2023-08-04T11:54:02,768 Created temporary directory: /tmp/pip-build-tracker-9ubne2fu 2023-08-04T11:54:02,769 Initialized build tracking at /tmp/pip-build-tracker-9ubne2fu 2023-08-04T11:54:02,769 Created build tracker: /tmp/pip-build-tracker-9ubne2fu 2023-08-04T11:54:02,769 Entered build tracker: /tmp/pip-build-tracker-9ubne2fu 2023-08-04T11:54:02,770 Created temporary directory: /tmp/pip-wheel-29a4wu3w 2023-08-04T11:54:02,773 Created temporary directory: /tmp/pip-ephem-wheel-cache-9fivwq_t 2023-08-04T11:54:02,799 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-04T11:54:02,802 2 location(s) to search for versions of pyhmmer: 2023-08-04T11:54:02,802 * https://pypi.org/simple/pyhmmer/ 2023-08-04T11:54:02,802 * https://www.piwheels.org/simple/pyhmmer/ 2023-08-04T11:54:02,803 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2023-08-04T11:54:02,803 Getting page https://pypi.org/simple/pyhmmer/ 2023-08-04T11:54:02,805 Found index url https://pypi.org/simple/ 2023-08-04T11:54:02,868 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2023-08-04T11:54:02,986 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/24/b9adc93653b83e3aa333588f8fe80cf6a058b97497a1a722e7a2cf5bc5b3/pyhmmer-0.1.0a1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,986 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/5a/594c4415860394f14b94137e10f3b6264fbd452a9ed00371fef870bdd68e/pyhmmer-0.1.0a1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,987 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/fe/4cf2fc8c5eb288fc72cbbc151d6da1b6f6e73fcba66842ed40532069902d/pyhmmer-0.1.0a1-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,987 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/c9/3f46d702c63e188539c28555af361e58ead4bff416799042c5ecf97805cb/pyhmmer-0.1.0a1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,987 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/12/f5d1ef8114cc5e0ab890d562768e9a6eb253b3e3bf258f8105c1d1841c73/pyhmmer-0.1.0a1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,987 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/b6/b92f44fcc712bc3dd621eccefe34d569a17f0ae73133f352a47fb2029c44/pyhmmer-0.1.0a1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,987 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/b6/0ca49ee6803d761eefc93528e9e8106151e06acf77ba9f669275c01863ac/pyhmmer-0.1.0a1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,988 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/0d/e2e21b3925af6887baf35a3e8993b5fe4863d93638138e7d5f236bcf2197/pyhmmer-0.1.0a1-cp38-cp38-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,988 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/3d/aac55b3f74ecd81ff3f619083c277ba40df45d8e6b8fc19d58eb74fab09b/pyhmmer-0.1.0a1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,988 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/cc/11cb714fad98ed3c1689ce83a31a29d744ed34c822af3ae63b2450e6b159/pyhmmer-0.1.0a1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,988 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/39/ca6e515c639a28632e52579a75aabe22d6bf2fe2a66cb2bd407fea81a1fe/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,988 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-04T11:54:02,989 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2023-08-04T11:54:02,989 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,989 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/a8/b31471655d0f09813748c9d8888587e3a1e1573f0c01c748676d03cc3c51/pyhmmer-0.1.0a2-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,989 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/1f/4b3aef73b2a9d4e07d56700a1a11794e6c92dd9018c1008b53e6c0e903ca/pyhmmer-0.1.0a2-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,990 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/83/a386d9e2350ec96fe9d0c6d8c274c72afda82745e5586926966b0c8e678f/pyhmmer-0.1.0a2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,990 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,990 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,990 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,990 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,991 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,991 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,991 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,991 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,991 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,992 Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2 2023-08-04T11:54:02,992 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,992 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,993 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ac/a6/5d0240be2817e6b3c876493903fdf300a05a4d27ab4ce3e71a86bb4e6e47/pyhmmer-0.1.0a3-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,993 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,993 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,993 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,993 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,994 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,994 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/67/4cb6f3ff89e47e060598f940d771799fdd7b1427544cd8da94ce895e9e4f/pyhmmer-0.1.0a3-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,994 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/61/e5f4b60a3ea29110b78672a95dac9bc165727c96732e34868f249e3422e1/pyhmmer-0.1.0a3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,994 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/37/df/8c9ccb8baeec522b05e956beaf899596ada02a3b383dc7a8d259b69e825b/pyhmmer-0.1.0a3-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,994 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/78/7cd9016de0f1aa1ee2da0200224cb886959e62cb97c933553cdc7fd2560f/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,995 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,995 Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3 2023-08-04T11:54:02,995 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,996 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/48/3c/336700ba033d737f5e839fd63e3f0aa4946a66870f7d54f3825ac34c1a95/pyhmmer-0.1.0a4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,996 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e2/af/ed96bc98aa7c04aa0c1ecdc7bc2ff90a6fde3d4f323c23509e56a205d93d/pyhmmer-0.1.0a4-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,996 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/6e/4829b621577195c923ae8bf3efa95925bcb93478bee8938818043597c926/pyhmmer-0.1.0a4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,996 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/90/3f2cc3b8d0d2400b4cb21655f124b1704f0b71b05a0680f6671b19ec566c/pyhmmer-0.1.0a4-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,996 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/bc625da5fac25a825470749a1a0465f15cceb4c702cb9efd8b69e76de5e7/pyhmmer-0.1.0a4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,997 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4c/35/22c6cb71edfcb82ef9d649d3adb11574f1f1ec930491242295c3916e7572/pyhmmer-0.1.0a4-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-04T11:54:02,997 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5b/ec/8fc61155ad090117ec91574677ffe7be2540b8ac1eda05aac39b04b2baf7/pyhmmer-0.3.