 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.pdb' 2023-07-31T09:44:09,231 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/cg.top' 2023-07-31T09:44:09,242 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/chain_.ssd' 2023-07-31T09:44:09,245 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/citation' 2023-07-31T09:44:09,247 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/command' 2023-07-31T09:44:09,268 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/molecule_0.itp' 2023-07-31T09:44:09,272 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/screen.output' 2023-07-31T09:44:09,275 adding 'vermouth/tests/data/integration_tests/tier-1/prot_modf_charmm/martinize2/sys.top' 2023-07-31T09:44:09,278 adding 'vermouth/tests/data/integration_tests/tier-1/villin/README' 2023-07-31T09:44:09,288 adding 'vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb' 2023-07-31T09:44:09,294 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb' 2023-07-31T09:44:09,297 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation' 2023-07-31T09:44:09,299 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command' 2023-07-31T09:44:09,304 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp' 2023-07-31T09:44:09,306 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output' 2023-07-31T09:44:09,309 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top' 2023-07-31T09:44:09,314 adding 'vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping' 2023-07-31T09:44:09,318 adding 'vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping' 2023-07-31T09:44:09,320 adding 'vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping' 2023-07-31T09:44:09,327 adding 'vermouth/tests/gmx/test_gro.py' 2023-07-31T09:44:09,331 adding 'vermouth/tests/gmx/test_itp.py' 2023-07-31T09:44:09,335 adding 'vermouth/tests/integration_tests/__init__.py' 2023-07-31T09:44:09,339 adding 'vermouth/tests/integration_tests/test_integration.py' 2023-07-31T09:44:09,344 adding 'vermouth/tests/pdb/test_read_pdb.py' 2023-07-31T09:44:09,347 adding 'vermouth/tests/pdb/test_write_pdb.py' 2023-07-31T09:44:09,361 adding 'vermouth-0.9.3.data/scripts/martinize2' 2023-07-31T09:44:09,369 adding 'vermouth-0.9.3.dist-info/LICENSE' 2023-07-31T09:44:09,372 adding 'vermouth-0.9.3.dist-info/METADATA' 2023-07-31T09:44:09,374 adding 'vermouth-0.9.3.dist-info/WHEEL' 2023-07-31T09:44:09,376 adding 'vermouth-0.9.3.dist-info/pbr.json' 2023-07-31T09:44:09,378 adding 'vermouth-0.9.3.dist-info/top_level.txt' 2023-07-31T09:44:09,402 adding 'vermouth-0.9.3.dist-info/RECORD' 2023-07-31T09:44:09,518 removing build/bdist.linux-armv7l/wheel 2023-07-31T09:44:09,836 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.tests.data.mappings' is absent from the `packages` configuration. 2023-07-31T09:44:09,836 !! 2023-07-31T09:44:09,837 ******************************************************************************** 2023-07-31T09:44:09,837 ############################ 2023-07-31T09:44:09,837 # Package would be ignored # 2023-07-31T09:44:09,838 ############################ 2023-07-31T09:44:09,838 Python recognizes 'vermouth.tests.data.mappings' as an importable package[^1], 2023-07-31T09:44:09,838 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:44:09,839 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:44:09,839 package, please make sure that 'vermouth.tests.data.mappings' is explicitly added 2023-07-31T09:44:09,840 to the `packages` configuration field. 2023-07-31T09:44:09,840 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:44:09,840 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:44:09,841 instead of `find_packages(...)`/`find:`). 2023-07-31T09:44:09,843 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:44:09,844 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:44:09,844 If you don't want 'vermouth.tests.data.mappings' to be distributed and are 2023-07-31T09:44:09,844 already explicitly excluding 'vermouth.tests.data.mappings' via 2023-07-31T09:44:09,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:44:09,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:44:09,845 combination with a more fine grained `package-data` configuration. 2023-07-31T09:44:09,846 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:44:09,847 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:44:09,848 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:44:09,848 even if it does not contain any `.py` files. 2023-07-31T09:44:09,848 On the other hand, currently there is no concept of package data 2023-07-31T09:44:09,849 directory, all directories are treated like packages. 2023-07-31T09:44:09,849 ******************************************************************************** 2023-07-31T09:44:09,849 !! 2023-07-31T09:44:09,850 check.warn(importable) 2023-07-31T09:44:09,850 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.tests.gmx' is absent from the `packages` configuration. 