2023-08-04T11:39:17,738 Created temporary directory: /tmp/pip-build-tracker-sk0btm8_ 2023-08-04T11:39:17,741 Initialized build tracking at /tmp/pip-build-tracker-sk0btm8_ 2023-08-04T11:39:17,742 Created build tracker: /tmp/pip-build-tracker-sk0btm8_ 2023-08-04T11:39:17,742 Entered build tracker: /tmp/pip-build-tracker-sk0btm8_ 2023-08-04T11:39:17,743 Created temporary directory: /tmp/pip-wheel-ubnl31c8 2023-08-04T11:39:17,752 Created temporary directory: /tmp/pip-ephem-wheel-cache-d6yphn67 2023-08-04T11:39:17,811 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-04T11:39:17,819 2 location(s) to search for versions of pyhmmer: 2023-08-04T11:39:17,819 * https://pypi.org/simple/pyhmmer/ 2023-08-04T11:39:17,819 * https://www.piwheels.org/simple/pyhmmer/ 2023-08-04T11:39:17,820 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2023-08-04T11:39:17,821 Getting page https://pypi.org/simple/pyhmmer/ 2023-08-04T11:39:17,826 Found index url https://pypi.org/simple/ 2023-08-04T11:39:17,970 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2023-08-04T11:39:18,296 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/24/b9adc93653b83e3aa333588f8fe80cf6a058b97497a1a722e7a2cf5bc5b3/pyhmmer-0.1.0a1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,297 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/5a/594c4415860394f14b94137e10f3b6264fbd452a9ed00371fef870bdd68e/pyhmmer-0.1.0a1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,298 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/fe/4cf2fc8c5eb288fc72cbbc151d6da1b6f6e73fcba66842ed40532069902d/pyhmmer-0.1.0a1-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,298 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/c9/3f46d702c63e188539c28555af361e58ead4bff416799042c5ecf97805cb/pyhmmer-0.1.0a1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,299 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/12/f5d1ef8114cc5e0ab890d562768e9a6eb253b3e3bf258f8105c1d1841c73/pyhmmer-0.1.0a1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,299 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/b6/b92f44fcc712bc3dd621eccefe34d569a17f0ae73133f352a47fb2029c44/pyhmmer-0.1.0a1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,300 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/b6/0ca49ee6803d761eefc93528e9e8106151e06acf77ba9f669275c01863ac/pyhmmer-0.1.0a1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,300 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/0d/e2e21b3925af6887baf35a3e8993b5fe4863d93638138e7d5f236bcf2197/pyhmmer-0.1.0a1-cp38-cp38-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,301 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/3d/aac55b3f74ecd81ff3f619083c277ba40df45d8e6b8fc19d58eb74fab09b/pyhmmer-0.1.0a1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,301 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/cc/11cb714fad98ed3c1689ce83a31a29d744ed34c822af3ae63b2450e6b159/pyhmmer-0.1.0a1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,302 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/39/ca6e515c639a28632e52579a75aabe22d6bf2fe2a66cb2bd407fea81a1fe/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,302 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:39:18,303 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2023-08-04T11:39:18,304 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,304 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/a8/b31471655d0f09813748c9d8888587e3a1e1573f0c01c748676d03cc3c51/pyhmmer-0.1.0a2-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,305 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/1f/4b3aef73b2a9d4e07d56700a1a11794e6c92dd9018c1008b53e6c0e903ca/pyhmmer-0.1.0a2-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,305 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/83/a386d9e2350ec96fe9d0c6d8c274c72afda82745e5586926966b0c8e678f/pyhmmer-0.1.0a2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,306 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,306 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,307 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,307 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,308 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,308 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,309 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,309 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,310 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,311 Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2 2023-08-04T11:39:18,312 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,313 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,313 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ac/a6/5d0240be2817e6b3c876493903fdf300a05a4d27ab4ce3e71a86bb4e6e47/pyhmmer-0.1.0a3-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,314 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,314 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,315 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,315 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,316 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,316 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/67/4cb6f3ff89e47e060598f940d771799fdd7b1427544cd8da94ce895e9e4f/pyhmmer-0.1.0a3-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,317 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/61/e5f4b60a3ea29110b78672a95dac9bc165727c96732e34868f249e3422e1/pyhmmer-0.1.0a3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,317 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/37/df/8c9ccb8baeec522b05e956beaf899596ada02a3b383dc7a8d259b69e825b/pyhmmer-0.1.0a3-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,318 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/78/7cd9016de0f1aa1ee2da0200224cb886959e62cb97c933553cdc7fd2560f/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,318 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,319 Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3 2023-08-04T11:39:18,320 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl 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binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/90/3f2cc3b8d0d2400b4cb21655f124b1704f0b71b05a0680f6671b19ec566c/pyhmmer-0.1.0a4-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,323 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/bc625da5fac25a825470749a1a0465f15cceb4c702cb9efd8b69e76de5e7/pyhmmer-0.1.0a4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,323 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4c/35/22c6cb71edfcb82ef9d649d3adb11574f1f1ec930491242295c3916e7572/pyhmmer-0.1.0a4-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,324 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/c7/3366cd7f01c8a50a9952c1d876141630de3d6b68d4bd2067b17b121921af/pyhmmer-0.1.0a4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,324 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/96/ab/547d16b731200d26c3295f6ae6192d6d6115d613dd3787ea0f8978478bde/pyhmmer-0.1.0a4-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,325 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/73/e4/2e4a8bc0edf07188d51fcd3b1ff17cce3efa831f76e6e16b84df1cfd3cde/pyhmmer-0.1.0a4-cp39-cp39-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:39:18,325 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/59/6f/1bb9034ca6c811c37dcf4eb0f9304e4d575cd4855be7da0c51cad30c117d/pyhmmer-0.3.0-pp36-pypy36_pp73-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,397 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/84/801ca5f828500d3825b066c8006d6b501d67d57d43f1c8d95c62fb72ed21/pyhmmer-0.3.0-pp36-pypy36_pp73-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,397 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/40/bd/c936e6aaa290135fadb7a240036567ea730c38646692ed5a161094168db7/pyhmmer-0.3.0-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,398 Skipping link: No binaries permitted for pyhmmer: 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pyhmmer: https://files.pythonhosted.org/packages/74/ba/2071d1002491f10b45fe057f8707b7f879546443a18ed0acb9a9486d3033/pyhmmer-0.3.1-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,404 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e3/1c/ac254f0a00b9739d4587df65f030cd15783f57feb996470cd4664e24e8b2/pyhmmer-0.3.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,405 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/fb/d87f9c26a4b58ea330e7936c4f59f0d8ecfdbc1e76aed60eaf5dd29f04ba/pyhmmer-0.3.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,405 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9b/00/3a84465ed08c531aa7fafc575f16840c94a75bba9ab4cd2b46e906f0431e/pyhmmer-0.3.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.3.1 2023-08-04T11:39:18,408 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/19/9d179de61801cf015e36b58915320bc456482b86001c9e5de25cf56f7e69/pyhmmer-0.4.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,409 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/05/7fb226eb9c2131dd60bd56f0077e006a4e51da51272d92163b62ca4f8eea/pyhmmer-0.4.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,409 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4a/3d/aa40c222382ac833fdfa24f9bc443dd5bfc0e0ec44ad401a6df701beb555/pyhmmer-0.4.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,415 Found link https://files.pythonhosted.org/packages/b8/54/9ebe75c4056daa0c0eb9f2b11fe62361d3a8b5e54818a528d8ca509e8986/pyhmmer-0.4.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.0 2023-08-04T11:39:18,416 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2a/f4/575177c27da35c5052bc8cfc63454f7af5b948e89f3d9350cb061c3fd679/pyhmmer-0.4.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,416 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a9/bd/08e876d81d61cd14279d7cc453060e38df9c59282b389c2789bd7742813b/pyhmmer-0.4.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,420 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/84/f5/5f83239790be66db9ea89781295020172d20ccc6d1262f4064dc2c1170cb/pyhmmer-0.4.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,421 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/35/55/bd514b80616381411b763ae1a275d384bb2261abc06f8b32e95dedf7aa37/pyhmmer-0.4.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,421 Skipping link: No binaries 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https://files.pythonhosted.org/packages/ba/48/a36c888751b3dd9eb63c3c1c5ed163a6d154ae00f77d18a044e3fac082d0/pyhmmer-0.4.2-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,424 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c3/5a/8a0de4d3424898a336c5c6c1d9d1de7cc9e09ec0ce0936b04e309c71b66f/pyhmmer-0.4.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,425 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cb/12/1567eade5703ae7153f55256d5f0a404a77a5d40b286e7a20379f5d96d60/pyhmmer-0.4.2-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,425 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/aa/09b2d512f1b75ed279317eba38e320204f0cfa49094f83211aede16286ce/pyhmmer-0.4.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,426 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/21/3a09a81de850eb81ab720eb05bb1d1362070b1cbbc6a6b7b1edf701920d4/pyhmmer-0.4.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,426 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/43/19411901fe99dd7038ebb98fabd2b79062b2944bec551d0b06bd9909adc4/pyhmmer-0.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,427 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9c/5e/212fe49995ccad358150012abf2da8ffbc25f024436b6fdcc89173e95b32/pyhmmer-0.4.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,429 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/9e/486d5da6d404842d00eabfbb1d7a25ffc0c49503dd7d267f1a6a701840e5/pyhmmer-0.4.2-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,429 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/88/b8bb0c20875f4638bb7d600c4c3dc65eb742b3a9833c730aa4915e94aa9a/pyhmmer-0.4.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,431 Found link https://files.pythonhosted.org/packages/2f/93/fa15885ede25f87ac2fa5e2cef12831bb8747b7e8455982ca2942ba61c7b/pyhmmer-0.4.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.2 2023-08-04T11:39:18,431 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/da/5e42fc076686aab8588bafb9d3e5c97a6c8bb4b24060eb943836c303cf11/pyhmmer-0.4.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,432 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/50/caff34277134400d58687859f224f34e88a6aa7abc6b3371150c3997f7a1/pyhmmer-0.4.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,432 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/43/726fc37dd0ece9c81780c9e29b90be4493693f4c6e8edde68b3cf8189125/pyhmmer-0.4.3-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,433 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bf/5f/6a88535a37b4de01584d62e008fb415adbe3f1440950dabba648943aa3c1/pyhmmer-0.4.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,433 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/6c/ec2ff99e8dc22520805ecf43ff22369a1ca0228cbd6fabfc3de0d7695481/pyhmmer-0.4.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,434 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/9a/8df126ab5ccf2278e9b3414c26f53bf01b480164abcc11c9d2d56d9f67f4/pyhmmer-0.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,434 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2d/63/9e0ac76ca6baae6f288983a7af56de078773b5c0d61004419d1319197f61/pyhmmer-0.4.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,435 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/30/05d945cce1855035b4bb78996bac7ce0e371e2dc82b186147e36d551e1d0/pyhmmer-0.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,435 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/94/cacfb35c7ee944e9b9dac2ba8ef20cc192958cdbf1e4e223783152251a7b/pyhmmer-0.4.3-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,436 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/ba/e2347228e6bc83d22820f46bf33ed8558ce1128a60128edd2b9bd770078e/pyhmmer-0.4.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,436 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/9a/d5447b14a91a994bd2ec38a1a4880c29c93bce74e1aa7a328a794901a870/pyhmmer-0.4.3-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,437 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/eb/87/8074c4e8896b87ef161b2490f525315f70c4783e567cfc15679bdab1f059/pyhmmer-0.4.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,438 Found link https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2023-08-04T11:39:18,439 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,440 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/11/86/9beee426a65a90eca53de4f3b0116b562bcbcf6eadf403ec83ae1b312a13/pyhmmer-0.4.5-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,452 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3b/2d/e2a6dddd83bb0e389b0fc62449badff092ac664046c82ed718b5102b08f4/pyhmmer-0.4.5-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,453 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/9e/c179587a659325aa519390efba2fe7775178a111888fe32ba0978fd91205/pyhmmer-0.4.5-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,454 Found link https://files.pythonhosted.org/packages/c3/4c/926f71ac0913fbe2426f5f3ac8071edb4e700591b690c4acbaa7b559fb38/pyhmmer-0.4.5.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.5 2023-08-04T11:39:18,455 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/af/85534ee68bcdcb07d92d7630536659edaf435f0e7f8784189c53af637228/pyhmmer-0.4.6-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,455 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/03/d3/691d493cfc4d37f8f099ec52179d86fffaed4c9e3a6b9d76f6a3b5cf0e27/pyhmmer-0.4.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,456 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/f0/343198b3cebda51800efd71bc6001f5754a69c364da0f5571a5c4e91965d/pyhmmer-0.4.6-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,456 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,457 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,457 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,458 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/57/9941d06a569a34685928406e5b5d47819417a2379a26233437ca53a3484e/pyhmmer-0.4.6-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,458 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/87/171796b7139a8a44ba960344487f474d65bb5f16c21a088bede3d3cdec33/pyhmmer-0.4.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,459 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/b0/5d0f1b002f50fc531485e8691224de277d329d293bde922a35f4659e73b8/pyhmmer-0.4.6-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,459 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,460 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,460 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,462 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2023-08-04T11:39:18,463 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,463 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fc/d9b9efcc7b21381a3fa0c4b83e083c9d0b406868846054b989d105c301c8/pyhmmer-0.4.7-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,464 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d8/6f/d70ebea12581688dbcf180b983186e3d3a8ad2325cc8691c837276bb3e67/pyhmmer-0.4.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,465 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/95/57/b2ed0c64308941872e2535eceeafb737b4871e507d54b5d68b6ffc02f8cd/pyhmmer-0.4.8-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,475 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/40/22/099da301d77a3f512bde56a54fa5272e937818843f8be96aa46089071f4f/pyhmmer-0.4.8-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,476 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/76/477e37aee671104bb5d1022eb0ff641ce700d639a36961694ba9710af8b9/pyhmmer-0.4.8-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,477 Found link https://files.pythonhosted.org/packages/5a/91/1166980fd7eb5106ef2f34ede5ae0043daf2f276f05b0e9f93cc2d968827/pyhmmer-0.4.8.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.8 2023-08-04T11:39:18,478 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,478 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,479 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,479 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/07/442980e0fc7b4d336157fd80d843b3ad0b71709087b0daf910f2beee93cd/pyhmmer-0.4.9-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,480 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/41/f5b4ffcedcf3116573ff5740de4877723f0d69b7527ece4a794069de2235/pyhmmer-0.4.9-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,480 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/78/a6/d21ba62d70e38f7b3829c69be9179cea416599a8ee952c8f4ac5503bfd04/pyhmmer-0.4.9-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,481 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/53/6428ce4322f6af35747f3f7c3829ebaeb05bab2eae6d5ff39c46cb1455e2/pyhmmer-0.4.9-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,481 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/b0/8daba4b0c9507fac1725a9005e88e8560b66e15d1d29a422980ae2caf987/pyhmmer-0.4.9-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,482 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/de/1d/76c728871c542de627e56683ecd2768bad8019744f575bdfe037fbf7889a/pyhmmer-0.4.9-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,482 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,483 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,484 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,485 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2023-08-04T11:39:18,486 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,486 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,487 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/ac/2db59c94139155e1241fabf650a8f30b238a68d13ca40014a75aece65b74/pyhmmer-0.4.10-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,487 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/06/ad/aaeafd77e0037312873a136a3c2165a5eab10ae37f56cb60b8c6de7442b4/pyhmmer-0.4.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,488 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/87/24601e2b81fedba09b3a003fd1e4fe78c8cd252767663acd9dbc63d1784d/pyhmmer-0.4.10-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,488 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,489 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,489 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,490 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,490 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,491 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,492 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2023-08-04T11:39:18,493 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,494 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,494 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/76/0ae3492a40179ac43d453b37b8a3d19bd58c3ca762013eca94aeb9592873/pyhmmer-0.4.11-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,495 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b4/dd/1f02cbf6cda0a82564cab00b63fba1904fc98be1db7c09e8eb2084b322d6/pyhmmer-0.4.11-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,495 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a0/87/c0e6ce633d6649cae526c23260219fb911e2c3da891eb2485a5b6b8e6cb7/pyhmmer-0.4.11-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,499 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/d7/a415042ae43b7a13fbcd1a3295a8b8189029e7baeede92ab82ce597db36e/pyhmmer-0.4.11-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,499 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9f/5f/1fd5587437c9e6331fe7a1d85d11d1e7d71fd21e068d1f0800c30bd2d0ec/pyhmmer-0.4.11-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,501 Found link https://files.pythonhosted.org/packages/65/f3/1de70443d58ccf843aaaa01393d640452e26b60912c0998302a0b8fea021/pyhmmer-0.4.11.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.11 2023-08-04T11:39:18,501 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/90/24/136abcb4ad189a00cb41409d3887d892a8764231aa863c0e9d181952c989/pyhmmer-0.5.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,502 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/97/5a/9983f2ef20d457d0065c12d96103c9ff25581089fc29478f2d387ede8007/pyhmmer-0.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,502 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/66/e6/77a0ac512c431181dcb2ea9d41912a09518dd4514689bcf035a31576e479/pyhmmer-0.5.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,507 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/53/3e5af9674d0cb1bbe737f2253f9ade02ccb8d84835568e6d76c2de00e3e1/pyhmmer-0.5.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,508 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/8e/3030e8640238fe995a33b34bbcf073e3c37859cb8cddab5badde1c9f698d/pyhmmer-0.5.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,508 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f7/37/f35d1b12f6758bcee4c013957c23e7719e1db5795f37bf64e4367b9992b8/pyhmmer-0.5.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,510 Found link https://files.pythonhosted.org/packages/d4/b4/860e63999b6827d880f4985cae22adc88e92ab2e2b06e954abb60be2d411/pyhmmer-0.5.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.5.0 2023-08-04T11:39:18,510 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/81/e44ca051aa0c14b3d371da0e11c53b8c97915c587a4d2d8958b761bca739/pyhmmer-0.6.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,511 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/24/ff258c00e8a3d8f9d0f3a34f32f3405bee99ef0339a6fc4d529b6970cc49/pyhmmer-0.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,512 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/98/b4/4fb7c0d1956678b92ba1deac8e1f26fe6391e362a88aac7a1c6743fa85e2/pyhmmer-0.6.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,512 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/aa/cb/e9b4113ab1049e1f13828043ee41dec823111fa0d1ba95b8ed17aa2479da/pyhmmer-0.6.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,513 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e2/16/950a9891b018accdc4cf2eac23cd4b2cc64eced8b6774a206ac9bdcfe79f/pyhmmer-0.6.0-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,513 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/37/9e560cd8eb371df3b31e9e60b9503b51155607f8ca1948cb4009a0c47519/pyhmmer-0.6.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,514 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/85/ec2e8f9b2eb9ac3c6a71f1a9cd29c43ffa2a0bdf23da96dcd6c8135b5a88/pyhmmer-0.6.0-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,514 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b4/6a/8a3467282158fac08ea0dc646378789abe5dfa9e77af5f25a1fb658e3a3e/pyhmmer-0.6.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,514 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/24/e5cba7b51dc391c8bc45dd7f98e61804088f8cc35346b362dedc94fae471/pyhmmer-0.6.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,515 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/ad/68a14e424200099462bd97c58fefe3b428a6522ae11b2e2b195bbbd6d15a/pyhmmer-0.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,516 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/2d/cd5b9729a37b0cdbe932461c79f74c75d17ac665f080f95633a8c275852d/pyhmmer-0.6.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,516 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/e9/3a1f5a5aa46b482a3bca632fff9cb173c91ba5f02a96a3f5c0d730660519/pyhmmer-0.6.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,517 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7b/72/119583107572a60f86e0f8578a7bf5d03928eeb3107d3e469336c5c41245/pyhmmer-0.6.