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,027 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6f/af/d847ec7dced017b36394aa1f1b1322f561b68831d0c82c5ed4198c10b4c6/pyhmmer-0.3.1-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,027 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b6/2f/ed4c88a0ff74bce8781ecc75dd6d34d6d6c4f7dbb6f8fc7538812fb1bcb8/pyhmmer-0.3.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,028 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/74/ba/2071d1002491f10b45fe057f8707b7f879546443a18ed0acb9a9486d3033/pyhmmer-0.3.1-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,028 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e3/1c/ac254f0a00b9739d4587df65f030cd15783f57feb996470cd4664e24e8b2/pyhmmer-0.3.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,028 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/fb/d87f9c26a4b58ea330e7936c4f59f0d8ecfdbc1e76aed60eaf5dd29f04ba/pyhmmer-0.3.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,028 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9b/00/3a84465ed08c531aa7fafc575f16840c94a75bba9ab4cd2b46e906f0431e/pyhmmer-0.3.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.3.1 2023-08-04T11:54:03,030 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/19/9d179de61801cf015e36b58915320bc456482b86001c9e5de25cf56f7e69/pyhmmer-0.4.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,030 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/05/7fb226eb9c2131dd60bd56f0077e006a4e51da51272d92163b62ca4f8eea/pyhmmer-0.4.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,030 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4a/3d/aa40c222382ac833fdfa24f9bc443dd5bfc0e0ec44ad401a6df701beb555/pyhmmer-0.4.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,032 Found link https://files.pythonhosted.org/packages/b8/54/9ebe75c4056daa0c0eb9f2b11fe62361d3a8b5e54818a528d8ca509e8986/pyhmmer-0.4.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.0 2023-08-04T11:54:03,033 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2a/f4/575177c27da35c5052bc8cfc63454f7af5b948e89f3d9350cb061c3fd679/pyhmmer-0.4.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,033 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a9/bd/08e876d81d61cd14279d7cc453060e38df9c59282b389c2789bd7742813b/pyhmmer-0.4.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,034 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/84/f5/5f83239790be66db9ea89781295020172d20ccc6d1262f4064dc2c1170cb/pyhmmer-0.4.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,034 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/35/55/bd514b80616381411b763ae1a275d384bb2261abc06f8b32e95dedf7aa37/pyhmmer-0.4.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,035 Skipping link: No binaries 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https://files.pythonhosted.org/packages/8a/aa/09b2d512f1b75ed279317eba38e320204f0cfa49094f83211aede16286ce/pyhmmer-0.4.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,036 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/21/3a09a81de850eb81ab720eb05bb1d1362070b1cbbc6a6b7b1edf701920d4/pyhmmer-0.4.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,037 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/43/19411901fe99dd7038ebb98fabd2b79062b2944bec551d0b06bd9909adc4/pyhmmer-0.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,037 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/15/c9/ffa040555c4ae3673221436506c8c272c22a53bd9e6a54efe0157d9c2972/pyhmmer-0.4.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,037 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cb/06/a2fc008cfdd553285325cf8373f3b6af85bb7cac0e294f45948bf1f282aa/pyhmmer-0.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,037 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/dc/0ed9ba672cc508bc15b4faf62a6444434e824ded77cfaf60662d90cb9601/pyhmmer-0.4.2-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,037 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9c/5e/212fe49995ccad358150012abf2da8ffbc25f024436b6fdcc89173e95b32/pyhmmer-0.4.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,037 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/9e/486d5da6d404842d00eabfbb1d7a25ffc0c49503dd7d267f1a6a701840e5/pyhmmer-0.4.2-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,038 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/88/b8bb0c20875f4638bb7d600c4c3dc65eb742b3a9833c730aa4915e94aa9a/pyhmmer-0.4.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,038 Found link https://files.pythonhosted.org/packages/2f/93/fa15885ede25f87ac2fa5e2cef12831bb8747b7e8455982ca2942ba61c7b/pyhmmer-0.4.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.2 2023-08-04T11:54:03,038 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/da/5e42fc076686aab8588bafb9d3e5c97a6c8bb4b24060eb943836c303cf11/pyhmmer-0.4.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,039 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/50/caff34277134400d58687859f224f34e88a6aa7abc6b3371150c3997f7a1/pyhmmer-0.4.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,039 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/43/726fc37dd0ece9c81780c9e29b90be4493693f4c6e8edde68b3cf8189125/pyhmmer-0.4.3-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,039 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bf/5f/6a88535a37b4de01584d62e008fb415adbe3f1440950dabba648943aa3c1/pyhmmer-0.4.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,040 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/6c/ec2ff99e8dc22520805ecf43ff22369a1ca0228cbd6fabfc3de0d7695481/pyhmmer-0.4.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,040 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/9a/8df126ab5ccf2278e9b3414c26f53bf01b480164abcc11c9d2d56d9f67f4/pyhmmer-0.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,040 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2d/63/9e0ac76ca6baae6f288983a7af56de078773b5c0d61004419d1319197f61/pyhmmer-0.4.3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,040 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/30/05d945cce1855035b4bb78996bac7ce0e371e2dc82b186147e36d551e1d0/pyhmmer-0.