2023-07-31T09:44:09,851 !! 2023-07-31T09:44:09,852 ******************************************************************************** 2023-07-31T09:44:09,852 ############################ 2023-07-31T09:44:09,853 # Package would be ignored # 2023-07-31T09:44:09,853 ############################ 2023-07-31T09:44:09,854 Python recognizes 'vermouth.tests.gmx' as an importable package[^1], 2023-07-31T09:44:09,854 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:44:09,855 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:44:09,855 package, please make sure that 'vermouth.tests.gmx' is explicitly added 2023-07-31T09:44:09,856 to the `packages` configuration field. 2023-07-31T09:44:09,857 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:44:09,857 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:44:09,858 instead of `find_packages(...)`/`find:`). 2023-07-31T09:44:09,858 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:44:09,859 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:44:09,860 If you don't want 'vermouth.tests.gmx' to be distributed and are 2023-07-31T09:44:09,861 already explicitly excluding 'vermouth.tests.gmx' via 2023-07-31T09:44:09,861 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:44:09,861 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:44:09,862 combination with a more fine grained `package-data` configuration. 2023-07-31T09:44:09,863 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:44:09,863 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:44:09,865 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:44:09,865 even if it does not contain any `.py` files. 2023-07-31T09:44:09,865 On the other hand, currently there is no concept of package data 2023-07-31T09:44:09,866 directory, all directories are treated like packages. 2023-07-31T09:44:09,866 ******************************************************************************** 2023-07-31T09:44:09,867 !! 2023-07-31T09:44:09,867 check.warn(importable) 2023-07-31T09:44:09,868 /tmp/pip-build-env-619n17x7/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'vermouth.tests.pdb' is absent from the `packages` configuration. 2023-07-31T09:44:09,868 !! 2023-07-31T09:44:09,869 ******************************************************************************** 2023-07-31T09:44:09,869 ############################ 2023-07-31T09:44:09,870 # Package would be ignored # 2023-07-31T09:44:09,870 ############################ 2023-07-31T09:44:09,871 Python recognizes 'vermouth.tests.pdb' as an importable package[^1], 2023-07-31T09:44:09,871 but it is absent from setuptools' `packages` configuration. 2023-07-31T09:44:09,872 This leads to an ambiguous overall configuration. If you want to distribute this 2023-07-31T09:44:09,872 package, please make sure that 'vermouth.tests.pdb' is explicitly added 2023-07-31T09:44:09,873 to the `packages` configuration field. 2023-07-31T09:44:09,874 Alternatively, you can also rely on setuptools' discovery methods 2023-07-31T09:44:09,874 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-07-31T09:44:09,875 instead of `find_packages(...)`/`find:`). 2023-07-31T09:44:09,876 You can read more about "package discovery" on setuptools documentation page: 2023-07-31T09:44:09,877 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-07-31T09:44:09,877 If you don't want 'vermouth.tests.pdb' to be distributed and are 2023-07-31T09:44:09,878 already explicitly excluding 'vermouth.tests.pdb' via 2023-07-31T09:44:09,878 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-07-31T09:44:09,879 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-07-31T09:44:09,879 combination with a more fine grained `package-data` configuration. 2023-07-31T09:44:09,880 You can read more about "package data files" on setuptools documentation page: 2023-07-31T09:44:09,880 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-07-31T09:44:09,882 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-07-31T09:44:09,883 even if it does not contain any `.py` files. 2023-07-31T09:44:09,883 On the other hand, currently there is no concept of package data 2023-07-31T09:44:09,883 directory, all directories are treated like packages. 2023-07-31T09:44:09,884 ******************************************************************************** 2023-07-31T09:44:09,885 !! 2023-07-31T09:44:09,885 check.warn(importable) 2023-07-31T09:44:10,035 Building wheel for vermouth (pyproject.toml): finished with status 'done' 2023-07-31T09:44:10,198 Created wheel for vermouth: filename=vermouth-0.9.3-py2.py3-none-any.whl size=2766951 sha256=28c579c2c0792f6e9e78f0ab16f165a1c83a2d5e1e4db5b46b528a9f13127af7 2023-07-31T09:44:10,200 Stored in directory: /tmp/pip-ephem-wheel-cache-m8t15map/wheels/bf/d1/9a/ff8639637b65d63201cc43e08646bf53923682d86aee673cd4 2023-07-31T09:44:10,276 Successfully built vermouth 2023-07-31T09:44:10,470 Removed build tracker: '/tmp/pip-build-tracker-q1950aya'