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,517 Skipping link: No binaries 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https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,537 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2023-08-04T11:39:18,538 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,539 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,542 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,543 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,543 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,544 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,544 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,545 Skipping link: No binaries 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https://files.pythonhosted.org/packages/0f/68/dd15664d24aceaef5e94f961bffa45d9095d8f8499d64e78eddddd1ef7a9/pyhmmer-0.7.0rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,549 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/01/cb2f9126a8cc8a16f12651d80cad00f1c285451ba20ead2b461bb86ff5a7/pyhmmer-0.7.0rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,550 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/16/5269fa02ad5001fe304296e4de68cc3b316981363a07e0f620d034520e33/pyhmmer-0.7.0rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,550 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/49/77/4a2cfc97cb2432d41d16bb851e01360e3f6fea5579c153083220927e779c/pyhmmer-0.7.0rc2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,560 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/19/9f/c9bd67b4506ea74c87aa2170245f52a7ef31d9ab0091c1f341c6cf76fa9b/pyhmmer-0.7.0rc2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,560 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/03/ee7fbc006cfd40bacc68f90e34ae6c0648eeb66e63f1702c57a595f23beb/pyhmmer-0.7.0rc2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,561 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/f6/b77002e48c526bdb1ec0bee0697ee021f31702ff7618adc1f7c8458638d8/pyhmmer-0.7.0rc2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,561 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/56/143d6ec67af6539abafac7d5ed7eda2f7dc4a22dc7ebeeb491a808a923a7/pyhmmer-0.7.0rc2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,562 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/35/66d385727a9178511182bfe841a12d45f7f64425fdfdd9ed0d93e6a74bb8/pyhmmer-0.7.0rc2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,562 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e4/d8/d5d5bec33f7ef7e4162e43e846cec992055d17864c098a1e55b96a34050f/pyhmmer-0.7.0rc2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,563 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/39/c0/6a46e969f7c1f77f5cc19011827469176b0569cbee1f2ec80f5865f49ad6/pyhmmer-0.7.0rc2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,563 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1c/92/5602f15a7bbb92b08e92e4636813015754067aa97c0511ea1801852c1e66/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,564 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/ff/ece5bd11cf4cc3ec6f664f0e3a111ad6dcf207d3f6ec2ad96165259a412b/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,564 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/d2/b4d94b6921db1e4c69e9f41bb559d66fe18a2a098cde1e6434706e1eabc6/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,565 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/55/c39dc94317204fd84d5d8bbb6aed951be0706970eb5e3998aa0a4a35f46b/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,565 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f2/b9/46f7e47792b6dcd5d3330313efceea13105448ae6f6cb13af72cb60427d1/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,566 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,567 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2023-08-04T11:39:18,568 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,569 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/8b/45d7eb18b457d0a36bacee35ad14a52af74c6ad5eab2901492996e9aa4b7/pyhmmer-0.7.0rc3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,569 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/75/25d2b67c70032fd8201bcead370e87316ed0531854aaf2b9f3061623fe33/pyhmmer-0.7.0rc3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,570 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/f3/a6f3b814701a7fc0652810dcdeaaf6a60aaf90d30de21ca7c2fb873b5762/pyhmmer-0.7.0rc3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,570 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,571 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,571 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/ed/b906f6c410f04eecda1943c731e45a73448a98ce8ca04984bfff107b217d/pyhmmer-0.7.0rc3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,572 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/1e/19f92118d755272eba30bfa611635be0d67428d65dfc5c5ecd544e45e0ad/pyhmmer-0.7.0rc3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,572 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/2c/bf48a68a87561fa1e263ca6cb00d1345794280070dd484845aa2d4cf8844/pyhmmer-0.7.0rc3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,573 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/0c/d7/389876620f3b9fe1feea99c9b6b482d8b1f115671c06fbaa92bda816c189/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,575 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/90/e1/dcccd398039ac13a2a23114fe29ba40a1270c0498b9c7d15dccf098d02db/pyhmmer-0.7.0rc3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,575 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/22/86eaea1f4be5e5dd587f216169ba9f7a445b166b719c4fb364df45cf5eb8/pyhmmer-0.7.0rc3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,576 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b2/50/e377323457ca4ac99d9a374e5a2d23cefc1007eedd186a1e33a4ed5531fd/pyhmmer-0.7.0rc3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,576 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/99/f426e48fd4c851ff69b0d669d9c7f782c7c8c0a4b753dd93d7dcdc18a91f/pyhmmer-0.7.0rc3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,577 Found link https://files.pythonhosted.org/packages/cb/78/d51baf5d1a2bd5040c253ca8a847b92f6a361d08ed6e108ae8ff10fae578/pyhmmer-0.7.0rc3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc3 2023-08-04T11:39:18,578 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e8/27/a5f9c4c906b5e2047bfa71709d96c26944508615dbe08f4b2fafd952564f/pyhmmer-0.7.0rc4-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,583 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/c0/3ef8ced20ac64ab83d16d855b23540751c1626d1d5b8e8cee4440bcabfb3/pyhmmer-0.7.0rc4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,584 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2a/df/a287f8b111ba8688c5c58e772e6d276fb3c14515249e39a50515160a85d2/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,584 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a9/0f/e0fdfe3a3872753e8205280a83f8bfb09cdd56050bfb84137627c905bdc0/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,586 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,588 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2023-08-04T11:39:18,589 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a8/5302df454773f5b6a9dc9c29d540b3195f8d10ea47773bf5ba2fe934c065/pyhmmer-0.7.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,590 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3c/74/ee460564fd2c0d9404e75649c4a5e476d962c37b018de89592f7960d1325/pyhmmer-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,590 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/e9/3d4b55e50c0815ec25f18e367982e588bc84033e6b8d5417671210214dc5/pyhmmer-0.7.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,591 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7d/64/775e2adae614da4f3481e035153058f95338913b433d82a2b295e672c753/pyhmmer-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,591 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/f9/c669b9adabe8996277e8a2bb6f08568509ea95cadfcb76121150d24b5f93/pyhmmer-0.7.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,592 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4f/54/985dcf1e22569b0904bd17b1f17e713dc94a7ab13b767c9f5d90f54daba1/pyhmmer-0.7.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,592 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/be/c8/273b776dc57d54b80741592ca6aee62fb31982f4ead0bbc1510a3d89f95e/pyhmmer-0.7.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,596 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/15/3005213eddd959f34442df93ebc4e44c28bb223ad9a7fa407ecc8b788e92/pyhmmer-0.7.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,596 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/e5/abea9b8c2217a67965d536d91263e89b9e1f896b54608a9e1354e6b4f38f/pyhmmer-0.7.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,597 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9e/17/03f003657c307cd45ab90e60c6ac65a72b895610952fcc41bcbb16c20013/pyhmmer-0.7.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,597 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,599 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2023-08-04T11:39:18,599 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9a/e8/add2c7bb63616995f729fb215fad8dc578ac8de57e469830f42878e52a32/pyhmmer-0.7.1rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,601 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/6a/b83eeb054f43e80c0cbe6877314d2a581b51252436da6a0b91fed65482d3/pyhmmer-0.7.1rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,602 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3a/cb/fcf2cdb81b840f0d81299dad023301851aa18832f2dfd9f35a6b502f4ccd/pyhmmer-0.7.1rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,603 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/2b/62/e270b0e792b85332ebbaccf137a9b3c33ff035c4be12ec3760aed67dd5da/pyhmmer-0.7.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,612 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ae/0d/f38735e35b50b639b70c9a74b58ea25614a81b0a188d89b692139001bca0/pyhmmer-0.7.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,612 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/49/2363ee3fe7995921638cfa8f2df825168c47e0bd05f24374319e6bc8fa5e/pyhmmer-0.7.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,613 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/65/61/e5d74affedd6c3ff3d2c17e8dd278921194411035ff093dbb17a8f3e4525/pyhmmer-0.7.1-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,615 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/93/f3/b3f6892b4bb54f3e74c255b7e977acb1b0149601197c40d0e388c481897c/pyhmmer-0.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,615 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f5/95/fb8f90d881b6253d0ca29b0fd714b2237733721aa108b20272801822d7dc/pyhmmer-0.7.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,616 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/77/bde94d470ac47242abc0754a02a21311339c2d4fc367631d91a940946ab1/pyhmmer-0.7.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,616 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/d3/462aea5aca8f8169bee7b77b380d0221bb8b452e07b54967b352fc9383bd/pyhmmer-0.7.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,617 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/a2/173fe1c90b803e6bfef9190ece6e479552be0f8afdb606e8639d543a35df/pyhmmer-0.7.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,617 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/45/64/476e25cf2eb37d76881022a6c42c8da9e06a93b1af51fc596ede5c6d68ce/pyhmmer-0.7.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,618 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/22/b0/978fe1e68b3bdcfb1662358de0b11229dcb0af7b04fec6efdabe0270389a/pyhmmer-0.7.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,619 Found link https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.1 2023-08-04T11:39:18,620 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3a/5cfa3d249b3b2d9a15efefe9fe084d3cdb02f42a986f923165ed04d0d9c3/pyhmmer-0.7.2-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,620 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ee/77/b3e1ed830c69047796d6368d0e4e56280e3962650af7a7aa90fd5fada9fe/pyhmmer-0.7.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,621 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/09/566484b8473a0216d855221e6b21b3ed6a7c8ec31bb08966cf5ce6dbe5b7/pyhmmer-0.7.2-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,621 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/8f/886997e0b208edbab94576eb4dbfcd56dcac054700f7246a15300098e210/pyhmmer-0.7.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,622 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/20/82e0a7504688cabb764417b4d141b0bb96f86632b8e499773e0dd391c9e3/pyhmmer-0.7.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,622 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/d5/e46bec7d9e8c5e242f7f6c3286f8af3bc2ae4bf9ea42d91e1f8d426b7561/pyhmmer-0.7.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,623 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/dc/9356b86de2f272c8e0cc4f577c72d3ae4e86727e26491f80cd8dc8063a9a/pyhmmer-0.7.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,623 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/36/5fda154acd4dbde82c5f8ef5d4bb2532707c8b6b1138645673773ac139f8/pyhmmer-0.7.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,624 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0e/e2/f830bf6972a294569182d6ea4026af2a902fd6cdd6f06dd0ed62bce231e5/pyhmmer-0.7.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,624 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/39/0098a2887eb2db25c5cd259dc8635beca3b1aebb18d56b95fad851592223/pyhmmer-0.7.2-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,625 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ad/cf/b678ce405273a64b4295f73a3357e988b2bce163862a9730a4b81650c626/pyhmmer-0.7.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,625 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/27/44ffc8ed4f96c4c5cc2fef672cfb66c9d84f1f26bc903c812b0b4fa4d673/pyhmmer-0.7.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,626 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/c6/c57c9f59c6d5c6e177aee95307f863bd058585dd0b0bfca4c34f7f13cd42/pyhmmer-0.7.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,626 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/db/4f93af5a00686347346a325ac84cae95fe6af81681c3489c83ac27629862/pyhmmer-0.7.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,627 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d1/f7/4bbda84916bb53d5427da8950d2c057db73fccdc33c632c941c524cdb53d/pyhmmer-0.7.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,627 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/03/cad0781ef73c4f4f52937840947c8d49cf2b2cbbd070c44b59e31d263a69/pyhmmer-0.7.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,628 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/15/65/80d52997be40674fd2c69b9828b058760e41b776b78af40a72902b86acd6/pyhmmer-0.7.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,629 Found link https://files.pythonhosted.org/packages/df/a9/2657add69b3315c419cb618bd3d7fd5980a6b0f30599111e6ed64ca3cef4/pyhmmer-0.7.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.2 2023-08-04T11:39:18,630 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/43/c1/73a9f4bc5dff132e66d44aed2c65fe49d803345383ad1ce3be8263b90e67/pyhmmer-0.7.3-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,631 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/81f51877f44a77d141dea4b76937158affd960ef965ebfe0b5c13402a8f9/pyhmmer-0.7.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,631 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7a/1d/f1f7d1e4f936603678831b3bec693038ae09d7efd6eebd1324d0942c1659/pyhmmer-0.7.3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,632 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/68/6fdcccd7979cd0092039016c3eac4caa02a11c1d3890ab0951311cc07744/pyhmmer-0.7.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,632 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/a2/b2a5784e37a247475e4a58816ccceec0734c5bbbc1a9a231306fc6735d8b/pyhmmer-0.7.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,633 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/96/ea0e67c0fd99012756abef527adc30a2528315cfb75944757faad9b78c27/pyhmmer-0.7.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,633 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/62/49/d59f2cc10afaf02538988eae5d76975a0d402a2b641fe161d46a5a3a5b62/pyhmmer-0.7.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,634 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fd/74/2dec67a4756891cf0b45fa2ed3a1ca0d4a06ea3a3064090d20cf0f47e162/pyhmmer-0.7.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,634 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/04/8a/c3403218b9a93886aa949854a90b7ccf6beff39c85a0f4f722f31811202b/pyhmmer-0.7.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,635 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e2/db/62121a05d99bb99e7f14f0fddb97e82ae2bca48c891dd16d09f99b3eceab/pyhmmer-0.7.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,638 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b3/56/a1d60989df6dd057fca1566c4ba98373572236c886241e68e96af82fe92b/pyhmmer-0.7.3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,639 Found link https://files.pythonhosted.org/packages/63/6c/9ba4ec4440099d30c4821e8740edb2340e6192b934e81057f7921666c1db/pyhmmer-0.7.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.3 2023-08-04T11:39:18,640 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4a/3c/13929dd0c58c62b1513bdfe818969e6f2ec4da023527b38565af60b91b8b/pyhmmer-0.7.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,642 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/44/2ca763c3a425e922554b8eb10113ceb8c195639c6fccea846da2551cd923/pyhmmer-0.7.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,643 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/40/7dc955411414cee0db769d602cb2e8d593707786c9572bec05721491c5a9/pyhmmer-0.7.4-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,643 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/26/b8f4f0f8c71bf51d30885978636e4281ce8130bf57136d2d048da93ae2a9/pyhmmer-0.7.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,644 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3e/63/5219330ab124df581bc1d23046ff5b43534e606e9bdcf2abfc10a50b62f9/pyhmmer-0.7.4-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,644 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/7a/7e3d72b99ff0cede0022113042bc09f911041437a8f80827103b660bcecf/pyhmmer-0.7.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,645 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/0c/2f/8b471542f68ccfd607cbd8edd5416bb054c454349f72d1ec1aca4546ab64/pyhmmer-0.7.4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,647 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/5b/56febea19382034f45f8efd31e4cc025e88d47fcbf3b8a702e67daca65d2/pyhmmer-0.7.4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,647 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/4b/b94e77c892e9b6c656e753fe00a2e244dd63ceb1114004d3ab4c66940fc3/pyhmmer-0.7.4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,648 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/df/9b/9dd24babb7f1ef8a2fc26e39684ecc85193685b14cac93b1ab3821eada03/pyhmmer-0.7.4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,648 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/0f/687049e993619cf051ce153f9f5d195290f9df872a46ef5ed55f168cb073/pyhmmer-0.7.4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,650 Found link https://files.pythonhosted.org/packages/d4/83/1abac79f144f82424fc1e3959db6fda4d5cedc251d804b0bedbfca9b90b0/pyhmmer-0.7.4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.4 2023-08-04T11:39:18,650 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/76/9d254f4f85a2b15718dca73e2091837e359b3b19eb30d47ae15fc236c088/pyhmmer-0.8.0-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,651 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/4e/6698347f2848bf6e953daee133c6cc27fb7f340a1946815cc9566a3a3539/pyhmmer-0.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,651 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/72/99abe4102e7994572f8d786abaaa8974352e917a690e888c2becc89f93b6/pyhmmer-0.8.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,652 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c4/a6/2560bcdda70fda6cb767272851a84c700ab754bb3193ab4e7a077d10cf3d/pyhmmer-0.8.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,652 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/54/80/54e8e341dd4dbe26f6421db55e52a5381403c5a7fdb505b6348dc9661e07/pyhmmer-0.8.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,653 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/c5/7fd7e8f5418e609b6d6b12c5a24439943d85600a98ca94a248cfcf5aa1dd/pyhmmer-0.8.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,653 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/d4/0d65fae4b288faaec2eb9cc27db600a01dcf50be1ad4961904340e1b74f6/pyhmmer-0.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,654 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cc/73/fe5f2fab87655bb9eb30f9b6177b1d4b1593873d12960a5e4fee74d9c9f2/pyhmmer-0.8.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,654 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/17/8e/1161db151a5638878ffa1de64d6af0133a3a24400cd02ae6967aef498c4d/pyhmmer-0.8.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,655 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/2d/6d020e9303d2422ed199d3181a96117b25366bef87fd4e1d49f964644a72/pyhmmer-0.8.0-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,655 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/d6/df65848b5f3c3ea24a7a1a19fee4fd559377953d62e048bec4eba7b68043/pyhmmer-0.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,656 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/88/90/0f0af36b0861b542292872bf99696eb852bb2ffdae35e02532b924a91736/pyhmmer-0.8.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,656 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/29/5a7a4bd1ada554e49d34d8050ae571e5679f80fcae115ae2e4794cfac402/pyhmmer-0.8.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,657 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/2e/5a9fdfa2fa8e7896954ae2bdceea262ed56668704d442e7b4a8f2cfca534/pyhmmer-0.8.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,657 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/18/64/3883ac90e9e1cd3826a4ba4872af387f914b6879d76cb48e2ccca4d589ed/pyhmmer-0.8.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,658 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/f2/1a/daef14e72d7b7115c814a9fcc2ff6c34cd79b777221d9b374e0452724a03/pyhmmer-0.8.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,668 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fe/6568f474e66ade3d023fd9c1a9d3e9c0d612eebb13fd2abbcaa32e0c07d5/pyhmmer-0.8.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,670 Found link https://files.pythonhosted.org/packages/3d/12/beb37509be629206b9ca05f631533271c4bc4ed4f52891f772ca1ec0219d/pyhmmer-0.8.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.8.1 2023-08-04T11:39:18,670 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/35/62/2dd4b543a1be28c87b20c0176c7f6c9793fec2f948c67dc4d9e15e920d74/pyhmmer-0.8.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,673 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0a/b4/d6842c31ab612714e693d13852d0b8e30877583e2c1e4c7a54e5072cf6e3/pyhmmer-0.8.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,673 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/38/04/689d911435b871b9f9beeed09997002bd8869a80efb217cd4dc12fa3be0c/pyhmmer-0.8.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,674 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/48/aa/173348482e94cb75d7ca8140cb644583294a51c947263b075ae98d7d451c/pyhmmer-0.8.2-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,676 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/d7/8cbf5c5a3b14fa0ffcbf08c862f2f9e2ac6753be228af04e8feaf724b4da/pyhmmer-0.8.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,676 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/ee/d6c8985da391696aaa09eb694172201c1eead5f366a8e61790c735c525e9/pyhmmer-0.8.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,676 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/d9/4e2212224e53a8b9373c0831a3c16d115dce9c6e2c847c867a1f1b8284fd/pyhmmer-0.8.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,677 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/f4/28ed40514d1f483669b4f80de51a7c1770ebd84255890ea468f641ef17c4/pyhmmer-0.8.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,678 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/64/845f17d9680d7703d8deaa729141dd33da734b9602cebc224a7533c0f239/pyhmmer-0.8.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,678 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/7c/17274676ff47462404c50fd7d03eb2793ab33d0405fb8830c674f29cd7e0/pyhmmer-0.8.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,679 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/6d/1fd4669db2d3a14e80bdb59377b0a537b26fb98798cbce9a4ccc2943d5b1/pyhmmer-0.8.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,680 Found link https://files.pythonhosted.org/packages/f1/c9/c047535dbe805d92a3d6fb8b602f19728c4c91d897a4da2f8d46f5f83cc6/pyhmmer-0.8.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.8.2 2023-08-04T11:39:18,681 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/98/31/4b8b4631703b3a96ba4485306568c658f9f2d5f56161c705db8f695dec71/pyhmmer-0.9.0-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,681 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/01/8f/cd5c956a65373f873d4bcebd59546abf2103f3845b81da10d7897a9cfddc/pyhmmer-0.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,682 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/02/99/8e05a5b9a8664b7cf8a2c59f0b7f05ada19b30354fafcf0a240bff65fd79/pyhmmer-0.9.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,682 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/f6/6e/71cab0cdd70654e1c245ae6ef4a691ceb97fbbf6cc8551c237add94b6a05/pyhmmer-0.9.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,687 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6d/8f/fc5251bc0c344176a4208ab7c7f56efc67d924c8ad9b5e3e7594efef517e/pyhmmer-0.9.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,688 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/22/25/fbf2e221b90b0297df47d1688c5015fdc62c831cd4b3b689eac524bf192a/pyhmmer-0.9.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,688 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/e3/e830f6d54ae9dd2e07c6e399d18f335749bda3e2eb608682494a447c8988/pyhmmer-0.9.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,689 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4d/9c/59beb6fbc6d19cadee582a096245e042f8c59d9cf8f7770a843cf66d0636/pyhmmer-0.9.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:39:18,690 Found link https://files.pythonhosted.org/packages/b9/eb/dcae2181c127c3cd8334a88b56729814e1aad5eb0f76c620fe87dc6b3043/pyhmmer-0.9.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.9.0 2023-08-04T11:39:18,691 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2023-08-04T11:39:18,692 Getting page https://www.piwheels.org/simple/pyhmmer/ 2023-08-04T11:39:18,694 Found index url https://www.piwheels.org/simple/ 2023-08-04T11:39:18,916 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2023-08-04T11:39:18,918 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2023-08-04T11:39:18,918 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2023-08-04T11:39:18,966 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2023-08-04T11:39:18,998 Collecting pyhmmer==0.9.0 2023-08-04T11:39:19,002 Created temporary directory: /tmp/pip-unpack-k0dhf4kp 2023-08-04T11:39:19,205 Downloading pyhmmer-0.9.0.tar.gz (11.0 MB) 2023-08-04T11:39:28,835 Added pyhmmer==0.9.0 from https://files.pythonhosted.org/packages/b9/eb/dcae2181c127c3cd8334a88b56729814e1aad5eb0f76c620fe87dc6b3043/pyhmmer-0.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-sk0btm8_' 2023-08-04T11:39:28,846 Created temporary directory: /tmp/pip-build-env-n8y6cy4k 2023-08-04T11:39:28,866 Installing build dependencies: started 2023-08-04T11:39:28,868 Running command pip subprocess to install build dependencies 2023-08-04T11:39:31,618 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-08-04T11:39:32,460 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-04T11:39:36,405 Collecting setuptools>=46.4 2023-08-04T11:39:36,597 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-08-04T11:39:40,201 Collecting cython~=3.0 2023-08-04T11:39:41,056 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.0-cp37-cp37m-linux_armv7l.whl (4.3 MB) 2023-08-04T11:39:47,324 Installing collected packages: setuptools, cython 2023-08-04T11:39:57,659 Creating /tmp/pip-build-env-n8y6cy4k/overlay/bin 2023-08-04T11:39:57,664 changing mode of /tmp/pip-build-env-n8y6cy4k/overlay/bin/cygdb to 755 2023-08-04T11:39:57,669 changing mode of /tmp/pip-build-env-n8y6cy4k/overlay/bin/cython to 755 2023-08-04T11:39:57,673 changing mode of /tmp/pip-build-env-n8y6cy4k/overlay/bin/cythonize to 755 2023-08-04T11:39:57,719 Successfully installed cython-3.0.0 setuptools-68.0.0 2023-08-04T11:39:57,752 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-04T11:39:57,752 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-04T11:39:58,279 Installing build dependencies: finished with status 'done' 2023-08-04T11:39:58,290 Getting requirements to build wheel: started 2023-08-04T11:39:58,292 Running command Getting requirements to build wheel 2023-08-04T11:40:00,313 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-08-04T11:40:00,448 Getting requirements to build wheel: finished with status 'done' 2023-08-04T11:40:00,484 Installing backend dependencies: started 2023-08-04T11:40:00,486 Running command pip subprocess to install backend dependencies 2023-08-04T11:40:03,212 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-08-04T11:40:04,047 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-04T11:40:04,974 Collecting wheel 2023-08-04T11:40:05,012 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.0-py3-none-any.whl (64 kB) 2023-08-04T11:40:10,237 Installing collected packages: wheel 2023-08-04T11:40:10,693 Creating /tmp/pip-build-env-n8y6cy4k/normal/bin 2023-08-04T11:40:10,698 changing mode of /tmp/pip-build-env-n8y6cy4k/normal/bin/wheel to 755 2023-08-04T11:40:10,725 Successfully installed wheel-0.41.0 2023-08-04T11:40:10,758 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-04T11:40:10,759 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-04T11:40:11,126 Installing backend dependencies: finished with status 'done' 2023-08-04T11:40:11,132 Created temporary directory: /tmp/pip-modern-metadata-1q_g61sq 2023-08-04T11:40:11,138 Preparing metadata (pyproject.toml): started 2023-08-04T11:40:11,141 Running command Preparing metadata (pyproject.toml) 2023-08-04T11:40:13,150 running dist_info 2023-08-04T11:40:13,178 creating /tmp/pip-modern-metadata-1q_g61sq/pyhmmer.egg-info 2023-08-04T11:40:13,189 writing /tmp/pip-modern-metadata-1q_g61sq/pyhmmer.egg-info/PKG-INFO 2023-08-04T11:40:13,196 writing dependency_links to /tmp/pip-modern-metadata-1q_g61sq/pyhmmer.egg-info/dependency_links.txt 2023-08-04T11:40:13,200 writing requirements to /tmp/pip-modern-metadata-1q_g61sq/pyhmmer.egg-info/requires.txt 2023-08-04T11:40:13,202 writing top-level names to /tmp/pip-modern-metadata-1q_g61sq/pyhmmer.egg-info/top_level.txt 2023-08-04T11:40:13,205 writing manifest file '/tmp/pip-modern-metadata-1q_g61sq/pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:40:13,316 reading manifest file '/tmp/pip-modern-metadata-1q_g61sq/pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:40:13,320 reading manifest template 'MANIFEST.in' 2023-08-04T11:40:14,588 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-08-04T11:40:14,588 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-08-04T11:40:14,593 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-08-04T11:40:14,597 no previously-included directories found matching 'vendor/easel/demotic' 2023-08-04T11:40:14,601 no previously-included directories found matching 'vendor/easel/documentation' 2023-08-04T11:40:14,604 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-08-04T11:40:14,608 no previously-included directories found matching 'vendor/easel/miniapps' 2023-08-04T11:40:14,611 no previously-included directories found matching 'vendor/easel/testsuite' 2023-08-04T11:40:14,615 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-08-04T11:40:14,619 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-08-04T11:40:14,622 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-08-04T11:40:14,626 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-08-04T11:40:14,629 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-08-04T11:40:14,633 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-08-04T11:40:14,636 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-08-04T11:40:14,637 adding license file 'COPYING' 2023-08-04T11:40:14,710 writing manifest file '/tmp/pip-modern-metadata-1q_g61sq/pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:40:14,715 creating '/tmp/pip-modern-metadata-1q_g61sq/pyhmmer-0.9.0.dist-info' 2023-08-04T11:40:15,059 Preparing metadata (pyproject.toml): finished with status 'done' 2023-08-04T11:40:15,077 Source in /tmp/pip-wheel-ubnl31c8/pyhmmer_14eb8826f31444cc8934d016c5e1dbe4 has version 0.9.0, which satisfies requirement pyhmmer==0.9.0 from https://files.pythonhosted.org/packages/b9/eb/dcae2181c127c3cd8334a88b56729814e1aad5eb0f76c620fe87dc6b3043/pyhmmer-0.9.0.tar.gz 2023-08-04T11:40:15,079 Removed pyhmmer==0.9.0 from https://files.pythonhosted.org/packages/b9/eb/dcae2181c127c3cd8334a88b56729814e1aad5eb0f76c620fe87dc6b3043/pyhmmer-0.