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,041 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/94/cacfb35c7ee944e9b9dac2ba8ef20cc192958cdbf1e4e223783152251a7b/pyhmmer-0.4.3-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,041 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/ba/e2347228e6bc83d22820f46bf33ed8558ce1128a60128edd2b9bd770078e/pyhmmer-0.4.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,041 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/9a/d5447b14a91a994bd2ec38a1a4880c29c93bce74e1aa7a328a794901a870/pyhmmer-0.4.3-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,041 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/eb/87/8074c4e8896b87ef161b2490f525315f70c4783e567cfc15679bdab1f059/pyhmmer-0.4.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,042 Found link https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2023-08-04T11:54:03,042 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,042 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,042 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/07/f0/066382b4d9e67ee4df32b0ea99a0d499739b31375505b28d87efbef0d7ce/pyhmmer-0.4.4-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,043 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/aa/2be9a4c359b3cde19a49800e85813b5f18f1116c5f7fb828f12f2b3d6102/pyhmmer-0.4.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,043 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e5/94/33f25a0d8f7761ac55acd5839c50078efe810b1e1ae0006113ca92c58d90/pyhmmer-0.4.5-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,046 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a3/c5f8dd1e931959d9c38df19fc937c6cf8568174e30ea2c2a86849cbd4b01/pyhmmer-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,047 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/36/0407821105d77948e7d703ee4aeacd2cead5cf317179db06508f7cdf7ce3/pyhmmer-0.4.5-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,047 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/c3/4c/926f71ac0913fbe2426f5f3ac8071edb4e700591b690c4acbaa7b559fb38/pyhmmer-0.4.5.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.5 2023-08-04T11:54:03,048 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/af/85534ee68bcdcb07d92d7630536659edaf435f0e7f8784189c53af637228/pyhmmer-0.4.6-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,048 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/03/d3/691d493cfc4d37f8f099ec52179d86fffaed4c9e3a6b9d76f6a3b5cf0e27/pyhmmer-0.4.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,048 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/f0/343198b3cebda51800efd71bc6001f5754a69c364da0f5571a5c4e91965d/pyhmmer-0.4.6-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,049 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,049 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,049 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,049 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/57/9941d06a569a34685928406e5b5d47819417a2379a26233437ca53a3484e/pyhmmer-0.4.6-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,049 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/87/171796b7139a8a44ba960344487f474d65bb5f16c21a088bede3d3cdec33/pyhmmer-0.4.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,049 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/b0/5d0f1b002f50fc531485e8691224de277d329d293bde922a35f4659e73b8/pyhmmer-0.4.6-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,050 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,050 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,050 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,051 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2023-08-04T11:54:03,051 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,051 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,051 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fc/d9b9efcc7b21381a3fa0c4b83e083c9d0b406868846054b989d105c301c8/pyhmmer-0.4.7-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,052 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d8/6f/d70ebea12581688dbcf180b983186e3d3a8ad2325cc8691c837276bb3e67/pyhmmer-0.4.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,052 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/95/57/b2ed0c64308941872e2535eceeafb737b4871e507d54b5d68b6ffc02f8cd/pyhmmer-0.4.8-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,056 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/40/22/099da301d77a3f512bde56a54fa5272e937818843f8be96aa46089071f4f/pyhmmer-0.4.8-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,056 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/76/477e37aee671104bb5d1022eb0ff641ce700d639a36961694ba9710af8b9/pyhmmer-0.4.8-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,057 Found link https://files.pythonhosted.org/packages/5a/91/1166980fd7eb5106ef2f34ede5ae0043daf2f276f05b0e9f93cc2d968827/pyhmmer-0.4.8.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.8 2023-08-04T11:54:03,057 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,057 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,057 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,058 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/07/442980e0fc7b4d336157fd80d843b3ad0b71709087b0daf910f2beee93cd/pyhmmer-0.4.9-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,058 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/41/f5b4ffcedcf3116573ff5740de4877723f0d69b7527ece4a794069de2235/pyhmmer-0.4.9-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,058 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/78/a6/d21ba62d70e38f7b3829c69be9179cea416599a8ee952c8f4ac5503bfd04/pyhmmer-0.4.9-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,058 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/53/6428ce4322f6af35747f3f7c3829ebaeb05bab2eae6d5ff39c46cb1455e2/pyhmmer-0.4.9-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,058 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/b0/8daba4b0c9507fac1725a9005e88e8560b66e15d1d29a422980ae2caf987/pyhmmer-0.4.9-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,058 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/de/1d/76c728871c542de627e56683ecd2768bad8019744f575bdfe037fbf7889a/pyhmmer-0.4.9-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,059 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,059 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,059 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,060 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2023-08-04T11:54:03,060 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,060 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,060 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/ac/2db59c94139155e1241fabf650a8f30b238a68d13ca40014a75aece65b74/pyhmmer-0.4.10-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,060 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/06/ad/aaeafd77e0037312873a136a3c2165a5eab10ae37f56cb60b8c6de7442b4/pyhmmer-0.4.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,061 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/87/24601e2b81fedba09b3a003fd1e4fe78c8cd252767663acd9dbc63d1784d/pyhmmer-0.4.10-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,061 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,061 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,061 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,061 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,062 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,062 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,062 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2023-08-04T11:54:03,063 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,063 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,063 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/76/0ae3492a40179ac43d453b37b8a3d19bd58c3ca762013eca94aeb9592873/pyhmmer-0.4.11-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,063 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b4/dd/1f02cbf6cda0a82564cab00b63fba1904fc98be1db7c09e8eb2084b322d6/pyhmmer-0.4.11-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,063 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5c/54/4cba0bf00660fb32bc4e76006a76b20eaa4f694f49f37994995c6b0a4e1e/pyhmmer-0.4.11-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,064 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f9/71/f2d8518120e117fdb842d13e7714678c40692bf60bce01e54c883625a1f1/pyhmmer-0.4.11-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,064 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a3/91/02307afd6d26f1423cfd8f46dd4b070a7e4c84ad6d00524e5f86f22e5fab/pyhmmer-0.4.11-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,065 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/87/c0e6ce633d6649cae526c23260219fb911e2c3da891eb2485a5b6b8e6cb7/pyhmmer-0.4.11-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,065 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/61/d7/a415042ae43b7a13fbcd1a3295a8b8189029e7baeede92ab82ce597db36e/pyhmmer-0.4.11-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,065 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9f/5f/1fd5587437c9e6331fe7a1d85d11d1e7d71fd21e068d1f0800c30bd2d0ec/pyhmmer-0.4.11-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,065 Found link https://files.pythonhosted.org/packages/65/f3/1de70443d58ccf843aaaa01393d640452e26b60912c0998302a0b8fea021/pyhmmer-0.4.11.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.11 2023-08-04T11:54:03,066 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/90/24/136abcb4ad189a00cb41409d3887d892a8764231aa863c0e9d181952c989/pyhmmer-0.5.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,066 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/97/5a/9983f2ef20d457d0065c12d96103c9ff25581089fc29478f2d387ede8007/pyhmmer-0.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,066 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/b4/6a/8a3467282158fac08ea0dc646378789abe5dfa9e77af5f25a1fb658e3a3e/pyhmmer-0.6.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,071 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/24/e5cba7b51dc391c8bc45dd7f98e61804088f8cc35346b362dedc94fae471/pyhmmer-0.6.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,071 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/ad/68a14e424200099462bd97c58fefe3b428a6522ae11b2e2b195bbbd6d15a/pyhmmer-0.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,071 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/2d/cd5b9729a37b0cdbe932461c79f74c75d17ac665f080f95633a8c275852d/pyhmmer-0.6.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,071 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/e9/3a1f5a5aa46b482a3bca632fff9cb173c91ba5f02a96a3f5c0d730660519/pyhmmer-0.6.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,072 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7b/72/119583107572a60f86e0f8578a7bf5d03928eeb3107d3e469336c5c41245/pyhmmer-0.6.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,072 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/8d/2743d1944b793b1182955de2143776ec786c239e6c69fb8da18fb4db17ed/pyhmmer-0.6.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,072 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/e5/7dae65e0e3f3724535d49307db46975b4eb1bc62cc77a1b2dd26ddc308a9/pyhmmer-0.6.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,073 Found link https://files.pythonhosted.org/packages/66/34/775e5243113c2d97ae0ed9e6a39f145549bf85c6215840b728fa9a3f6b89/pyhmmer-0.6.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.0 2023-08-04T11:54:03,073 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/11/2e/dfd760137a8b144e2341a07ca54ce170a83bd4982641ea31ee90fdfd0837/pyhmmer-0.6.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,074 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/63/7c21fe2dfe3cf76c8696fd612327733e3d985161cf70f255937433c3f6aa/pyhmmer-0.6.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,074 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6d/c0/91f4f28744b8b7f90f729b3f06b2732ce1c6fb354e6643585f4d5b9fc5ee/pyhmmer-0.6.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,074 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/27/82/c9dbdf556c27204f3c7452f3dc6360b3d6a5a7a9d139a6dab992a0a33af6/pyhmmer-0.6.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,075 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/ba/e4a5a835581363c1a6809656518b2b5bf2b668d0cc8bba6a91aaab864023/pyhmmer-0.6.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,075 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/60/bd4cf94201733ee99960638e205d34547e1814a7fb95d2d5fc84df6c6423/pyhmmer-0.6.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,075 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/53/f6a6fd098e6ac64f2c0060e2e8696e573197898751b42fde2887ab62fe73/pyhmmer-0.6.1-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,076 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/09/be194e9996ce5b9b250af009792194de38d5f38537a07b787d77bd7c2020/pyhmmer-0.6.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,076 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7d/6b/d6adf535b346904db4dad94b57101d495fcb2a1ba2b0cb9a2b9b5c11aee4/pyhmmer-0.6.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,076 Found link https://files.pythonhosted.org/packages/cd/14/0c156809b9f92d3b0e7af334b0978392f15b2247c4bbb12c16d8f09a05f9/pyhmmer-0.6.