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-sk0btm8_' 2023-08-04T11:40:15,098 Created temporary directory: /tmp/pip-unpack-j13egqzz 2023-08-04T11:40:15,099 Building wheels for collected packages: pyhmmer 2023-08-04T11:40:15,109 Created temporary directory: /tmp/pip-wheel-fgj6ecvl 2023-08-04T11:40:15,109 Destination directory: /tmp/pip-wheel-fgj6ecvl 2023-08-04T11:40:15,114 Building wheel for pyhmmer (pyproject.toml): started 2023-08-04T11:40:15,116 Running command Building wheel for pyhmmer (pyproject.toml) 2023-08-04T11:40:17,139 running bdist_wheel 2023-08-04T11:40:17,172 running build 2023-08-04T11:40:17,173 running build_py 2023-08-04T11:40:17,194 creating build 2023-08-04T11:40:17,195 creating build/lib.linux-armv7l-cpython-37 2023-08-04T11:40:17,196 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:17,198 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:17,202 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:17,205 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:17,214 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-04T11:40:17,216 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-04T11:40:17,219 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-04T11:40:17,223 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-04T11:40:17,226 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-04T11:40:17,232 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-04T11:40:17,238 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,240 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,244 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,249 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,255 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,259 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,264 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,269 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,275 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,279 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,283 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,288 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,292 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,296 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-04T11:40:17,304 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,306 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,313 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,317 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,321 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,326 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,331 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,335 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,338 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,343 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,348 copying pyhmmer/tests/test_easel/test_gencode.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,353 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,357 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,362 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,366 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-04T11:40:17,370 running egg_info 2023-08-04T11:40:17,404 writing pyhmmer.egg-info/PKG-INFO 2023-08-04T11:40:17,409 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2023-08-04T11:40:17,414 writing requirements to pyhmmer.egg-info/requires.txt 2023-08-04T11:40:17,416 writing top-level names to pyhmmer.egg-info/top_level.txt 2023-08-04T11:40:17,453 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:40:17,498 reading manifest template 'MANIFEST.in' 2023-08-04T11:40:18,824 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-08-04T11:40:18,824 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-08-04T11:40:18,831 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-08-04T11:40:18,836 no previously-included directories found matching 'vendor/easel/demotic' 2023-08-04T11:40:18,841 no previously-included directories found matching 'vendor/easel/documentation' 2023-08-04T11:40:18,846 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-08-04T11:40:18,851 no previously-included directories found matching 'vendor/easel/miniapps' 2023-08-04T11:40:18,857 no previously-included directories found matching 'vendor/easel/testsuite' 2023-08-04T11:40:18,862 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-08-04T11:40:18,867 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-08-04T11:40:18,872 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-08-04T11:40:18,877 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-08-04T11:40:18,882 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-08-04T11:40:18,887 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-08-04T11:40:18,892 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-08-04T11:40:18,893 adding license file 'COPYING' 2023-08-04T11:40:18,994 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:40:19,016 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.fileobj' is absent from the `packages` configuration. 2023-08-04T11:40:19,016 !! 2023-08-04T11:40:19,017 ******************************************************************************** 2023-08-04T11:40:19,017 ############################ 2023-08-04T11:40:19,018 # Package would be ignored # 2023-08-04T11:40:19,018 ############################ 2023-08-04T11:40:19,018 Python recognizes 'pyhmmer.fileobj' as an importable package[^1], 2023-08-04T11:40:19,019 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,019 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,020 package, please make sure that 'pyhmmer.fileobj' is explicitly added 2023-08-04T11:40:19,020 to the `packages` configuration field. 2023-08-04T11:40:19,021 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,021 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,022 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,022 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,023 If you don't want 'pyhmmer.fileobj' to be distributed and are 2023-08-04T11:40:19,023 already explicitly excluding 'pyhmmer.fileobj' via 2023-08-04T11:40:19,024 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,024 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,024 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,025 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,025 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,026 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,026 even if it does not contain any `.py` files. 2023-08-04T11:40:19,027 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,027 directory, all directories are treated like packages. 2023-08-04T11:40:19,027 ******************************************************************************** 2023-08-04T11:40:19,028 !! 2023-08-04T11:40:19,028 check.warn(importable) 2023-08-04T11:40:19,029 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.reexports' is absent from the `packages` configuration. 2023-08-04T11:40:19,029 !! 2023-08-04T11:40:19,029 ******************************************************************************** 2023-08-04T11:40:19,030 ############################ 2023-08-04T11:40:19,030 # Package would be ignored # 2023-08-04T11:40:19,030 ############################ 2023-08-04T11:40:19,031 Python recognizes 'pyhmmer.reexports' as an importable package[^1], 2023-08-04T11:40:19,031 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,032 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,032 package, please make sure that 'pyhmmer.reexports' is explicitly added 2023-08-04T11:40:19,032 to the `packages` configuration field. 2023-08-04T11:40:19,033 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,033 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,033 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,034 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,035 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,035 If you don't want 'pyhmmer.reexports' to be distributed and are 2023-08-04T11:40:19,035 already explicitly excluding 'pyhmmer.reexports' via 2023-08-04T11:40:19,036 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,036 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,036 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,037 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,037 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,038 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,039 even if it does not contain any `.py` files. 2023-08-04T11:40:19,039 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,039 directory, all directories are treated like packages. 2023-08-04T11:40:19,039 ******************************************************************************** 2023-08-04T11:40:19,040 !! 2023-08-04T11:40:19,040 check.warn(importable) 2023-08-04T11:40:19,041 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data' is absent from the `packages` configuration. 2023-08-04T11:40:19,041 !! 2023-08-04T11:40:19,042 ******************************************************************************** 2023-08-04T11:40:19,042 ############################ 2023-08-04T11:40:19,042 # Package would be ignored # 2023-08-04T11:40:19,042 ############################ 2023-08-04T11:40:19,043 Python recognizes 'pyhmmer.tests.data' as an importable package[^1], 2023-08-04T11:40:19,043 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,044 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,044 package, please make sure that 'pyhmmer.tests.data' is explicitly added 2023-08-04T11:40:19,044 to the `packages` configuration field. 2023-08-04T11:40:19,045 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,045 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,045 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,046 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,046 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,047 If you don't want 'pyhmmer.tests.data' to be distributed and are 2023-08-04T11:40:19,047 already explicitly excluding 'pyhmmer.tests.data' via 2023-08-04T11:40:19,048 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,048 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,048 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,049 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,049 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,050 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,050 even if it does not contain any `.py` files. 2023-08-04T11:40:19,051 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,051 directory, all directories are treated like packages. 2023-08-04T11:40:19,051 ******************************************************************************** 2023-08-04T11:40:19,052 !! 2023-08-04T11:40:19,052 check.warn(importable) 2023-08-04T11:40:19,052 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms' is absent from the `packages` configuration. 2023-08-04T11:40:19,053 !! 2023-08-04T11:40:19,053 ******************************************************************************** 2023-08-04T11:40:19,053 ############################ 2023-08-04T11:40:19,054 # Package would be ignored # 2023-08-04T11:40:19,054 ############################ 2023-08-04T11:40:19,054 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package[^1], 2023-08-04T11:40:19,055 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,055 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,055 package, please make sure that 'pyhmmer.tests.data.hmms' is explicitly added 2023-08-04T11:40:19,056 to the `packages` configuration field. 2023-08-04T11:40:19,056 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,057 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,057 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,057 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,058 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,059 If you don't want 'pyhmmer.tests.data.hmms' to be distributed and are 2023-08-04T11:40:19,059 already explicitly excluding 'pyhmmer.tests.data.hmms' via 2023-08-04T11:40:19,059 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,059 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,060 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,060 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,061 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,062 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,062 even if it does not contain any `.py` files. 2023-08-04T11:40:19,062 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,062 directory, all directories are treated like packages. 2023-08-04T11:40:19,063 ******************************************************************************** 2023-08-04T11:40:19,064 !! 2023-08-04T11:40:19,064 check.warn(importable) 2023-08-04T11:40:19,064 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.bin' is absent from the `packages` configuration. 2023-08-04T11:40:19,064 !! 2023-08-04T11:40:19,065 ******************************************************************************** 2023-08-04T11:40:19,065 ############################ 2023-08-04T11:40:19,066 # Package would be ignored # 2023-08-04T11:40:19,066 ############################ 2023-08-04T11:40:19,066 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package[^1], 2023-08-04T11:40:19,066 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,067 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,067 package, please make sure that 'pyhmmer.tests.data.hmms.bin' is explicitly added 2023-08-04T11:40:19,067 to the `packages` configuration field. 2023-08-04T11:40:19,068 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,069 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,069 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,070 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,070 If you don't want 'pyhmmer.tests.data.hmms.bin' to be distributed and are 2023-08-04T11:40:19,071 already explicitly excluding 'pyhmmer.tests.data.hmms.bin' via 2023-08-04T11:40:19,071 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,071 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,071 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,072 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,073 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,073 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,074 even if it does not contain any `.py` files. 2023-08-04T11:40:19,074 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,074 directory, all directories are treated like packages. 2023-08-04T11:40:19,075 ******************************************************************************** 2023-08-04T11:40:19,075 !! 2023-08-04T11:40:19,075 check.warn(importable) 2023-08-04T11:40:19,076 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.db' is absent from the `packages` configuration. 2023-08-04T11:40:19,076 !! 2023-08-04T11:40:19,077 ******************************************************************************** 2023-08-04T11:40:19,077 ############################ 2023-08-04T11:40:19,077 # Package would be ignored # 2023-08-04T11:40:19,077 ############################ 2023-08-04T11:40:19,078 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package[^1], 2023-08-04T11:40:19,078 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,078 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,079 package, please make sure that 'pyhmmer.tests.data.hmms.db' is explicitly added 2023-08-04T11:40:19,079 to the `packages` configuration field. 2023-08-04T11:40:19,080 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,080 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,080 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,081 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,081 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,082 If you don't want 'pyhmmer.tests.data.hmms.db' to be distributed and are 2023-08-04T11:40:19,082 already explicitly excluding 'pyhmmer.tests.data.hmms.db' via 2023-08-04T11:40:19,082 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,083 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,083 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,083 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,084 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,085 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,085 even if it does not contain any `.py` files. 2023-08-04T11:40:19,085 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,086 directory, all directories are treated like packages. 2023-08-04T11:40:19,086 ******************************************************************************** 2023-08-04T11:40:19,087 !! 2023-08-04T11:40:19,087 check.warn(importable) 2023-08-04T11:40:19,087 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.txt' is absent from the `packages` configuration. 2023-08-04T11:40:19,087 !! 2023-08-04T11:40:19,088 ******************************************************************************** 2023-08-04T11:40:19,088 ############################ 2023-08-04T11:40:19,089 # Package would be ignored # 2023-08-04T11:40:19,089 ############################ 2023-08-04T11:40:19,089 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package[^1], 2023-08-04T11:40:19,090 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,090 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,090 package, please make sure that 'pyhmmer.tests.data.hmms.txt' is explicitly added 2023-08-04T11:40:19,091 to the `packages` configuration field. 2023-08-04T11:40:19,091 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,092 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,092 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,093 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,093 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,094 If you don't want 'pyhmmer.tests.data.hmms.txt' to be distributed and are 2023-08-04T11:40:19,094 already explicitly excluding 'pyhmmer.tests.data.hmms.txt' via 2023-08-04T11:40:19,094 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,095 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,095 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,095 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,097 even if it does not contain any `.py` files. 2023-08-04T11:40:19,097 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,098 directory, all directories are treated like packages. 2023-08-04T11:40:19,098 ******************************************************************************** 2023-08-04T11:40:19,098 !! 2023-08-04T11:40:19,099 check.warn(importable) 2023-08-04T11:40:19,099 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.txt2' is absent from the `packages` configuration. 2023-08-04T11:40:19,099 !! 2023-08-04T11:40:19,100 ******************************************************************************** 2023-08-04T11:40:19,100 ############################ 2023-08-04T11:40:19,100 # Package would be ignored # 2023-08-04T11:40:19,101 ############################ 2023-08-04T11:40:19,101 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package[^1], 2023-08-04T11:40:19,101 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,102 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,102 package, please make sure that 'pyhmmer.tests.data.hmms.txt2' is explicitly added 2023-08-04T11:40:19,102 to the `packages` configuration field. 2023-08-04T11:40:19,103 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,104 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,104 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,105 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,105 If you don't want 'pyhmmer.tests.data.hmms.txt2' to be distributed and are 2023-08-04T11:40:19,105 already explicitly excluding 'pyhmmer.tests.data.hmms.txt2' via 2023-08-04T11:40:19,106 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,106 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,106 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,107 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,108 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,109 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,109 even if it does not contain any `.py` files. 2023-08-04T11:40:19,109 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,110 directory, all directories are treated like packages. 2023-08-04T11:40:19,110 ******************************************************************************** 2023-08-04T11:40:19,111 !! 2023-08-04T11:40:19,111 check.warn(importable) 2023-08-04T11:40:19,112 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.jackhmmer' is absent from the `packages` configuration. 2023-08-04T11:40:19,112 !! 2023-08-04T11:40:19,113 ******************************************************************************** 2023-08-04T11:40:19,113 ############################ 2023-08-04T11:40:19,113 # Package would be ignored # 2023-08-04T11:40:19,114 ############################ 2023-08-04T11:40:19,114 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package[^1], 2023-08-04T11:40:19,114 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,115 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,115 package, please make sure that 'pyhmmer.tests.data.jackhmmer' is explicitly added 2023-08-04T11:40:19,116 to the `packages` configuration field. 2023-08-04T11:40:19,116 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,117 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,117 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,118 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,118 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,119 If you don't want 'pyhmmer.tests.data.jackhmmer' to be distributed and are 2023-08-04T11:40:19,119 already explicitly excluding 'pyhmmer.tests.data.jackhmmer' via 2023-08-04T11:40:19,120 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,120 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,120 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,121 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,122 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,123 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,123 even if it does not contain any `.py` files. 2023-08-04T11:40:19,124 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,124 directory, all directories are treated like packages. 2023-08-04T11:40:19,124 ******************************************************************************** 2023-08-04T11:40:19,125 !! 2023-08-04T11:40:19,125 check.warn(importable) 2023-08-04T11:40:19,125 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.msa' is absent from the `packages` configuration. 2023-08-04T11:40:19,126 !! 2023-08-04T11:40:19,126 ******************************************************************************** 2023-08-04T11:40:19,127 ############################ 2023-08-04T11:40:19,127 # Package would be ignored # 2023-08-04T11:40:19,128 ############################ 2023-08-04T11:40:19,128 Python recognizes 'pyhmmer.tests.data.msa' as an importable package[^1], 2023-08-04T11:40:19,129 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,129 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,129 package, please make sure that 'pyhmmer.tests.data.msa' is explicitly added 2023-08-04T11:40:19,130 to the `packages` configuration field. 2023-08-04T11:40:19,130 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,131 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,131 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,132 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,133 If you don't want 'pyhmmer.tests.data.msa' to be distributed and are 2023-08-04T11:40:19,134 already explicitly excluding 'pyhmmer.tests.data.msa' via 2023-08-04T11:40:19,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,135 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,135 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,137 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,137 even if it does not contain any `.py` files. 2023-08-04T11:40:19,137 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,138 directory, all directories are treated like packages. 2023-08-04T11:40:19,138 ******************************************************************************** 2023-08-04T11:40:19,139 !! 2023-08-04T11:40:19,139 check.warn(importable) 2023-08-04T11:40:19,139 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.seqs' is absent from the `packages` configuration. 2023-08-04T11:40:19,140 !! 2023-08-04T11:40:19,140 ******************************************************************************** 2023-08-04T11:40:19,140 ############################ 2023-08-04T11:40:19,141 # Package would be ignored # 2023-08-04T11:40:19,141 ############################ 2023-08-04T11:40:19,141 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package[^1], 2023-08-04T11:40:19,142 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,142 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,143 package, please make sure that 'pyhmmer.tests.data.seqs' is explicitly added 2023-08-04T11:40:19,143 to the `packages` configuration field. 2023-08-04T11:40:19,144 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,144 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,145 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,145 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,146 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,146 If you don't want 'pyhmmer.tests.data.seqs' to be distributed and are 2023-08-04T11:40:19,147 already explicitly excluding 'pyhmmer.tests.data.seqs' via 2023-08-04T11:40:19,147 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,147 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,148 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,148 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,149 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,150 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,150 even if it does not contain any `.py` files. 2023-08-04T11:40:19,150 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,151 directory, all directories are treated like packages. 2023-08-04T11:40:19,151 ******************************************************************************** 2023-08-04T11:40:19,152 !! 2023-08-04T11:40:19,152 check.warn(importable) 2023-08-04T11:40:19,152 /tmp/pip-build-env-n8y6cy4k/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.tables' is absent from the `packages` configuration. 2023-08-04T11:40:19,153 !! 2023-08-04T11:40:19,153 ******************************************************************************** 2023-08-04T11:40:19,154 ############################ 2023-08-04T11:40:19,154 # Package would be ignored # 2023-08-04T11:40:19,154 ############################ 2023-08-04T11:40:19,155 Python recognizes 'pyhmmer.tests.data.tables' as an importable package[^1], 2023-08-04T11:40:19,155 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:40:19,156 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:40:19,156 package, please make sure that 'pyhmmer.tests.data.tables' is explicitly added 2023-08-04T11:40:19,156 to the `packages` configuration field. 2023-08-04T11:40:19,157 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:40:19,157 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:40:19,158 instead of `find_packages(...)`/`find:`). 2023-08-04T11:40:19,158 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:40:19,159 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:40:19,159 If you don't want 'pyhmmer.tests.data.tables' to be distributed and are 2023-08-04T11:40:19,160 already explicitly excluding 'pyhmmer.tests.data.tables' via 2023-08-04T11:40:19,160 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:40:19,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:40:19,161 combination with a more fine grained `package-data` configuration. 2023-08-04T11:40:19,162 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:40:19,162 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:40:19,163 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:40:19,164 even if it does not contain any `.py` files. 2023-08-04T11:40:19,164 On the other hand, currently there is no concept of package data 2023-08-04T11:40:19,164 directory, all directories are treated like packages. 2023-08-04T11:40:19,164 ******************************************************************************** 2023-08-04T11:40:19,165 !! 2023-08-04T11:40:19,165 check.warn(importable) 2023-08-04T11:40:19,166 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,166 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,166 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,167 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,167 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,167 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,168 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,168 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,168 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,170 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,175 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,182 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,203 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-04T11:40:19,206 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-04T11:40:19,207 copying pyhmmer/fileobj/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-04T11:40:19,211 copying pyhmmer/fileobj/bsd.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-04T11:40:19,216 copying pyhmmer/fileobj/bsd.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-04T11:40:19,220 copying pyhmmer/fileobj/linux.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-04T11:40:19,224 copying pyhmmer/fileobj/linux.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-04T11:40:19,228 copying pyhmmer/fileobj/util.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-04T11:40:19,232 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-04T11:40:19,234 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-04T11:40:19,237 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-04T11:40:19,242 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-04T11:40:19,246 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-04T11:40:19,250 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-04T11:40:19,254 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-04T11:40:19,258 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-04T11:40:19,262 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-04T11:40:19,266 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2023-08-04T11:40:19,268 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2023-08-04T11:40:19,272 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2023-08-04T11:40:19,274 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2023-08-04T11:40:19,278 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-04T11:40:19,280 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-04T11:40:19,286 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-04T11:40:19,294 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-04T11:40:19,301 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-04T11:40:19,429 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,431 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,440 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,445 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,449 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,456 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,463 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,474 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,479 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,483 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,491 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,500 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,511 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,517 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,521 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,528 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,536 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,795 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,847 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,851 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:19,978 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-04T11:40:20,124 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-04T11:40:20,125 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-04T11:40:20,145 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-04T11:40:20,161 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-04T11:40:20,174 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-04T11:40:20,187 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-04T11:40:20,203 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-04T11:40:20,227 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-04T11:40:20,530 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:40:20,532 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:40:20,540 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:40:20,551 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:40:20,561 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:40:20,746 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,748 copying pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,753 copying pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,758 copying pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,764 copying pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,769 copying pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,775 copying pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,781 copying pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,787 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,791 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,795 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-04T11:40:20,800 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-04T11:40:20,801 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-04T11:40:20,806 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-04T11:40:20,811 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-04T11:40:20,816 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-04T11:40:20,821 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-04T11:40:20,823 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-04T11:40:20,866 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-04T11:40:20,880 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-04T11:40:21,098 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-04T11:40:21,109 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-04T11:40:21,115 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-04T11:40:21,120 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-04T11:40:21,124 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,126 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,132 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,137 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,142 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,146 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,150 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,155 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,163 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,169 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-04T11:40:21,184 running build_clib 2023-08-04T11:40:21,202 creating build/temp.linux-armv7l-cpython-37 2023-08-04T11:40:21,203 generating "divsufsort.h" for divsufsort library 2023-08-04T11:40:21,204 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2023-08-04T11:40:21,208 generating "esl_config.h" for easel library 2023-08-04T11:40:21,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdio_h.c -o build/temp.linux-armv7l-cpython-37/have_stdio_h.o 2023-08-04T11:40:21,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-37/have_stdlib_h.o 2023-08-04T11:40:21,662 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_string_h.c -o build/temp.linux-armv7l-cpython-37/have_string_h.o 2023-08-04T11:40:21,843 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2023-08-04T11:40:22,027 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2023-08-04T11:40:22,207 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strings_h.c -o build/temp.linux-armv7l-cpython-37/have_strings_h.o 2023-08-04T11:40:22,379 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_stat_h.o 2023-08-04T11:40:22,560 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2023-08-04T11:40:22,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2023-08-04T11:40:22,952 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2023-08-04T11:40:23,128 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2023-08-04T11:40:23,374 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2023-08-04T11:40:23,625 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2023-08-04T11:40:23,820 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -Wno-all 2023-08-04T11:40:24,065 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.bin 2023-08-04T11:40:24,695 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2023-08-04T11:40:24,955 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2023-08-04T11:40:25,582 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2023-08-04T11:40:25,803 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2023-08-04T11:40:26,438 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -Wno-all 2023-08-04T11:40:26,678 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.bin 2023-08-04T11:40:27,306 /usr/bin/ld: /tmp/ccixogHa.ltrans0.ltrans.o: in function `main': 2023-08-04T11:40:27,306 :(.text.startup+0xc): undefined reference to `_mm_malloc' 2023-08-04T11:40:27,307 collect2: error: ld returned 1 exit status 2023-08-04T11:40:27,318 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2023-08-04T11:40:27,555 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2023-08-04T11:40:28,191 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -Wno-all 2023-08-04T11:40:28,453 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.bin 2023-08-04T11:40:29,090 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2023-08-04T11:40:29,294 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2023-08-04T11:40:29,924 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2023-08-04T11:40:30,137 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2023-08-04T11:40:30,768 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2023-08-04T11:40:30,995 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2023-08-04T11:40:31,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2023-08-04T11:40:31,880 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2023-08-04T11:40:32,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2023-08-04T11:40:32,725 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2023-08-04T11:40:33,360 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fseeko.c -o build/temp.linux-armv7l-cpython-37/have_fseeko.o -Wno-all 2023-08-04T11:40:33,597 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fseeko.o -o build/temp.linux-armv7l-cpython-37/have_fseeko.bin 2023-08-04T11:40:34,224 generating "p7_config.h" for hmmer library 2023-08-04T11:40:34,227 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2023-08-04T11:40:34,404 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2023-08-04T11:40:34,587 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2023-08-04T11:40:34,765 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2023-08-04T11:40:34,957 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2023-08-04T11:40:35,156 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2023-08-04T11:40:35,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2023-08-04T11:40:35,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2023-08-04T11:40:35,827 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_mkstemp.c -o build/temp.linux-armv7l-cpython-37/have_mkstemp.o -Wno-all 2023-08-04T11:40:36,075 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_mkstemp.o -o build/temp.linux-armv7l-cpython-37/have_mkstemp.bin 2023-08-04T11:40:36,702 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2023-08-04T11:40:36,933 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2023-08-04T11:40:37,574 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_putenv.c -o build/temp.linux-armv7l-cpython-37/have_putenv.o -Wno-all 2023-08-04T11:40:37,823 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_putenv.o -o build/temp.linux-armv7l-cpython-37/have_putenv.bin 2023-08-04T11:40:38,445 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2023-08-04T11:40:38,647 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2023-08-04T11:40:39,286 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2023-08-04T11:40:39,495 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2023-08-04T11:40:40,130 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2023-08-04T11:40:40,335 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2023-08-04T11:40:40,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2023-08-04T11:40:41,195 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2023-08-04T11:40:41,825 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2023-08-04T11:40:42,077 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2023-08-04T11:40:42,725 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2023-08-04T11:40:42,946 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2023-08-04T11:40:43,579 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getcwd.c -o build/temp.linux-armv7l-cpython-37/have_getcwd.o -Wno-all 2023-08-04T11:40:43,802 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getcwd.o -o build/temp.linux-armv7l-cpython-37/have_getcwd.bin 2023-08-04T11:40:44,434 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_chmod.c -o build/temp.linux-armv7l-cpython-37/have_chmod.o -Wno-all 2023-08-04T11:40:44,647 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_chmod.o -o build/temp.linux-armv7l-cpython-37/have_chmod.bin 2023-08-04T11:40:45,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stat.c -o build/temp.linux-armv7l-cpython-37/have_stat.o -Wno-all 2023-08-04T11:40:45,508 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_stat.o -o build/temp.linux-armv7l-cpython-37/have_stat.bin 2023-08-04T11:40:46,141 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fstat.c -o build/temp.linux-armv7l-cpython-37/have_fstat.o -Wno-all 2023-08-04T11:40:46,364 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fstat.o -o build/temp.linux-armv7l-cpython-37/have_fstat.bin 2023-08-04T11:40:46,995 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2023-08-04T11:40:47,255 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2023-08-04T11:40:47,881 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2023-08-04T11:40:47,906 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2023-08-04T11:40:47,931 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2023-08-04T11:40:47,946 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2023-08-04T11:40:47,947 creating build/temp.linux-armv7l-cpython-37/vendor 2023-08-04T11:40:47,948 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2023-08-04T11:40:47,950 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2023-08-04T11:40:47,952 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2023-08-04T11:40:56,974 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2023-08-04T11:40:57,038 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_threads.c, vendor/easel/esl_huffman.c, vendor/easel/esl_exponential.c, vendor/easel/esl_random.c, vendor/easel/esl_graph.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_gencode.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_msafile.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_gumbel.c, vendor/easel/interface_lapack.c, vendor/easel/esl_arr2.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_tree.c, vendor/easel/esl_stats.c, vendor/easel/esl_wuss.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_quicksort.c, vendor/easel/interface_gsl.c, vendor/easel/esl_cpu.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_rand64.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_normal.c, vendor/easel/esl_sse.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_gev.c, vendor/easel/esl_distance.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_alloc.c, vendor/easel/esl_sq.c, vendor/easel/easel.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_regexp.c, vendor/easel/esl_gamma.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_heap.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_neon.c, vendor/easel/esl_avx.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_weibull.c, vendor/easel/esl_buffer.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_composition.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_cluster.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_red_black.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_mem.c, vendor/easel/esl_stack.c, vendor/easel/esl_varint.c, vendor/easel/esl_getopts.c, vendor/easel/esl_recorder.c, vendor/easel/esl_arr3.c, vendor/easel/esl_mpi.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_sqio.c, vendor/easel/esl_avx512.c, vendor/easel/esl_ssi.c, vendor/easel/esl_paml.c, vendor/easel/esl_json.c, vendor/easel/esl_swat.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_msa.c, vendor/easel/esl_hmm.c, vendor/easel/esl_histogram.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_vmx.c, vendor/easel/esl_keyhash.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2023-08-04T11:40:57,046 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2023-08-04T11:40:57,047 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2023-08-04T11:40:57,048 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2023-08-04T11:40:57,049 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2023-08-04T11:40:57,050 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-08-04T11:40:57,051 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-08-04T11:40:57,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2023-08-04T11:40:57,063 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2023-08-04T11:40:57,065 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2023-08-04T11:40:57,091 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2023-08-04T11:40:57,263 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2023-08-04T11:40:57,265 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2023-08-04T11:40:57,281 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2023-08-04T11:40:57,286 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2023-08-04T11:40:57,792 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2023-08-04T11:40:57,794 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2023-08-04T11:40:58,892 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2023-08-04T11:40:58,894 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2023-08-04T11:40:58,949 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2023-08-04T11:40:58,952 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2023-08-04T11:40:59,191 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2023-08-04T11:40:59,192 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2023-08-04T11:40:59,656 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2023-08-04T11:40:59,657 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:40:59,658 return status; 2023-08-04T11:40:59,658 ^~~~~~ 2023-08-04T11:40:59,896 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2023-08-04T11:40:59,898 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2023-08-04T11:41:00,232 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2023-08-04T11:41:00,235 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2023-08-04T11:41:00,632 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2023-08-04T11:41:00,633 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-04T11:41:00,633 for (i = 0; i < a; i++) 2023-08-04T11:41:00,634 ^ 2023-08-04T11:41:00,762 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2023-08-04T11:41:00,763 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:41:00,764 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2023-08-04T11:41:00,764 ^ 2023-08-04T11:41:00,765 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2023-08-04T11:41:00,765 char *p; 2023-08-04T11:41:00,766 ^ 2023-08-04T11:41:01,301 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2023-08-04T11:41:01,302 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2023-08-04T11:41:02,169 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2023-08-04T11:41:02,172 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2023-08-04T11:41:02,938 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2023-08-04T11:41:02,942 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2023-08-04T11:41:03,035 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2023-08-04T11:41:03,038 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2023-08-04T11:41:03,470 In file included from vendor/easel/esl_msafile2.c:26: 2023-08-04T11:41:03,471 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2023-08-04T11:41:03,474 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:03,474 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:41:03,475 ^ 2023-08-04T11:41:03,475 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:41:03,476 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-08-04T11:41:03,476 ^~~~~~~ 2023-08-04T11:41:03,478 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:41:03,478 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:41:03,479 ^~~ 2023-08-04T11:41:03,479 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:41:03,480 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-08-04T11:41:03,480 ^~~~~~~ 2023-08-04T11:41:03,484 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:03,485 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:41:03,485 ^ 2023-08-04T11:41:03,486 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:41:03,486 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-08-04T11:41:03,487 ^~~~~~~ 2023-08-04T11:41:03,488 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:41:03,488 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:41:03,489 ^~~ 2023-08-04T11:41:03,489 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:41:03,489 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-08-04T11:41:03,490 ^~~~~~~ 2023-08-04T11:41:03,542 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2023-08-04T11:41:03,545 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2023-08-04T11:41:03,603 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2023-08-04T11:41:03,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2023-08-04T11:41:03,626 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2023-08-04T11:41:03,629 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2023-08-04T11:41:03,744 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2023-08-04T11:41:03,746 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2023-08-04T11:41:04,352 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2023-08-04T11:41:04,354 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2023-08-04T11:41:04,544 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2023-08-04T11:41:04,546 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2023-08-04T11:41:05,012 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2023-08-04T11:41:05,014 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2023-08-04T11:41:06,168 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2023-08-04T11:41:06,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2023-08-04T11:41:06,444 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2023-08-04T11:41:06,446 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2023-08-04T11:41:06,662 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2023-08-04T11:41:06,663 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:06,663 if (alphatype != dd->abc_r->type) 2023-08-04T11:41:06,664 ^~ 2023-08-04T11:41:06,684 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2023-08-04T11:41:06,684 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:06,685 if (sq->n > max_seqlen) max_seqlen = sq->n; 2023-08-04T11:41:06,685 ^ 2023-08-04T11:41:06,686 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:06,687 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2023-08-04T11:41:06,687 ^ 2023-08-04T11:41:06,688 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:06,688 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2023-08-04T11:41:06,689 ^ 2023-08-04T11:41:06,689 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:06,690 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2023-08-04T11:41:06,690 ^ 2023-08-04T11:41:06,694 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:06,694 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2023-08-04T11:41:06,695 ^~ 2023-08-04T11:41:06,695 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:06,696 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2023-08-04T11:41:06,696 ^~ 2023-08-04T11:41:06,697 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:06,697 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2023-08-04T11:41:06,698 ^~ 2023-08-04T11:41:06,698 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:06,699 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2023-08-04T11:41:06,699 ^~ 2023-08-04T11:41:06,773 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2023-08-04T11:41:06,774 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-08-04T11:41:06,774 } 2023-08-04T11:41:06,775 ^ 2023-08-04T11:41:06,789 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2023-08-04T11:41:06,789 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-08-04T11:41:06,790 } 2023-08-04T11:41:06,791 ^ 2023-08-04T11:41:07,793 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2023-08-04T11:41:07,795 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2023-08-04T11:41:08,039 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2023-08-04T11:41:08,041 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2023-08-04T11:41:08,630 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2023-08-04T11:41:08,632 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2023-08-04T11:41:09,162 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2023-08-04T11:41:09,164 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2023-08-04T11:41:09,219 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2023-08-04T11:41:09,221 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2023-08-04T11:41:09,385 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2023-08-04T11:41:09,388 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2023-08-04T11:41:09,696 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2023-08-04T11:41:09,698 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2023-08-04T11:41:09,793 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2023-08-04T11:41:09,794 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:09,795 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2023-08-04T11:41:09,795 ^~ 2023-08-04T11:41:10,146 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2023-08-04T11:41:10,146 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-08-04T11:41:10,147 for (pos = 0; pos < sq->n; pos++) 2023-08-04T11:41:10,147 ^ 2023-08-04T11:41:10,148 