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.1 2023-08-04T11:54:03,077 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/58/bd0cf943e8530a77288c09068655fc165b0c0b8e92c13a504236cef318f4/pyhmmer-0.6.2-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,077 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/7e/0ae123e0917f504cd5a286eef569469a4da0bdcd9c8dd2472c95b9cd52d0/pyhmmer-0.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,077 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,079 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,079 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,079 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,080 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2023-08-04T11:54:03,080 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,080 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,081 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,081 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,084 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,084 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,084 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,084 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,084 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,085 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,085 Skipping link: No binaries 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https://files.pythonhosted.org/packages/0f/68/dd15664d24aceaef5e94f961bffa45d9095d8f8499d64e78eddddd1ef7a9/pyhmmer-0.7.0rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,087 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/01/cb2f9126a8cc8a16f12651d80cad00f1c285451ba20ead2b461bb86ff5a7/pyhmmer-0.7.0rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,087 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/16/5269fa02ad5001fe304296e4de68cc3b316981363a07e0f620d034520e33/pyhmmer-0.7.0rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,087 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/49/77/4a2cfc97cb2432d41d16bb851e01360e3f6fea5579c153083220927e779c/pyhmmer-0.7.0rc2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/19/9f/c9bd67b4506ea74c87aa2170245f52a7ef31d9ab0091c1f341c6cf76fa9b/pyhmmer-0.7.0rc2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/03/ee7fbc006cfd40bacc68f90e34ae6c0648eeb66e63f1702c57a595f23beb/pyhmmer-0.7.0rc2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/f6/b77002e48c526bdb1ec0bee0697ee021f31702ff7618adc1f7c8458638d8/pyhmmer-0.7.0rc2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/56/143d6ec67af6539abafac7d5ed7eda2f7dc4a22dc7ebeeb491a808a923a7/pyhmmer-0.7.0rc2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/35/66d385727a9178511182bfe841a12d45f7f64425fdfdd9ed0d93e6a74bb8/pyhmmer-0.7.0rc2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e4/d8/d5d5bec33f7ef7e4162e43e846cec992055d17864c098a1e55b96a34050f/pyhmmer-0.7.0rc2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/39/c0/6a46e969f7c1f77f5cc19011827469176b0569cbee1f2ec80f5865f49ad6/pyhmmer-0.7.0rc2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1c/92/5602f15a7bbb92b08e92e4636813015754067aa97c0511ea1801852c1e66/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/ff/ece5bd11cf4cc3ec6f664f0e3a111ad6dcf207d3f6ec2ad96165259a412b/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/d2/b4d94b6921db1e4c69e9f41bb559d66fe18a2a098cde1e6434706e1eabc6/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,093 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/55/c39dc94317204fd84d5d8bbb6aed951be0706970eb5e3998aa0a4a35f46b/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,093 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f2/b9/46f7e47792b6dcd5d3330313efceea13105448ae6f6cb13af72cb60427d1/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,093 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,094 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2023-08-04T11:54:03,094 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,094 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/8b/45d7eb18b457d0a36bacee35ad14a52af74c6ad5eab2901492996e9aa4b7/pyhmmer-0.7.0rc3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,094 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/75/25d2b67c70032fd8201bcead370e87316ed0531854aaf2b9f3061623fe33/pyhmmer-0.7.0rc3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,094 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/f3/a6f3b814701a7fc0652810dcdeaaf6a60aaf90d30de21ca7c2fb873b5762/pyhmmer-0.7.0rc3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,095 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,095 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,095 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/ed/b906f6c410f04eecda1943c731e45a73448a98ce8ca04984bfff107b217d/pyhmmer-0.7.0rc3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,095 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/1e/19f92118d755272eba30bfa611635be0d67428d65dfc5c5ecd544e45e0ad/pyhmmer-0.7.0rc3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,095 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/2c/bf48a68a87561fa1e263ca6cb00d1345794280070dd484845aa2d4cf8844/pyhmmer-0.7.0rc3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,096 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/48/67/2c8cd7621f44f1cd92ec244a9463c00c90f02a1fd5efe1be5617828055cf/pyhmmer-0.7.0rc3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,096 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/73/a2db2e27de1d9b6006d6db695b5238e850b9431ea7c57eea6988a6664b31/pyhmmer-0.7.0rc3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,096 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/35/599a1e9f081d8e5daa34f62c9225012ba906ae872d426f4b74a3a9d5b4fe/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,096 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/d7/389876620f3b9fe1feea99c9b6b482d8b1f115671c06fbaa92bda816c189/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,096 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/90/e1/dcccd398039ac13a2a23114fe29ba40a1270c0498b9c7d15dccf098d02db/pyhmmer-0.7.0rc3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,097 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/22/86eaea1f4be5e5dd587f216169ba9f7a445b166b719c4fb364df45cf5eb8/pyhmmer-0.7.0rc3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,097 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/71/e5/96ce896b08d17b9114817c947683e144e760f58bd9f48f53f5436ef25079/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,100 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/a5/aa8fc0a41d66c95b60097ed9aa5d11cd9b1be853c1ffafeca1e42f1095b6/pyhmmer-0.7.0rc4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,100 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/7d/284867ffb3cd7eac7de62716e1dbb495331004766acf8f49419f0d04e103/pyhmmer-0.7.0rc4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,101 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0f/e0fdfe3a3872753e8205280a83f8bfb09cdd56050bfb84137627c905bdc0/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,101 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,101 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2023-08-04T11:54:03,102 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a8/5302df454773f5b6a9dc9c29d540b3195f8d10ea47773bf5ba2fe934c065/pyhmmer-0.7.