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-08-04T11:41:10,149 for (pos = 1; pos <= sq->n; pos++) 2023-08-04T11:41:10,149 ^~ 2023-08-04T11:41:11,119 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2023-08-04T11:41:11,121 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2023-08-04T11:41:11,454 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2023-08-04T11:41:11,458 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2023-08-04T11:41:12,828 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2023-08-04T11:41:12,831 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2023-08-04T11:41:14,391 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2023-08-04T11:41:14,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2023-08-04T11:41:14,770 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2023-08-04T11:41:14,771 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,771 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2023-08-04T11:41:14,772 ^~ 2023-08-04T11:41:14,774 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,775 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-08-04T11:41:14,776 ^~ 2023-08-04T11:41:14,778 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,779 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-08-04T11:41:14,779 ^~ 2023-08-04T11:41:14,805 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2023-08-04T11:41:14,806 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,807 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:41:14,807 ^~ 2023-08-04T11:41:14,811 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2023-08-04T11:41:14,812 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,812 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:41:14,813 ^~ 2023-08-04T11:41:14,816 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2023-08-04T11:41:14,817 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,817 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:41:14,818 ^~ 2023-08-04T11:41:14,825 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2023-08-04T11:41:14,826 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,826 if (status != eslOK || nres != W) { 2023-08-04T11:41:14,827 ^~ 2023-08-04T11:41:14,830 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,831 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:41:14,831 ^~ 2023-08-04T11:41:14,855 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2023-08-04T11:41:14,856 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,857 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2023-08-04T11:41:14,857 ^ 2023-08-04T11:41:14,865 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,866 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2023-08-04T11:41:14,866 ^~ 2023-08-04T11:41:14,869 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2023-08-04T11:41:14,871 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,871 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2023-08-04T11:41:14,872 ^ 2023-08-04T11:41:14,874 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,875 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-04T11:41:14,875 ^~ 2023-08-04T11:41:14,877 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,877 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-04T11:41:14,878 ^ 2023-08-04T11:41:14,879 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,880 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-04T11:41:14,880 ^ 2023-08-04T11:41:14,882 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,883 if (inx < volume->start_seq || inx > volume->end_seq) { 2023-08-04T11:41:14,883 ^ 2023-08-04T11:41:14,885 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,886 if (inx < volume->start_seq || inx > volume->end_seq) { 2023-08-04T11:41:14,886 ^ 2023-08-04T11:41:14,901 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,902 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2023-08-04T11:41:14,902 ^ 2023-08-04T11:41:14,903 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,903 if (inx < volume->end_seq) break; 2023-08-04T11:41:14,904 ^ 2023-08-04T11:41:14,904 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,905 if (cnt >= ncbi->volumes) return eslFAIL; 2023-08-04T11:41:14,905 ^~ 2023-08-04T11:41:14,906 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,906 if (ncbi->index_start == -1 || inx > end) { 2023-08-04T11:41:14,907 ^~ 2023-08-04T11:41:14,907 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,908 if (ncbi->index_start == -1 || inx > end) { 2023-08-04T11:41:14,908 ^ 2023-08-04T11:41:14,909 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,909 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-04T11:41:14,910 ^~ 2023-08-04T11:41:14,910 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,911 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-04T11:41:14,911 ^~ 2023-08-04T11:41:14,912 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,912 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-04T11:41:14,913 ^~ 2023-08-04T11:41:14,913 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2023-08-04T11:41:14,914 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,914 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:41:14,915 ^~ 2023-08-04T11:41:14,918 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,918 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-04T11:41:14,919 ^~ 2023-08-04T11:41:14,922 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,922 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-04T11:41:14,923 ^~ 2023-08-04T11:41:14,926 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2023-08-04T11:41:14,927 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,928 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:41:14,928 ^~ 2023-08-04T11:41:14,932 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,932 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-04T11:41:14,933 ^~ 2023-08-04T11:41:14,942 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,943 if (ncbi->seq_apos - sq->doff < size) { 2023-08-04T11:41:14,943 ^ 2023-08-04T11:41:14,950 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2023-08-04T11:41:14,951 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,952 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:41:14,953 ^~ 2023-08-04T11:41:14,959 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,959 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-04T11:41:14,960 ^~ 2023-08-04T11:41:14,972 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2023-08-04T11:41:14,974 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:14,974 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:41:14,975 ^~ 2023-08-04T11:41:14,983 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:14,984 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2023-08-04T11:41:14,984 ^~ 2023-08-04T11:41:14,999 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2023-08-04T11:41:15,000 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:15,001 for (x = 0; x < strlen(ncbisym); ++x) { 2023-08-04T11:41:15,002 ^ 2023-08-04T11:41:15,003 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:15,004 for (y = 0; y < strlen(abc->sym); ++y) { 2023-08-04T11:41:15,004 ^ 2023-08-04T11:41:15,007 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:15,007 if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-08-04T11:41:15,008 ^~ 2023-08-04T11:41:15,013 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2023-08-04T11:41:15,014 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:15,015 for (x = 0; x < strlen(ncbisym); ++x) { 2023-08-04T11:41:15,015 ^ 2023-08-04T11:41:15,017 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:15,017 for (y = 0; y < strlen(abc->sym); ++y) { 2023-08-04T11:41:15,018 ^ 2023-08-04T11:41:15,020 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:15,020 if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-08-04T11:41:15,021 ^~ 2023-08-04T11:41:15,031 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2023-08-04T11:41:15,032 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:15,033 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2023-08-04T11:41:15,033 ^~ 2023-08-04T11:41:15,681 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2023-08-04T11:41:15,682 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2023-08-04T11:41:15,873 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2023-08-04T11:41:15,878 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2023-08-04T11:41:16,261 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2023-08-04T11:41:16,263 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2023-08-04T11:41:16,387 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2023-08-04T11:41:16,389 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:41:16,389 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2023-08-04T11:41:16,390 ^~~~~~~~~~~~~~~~ 2023-08-04T11:41:16,513 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-08-04T11:41:16,514 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:41:16,515 if (opt_fx) *opt_fx = fx; 2023-08-04T11:41:16,515 ~~~~~~~~^~~~ 2023-08-04T11:41:16,516 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:41:16,516 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2023-08-04T11:41:16,517 ~~^~~ 2023-08-04T11:41:16,517 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2023-08-04T11:41:16,518 double ax,bx,cx; 2023-08-04T11:41:16,518 ^~ 2023-08-04T11:41:16,519 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:41:16,519 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2023-08-04T11:41:16,520 ~^~~~~~~~~~~~~ 2023-08-04T11:41:16,520 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2023-08-04T11:41:16,521 double ax,bx,cx; 2023-08-04T11:41:16,522 ^~ 2023-08-04T11:41:17,694 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2023-08-04T11:41:17,696 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2023-08-04T11:41:18,037 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2023-08-04T11:41:18,039 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2023-08-04T11:41:19,413 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2023-08-04T11:41:19,415 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2023-08-04T11:41:20,131 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2023-08-04T11:41:20,133 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2023-08-04T11:41:20,331 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2023-08-04T11:41:20,333 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2023-08-04T11:41:20,349 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2023-08-04T11:41:20,352 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2023-08-04T11:41:20,610 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2023-08-04T11:41:20,613 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2023-08-04T11:41:22,010 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2023-08-04T11:41:22,012 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2023-08-04T11:41:22,385 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2023-08-04T11:41:22,388 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:22,389 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2023-08-04T11:41:22,389 ^~ 2023-08-04T11:41:23,561 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2023-08-04T11:41:23,563 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2023-08-04T11:41:24,432 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2023-08-04T11:41:24,434 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2023-08-04T11:41:24,707 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2023-08-04T11:41:24,709 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2023-08-04T11:41:24,805 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2023-08-04T11:41:24,807 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2023-08-04T11:41:26,077 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2023-08-04T11:41:26,078 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2023-08-04T11:41:26,246 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2023-08-04T11:41:26,247 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2023-08-04T11:41:27,777 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2023-08-04T11:41:27,778 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:41:27,778 int flags; 2023-08-04T11:41:27,779 ^~~~~ 2023-08-04T11:41:28,174 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2023-08-04T11:41:28,176 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2023-08-04T11:41:28,421 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2023-08-04T11:41:28,423 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2023-08-04T11:41:28,448 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2023-08-04T11:41:28,451 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2023-08-04T11:41:28,659 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2023-08-04T11:41:28,661 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:28,662 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2023-08-04T11:41:28,662 ^~ 2023-08-04T11:41:29,376 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2023-08-04T11:41:29,379 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2023-08-04T11:41:30,111 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2023-08-04T11:41:30,111 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2023-08-04T11:41:31,571 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2023-08-04T11:41:31,571 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2023-08-04T11:41:31,941 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2023-08-04T11:41:31,942 static double stopwatch_getRealTime(void); 2023-08-04T11:41:31,942 ^~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:32,324 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2023-08-04T11:41:32,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2023-08-04T11:41:32,328 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2023-08-04T11:41:32,342 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2023-08-04T11:41:32,463 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2023-08-04T11:41:32,466 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2023-08-04T11:41:32,723 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2023-08-04T11:41:32,726 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2023-08-04T11:41:33,302 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2023-08-04T11:41:33,305 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2023-08-04T11:41:33,354 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2023-08-04T11:41:33,358 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2023-08-04T11:41:33,627 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2023-08-04T11:41:33,630 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2023-08-04T11:41:33,751 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2023-08-04T11:41:33,751 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2023-08-04T11:41:33,993 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2023-08-04T11:41:33,994 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:33,994 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2023-08-04T11:41:33,995 ^~ 2023-08-04T11:41:34,017 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2023-08-04T11:41:34,018 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,018 if ((n+1) > ns->flen) ns->flen = n+1; 2023-08-04T11:41:34,019 ^ 2023-08-04T11:41:34,026 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2023-08-04T11:41:34,026 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,027 if (n > ns->plen) ns->plen = n; 2023-08-04T11:41:34,027 ^ 2023-08-04T11:41:34,030 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,030 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2023-08-04T11:41:34,031 ^ 2023-08-04T11:41:34,032 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2023-08-04T11:41:34,033 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,033 if (n > ns->slen) ns->slen = n; 2023-08-04T11:41:34,034 ^ 2023-08-04T11:41:34,036 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,037 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2023-08-04T11:41:34,037 ^ 2023-08-04T11:41:34,048 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2023-08-04T11:41:34,049 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,050 for (i = 0; i < ns->nprimary; i++) 2023-08-04T11:41:34,050 ^ 2023-08-04T11:41:34,052 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,052 for (i = 0; i < ns->nprimary; i++) 2023-08-04T11:41:34,053 ^ 2023-08-04T11:41:34,054 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,055 for (i = 0; i < ns->nsecondary; i++) 2023-08-04T11:41:34,055 ^ 2023-08-04T11:41:34,057 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,057 for (i = 0; i < ns->nsecondary; i++) 2023-08-04T11:41:34,058 ^ 2023-08-04T11:41:34,065 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2023-08-04T11:41:34,066 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,067 for (i = 0; i < ns->nprimary; i++) 2023-08-04T11:41:34,067 ^ 2023-08-04T11:41:34,068 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,068 for (i = 0; i < ns->nsecondary; i++) 2023-08-04T11:41:34,069 ^ 2023-08-04T11:41:34,079 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2023-08-04T11:41:34,080 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,081 for (i = 0; i < ns->nprimary; i++) { 2023-08-04T11:41:34,082 ^ 2023-08-04T11:41:34,082 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,083 for (i = 0; i < ns->nsecondary; i++) 2023-08-04T11:41:34,083 ^ 2023-08-04T11:41:34,084 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,085 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2023-08-04T11:41:34,085 ^ 2023-08-04T11:41:34,086 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,086 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2023-08-04T11:41:34,087 ^ 2023-08-04T11:41:34,087 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:34,088 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2023-08-04T11:41:34,088 ^ 2023-08-04T11:41:34,326 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2023-08-04T11:41:34,328 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2023-08-04T11:41:34,740 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2023-08-04T11:41:34,743 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2023-08-04T11:41:35,061 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2023-08-04T11:41:35,062 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2023-08-04T11:41:35,352 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2023-08-04T11:41:35,354 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2023-08-04T11:41:36,316 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2023-08-04T11:41:36,319 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2023-08-04T11:41:36,621 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2023-08-04T11:41:36,624 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2023-08-04T11:41:37,342 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2023-08-04T11:41:37,343 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:41:37,344 if (grp & cmask) { status = eslEOD; goto ERROR; } 2023-08-04T11:41:37,344 ~~~~^~~~~~~ 2023-08-04T11:41:37,414 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2023-08-04T11:41:37,417 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2023-08-04T11:41:37,608 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2023-08-04T11:41:37,611 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2023-08-04T11:41:37,696 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2023-08-04T11:41:37,698 creating build/temp.linux-armv7l-cpython-37/build 2023-08-04T11:41:37,699 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2023-08-04T11:41:37,701 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2023-08-04T11:41:37,804 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2023-08-04T11:41:37,809 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:37,809 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2023-08-04T11:41:37,810 ^ 2023-08-04T11:41:38,217 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2023-08-04T11:41:38,218 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:38,218 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2023-08-04T11:41:38,218 ^~ 2023-08-04T11:41:38,219 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2023-08-04T11:41:38,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2023-08-04T11:41:38,847 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2023-08-04T11:41:38,849 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2023-08-04T11:41:42,693 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2023-08-04T11:41:42,695 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2023-08-04T11:41:43,421 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2023-08-04T11:41:43,423 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2023-08-04T11:41:47,040 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2023-08-04T11:41:47,041 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2023-08-04T11:41:47,359 In file included from vendor/easel/esl_hmm.c:9: 2023-08-04T11:41:47,359 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2023-08-04T11:41:47,361 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:47,362 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-04T11:41:47,362 ^ 2023-08-04T11:41:47,362 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-08-04T11:41:47,363 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-08-04T11:41:47,363 ^~~~~~~ 2023-08-04T11:41:47,363 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:41:47,364 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-04T11:41:47,364 ^~~ 2023-08-04T11:41:47,364 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-08-04T11:41:47,365 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-08-04T11:41:47,365 ^~~~~~~ 2023-08-04T11:41:48,977 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2023-08-04T11:41:48,977 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2023-08-04T11:41:49,289 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2023-08-04T11:41:49,289 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:49,290 if (rank > h->n) 2023-08-04T11:41:49,290 ^ 2023-08-04T11:41:51,901 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2023-08-04T11:41:51,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2023-08-04T11:41:53,459 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2023-08-04T11:41:53,461 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2023-08-04T11:41:53,641 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2023-08-04T11:41:53,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2023-08-04T11:41:53,926 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2023-08-04T11:41:53,926 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-08-04T11:41:53,927 for (h = 0; h < kh->hashsize; h++) 2023-08-04T11:41:53,927 ^ 2023-08-04T11:41:53,928 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2023-08-04T11:41:53,929 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:53,929 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-04T11:41:53,929 ^ 2023-08-04T11:41:53,930 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2023-08-04T11:41:53,930 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-08-04T11:41:53,931 for (h = 0; h < kh->hashsize; h++) 2023-08-04T11:41:53,931 ^ 2023-08-04T11:41:53,935 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2023-08-04T11:41:53,936 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:53,936 if (kh->nkeys > 3*kh->hashsize) 2023-08-04T11:41:53,936 ^ 2023-08-04T11:41:53,939 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2023-08-04T11:41:53,939 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:53,940 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-04T11:41:53,940 ^ 2023-08-04T11:41:53,944 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2023-08-04T11:41:53,944 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:53,944 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-04T11:41:53,945 ^ 2023-08-04T11:41:54,913 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2023-08-04T11:41:55,487 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2023-08-04T11:41:55,496 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2023-08-04T11:41:55,497 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2023-08-04T11:41:55,497 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2023-08-04T11:41:55,499 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2023-08-04T11:41:55,499 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2023-08-04T11:41:55,500 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2023-08-04T11:41:55,504 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2023-08-04T11:41:55,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2023-08-04T11:41:55,533 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2023-08-04T11:41:55,535 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2023-08-04T11:41:55,944 In file included from vendor/hmmer/src/generic_msv.c:20: 2023-08-04T11:41:55,944 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:55,945 #error "No vector implementation enabled" 2023-08-04T11:41:55,945 ^~~~~ 2023-08-04T11:41:55,946 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2023-08-04T11:41:55,946 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:55,947 #error "No vector implementation enabled" 2023-08-04T11:41:55,947 ^~~~~ 2023-08-04T11:41:55,948 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:55,948 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:55,949 ^~~~~~ 2023-08-04T11:41:55,949 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:55,950 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:55,951 ^~~~~~ 2023-08-04T11:41:55,951 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:55,952 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:55,952 ^~~~~~ 2023-08-04T11:41:55,953 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:55,954 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:55,954 ^~~~~~ 2023-08-04T11:41:55,955 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:55,955 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:55,956 ^~~~~~~~~~~ 2023-08-04T11:41:55,957 P7_PROFILE 2023-08-04T11:41:55,957 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:55,958 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:55,958 ^~~~~~~~~~~ 2023-08-04T11:41:55,959 P7_PROFILE 2023-08-04T11:41:55,960 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:55,971 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:55,971 ^~~~~~~~~~~ 2023-08-04T11:41:55,972 P7_PROFILE 2023-08-04T11:41:55,973 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:55,973 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:55,974 ^~~~~~~~~~~ 2023-08-04T11:41:55,974 P7_PROFILE 2023-08-04T11:41:55,975 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:55,975 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:55,976 ^~~~~~ 2023-08-04T11:41:55,976 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:55,977 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:55,977 ^~~~~~ 2023-08-04T11:41:55,978 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:55,978 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:55,979 ^~~~~~ 2023-08-04T11:41:55,980 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:55,980 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:55,991 ^~~~~~ 2023-08-04T11:41:55,991 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:55,992 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:55,992 ^~~~~~~~~~~ 2023-08-04T11:41:55,993 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:55,993 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:55,993 ^~~~~~~~~~~ 2023-08-04T11:41:55,994 P7_PROFILE 2023-08-04T11:41:55,994 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:55,995 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:55,996 ^~~~~~~~~~~ 2023-08-04T11:41:55,996 P7_PROFILE 2023-08-04T11:41:55,997 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:55,998 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:55,998 ^~~~~~~~~~~ 2023-08-04T11:41:55,999 P7_PROFILE 2023-08-04T11:41:56,000 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,010 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,011 ^~~~~~~~~~~ 2023-08-04T11:41:56,012 P7_PROFILE 2023-08-04T11:41:56,013 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,013 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,014 ^~~~~~ 2023-08-04T11:41:56,014 P7_GMX 2023-08-04T11:41:56,014 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,015 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:56,015 ^~~~~~~~~~~ 2023-08-04T11:41:56,016 P7_PROFILE 2023-08-04T11:41:56,016 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,017 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,017 ^~~~~~ 2023-08-04T11:41:56,017 P7_GMX 2023-08-04T11:41:56,018 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,019 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:56,019 ^~~~~~~~~~~ 2023-08-04T11:41:56,020 P7_PROFILE 2023-08-04T11:41:56,031 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,031 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,032 ^~~~~~ 2023-08-04T11:41:56,033 P7_GMX 2023-08-04T11:41:56,034 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,034 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:56,035 ^~~~~~~~~~~ 2023-08-04T11:41:56,036 P7_PROFILE 2023-08-04T11:41:56,037 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,037 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,038 ^~~~~~ 2023-08-04T11:41:56,039 P7_GMX 2023-08-04T11:41:56,039 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,040 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:56,040 ^~~~~~~~~~~ 2023-08-04T11:41:56,051 P7_PROFILE 2023-08-04T11:41:56,052 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,052 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:56,053 ^~~~~~~~~~~ 2023-08-04T11:41:56,054 P7_PROFILE 2023-08-04T11:41:56,054 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,055 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:56,056 ^~~~~~~~~~~ 2023-08-04T11:41:56,057 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,058 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:56,058 ^~~~~~~~~~~ 2023-08-04T11:41:56,059 P7_PROFILE 2023-08-04T11:41:56,060 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,071 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:56,072 ^~~~~~~~~~~ 2023-08-04T11:41:56,072 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,073 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:56,073 ^~~~~~~~~~~ 2023-08-04T11:41:56,074 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,074 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:56,075 ^~~~~~~~~~~ 2023-08-04T11:41:56,075 P7_PROFILE 2023-08-04T11:41:56,076 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,077 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:56,077 ^~~~~~~~~~~ 2023-08-04T11:41:56,078 P7_PROFILE 2023-08-04T11:41:56,079 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,080 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:56,091 ^~~~~~~~~~~ 2023-08-04T11:41:56,091 P7_PROFILE 2023-08-04T11:41:56,092 In file included from vendor/hmmer/src/build.c:32: 2023-08-04T11:41:56,093 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:56,094 #error "No vector implementation enabled" 2023-08-04T11:41:56,095 ^~~~~ 2023-08-04T11:41:56,095 In file included from vendor/hmmer/src/errors.c:19: 2023-08-04T11:41:56,096 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:56,097 #error "No vector implementation enabled" 2023-08-04T11:41:56,098 ^~~~~ 2023-08-04T11:41:56,098 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,101 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:56,102 ^~~~~~ 2023-08-04T11:41:56,103 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,103 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:56,103 ^~~~~~ 2023-08-04T11:41:56,104 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,105 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:56,106 ^~~~~~ 2023-08-04T11:41:56,107 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,107 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:56,108 ^~~~~~ 2023-08-04T11:41:56,108 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,108 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:56,109 ^~~~~~ 2023-08-04T11:41:56,109 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,110 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:56,111 ^~~~~~ 2023-08-04T11:41:56,112 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,113 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:56,114 ^~~~~~ 2023-08-04T11:41:56,114 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,115 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:56,115 ^~~~~~ 2023-08-04T11:41:56,116 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,120 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:56,121 ^~~~~~~~~~~ 2023-08-04T11:41:56,121 P7_PROFILE 2023-08-04T11:41:56,122 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,122 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:56,123 ^~~~~~~~~~~ 2023-08-04T11:41:56,123 P7_PROFILE 2023-08-04T11:41:56,124 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,124 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:56,125 ^~~~~~~~~~~ 2023-08-04T11:41:56,125 P7_PROFILE 2023-08-04T11:41:56,126 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,126 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:56,127 ^~~~~~~~~~~ 2023-08-04T11:41:56,127 P7_PROFILE 2023-08-04T11:41:56,128 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,128 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:56,129 ^~~~~~~~~~~ 2023-08-04T11:41:56,129 P7_PROFILE 2023-08-04T11:41:56,130 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,130 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,131 ^~~~~~~~~~~ 2023-08-04T11:41:56,131 P7_PROFILE 2023-08-04T11:41:56,132 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,132 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:56,133 ^~~~~~~~~~~ 2023-08-04T11:41:56,133 P7_PROFILE 2023-08-04T11:41:56,133 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,134 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:56,134 ^~~~~~~~~~~ 2023-08-04T11:41:56,135 P7_PROFILE 2023-08-04T11:41:56,135 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,136 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:56,137 ^~~~~~~~~~~ 2023-08-04T11:41:56,137 P7_PROFILE 2023-08-04T11:41:56,137 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,138 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:56,139 ^~~~~~~~~~~ 2023-08-04T11:41:56,139 P7_PROFILE 2023-08-04T11:41:56,140 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,141 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:56,141 ^~~~~~~~~~~ 2023-08-04T11:41:56,142 P7_PROFILE 2023-08-04T11:41:56,142 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,143 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:56,143 ^~~~~~~~~~~ 2023-08-04T11:41:56,144 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,144 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:56,145 ^~~~~~~~~~~ 2023-08-04T11:41:56,145 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,146 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,146 ^~~~~~ 2023-08-04T11:41:56,146 P7_GMX 2023-08-04T11:41:56,147 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,147 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,148 ^~~~~~ 2023-08-04T11:41:56,148 P7_GMX 2023-08-04T11:41:56,149 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,150 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:56,151 ^~~~~~~~~~~ 2023-08-04T11:41:56,152 P7_PROFILE 2023-08-04T11:41:56,152 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,153 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:56,153 ^~~~~~~~~~~ 2023-08-04T11:41:56,154 P7_PROFILE 2023-08-04T11:41:56,155 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,155 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:56,156 ^~~~~~~~~~~ 2023-08-04T11:41:56,156 P7_PROFILE 2023-08-04T11:41:56,157 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,157 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:56,158 ^~~~~~~~~~~ 2023-08-04T11:41:56,158 P7_PROFILE 2023-08-04T11:41:56,159 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,159 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,160 ^~~~~~~~~~~ 2023-08-04T11:41:56,160 P7_PROFILE 2023-08-04T11:41:56,161 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,161 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,162 ^~~~~~~~~~~ 2023-08-04T11:41:56,162 P7_PROFILE 2023-08-04T11:41:56,163 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,163 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,164 ^~~~~~ 2023-08-04T11:41:56,165 P7_GMX 2023-08-04T11:41:56,165 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,166 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,167 ^~~~~~ 2023-08-04T11:41:56,168 P7_GMX 2023-08-04T11:41:56,168 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,169 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,170 ^~~~~~ 2023-08-04T11:41:56,170 P7_GMX 2023-08-04T11:41:56,171 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,172 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,172 ^~~~~~ 2023-08-04T11:41:56,173 P7_GMX 2023-08-04T11:41:56,173 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,174 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,174 ^~~~~~ 2023-08-04T11:41:56,175 P7_GMX 2023-08-04T11:41:56,176 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,176 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,176 ^~~~~~ 2023-08-04T11:41:56,177 P7_GMX 2023-08-04T11:41:56,177 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,178 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,178 ^~~~~~ 2023-08-04T11:41:56,179 P7_GMX 2023-08-04T11:41:56,179 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,180 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,180 ^~~~~~ 2023-08-04T11:41:56,181 P7_GMX 2023-08-04T11:41:56,181 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,182 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,182 ^~~~~~ 2023-08-04T11:41:56,183 P7_GMX 2023-08-04T11:41:56,183 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,183 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,184 ^~~~~~ 2023-08-04T11:41:56,184 P7_GMX 2023-08-04T11:41:56,185 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,185 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:56,186 ^~~~~~~~~~~ 2023-08-04T11:41:56,186 P7_PROFILE 2023-08-04T11:41:56,186 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,187 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:56,187 ^~~~~~~~~~~ 2023-08-04T11:41:56,188 P7_PROFILE 2023-08-04T11:41:56,189 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,189 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:56,189 ^~~~~~~~~~~ 2023-08-04T11:41:56,190 P7_PROFILE 2023-08-04T11:41:56,190 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,190 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:56,191 ^~~~~~~~~~~ 2023-08-04T11:41:56,191 P7_PROFILE 2023-08-04T11:41:56,192 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,192 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:56,192 ^~~~~~~~~~~ 2023-08-04T11:41:56,193 P7_PROFILE 2023-08-04T11:41:56,193 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,193 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:56,194 ^~~~~~~~~~~ 2023-08-04T11:41:56,194 P7_PROFILE 2023-08-04T11:41:56,195 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,195 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:56,195 ^~~~~~~~~~~ 2023-08-04T11:41:56,196 P7_PROFILE 2023-08-04T11:41:56,196 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,197 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:56,197 ^~~~~~~~~~~ 2023-08-04T11:41:56,197 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,198 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:56,198 ^~~~~~~~~~~ 2023-08-04T11:41:56,199 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,199 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:56,199 ^~~~~~~~~~~ 2023-08-04T11:41:56,200 P7_PROFILE 2023-08-04T11:41:56,200 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,200 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:56,201 ^~~~~~~~~~~ 2023-08-04T11:41:56,201 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,202 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:56,202 ^~~~~~~~~~~ 2023-08-04T11:41:56,202 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,202 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:56,203 ^~~~~~~~~~~ 2023-08-04T11:41:56,203 P7_PROFILE 2023-08-04T11:41:56,203 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,204 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:56,204 ^~~~~~~~~~~ 2023-08-04T11:41:56,205 P7_PROFILE 2023-08-04T11:41:56,205 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,205 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:56,206 ^~~~~~~~~~~ 2023-08-04T11:41:56,206 P7_PROFILE 2023-08-04T11:41:56,207 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,207 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:56,208 ^~~~~~~~~~~ 2023-08-04T11:41:56,208 P7_PROFILE 2023-08-04T11:41:56,209 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,209 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:56,210 ^~~~~~~~~~~ 2023-08-04T11:41:56,210 P7_PROFILE 2023-08-04T11:41:56,211 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,211 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:56,212 ^~~~~~~~~~~ 2023-08-04T11:41:56,212 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,213 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:56,213 ^~~~~~~~~~~ 2023-08-04T11:41:56,213 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2023-08-04T11:41:56,214 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2023-08-04T11:41:56,214 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,215 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:56,215 ^~~~~~~~~~~ 2023-08-04T11:41:56,215 P7_PROFILE 2023-08-04T11:41:56,216 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,216 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:56,217 ^~~~~~~~~~~ 2023-08-04T11:41:56,217 P7_PROFILE 2023-08-04T11:41:56,217 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,218 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:56,218 ^~~~~~~~~~~ 2023-08-04T11:41:56,219 P7_PROFILE 2023-08-04T11:41:56,219 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,220 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:56,220 ^~~~~~~~~~~ 2023-08-04T11:41:56,220 P7_PROFILE 2023-08-04T11:41:56,221 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,222 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:56,222 ^~~~~~~~~~~ 2023-08-04T11:41:56,223 P7_PROFILE 2023-08-04T11:41:56,223 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2023-08-04T11:41:56,224 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2023-08-04T11:41:56,224 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2023-08-04T11:41:56,225 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2023-08-04T11:41:56,225 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2023-08-04T11:41:56,226 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2023-08-04T11:41:56,396 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2023-08-04T11:41:56,400 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2023-08-04T11:41:56,402 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2023-08-04T11:41:56,404 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2023-08-04T11:41:56,547 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2023-08-04T11:41:56,548 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:56,548 #error "No vector implementation enabled" 2023-08-04T11:41:56,548 ^~~~~ 2023-08-04T11:41:56,550 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,551 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:56,551 ^~~~~~ 2023-08-04T11:41:56,552 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,552 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:56,553 ^~~~~~ 2023-08-04T11:41:56,553 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,554 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:56,555 ^~~~~~ 2023-08-04T11:41:56,555 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,556 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:56,557 ^~~~~~ 2023-08-04T11:41:56,558 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,558 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:56,559 ^~~~~~~~~~~ 2023-08-04T11:41:56,559 P7_PROFILE 2023-08-04T11:41:56,561 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,562 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:56,562 ^~~~~~~~~~~ 2023-08-04T11:41:56,563 P7_PROFILE 2023-08-04T11:41:56,563 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,564 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:56,565 ^~~~~~~~~~~ 2023-08-04T11:41:56,565 P7_PROFILE 2023-08-04T11:41:56,566 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,567 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:56,567 ^~~~~~~~~~~ 2023-08-04T11:41:56,568 P7_PROFILE 2023-08-04T11:41:56,571 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,571 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:56,572 ^~~~~~~~~~~ 2023-08-04T11:41:56,577 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,577 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:56,578 ^~~~~~~~~~~ 2023-08-04T11:41:56,579 P7_PROFILE 2023-08-04T11:41:56,581 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,582 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:56,582 ^~~~~~~~~~~ 2023-08-04T11:41:56,583 P7_PROFILE 2023-08-04T11:41:56,586 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,587 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,588 ^~~~~~~~~~~ 2023-08-04T11:41:56,588 P7_PROFILE 2023-08-04T11:41:56,589 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,590 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,590 ^~~~~~ 2023-08-04T11:41:56,593 P7_GMX 2023-08-04T11:41:56,601 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,602 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,602 ^~~~~~ 2023-08-04T11:41:56,603 P7_GMX 2023-08-04T11:41:56,603 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,604 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,605 ^~~~~~ 2023-08-04T11:41:56,605 P7_GMX 2023-08-04T11:41:56,606 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,606 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,607 ^~~~~~ 2023-08-04T11:41:56,608 P7_GMX 2023-08-04T11:41:56,608 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,609 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:56,609 ^~~~~~~~~~~ 2023-08-04T11:41:56,610 P7_PROFILE 2023-08-04T11:41:56,621 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,622 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:56,622 ^~~~~~~~~~~ 2023-08-04T11:41:56,623 P7_PROFILE 2023-08-04T11:41:56,624 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,624 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:56,625 ^~~~~~~~~~~ 2023-08-04T11:41:56,625 P7_PROFILE 2023-08-04T11:41:56,626 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,626 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:56,626 ^~~~~~~~~~~ 2023-08-04T11:41:56,627 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,627 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:56,628 ^~~~~~~~~~~ 2023-08-04T11:41:56,628 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,629 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:56,630 ^~~~~~~~~~~ 2023-08-04T11:41:56,630 P7_PROFILE 2023-08-04T11:41:56,631 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,631 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:56,632 ^~~~~~~~~~~ 2023-08-04T11:41:56,632 P7_PROFILE 2023-08-04T11:41:56,633 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2023-08-04T11:41:56,633 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,633 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:56,634 ^~~~~~~~~~~ 2023-08-04T11:41:56,634 P7_PROFILE 2023-08-04T11:41:56,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2023-08-04T11:41:56,650 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2023-08-04T11:41:56,653 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2023-08-04T11:41:56,679 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2023-08-04T11:41:56,685 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2023-08-04T11:41:56,752 In file included from vendor/hmmer/src/modelconfig.c:25: 2023-08-04T11:41:56,753 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:56,753 #error "No vector implementation enabled" 2023-08-04T11:41:56,754 ^~~~~ 2023-08-04T11:41:56,754 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,755 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:56,755 ^~~~~~ 2023-08-04T11:41:56,756 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,756 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:56,757 ^~~~~~ 2023-08-04T11:41:56,757 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,759 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:56,759 ^~~~~~ 2023-08-04T11:41:56,760 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:56,760 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:56,761 ^~~~~~ 2023-08-04T11:41:56,765 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,766 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:56,767 ^~~~~~~~~~~ 2023-08-04T11:41:56,767 P7_PROFILE 2023-08-04T11:41:56,769 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,771 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:56,771 ^~~~~~~~~~~ 2023-08-04T11:41:56,772 P7_PROFILE 2023-08-04T11:41:56,772 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,776 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:56,781 ^~~~~~~~~~~ 2023-08-04T11:41:56,782 P7_PROFILE 2023-08-04T11:41:56,782 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,783 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:56,783 ^~~~~~~~~~~ 2023-08-04T11:41:56,783 P7_PROFILE 2023-08-04T11:41:56,784 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,784 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:56,785 ^~~~~~~~~~~ 2023-08-04T11:41:56,785 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,786 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:56,786 ^~~~~~~~~~~ 2023-08-04T11:41:56,787 P7_PROFILE 2023-08-04T11:41:56,793 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,793 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:56,795 ^~~~~~~~~~~ 2023-08-04T11:41:56,795 P7_PROFILE 2023-08-04T11:41:56,796 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,797 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,798 ^~~~~~~~~~~ 2023-08-04T11:41:56,798 P7_PROFILE 2023-08-04T11:41:56,799 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,800 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,800 ^~~~~~ 2023-08-04T11:41:56,809 P7_GMX 2023-08-04T11:41:56,814 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,815 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,815 ^~~~~~ 2023-08-04T11:41:56,816 P7_GMX 2023-08-04T11:41:56,816 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,817 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,818 ^~~~~~ 2023-08-04T11:41:56,819 P7_GMX 2023-08-04T11:41:56,824 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:56,825 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:56,825 ^~~~~~ 2023-08-04T11:41:56,826 P7_GMX 2023-08-04T11:41:56,826 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,827 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:56,827 ^~~~~~~~~~~ 2023-08-04T11:41:56,828 P7_PROFILE 2023-08-04T11:41:56,829 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,829 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:56,829 ^~~~~~~~~~~ 2023-08-04T11:41:56,830 P7_PROFILE 2023-08-04T11:41:56,830 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,841 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:56,842 ^~~~~~~~~~~ 2023-08-04T11:41:56,842 P7_PROFILE 2023-08-04T11:41:56,842 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,843 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:56,843 ^~~~~~~~~~~ 2023-08-04T11:41:56,844 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:56,844 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:56,845 ^~~~~~~~~~~ 2023-08-04T11:41:56,845 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,845 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:56,846 ^~~~~~~~~~~ 2023-08-04T11:41:56,846 P7_PROFILE 2023-08-04T11:41:56,847 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,847 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:56,848 ^~~~~~~~~~~ 2023-08-04T11:41:56,848 P7_PROFILE 2023-08-04T11:41:56,848 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:56,849 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:56,849 ^~~~~~~~~~~ 2023-08-04T11:41:56,850 P7_PROFILE 2023-08-04T11:41:56,890 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2023-08-04T11:41:56,892 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2023-08-04T11:41:57,066 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2023-08-04T11:41:57,067 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:57,067 #error "No vector implementation enabled" 2023-08-04T11:41:57,068 ^~~~~ 2023-08-04T11:41:57,069 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,069 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:57,070 ^~~~~~ 2023-08-04T11:41:57,070 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,071 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:57,071 ^~~~~~ 2023-08-04T11:41:57,072 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,073 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:57,074 ^~~~~~ 2023-08-04T11:41:57,074 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,074 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:57,075 ^~~~~~ 2023-08-04T11:41:57,076 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,077 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:57,077 ^~~~~~~~~~~ 2023-08-04T11:41:57,078 P7_PROFILE 2023-08-04T11:41:57,078 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,079 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:57,080 ^~~~~~~~~~~ 2023-08-04T11:41:57,086 P7_PROFILE 2023-08-04T11:41:57,086 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,087 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:57,087 ^~~~~~~~~~~ 2023-08-04T11:41:57,088 P7_PROFILE 2023-08-04T11:41:57,088 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,089 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:57,089 ^~~~~~~~~~~ 2023-08-04T11:41:57,090 P7_PROFILE 2023-08-04T11:41:57,090 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,092 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:57,093 ^~~~~~~~~~~ 2023-08-04T11:41:57,094 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,095 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:57,096 ^~~~~~~~~~~ 2023-08-04T11:41:57,096 P7_PROFILE 2023-08-04T11:41:57,098 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,098 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:57,099 ^~~~~~~~~~~ 2023-08-04T11:41:57,100 P7_PROFILE 2023-08-04T11:41:57,102 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,103 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,103 ^~~~~~~~~~~ 2023-08-04T11:41:57,104 P7_PROFILE 2023-08-04T11:41:57,105 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,106 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,106 ^~~~~~ 2023-08-04T11:41:57,107 P7_GMX 2023-08-04T11:41:57,108 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,109 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,110 ^~~~~~ 2023-08-04T11:41:57,110 P7_GMX 2023-08-04T11:41:57,112 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,112 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,113 ^~~~~~ 2023-08-04T11:41:57,114 P7_GMX 2023-08-04T11:41:57,115 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,115 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,116 ^~~~~~ 2023-08-04T11:41:57,116 P7_GMX 2023-08-04T11:41:57,120 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,122 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:57,122 ^~~~~~~~~~~ 2023-08-04T11:41:57,123 P7_PROFILE 2023-08-04T11:41:57,124 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,124 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:57,125 ^~~~~~~~~~~ 2023-08-04T11:41:57,126 P7_PROFILE 2023-08-04T11:41:57,127 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,128 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:57,129 ^~~~~~~~~~~ 2023-08-04T11:41:57,129 P7_PROFILE 2023-08-04T11:41:57,130 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,131 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:57,131 ^~~~~~~~~~~ 2023-08-04T11:41:57,132 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,132 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:57,133 ^~~~~~~~~~~ 2023-08-04T11:41:57,139 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,141 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:57,141 ^~~~~~~~~~~ 2023-08-04T11:41:57,142 P7_PROFILE 2023-08-04T11:41:57,146 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,147 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:57,147 ^~~~~~~~~~~ 2023-08-04T11:41:57,147 P7_PROFILE 2023-08-04T11:41:57,154 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,155 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:57,155 ^~~~~~~~~~~ 2023-08-04T11:41:57,155 