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,102 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3c/74/ee460564fd2c0d9404e75649c4a5e476d962c37b018de89592f7960d1325/pyhmmer-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,102 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/e9/3d4b55e50c0815ec25f18e367982e588bc84033e6b8d5417671210214dc5/pyhmmer-0.7.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,102 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7d/64/775e2adae614da4f3481e035153058f95338913b433d82a2b295e672c753/pyhmmer-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,103 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/f9/c669b9adabe8996277e8a2bb6f08568509ea95cadfcb76121150d24b5f93/pyhmmer-0.7.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,103 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4f/54/985dcf1e22569b0904bd17b1f17e713dc94a7ab13b767c9f5d90f54daba1/pyhmmer-0.7.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,103 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/04/5277c738b8789802cf308662e7eb69535a5dc04d77088937cf749173c7e2/pyhmmer-0.7.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,103 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/cd/2ae79c367d9ac8df13d62cd7a7c33f8ae37c4b7084886825e616862fc7c3/pyhmmer-0.7.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,103 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/12/df/5d0e476aab5fa0fa99313e9f2c1d641690381724e8d691a4fe42b7734b6e/pyhmmer-0.7.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,103 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f7/af/dc4680fa932f2bf899f08438eb08bd271f2602454a0a0a8a2fede8bd2abe/pyhmmer-0.7.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,104 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/51/03/a89c205cef3d63d140049a204977c5903adbcc2fffcd37f903a155fa5cc8/pyhmmer-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,104 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/47/eeb9204615d3acf39fe7ba1f5d0209d263c747eac405ea97e3ac6428c7a9/pyhmmer-0.7.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,104 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/c8/273b776dc57d54b80741592ca6aee62fb31982f4ead0bbc1510a3d89f95e/pyhmmer-0.7.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,104 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/15/3005213eddd959f34442df93ebc4e44c28bb223ad9a7fa407ecc8b788e92/pyhmmer-0.7.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,104 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/e5/abea9b8c2217a67965d536d91263e89b9e1f896b54608a9e1354e6b4f38f/pyhmmer-0.7.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,105 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9e/17/03f003657c307cd45ab90e60c6ac65a72b895610952fcc41bcbb16c20013/pyhmmer-0.7.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,105 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,105 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2023-08-04T11:54:03,106 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/93/13708d5362f3eeeae6bb9dc49dd033e78b2f36556581dff3a1a4c8944b9e/pyhmmer-0.7.1rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,106 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/0d/38ef5d23d1a5cb2a9fa802be2e3e5515584db19a9e4b571fd287c7ea3bf5/pyhmmer-0.7.1rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,106 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/de/81f869083b51909d42e48df30c28685c811f59c21f8ca42a4bc565ede604/pyhmmer-0.7.1rc1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,107 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/e8/add2c7bb63616995f729fb215fad8dc578ac8de57e469830f42878e52a32/pyhmmer-0.7.1rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,107 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/6a/b83eeb054f43e80c0cbe6877314d2a581b51252436da6a0b91fed65482d3/pyhmmer-0.7.1rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,107 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3a/cb/fcf2cdb81b840f0d81299dad023301851aa18832f2dfd9f35a6b502f4ccd/pyhmmer-0.7.1rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,108 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9f/b1/88afa91956eb78f5b19f3e44fabef47e0bc8bd2028c33c2f1740a2ddf406/pyhmmer-0.7.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,112 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/a9/acec031f4435e796440521c54f78f978cf91203615c29b07c7c9697840e7/pyhmmer-0.7.1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,112 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/65/16/57009ec67d1b33dc1bddfd40c054d0fa2ed0970c357249b81ca9b2c80ac4/pyhmmer-0.7.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,112 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/77/bde94d470ac47242abc0754a02a21311339c2d4fc367631d91a940946ab1/pyhmmer-0.7.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,113 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/d3/462aea5aca8f8169bee7b77b380d0221bb8b452e07b54967b352fc9383bd/pyhmmer-0.7.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,113 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/a2/173fe1c90b803e6bfef9190ece6e479552be0f8afdb606e8639d543a35df/pyhmmer-0.7.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,113 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/45/64/476e25cf2eb37d76881022a6c42c8da9e06a93b1af51fc596ede5c6d68ce/pyhmmer-0.7.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,114 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/22/b0/978fe1e68b3bdcfb1662358de0b11229dcb0af7b04fec6efdabe0270389a/pyhmmer-0.7.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,114 Found link https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.1 2023-08-04T11:54:03,115 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/53/8f/886997e0b208edbab94576eb4dbfcd56dcac054700f7246a15300098e210/pyhmmer-0.7.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,115 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/20/82e0a7504688cabb764417b4d141b0bb96f86632b8e499773e0dd391c9e3/pyhmmer-0.7.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,116 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/d5/e46bec7d9e8c5e242f7f6c3286f8af3bc2ae4bf9ea42d91e1f8d426b7561/pyhmmer-0.7.