P7_PROFILE 2023-08-04T11:41:57,182 In file included from vendor/hmmer/src/tracealign.c:15: 2023-08-04T11:41:57,183 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:57,184 #error "No vector implementation enabled" 2023-08-04T11:41:57,184 ^~~~~ 2023-08-04T11:41:57,185 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,186 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:57,186 ^~~~~~ 2023-08-04T11:41:57,187 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,187 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:57,187 ^~~~~~ 2023-08-04T11:41:57,188 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,189 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:57,189 ^~~~~~ 2023-08-04T11:41:57,190 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2023-08-04T11:41:57,191 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,191 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:57,192 ^~~~~~ 2023-08-04T11:41:57,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2023-08-04T11:41:57,193 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,194 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:57,194 ^~~~~~~~~~~ 2023-08-04T11:41:57,195 P7_PROFILE 2023-08-04T11:41:57,196 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,196 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:57,197 ^~~~~~~~~~~ 2023-08-04T11:41:57,197 P7_PROFILE 2023-08-04T11:41:57,198 In file included from vendor/hmmer/src/hmmer.c:18: 2023-08-04T11:41:57,199 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:57,200 #error "No vector implementation enabled" 2023-08-04T11:41:57,200 ^~~~~ 2023-08-04T11:41:57,201 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,201 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:57,202 ^~~~~~~~~~~ 2023-08-04T11:41:57,202 P7_PROFILE 2023-08-04T11:41:57,203 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,203 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:57,203 ^~~~~~ 2023-08-04T11:41:57,204 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,205 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:57,205 ^~~~~~ 2023-08-04T11:41:57,206 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,206 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:57,207 ^~~~~~ 2023-08-04T11:41:57,207 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,208 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:57,209 ^~~~~~ 2023-08-04T11:41:57,210 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,210 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:57,222 ^~~~~~~~~~~ 2023-08-04T11:41:57,223 P7_PROFILE 2023-08-04T11:41:57,223 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,224 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:57,225 ^~~~~~~~~~~ 2023-08-04T11:41:57,226 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,226 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:57,227 ^~~~~~~~~~~ 2023-08-04T11:41:57,227 P7_PROFILE 2023-08-04T11:41:57,228 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,229 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:57,230 ^~~~~~~~~~~ 2023-08-04T11:41:57,230 P7_PROFILE 2023-08-04T11:41:57,236 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,237 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:57,238 ^~~~~~~~~~~ 2023-08-04T11:41:57,238 P7_PROFILE 2023-08-04T11:41:57,239 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,240 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:57,243 ^~~~~~~~~~~ 2023-08-04T11:41:57,250 P7_PROFILE 2023-08-04T11:41:57,250 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,251 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:57,251 ^~~~~~~~~~~ 2023-08-04T11:41:57,252 P7_PROFILE 2023-08-04T11:41:57,252 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,253 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:57,254 ^~~~~~~~~~~ 2023-08-04T11:41:57,255 P7_PROFILE 2023-08-04T11:41:57,255 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,256 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,257 ^~~~~~~~~~~ 2023-08-04T11:41:57,258 P7_PROFILE 2023-08-04T11:41:57,259 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,259 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:57,260 ^~~~~~~~~~~ 2023-08-04T11:41:57,262 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,263 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,263 ^~~~~~ 2023-08-04T11:41:57,264 P7_GMX 2023-08-04T11:41:57,264 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,265 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,266 ^~~~~~ 2023-08-04T11:41:57,266 P7_GMX 2023-08-04T11:41:57,267 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,268 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:57,269 ^~~~~~~~~~~ 2023-08-04T11:41:57,269 P7_PROFILE 2023-08-04T11:41:57,270 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,270 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,272 ^~~~~~ 2023-08-04T11:41:57,273 P7_GMX 2023-08-04T11:41:57,273 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,274 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:57,274 ^~~~~~~~~~~ 2023-08-04T11:41:57,275 P7_PROFILE 2023-08-04T11:41:57,275 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,275 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,276 ^~~~~~ 2023-08-04T11:41:57,276 P7_GMX 2023-08-04T11:41:57,276 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,277 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,277 ^~~~~~~~~~~ 2023-08-04T11:41:57,278 P7_PROFILE 2023-08-04T11:41:57,278 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,278 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,279 ^~~~~~ 2023-08-04T11:41:57,280 P7_GMX 2023-08-04T11:41:57,280 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,281 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:57,281 ^~~~~~~~~~~ 2023-08-04T11:41:57,288 P7_PROFILE 2023-08-04T11:41:57,297 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,299 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,300 ^~~~~~ 2023-08-04T11:41:57,300 P7_GMX 2023-08-04T11:41:57,301 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,302 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:57,302 ^~~~~~~~~~~ 2023-08-04T11:41:57,302 P7_PROFILE 2023-08-04T11:41:57,303 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,304 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,305 ^~~~~~ 2023-08-04T11:41:57,305 P7_GMX 2023-08-04T11:41:57,306 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,307 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,307 ^~~~~~ 2023-08-04T11:41:57,307 P7_GMX 2023-08-04T11:41:57,308 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,309 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:57,309 ^~~~~~~~~~~ 2023-08-04T11:41:57,310 P7_PROFILE 2023-08-04T11:41:57,310 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,311 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:57,312 ^~~~~~~~~~~ 2023-08-04T11:41:57,312 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,312 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:57,313 ^~~~~~~~~~~ 2023-08-04T11:41:57,313 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,314 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:57,314 ^~~~~~~~~~~ 2023-08-04T11:41:57,315 P7_PROFILE 2023-08-04T11:41:57,316 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,316 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:57,317 ^~~~~~~~~~~ 2023-08-04T11:41:57,318 P7_PROFILE 2023-08-04T11:41:57,318 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,319 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:57,319 ^~~~~~~~~~~ 2023-08-04T11:41:57,320 P7_PROFILE 2023-08-04T11:41:57,321 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,322 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:57,322 ^~~~~~~~~~~ 2023-08-04T11:41:57,323 P7_PROFILE 2023-08-04T11:41:57,323 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,323 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:57,324 ^~~~~~~~~~~ 2023-08-04T11:41:57,324 P7_PROFILE 2023-08-04T11:41:57,325 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,325 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:57,326 ^~~~~~~~~~~ 2023-08-04T11:41:57,326 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,327 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:57,327 ^~~~~~~~~~~ 2023-08-04T11:41:57,328 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,328 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:57,329 ^~~~~~~~~~~ 2023-08-04T11:41:57,329 P7_PROFILE 2023-08-04T11:41:57,330 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,331 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:57,332 ^~~~~~~~~~~ 2023-08-04T11:41:57,332 P7_PROFILE 2023-08-04T11:41:57,333 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,334 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:57,335 ^~~~~~~~~~~ 2023-08-04T11:41:57,335 P7_PROFILE 2023-08-04T11:41:57,336 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,336 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:57,337 ^~~~~~~~~~~ 2023-08-04T11:41:57,337 P7_PROFILE 2023-08-04T11:41:57,340 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2023-08-04T11:41:57,341 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,341 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2023-08-04T11:41:57,342 ^~~~~~ 2023-08-04T11:41:57,342 P7_GMX 2023-08-04T11:41:57,343 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,344 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2023-08-04T11:41:57,344 ^~~~~~ 2023-08-04T11:41:57,345 P7_GMX 2023-08-04T11:41:57,345 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,346 P7_OPROFILE *om = NULL; 2023-08-04T11:41:57,347 ^~~~~~~~~~~ 2023-08-04T11:41:57,348 P7_PROFILE 2023-08-04T11:41:57,348 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,349 om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-08-04T11:41:57,349 ^~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,350 p7_profile_Create 2023-08-04T11:41:57,350 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-08-04T11:41:57,351 om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-08-04T11:41:57,351 ^ 2023-08-04T11:41:57,352 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2023-08-04T11:41:57,353 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2023-08-04T11:41:57,354 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,354 p7_oprofile_Convert(gm, om); 2023-08-04T11:41:57,355 ^~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,356 p7_profile_Compare 2023-08-04T11:41:57,356 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,357 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-08-04T11:41:57,357 ^~~~~~~~~~~~~ 2023-08-04T11:41:57,358 p7_gmx_Create 2023-08-04T11:41:57,359 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-08-04T11:41:57,360 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-08-04T11:41:57,361 ^ 2023-08-04T11:41:57,363 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-08-04T11:41:57,364 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-08-04T11:41:57,364 ^ 2023-08-04T11:41:57,365 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,366 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2023-08-04T11:41:57,366 ^~~~~~~~~~~~~ 2023-08-04T11:41:57,367 p7_gmx_GrowTo 2023-08-04T11:41:57,367 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,368 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2023-08-04T11:41:57,369 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,369 p7_ReconfigLength 2023-08-04T11:41:57,370 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,370 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2023-08-04T11:41:57,371 ^~~~~~~~~~ 2023-08-04T11:41:57,371 p7_GForward 2023-08-04T11:41:57,372 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,372 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2023-08-04T11:41:57,373 ^~~~~~~~~~~ 2023-08-04T11:41:57,373 p7_GBackward 2023-08-04T11:41:57,374 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,375 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2023-08-04T11:41:57,375 ^~~~~~~~~~~ 2023-08-04T11:41:57,376 p7_GDecoding 2023-08-04T11:41:57,376 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,377 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2023-08-04T11:41:57,377 ^~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,378 p7_GOptimalAccuracy 2023-08-04T11:41:57,378 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,379 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2023-08-04T11:41:57,379 ^~~~~~~~~~ 2023-08-04T11:41:57,380 p7_GOATrace 2023-08-04T11:41:57,380 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,381 p7_omx_Reuse(oxf); 2023-08-04T11:41:57,381 ^~~~~~~~~~~~ 2023-08-04T11:41:57,382 p7_gmx_Reuse 2023-08-04T11:41:57,382 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,383 p7_omx_Destroy(oxf); 2023-08-04T11:41:57,383 ^~~~~~~~~~~~~~ 2023-08-04T11:41:57,384 p7_gmx_Destroy 2023-08-04T11:41:57,384 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-08-04T11:41:57,385 p7_oprofile_Destroy(om); 2023-08-04T11:41:57,385 ^~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,386 p7_profile_Destroy 2023-08-04T11:41:57,427 In file included from vendor/hmmer/src/p7_domain.c:16: 2023-08-04T11:41:57,428 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:57,429 #error "No vector implementation enabled" 2023-08-04T11:41:57,430 ^~~~~ 2023-08-04T11:41:57,431 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,432 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:57,432 ^~~~~~ 2023-08-04T11:41:57,433 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,433 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:57,434 ^~~~~~ 2023-08-04T11:41:57,434 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,435 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:57,436 ^~~~~~ 2023-08-04T11:41:57,438 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,439 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:57,439 ^~~~~~ 2023-08-04T11:41:57,440 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,441 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:57,444 ^~~~~~~~~~~ 2023-08-04T11:41:57,445 P7_PROFILE 2023-08-04T11:41:57,448 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,449 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:57,449 ^~~~~~~~~~~ 2023-08-04T11:41:57,451 P7_PROFILE 2023-08-04T11:41:57,452 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,452 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:57,453 ^~~~~~~~~~~ 2023-08-04T11:41:57,453 P7_PROFILE 2023-08-04T11:41:57,454 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,454 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:57,454 ^~~~~~~~~~~ 2023-08-04T11:41:57,455 P7_PROFILE 2023-08-04T11:41:57,456 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,457 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:57,457 ^~~~~~~~~~~ 2023-08-04T11:41:57,462 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,467 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:57,468 ^~~~~~~~~~~ 2023-08-04T11:41:57,468 P7_PROFILE 2023-08-04T11:41:57,469 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,469 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:57,470 ^~~~~~~~~~~ 2023-08-04T11:41:57,474 P7_PROFILE 2023-08-04T11:41:57,481 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,482 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,482 ^~~~~~~~~~~ 2023-08-04T11:41:57,483 P7_PROFILE 2023-08-04T11:41:57,484 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,485 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,485 ^~~~~~ 2023-08-04T11:41:57,485 P7_GMX 2023-08-04T11:41:57,486 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,486 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,487 ^~~~~~ 2023-08-04T11:41:57,488 P7_GMX 2023-08-04T11:41:57,488 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,489 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,489 ^~~~~~ 2023-08-04T11:41:57,490 P7_GMX 2023-08-04T11:41:57,490 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,500 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,500 ^~~~~~ 2023-08-04T11:41:57,506 P7_GMX 2023-08-04T11:41:57,507 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,507 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:57,508 ^~~~~~~~~~~ 2023-08-04T11:41:57,509 P7_PROFILE 2023-08-04T11:41:57,509 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,510 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:57,511 ^~~~~~~~~~~ 2023-08-04T11:41:57,511 P7_PROFILE 2023-08-04T11:41:57,512 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,512 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:57,513 ^~~~~~~~~~~ 2023-08-04T11:41:57,513 P7_PROFILE 2023-08-04T11:41:57,513 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,514 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:57,514 ^~~~~~~~~~~ 2023-08-04T11:41:57,515 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,515 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:57,516 ^~~~~~~~~~~ 2023-08-04T11:41:57,516 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2023-08-04T11:41:57,517 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2023-08-04T11:41:57,517 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,518 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:57,518 ^~~~~~~~~~~ 2023-08-04T11:41:57,519 P7_PROFILE 2023-08-04T11:41:57,519 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,520 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:57,520 ^~~~~~~~~~~ 2023-08-04T11:41:57,521 P7_PROFILE 2023-08-04T11:41:57,522 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,522 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:57,523 ^~~~~~~~~~~ 2023-08-04T11:41:57,523 P7_PROFILE 2023-08-04T11:41:57,523 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2023-08-04T11:41:57,530 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,530 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2023-08-04T11:41:57,531 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,533 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,533 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2023-08-04T11:41:57,534 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,534 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,535 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2023-08-04T11:41:57,536 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,536 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,536 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2023-08-04T11:41:57,537 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,537 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,538 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2023-08-04T11:41:57,538 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,539 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,539 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-08-04T11:41:57,540 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,541 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:57,541 if (ser_size != ptr - (*buf + *n)){ 2023-08-04T11:41:57,542 ^~ 2023-08-04T11:41:57,549 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2023-08-04T11:41:57,549 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,550 ret_obj->envsc = *((float *) &host_32bit); 2023-08-04T11:41:57,550 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,551 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,552 ret_obj->domcorrection = *((float *) &host_32bit); 2023-08-04T11:41:57,552 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,553 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,554 ret_obj->dombias = *((float *) &host_32bit); 2023-08-04T11:41:57,554 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,554 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,555 ret_obj->oasc = *((float *) &host_32bit); 2023-08-04T11:41:57,555 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,556 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,556 ret_obj->bitscore = *((float *) &host_32bit); 2023-08-04T11:41:57,557 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,557 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,558 ret_obj->lnP = *((double *) &host_64bit); 2023-08-04T11:41:57,558 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,559 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:41:57,560 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2023-08-04T11:41:57,560 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:57,560 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:57,561 if(ptr - (buf + *n) != obj_size){ 2023-08-04T11:41:57,561 ^~ 2023-08-04T11:41:57,609 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2023-08-04T11:41:57,611 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2023-08-04T11:41:57,778 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2023-08-04T11:41:57,779 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:57,779 #error "No vector implementation enabled" 2023-08-04T11:41:57,779 ^~~~~ 2023-08-04T11:41:57,783 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,783 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:57,784 ^~~~~~ 2023-08-04T11:41:57,785 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,785 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:57,786 ^~~~~~ 2023-08-04T11:41:57,787 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,787 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:57,788 ^~~~~~ 2023-08-04T11:41:57,788 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,789 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:57,789 ^~~~~~ 2023-08-04T11:41:57,796 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,796 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:57,797 ^~~~~~~~~~~ 2023-08-04T11:41:57,797 P7_PROFILE 2023-08-04T11:41:57,801 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,802 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:57,802 ^~~~~~~~~~~ 2023-08-04T11:41:57,803 P7_PROFILE 2023-08-04T11:41:57,807 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,807 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:57,808 ^~~~~~~~~~~ 2023-08-04T11:41:57,808 P7_PROFILE 2023-08-04T11:41:57,812 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,813 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:57,813 ^~~~~~~~~~~ 2023-08-04T11:41:57,813 P7_PROFILE 2023-08-04T11:41:57,818 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,818 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:57,819 ^~~~~~~~~~~ 2023-08-04T11:41:57,819 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2023-08-04T11:41:57,820 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:57,820 #error "No vector implementation enabled" 2023-08-04T11:41:57,821 ^~~~~ 2023-08-04T11:41:57,822 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,823 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:57,823 ^~~~~~ 2023-08-04T11:41:57,824 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,824 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:57,825 ^~~~~~ 2023-08-04T11:41:57,826 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,826 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:57,827 ^~~~~~ 2023-08-04T11:41:57,827 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:57,828 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:57,829 ^~~~~~ 2023-08-04T11:41:57,829 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,830 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:57,831 ^~~~~~~~~~~ 2023-08-04T11:41:57,831 P7_PROFILE 2023-08-04T11:41:57,832 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,833 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:57,833 ^~~~~~~~~~~ 2023-08-04T11:41:57,834 P7_PROFILE 2023-08-04T11:41:57,851 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,852 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:57,852 ^~~~~~~~~~~ 2023-08-04T11:41:57,853 P7_PROFILE 2023-08-04T11:41:57,853 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,854 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:57,855 ^~~~~~~~~~~ 2023-08-04T11:41:57,855 P7_PROFILE 2023-08-04T11:41:57,856 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,856 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:57,857 ^~~~~~~~~~~ 2023-08-04T11:41:57,858 P7_PROFILE 2023-08-04T11:41:57,858 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,859 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:57,860 ^~~~~~~~~~~ 2023-08-04T11:41:57,860 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,871 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:57,872 ^~~~~~~~~~~ 2023-08-04T11:41:57,872 P7_PROFILE 2023-08-04T11:41:57,873 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,873 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,873 ^~~~~~~~~~~ 2023-08-04T11:41:57,874 P7_PROFILE 2023-08-04T11:41:57,875 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,875 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:57,876 ^~~~~~~~~~~ 2023-08-04T11:41:57,877 P7_PROFILE 2023-08-04T11:41:57,877 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,878 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:57,879 ^~~~~~~~~~~ 2023-08-04T11:41:57,879 P7_PROFILE 2023-08-04T11:41:57,880 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,880 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,891 ^~~~~~~~~~~ 2023-08-04T11:41:57,892 P7_PROFILE 2023-08-04T11:41:57,892 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,893 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,893 ^~~~~~ 2023-08-04T11:41:57,894 P7_GMX 2023-08-04T11:41:57,895 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,895 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,896 ^~~~~~ 2023-08-04T11:41:57,896 P7_GMX 2023-08-04T11:41:57,897 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,897 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,898 ^~~~~~ 2023-08-04T11:41:57,899 P7_GMX 2023-08-04T11:41:57,900 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,905 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,916 ^~~~~~ 2023-08-04T11:41:57,917 P7_GMX 2023-08-04T11:41:57,918 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,918 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,919 ^~~~~~ 2023-08-04T11:41:57,920 P7_GMX 2023-08-04T11:41:57,920 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,922 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,922 ^~~~~~ 2023-08-04T11:41:57,923 P7_GMX 2023-08-04T11:41:57,923 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,924 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,924 ^~~~~~ 2023-08-04T11:41:57,925 P7_GMX 2023-08-04T11:41:57,925 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,926 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:57,927 ^~~~~~~~~~~ 2023-08-04T11:41:57,927 P7_PROFILE 2023-08-04T11:41:57,928 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,928 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:57,929 ^~~~~~~~~~~ 2023-08-04T11:41:57,929 P7_PROFILE 2023-08-04T11:41:57,930 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:57,938 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:57,938 ^~~~~~ 2023-08-04T11:41:57,938 P7_GMX 2023-08-04T11:41:57,939 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,939 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:57,940 ^~~~~~~~~~~ 2023-08-04T11:41:57,940 P7_PROFILE 2023-08-04T11:41:57,945 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,946 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:57,947 ^~~~~~~~~~~ 2023-08-04T11:41:57,948 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,948 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:57,949 ^~~~~~~~~~~ 2023-08-04T11:41:57,950 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,950 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:57,950 ^~~~~~~~~~~ 2023-08-04T11:41:57,952 P7_PROFILE 2023-08-04T11:41:57,953 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,954 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:57,954 ^~~~~~~~~~~ 2023-08-04T11:41:57,955 P7_PROFILE 2023-08-04T11:41:57,955 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,956 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:57,957 ^~~~~~~~~~~ 2023-08-04T11:41:57,957 P7_PROFILE 2023-08-04T11:41:57,958 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,959 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:57,960 ^~~~~~~~~~~ 2023-08-04T11:41:57,960 P7_PROFILE 2023-08-04T11:41:57,961 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,962 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:57,963 ^~~~~~~~~~~ 2023-08-04T11:41:57,964 P7_PROFILE 2023-08-04T11:41:57,965 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,965 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:57,966 ^~~~~~~~~~~ 2023-08-04T11:41:57,966 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,967 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:57,967 ^~~~~~~~~~~ 2023-08-04T11:41:57,968 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,968 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:57,969 ^~~~~~~~~~~ 2023-08-04T11:41:57,970 P7_PROFILE 2023-08-04T11:41:57,970 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,971 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:57,971 ^~~~~~~~~~~ 2023-08-04T11:41:57,972 P7_PROFILE 2023-08-04T11:41:57,972 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2023-08-04T11:41:57,973 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:57,974 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2023-08-04T11:41:57,974 ^~~~~~~~~~~ 2023-08-04T11:41:57,974 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,978 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:57,979 ^~~~~~~~~~~ 2023-08-04T11:41:57,979 P7_PROFILE 2023-08-04T11:41:57,980 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2023-08-04T11:41:57,981 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,981 P7_OPROFILE *om = NULL; /* target profile */ 2023-08-04T11:41:57,982 ^~~~~~~~~~~ 2023-08-04T11:41:57,982 P7_PROFILE 2023-08-04T11:41:57,982 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,983 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:57,983 ^~~~~~~~~~~ 2023-08-04T11:41:57,984 P7_PROFILE 2023-08-04T11:41:57,984 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2023-08-04T11:41:57,985 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-08-04T11:41:57,985 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:41:57,986 ^~~~~~~~~~~ 2023-08-04T11:41:57,986 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:41:57,987 if ( size <= 0 ) { \ 2023-08-04T11:41:57,988 ^~~~ 2023-08-04T11:41:57,988 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2023-08-04T11:41:57,989 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:41:57,990 ^~~~~~~~~~~ 2023-08-04T11:41:57,990 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:41:57,991 if ( size <= 0 ) { \ 2023-08-04T11:41:57,991 ^~~~ 2023-08-04T11:41:57,992 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-08-04T11:41:57,993 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:41:57,994 ^ 2023-08-04T11:41:57,994 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:41:57,995 if ( size <= 0 ) { \ 2023-08-04T11:41:57,995 ^~~~ 2023-08-04T11:41:57,996 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-08-04T11:41:57,996 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:41:57,997 ^ 2023-08-04T11:41:57,997 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:41:57,998 if ( ((p) = malloc(size)) == NULL) { \ 2023-08-04T11:41:57,999 ^~~~ 2023-08-04T11:41:57,999 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-08-04T11:41:58,000 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:41:58,000 ^ 2023-08-04T11:41:58,001 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:41:58,002 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2023-08-04T11:41:58,002 ^~~~ 2023-08-04T11:41:58,003 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-08-04T11:41:58,004 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2023-08-04T11:41:58,005 ^~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:58,005 p7_profile_Reuse 2023-08-04T11:41:58,006 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-08-04T11:41:58,007 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2023-08-04T11:41:58,008 ^~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:58,008 p7_profile_Reuse 2023-08-04T11:41:58,008 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-08-04T11:41:58,009 if (om) p7_oprofile_Destroy(om); 2023-08-04T11:41:58,009 ^~~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:58,010 p7_profile_Destroy 2023-08-04T11:41:58,011 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2023-08-04T11:41:58,011 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,012 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-08-04T11:41:58,013 ^~~~~~~~~~~ 2023-08-04T11:41:58,013 P7_PROFILE 2023-08-04T11:41:58,014 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2023-08-04T11:41:58,015 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-08-04T11:41:58,015 ^ 2023-08-04T11:41:58,016 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,016 for (i = 0; i < cache->n; i++) 2023-08-04T11:41:58,017 ^ 2023-08-04T11:41:58,018 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2023-08-04T11:41:58,020 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2023-08-04T11:41:58,021 n += p7_oprofile_Sizeof(cache->list[i]); 2023-08-04T11:41:58,021 ^~~~~~~~~~~~~~~~~~ 2023-08-04T11:41:58,022 p7_profile_Sizeof 2023-08-04T11:41:58,022 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2023-08-04T11:41:58,022 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2023-08-04T11:41:58,023 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,024 P7_OPROFILE *om; 2023-08-04T11:41:58,024 ^~~~~~~~~~~ 2023-08-04T11:41:58,025 P7_PROFILE 2023-08-04T11:41:58,025 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,026 for (i = 0; i < cache->n; i++) 2023-08-04T11:41:58,026 ^ 2023-08-04T11:41:58,027 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2023-08-04T11:41:58,028 if (om->name) free(om->name); 2023-08-04T11:41:58,028 ^~ 2023-08-04T11:41:58,029 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2023-08-04T11:41:58,029 if (om->name) free(om->name); 2023-08-04T11:41:58,029 ^~ 2023-08-04T11:41:58,030 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2023-08-04T11:41:58,031 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2023-08-04T11:41:58,031 ^~ 2023-08-04T11:41:58,032 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2023-08-04T11:41:58,032 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,033 for (i = 0; i < cache->n; i++) 2023-08-04T11:41:58,033 ^ 2023-08-04T11:41:58,035 In file included from vendor/hmmer/src/p7_prior.c:11: 2023-08-04T11:41:58,035 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:58,035 #error "No vector implementation enabled" 2023-08-04T11:41:58,036 ^~~~~ 2023-08-04T11:41:58,039 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,040 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:58,041 ^~~~~~ 2023-08-04T11:41:58,041 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,042 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:58,042 ^~~~~~ 2023-08-04T11:41:58,043 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,043 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:58,044 ^~~~~~ 2023-08-04T11:41:58,044 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,045 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:58,045 ^~~~~~ 2023-08-04T11:41:58,048 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,049 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:58,049 ^~~~~~~~~~~ 2023-08-04T11:41:58,050 P7_PROFILE 2023-08-04T11:41:58,051 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,052 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:58,053 ^~~~~~~~~~~ 2023-08-04T11:41:58,053 P7_PROFILE 2023-08-04T11:41:58,055 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,056 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:58,056 ^~~~~~~~~~~ 2023-08-04T11:41:58,057 P7_PROFILE 2023-08-04T11:41:58,058 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,058 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:58,059 ^~~~~~~~~~~ 2023-08-04T11:41:58,059 P7_PROFILE 2023-08-04T11:41:58,062 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,063 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:58,063 ^~~~~~~~~~~ 2023-08-04T11:41:58,067 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,068 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:58,068 ^~~~~~~~~~~ 2023-08-04T11:41:58,069 P7_PROFILE 2023-08-04T11:41:58,070 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,071 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:58,072 ^~~~~~~~~~~ 2023-08-04T11:41:58,072 P7_PROFILE 2023-08-04T11:41:58,074 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,075 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,076 ^~~~~~~~~~~ 2023-08-04T11:41:58,077 P7_PROFILE 2023-08-04T11:41:58,078 In file included from vendor/hmmer/src/p7_trace.c:22: 2023-08-04T11:41:58,078 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:58,078 #error "No vector implementation enabled" 2023-08-04T11:41:58,079 ^~~~~ 2023-08-04T11:41:58,080 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,081 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,081 ^~~~~~ 2023-08-04T11:41:58,082 P7_GMX 2023-08-04T11:41:58,083 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,083 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:58,084 ^~~~~~ 2023-08-04T11:41:58,085 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,086 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:58,088 ^~~~~~ 2023-08-04T11:41:58,089 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,090 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:58,090 ^~~~~~ 2023-08-04T11:41:58,091 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,092 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:58,093 ^~~~~~ 2023-08-04T11:41:58,093 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,094 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,095 ^~~~~~ 2023-08-04T11:41:58,095 P7_GMX 2023-08-04T11:41:58,096 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,097 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:58,097 ^~~~~~~~~~~ 2023-08-04T11:41:58,098 P7_PROFILE 2023-08-04T11:41:58,099 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,099 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,100 ^~~~~~ 2023-08-04T11:41:58,100 P7_GMX 2023-08-04T11:41:58,101 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,102 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:58,103 ^~~~~~~~~~~ 2023-08-04T11:41:58,103 P7_PROFILE 2023-08-04T11:41:58,104 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,104 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,105 ^~~~~~ 2023-08-04T11:41:58,106 P7_GMX 2023-08-04T11:41:58,107 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,108 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:58,108 ^~~~~~~~~~~ 2023-08-04T11:41:58,109 P7_PROFILE 2023-08-04T11:41:58,110 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,110 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:58,111 ^~~~~~~~~~~ 2023-08-04T11:41:58,112 P7_PROFILE 2023-08-04T11:41:58,113 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,114 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:58,114 ^~~~~~~~~~~ 2023-08-04T11:41:58,115 P7_PROFILE 2023-08-04T11:41:58,116 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,117 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:58,117 ^~~~~~~~~~~ 2023-08-04T11:41:58,118 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,119 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:58,120 ^~~~~~~~~~~ 2023-08-04T11:41:58,121 P7_PROFILE 2023-08-04T11:41:58,121 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,122 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:58,122 ^~~~~~~~~~~ 2023-08-04T11:41:58,123 P7_PROFILE 2023-08-04T11:41:58,124 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,124 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:58,125 ^~~~~~~~~~~ 2023-08-04T11:41:58,125 P7_PROFILE 2023-08-04T11:41:58,126 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,127 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:58,128 ^~~~~~~~~~~ 2023-08-04T11:41:58,129 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,129 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:58,130 ^~~~~~~~~~~ 2023-08-04T11:41:58,130 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,131 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:58,131 ^~~~~~~~~~~ 2023-08-04T11:41:58,132 P7_PROFILE 2023-08-04T11:41:58,133 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,134 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:58,134 ^~~~~~~~~~~ 2023-08-04T11:41:58,135 P7_PROFILE 2023-08-04T11:41:58,135 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,136 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,137 ^~~~~~~~~~~ 2023-08-04T11:41:58,138 P7_PROFILE 2023-08-04T11:41:58,139 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,139 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:58,140 ^~~~~~~~~~~ 2023-08-04T11:41:58,141 P7_PROFILE 2023-08-04T11:41:58,141 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,142 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,143 ^~~~~~ 2023-08-04T11:41:58,143 P7_GMX 2023-08-04T11:41:58,144 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,144 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,145 ^~~~~~ 2023-08-04T11:41:58,146 P7_GMX 2023-08-04T11:41:58,146 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,147 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,147 ^~~~~~ 2023-08-04T11:41:58,148 P7_GMX 2023-08-04T11:41:58,149 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,150 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,151 ^~~~~~ 2023-08-04T11:41:58,152 P7_GMX 2023-08-04T11:41:58,152 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,153 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:58,154 ^~~~~~~~~~~ 2023-08-04T11:41:58,154 P7_PROFILE 2023-08-04T11:41:58,155 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,157 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:58,158 ^~~~~~~~~~~ 2023-08-04T11:41:58,158 P7_PROFILE 2023-08-04T11:41:58,159 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,160 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:58,160 ^~~~~~~~~~~ 2023-08-04T11:41:58,161 P7_PROFILE 2023-08-04T11:41:58,161 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,162 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:58,162 ^~~~~~~~~~~ 2023-08-04T11:41:58,163 P7_PROFILE 2023-08-04T11:41:58,163 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,164 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:58,164 ^~~~~~~~~~~ 2023-08-04T11:41:58,164 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,165 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:58,166 ^~~~~~~~~~~ 2023-08-04T11:41:58,166 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,167 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:58,167 ^~~~~~~~~~~ 2023-08-04T11:41:58,168 P7_PROFILE 2023-08-04T11:41:58,169 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,170 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:58,171 ^~~~~~~~~~~ 2023-08-04T11:41:58,172 P7_PROFILE 2023-08-04T11:41:58,172 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,173 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:58,173 ^~~~~~~~~~~ 2023-08-04T11:41:58,174 P7_PROFILE 2023-08-04T11:41:58,379 In file included from vendor/hmmer/src/fm_general.c:14: 2023-08-04T11:41:58,380 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:41:58,380 #error "No vector implementation enabled" 2023-08-04T11:41:58,381 ^~~~~ 2023-08-04T11:41:58,382 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,383 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:41:58,383 ^~~~~~ 2023-08-04T11:41:58,383 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,384 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:41:58,384 ^~~~~~ 2023-08-04T11:41:58,384 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,385 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:41:58,385 ^~~~~~ 2023-08-04T11:41:58,386 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:41:58,386 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:41:58,386 ^~~~~~ 2023-08-04T11:41:58,387 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,388 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:41:58,389 ^~~~~~~~~~~ 2023-08-04T11:41:58,389 P7_PROFILE 2023-08-04T11:41:58,390 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,391 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:41:58,392 ^~~~~~~~~~~ 2023-08-04T11:41:58,392 P7_PROFILE 2023-08-04T11:41:58,393 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,394 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:41:58,394 ^~~~~~~~~~~ 2023-08-04T11:41:58,395 P7_PROFILE 2023-08-04T11:41:58,396 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,396 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:41:58,397 ^~~~~~~~~~~ 2023-08-04T11:41:58,397 P7_PROFILE 2023-08-04T11:41:58,399 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,400 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:41:58,400 ^~~~~~~~~~~ 2023-08-04T11:41:58,404 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,405 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:41:58,406 ^~~~~~~~~~~ 2023-08-04T11:41:58,406 P7_PROFILE 2023-08-04T11:41:58,407 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,408 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:41:58,408 ^~~~~~~~~~~ 2023-08-04T11:41:58,409 P7_PROFILE 2023-08-04T11:41:58,411 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,412 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,412 ^~~~~~~~~~~ 2023-08-04T11:41:58,412 P7_PROFILE 2023-08-04T11:41:58,414 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,414 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,415 ^~~~~~ 2023-08-04T11:41:58,415 P7_GMX 2023-08-04T11:41:58,417 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,417 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,418 ^~~~~~ 2023-08-04T11:41:58,418 P7_GMX 2023-08-04T11:41:58,419 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,420 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,421 ^~~~~~ 2023-08-04T11:41:58,421 P7_GMX 2023-08-04T11:41:58,422 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:41:58,423 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:41:58,423 ^~~~~~ 2023-08-04T11:41:58,423 P7_GMX 2023-08-04T11:41:58,427 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,428 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:41:58,429 ^~~~~~~~~~~ 2023-08-04T11:41:58,429 P7_PROFILE 2023-08-04T11:41:58,430 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,431 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:41:58,432 ^~~~~~~~~~~ 2023-08-04T11:41:58,432 P7_PROFILE 2023-08-04T11:41:58,434 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,434 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:41:58,435 ^~~~~~~~~~~ 2023-08-04T11:41:58,435 P7_PROFILE 2023-08-04T11:41:58,436 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,436 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:41:58,437 ^~~~~~~~~~~ 2023-08-04T11:41:58,437 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:41:58,438 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:41:58,438 ^~~~~~~~~~~ 2023-08-04T11:41:58,439 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,439 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:41:58,440 ^~~~~~~~~~~ 2023-08-04T11:41:58,440 P7_PROFILE 2023-08-04T11:41:58,441 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,441 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:41:58,442 ^~~~~~~~~~~ 2023-08-04T11:41:58,442 P7_PROFILE 2023-08-04T11:41:58,448 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:41:58,449 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:41:58,449 ^~~~~~~~~~~ 2023-08-04T11:41:58,449 P7_PROFILE 2023-08-04T11:41:58,458 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2023-08-04T11:41:58,458 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,458 if (ranges[lo].lower > end) return -1; 2023-08-04T11:41:58,459 ^ 2023-08-04T11:41:58,459 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,459 if (ranges[hi].upper < start) return -1; 2023-08-04T11:41:58,460 ^ 2023-08-04T11:41:58,460 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,461 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2023-08-04T11:41:58,461 ^ 2023-08-04T11:41:58,461 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,462 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-08-04T11:41:58,462 ^~ 2023-08-04T11:41:58,462 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,463 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-08-04T11:41:58,463 ^~ 2023-08-04T11:41:58,463 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,464 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-08-04T11:41:58,464 ^~ 2023-08-04T11:41:58,464 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,465 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-08-04T11:41:58,465 ^~ 2023-08-04T11:41:58,466 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2023-08-04T11:41:58,466 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-08-04T11:41:58,466 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-08-04T11:41:58,467 ^~ 2023-08-04T11:41:58,467 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,467 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-08-04T11:41:58,468 ^~ 2023-08-04T11:41:58,468 In file included from vendor/hmmer/src/fm_general.c:12: 2023-08-04T11:41:58,468 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:58,469 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:41:58,469 ^ 2023-08-04T11:41:58,469 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:41:58,470 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-08-04T11:41:58,470 ^~~~~~~ 2023-08-04T11:41:58,471 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:41:58,471 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:41:58,471 ^~~ 2023-08-04T11:41:58,472 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:41:58,472 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-08-04T11:41:58,472 ^~~~~~~ 2023-08-04T11:41:58,473 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:58,473 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-04T11:41:58,473 ^ 2023-08-04T11:41:58,474 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-08-04T11:41:58,474 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-08-04T11:41:58,474 ^~~~~~~ 2023-08-04T11:41:58,475 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:41:58,475 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-04T11:41:58,475 ^~~ 2023-08-04T11:41:58,476 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-08-04T11:41:58,476 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-08-04T11:41:58,476 ^~~~~~~ 2023-08-04T11:41:58,477 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:58,477 for (j= start; j<=end; j++) 2023-08-04T11:41:58,477 ^~ 2023-08-04T11:41:58,478 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2023-08-04T11:41:58,478 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-08-04T11:41:58,479 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-08-04T11:41:58,479 ^~ 2023-08-04T11:41:58,479 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-08-04T11:41:58,480 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-08-04T11:41:58,480 ^~ 2023-08-04T11:41:58,483 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2023-08-04T11:41:58,483 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,484 for (i=0; iseq_count; i++) { 2023-08-04T11:41:58,484 ^ 2023-08-04T11:41:58,488 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:58,489 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2023-08-04T11:41:58,489 ^~ 2023-08-04T11:41:58,489 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:58,490 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2023-08-04T11:41:58,490 ^~ 2023-08-04T11:41:58,490 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:58,491 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2023-08-04T11:41:58,491 ^~ 2023-08-04T11:41:58,492 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:41:58,492 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2023-08-04T11:41:58,492 ^~ 2023-08-04T11:41:58,493 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,493 for (i=0; iambig_list->count; i++) { 2023-08-04T11:41:58,493 ^ 2023-08-04T11:41:58,494 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,495 for (i=0; iseq_count; i++) 2023-08-04T11:41:58,495 ^ 2023-08-04T11:41:58,496 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2023-08-04T11:41:58,496 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:41:58,497 for (i=0; iseq_count; i++) { 2023-08-04T11:41:58,497 ^ 2023-08-04T11:41:58,647 checking whether can be included... yes 2023-08-04T11:41:58,648 checking whether can be included... yes 2023-08-04T11:41:58,648 checking whether can be included... yes 2023-08-04T11:41:58,649 checking whether can be included... yes 2023-08-04T11:41:58,649 checking whether can be included... yes 2023-08-04T11:41:58,649 checking whether can be included... yes 2023-08-04T11:41:58,650 checking whether can be included... yes 2023-08-04T11:41:58,650 checking whether can be included... yes 2023-08-04T11:41:58,650 checking whether can be included... yes 2023-08-04T11:41:58,651 checking whether can be included... yes 2023-08-04T11:41:58,651 checking whether can be included... yes 2023-08-04T11:41:58,651 checking whether can be included... yes 2023-08-04T11:41:58,652 checking whether can be included... yes 2023-08-04T11:41:58,652 checking whether function 'aligned_alloc' is available... yes 2023-08-04T11:41:58,652 checking whether function 'erfc' is available... yes 2023-08-04T11:41:58,652 checking whether function 'getpid' is available... yes 2023-08-04T11:41:58,653 checking whether function '_mm_malloc' is available... no 2023-08-04T11:41:58,653 checking whether function 'popen' is available... yes 2023-08-04T11:41:58,653 checking whether function 'posix_memalign' is available... yes 2023-08-04T11:41:58,654 checking whether function 'strcasecmp' is available... yes 2023-08-04T11:41:58,654 checking whether function 'strsep' is available... yes 2023-08-04T11:41:58,655 checking whether function 'sysconf' is available... yes 2023-08-04T11:41:58,655 checking whether function 'sysctl' is available... yes 2023-08-04T11:41:58,656 checking whether function 'times' is available... yes 2023-08-04T11:41:58,656 checking whether function 'fseeko' is available... yes 2023-08-04T11:41:58,656 checking whether can be included... yes 2023-08-04T11:41:58,657 checking whether can be included... yes 2023-08-04T11:41:58,657 checking whether can be included... yes 2023-08-04T11:41:58,658 checking whether can be included... yes 2023-08-04T11:41:58,658 checking whether can be included... yes 2023-08-04T11:41:58,659 checking whether can be included... yes 2023-08-04T11:41:58,659 checking whether can be included... yes 2023-08-04T11:41:58,660 checking whether can be included... yes 2023-08-04T11:41:58,660 checking whether function 'mkstemp' is available... yes 2023-08-04T11:41:58,661 checking whether function 'popen' is available... yes 2023-08-04T11:41:58,661 checking whether function 'putenv' is available... yes 2023-08-04T11:41:58,662 checking whether function 'strcasecmp' is available... yes 2023-08-04T11:41:58,662 checking whether function 'strsep' is available... yes 2023-08-04T11:41:58,662 checking whether function 'times' is available... yes 2023-08-04T11:41:58,663 checking whether function 'getpid' is available... yes 2023-08-04T11:41:58,663 checking whether function 'sysctl' is available... yes 2023-08-04T11:41:58,664 checking whether function 'sysconf' is available... yes 2023-08-04T11:41:58,664 checking whether function 'getcwd' is available... yes 2023-08-04T11:41:58,665 checking whether function 'chmod' is available... yes 2023-08-04T11:41:58,665 checking whether function 'stat' is available... yes 2023-08-04T11:41:58,665 checking whether function 'fstat' is available... yes 2023-08-04T11:41:58,666 checking whether function 'erfc' is available... yes 2023-08-04T11:41:58,666 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-08-04T11:41:58,830 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2023-08-04T11:41:58,875 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp6_cmdpz7[/] 2023-08-04T11:41:58,875 [bold magenta]cwd[/]: /tmp/pip-wheel-ubnl31c8/pyhmmer_14eb8826f31444cc8934d016c5e1dbe4 2023-08-04T11:41:58,876 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2023-08-04T11:41:58,881 ERROR: Failed building wheel for pyhmmer 2023-08-04T11:41:58,886 Failed to build pyhmmer 2023-08-04T11:41:58,888 ERROR: Failed to build one or more wheels 2023-08-04T11:41:58,891 Exception information: 2023-08-04T11:41:58,891 Traceback (most recent call last): 2023-08-04T11:41:58,891 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-08-04T11:41:58,891 status = run_func(*args) 2023-08-04T11:41:58,891 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-08-04T11:41:58,891 return func(self, options, args) 2023-08-04T11:41:58,891 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-08-04T11:41:58,891 raise CommandError("Failed to build one or more wheels") 2023-08-04T11:41:58,891 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-08-04T11:41:58,900 Removed build tracker: '/tmp/pip-build-tracker-sk0btm8_'