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,116 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/dc/9356b86de2f272c8e0cc4f577c72d3ae4e86727e26491f80cd8dc8063a9a/pyhmmer-0.7.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,116 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/36/5fda154acd4dbde82c5f8ef5d4bb2532707c8b6b1138645673773ac139f8/pyhmmer-0.7.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,116 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0e/e2/f830bf6972a294569182d6ea4026af2a902fd6cdd6f06dd0ed62bce231e5/pyhmmer-0.7.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,116 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/39/0098a2887eb2db25c5cd259dc8635beca3b1aebb18d56b95fad851592223/pyhmmer-0.7.2-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,117 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ad/cf/b678ce405273a64b4295f73a3357e988b2bce163862a9730a4b81650c626/pyhmmer-0.7.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,117 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/27/44ffc8ed4f96c4c5cc2fef672cfb66c9d84f1f26bc903c812b0b4fa4d673/pyhmmer-0.7.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,117 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/c6/c57c9f59c6d5c6e177aee95307f863bd058585dd0b0bfca4c34f7f13cd42/pyhmmer-0.7.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,117 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/db/4f93af5a00686347346a325ac84cae95fe6af81681c3489c83ac27629862/pyhmmer-0.7.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,117 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d1/f7/4bbda84916bb53d5427da8950d2c057db73fccdc33c632c941c524cdb53d/pyhmmer-0.7.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,118 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/03/cad0781ef73c4f4f52937840947c8d49cf2b2cbbd070c44b59e31d263a69/pyhmmer-0.7.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,118 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/15/65/80d52997be40674fd2c69b9828b058760e41b776b78af40a72902b86acd6/pyhmmer-0.7.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,118 Found link https://files.pythonhosted.org/packages/df/a9/2657add69b3315c419cb618bd3d7fd5980a6b0f30599111e6ed64ca3cef4/pyhmmer-0.7.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.2 2023-08-04T11:54:03,119 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/43/c1/73a9f4bc5dff132e66d44aed2c65fe49d803345383ad1ce3be8263b90e67/pyhmmer-0.7.3-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,119 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/81f51877f44a77d141dea4b76937158affd960ef965ebfe0b5c13402a8f9/pyhmmer-0.7.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,119 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7a/1d/f1f7d1e4f936603678831b3bec693038ae09d7efd6eebd1324d0942c1659/pyhmmer-0.7.3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,119 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/68/6fdcccd7979cd0092039016c3eac4caa02a11c1d3890ab0951311cc07744/pyhmmer-0.7.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,119 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/a2/b2a5784e37a247475e4a58816ccceec0734c5bbbc1a9a231306fc6735d8b/pyhmmer-0.7.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,120 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/96/ea0e67c0fd99012756abef527adc30a2528315cfb75944757faad9b78c27/pyhmmer-0.7.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,120 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/62/49/d59f2cc10afaf02538988eae5d76975a0d402a2b641fe161d46a5a3a5b62/pyhmmer-0.7.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,120 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fd/74/2dec67a4756891cf0b45fa2ed3a1ca0d4a06ea3a3064090d20cf0f47e162/pyhmmer-0.7.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,120 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/04/8a/c3403218b9a93886aa949854a90b7ccf6beff39c85a0f4f722f31811202b/pyhmmer-0.7.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,120 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e2/db/62121a05d99bb99e7f14f0fddb97e82ae2bca48c891dd16d09f99b3eceab/pyhmmer-0.7.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,122 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b3/56/a1d60989df6dd057fca1566c4ba98373572236c886241e68e96af82fe92b/pyhmmer-0.7.3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,122 Found link https://files.pythonhosted.org/packages/63/6c/9ba4ec4440099d30c4821e8740edb2340e6192b934e81057f7921666c1db/pyhmmer-0.7.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.3 2023-08-04T11:54:03,122 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4a/3c/13929dd0c58c62b1513bdfe818969e6f2ec4da023527b38565af60b91b8b/pyhmmer-0.7.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,123 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/44/2ca763c3a425e922554b8eb10113ceb8c195639c6fccea846da2551cd923/pyhmmer-0.7.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,124 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/40/7dc955411414cee0db769d602cb2e8d593707786c9572bec05721491c5a9/pyhmmer-0.7.4-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,124 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/26/b8f4f0f8c71bf51d30885978636e4281ce8130bf57136d2d048da93ae2a9/pyhmmer-0.7.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,124 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3e/63/5219330ab124df581bc1d23046ff5b43534e606e9bdcf2abfc10a50b62f9/pyhmmer-0.7.4-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,124 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/7a/7e3d72b99ff0cede0022113042bc09f911041437a8f80827103b660bcecf/pyhmmer-0.7.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,124 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b2/16/e251dd701b9f1d6a63e3cca421108fc6cebb8538a9f6869296c6644a0c2c/pyhmmer-0.7.4-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,125 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/52/de/a269128e8891b97841930cd8addac3595dff08c1f90028619f7c73359cc1/pyhmmer-0.7.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,125 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/f6/44c176d316f9becce866f4536f026e433df3939052b5ad922013e324c400/pyhmmer-0.7.4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,125 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/2f/8b471542f68ccfd607cbd8edd5416bb054c454349f72d1ec1aca4546ab64/pyhmmer-0.7.4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,125 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/5b/56febea19382034f45f8efd31e4cc025e88d47fcbf3b8a702e67daca65d2/pyhmmer-0.7.4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,125 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3f/4b/b94e77c892e9b6c656e753fe00a2e244dd63ceb1114004d3ab4c66940fc3/pyhmmer-0.7.4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,125 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/df/9b/9dd24babb7f1ef8a2fc26e39684ecc85193685b14cac93b1ab3821eada03/pyhmmer-0.7.4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,126 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/0f/687049e993619cf051ce153f9f5d195290f9df872a46ef5ed55f168cb073/pyhmmer-0.7.4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,126 Found link https://files.pythonhosted.org/packages/d4/83/1abac79f144f82424fc1e3959db6fda4d5cedc251d804b0bedbfca9b90b0/pyhmmer-0.7.4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.4 2023-08-04T11:54:03,126 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/76/9d254f4f85a2b15718dca73e2091837e359b3b19eb30d47ae15fc236c088/pyhmmer-0.8.0-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,127 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/4e/6698347f2848bf6e953daee133c6cc27fb7f340a1946815cc9566a3a3539/pyhmmer-0.8.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,127 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/72/99abe4102e7994572f8d786abaaa8974352e917a690e888c2becc89f93b6/pyhmmer-0.8.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,127 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c4/a6/2560bcdda70fda6cb767272851a84c700ab754bb3193ab4e7a077d10cf3d/pyhmmer-0.8.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,127 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/54/80/54e8e341dd4dbe26f6421db55e52a5381403c5a7fdb505b6348dc9661e07/pyhmmer-0.8.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,127 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/c5/7fd7e8f5418e609b6d6b12c5a24439943d85600a98ca94a248cfcf5aa1dd/pyhmmer-0.8.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,128 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/d4/0d65fae4b288faaec2eb9cc27db600a01dcf50be1ad4961904340e1b74f6/pyhmmer-0.8.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,128 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cc/73/fe5f2fab87655bb9eb30f9b6177b1d4b1593873d12960a5e4fee74d9c9f2/pyhmmer-0.8.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,128 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/17/8e/1161db151a5638878ffa1de64d6af0133a3a24400cd02ae6967aef498c4d/pyhmmer-0.8.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,128 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/2d/6d020e9303d2422ed199d3181a96117b25366bef87fd4e1d49f964644a72/pyhmmer-0.8.0-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,128 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/d6/df65848b5f3c3ea24a7a1a19fee4fd559377953d62e048bec4eba7b68043/pyhmmer-0.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,129 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/88/90/0f0af36b0861b542292872bf99696eb852bb2ffdae35e02532b924a91736/pyhmmer-0.8.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,129 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/29/5a7a4bd1ada554e49d34d8050ae571e5679f80fcae115ae2e4794cfac402/pyhmmer-0.8.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,129 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/2e/5a9fdfa2fa8e7896954ae2bdceea262ed56668704d442e7b4a8f2cfca534/pyhmmer-0.8.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,129 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/18/64/3883ac90e9e1cd3826a4ba4872af387f914b6879d76cb48e2ccca4d589ed/pyhmmer-0.8.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,129 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/5e/537eab68a1a757accf9bf36fb86913427225f548bc5b721852024f0c49ab/pyhmmer-0.8.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,130 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/74/63/648053f4d3cc6fe8f86473265e709fbdac17700a2618706e2eb83d219716/pyhmmer-0.8.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,130 Found link https://files.pythonhosted.org/packages/0f/5c/14aaa03cfdaaf956e079eb555c17b6307858b99f1c3f80ef027dbe3910bf/pyhmmer-0.8.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.8.0 2023-08-04T11:54:03,130 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/79/dbf1e41bb908bec699f5eabb989230c8758fb8075b7e4f9c2b33108178ec/pyhmmer-0.8.1-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,131 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/c5/01ab9a15c9263612433b128d1e65c0ee1f3cb18b9503c8ddcacf38837914/pyhmmer-0.8.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,131 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/4f/9013da7fe5689a83b3200fafe885b1bed7832a93160c7f53d4851d5914eb/pyhmmer-0.8.1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,131 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e2/5e/3d4df0d800d8be0c8f4a90d493404955fb3ff71cec1ade7bf3c032474b28/pyhmmer-0.8.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,131 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/28/46/5e13639f2d28bc37119046ddc63b6aa1b2ecc1cd911cd03c6de1bcaa2a13/pyhmmer-0.8.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,131 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/75/ed/e314f33388b55a21b4e2ddee8b3df2a38ff806af6428dcba40415b04b997/pyhmmer-0.8.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,132 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/e0/8f7d67c887b2acbed5d598e1a8a130b627e72eaafa483bc6314061ec8e53/pyhmmer-0.8.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,132 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1f/27/350d8e7551a1df76c4a4c21b2194f52f442fd6da03b1a7058c8a3dfe6c38/pyhmmer-0.8.1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,132 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9f/6d6cfc59ce70e3a74bdbbef07ab0a14d6586d754404d6b8f4f7baa0bd32d/pyhmmer-0.8.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,132 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/f2/1a/daef14e72d7b7115c814a9fcc2ff6c34cd79b777221d9b374e0452724a03/pyhmmer-0.8.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,133 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fe/6568f474e66ade3d023fd9c1a9d3e9c0d612eebb13fd2abbcaa32e0c07d5/pyhmmer-0.8.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,134 Found link https://files.pythonhosted.org/packages/3d/12/beb37509be629206b9ca05f631533271c4bc4ed4f52891f772ca1ec0219d/pyhmmer-0.8.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.8.1 2023-08-04T11:54:03,134 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/272986b394c29bd06766c742c2bb717747d0f10fe27b9d639878d0b91b7b/pyhmmer-0.8.2-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,134 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8b/7f/11a8225560199c6b92c062668c24691cfdf4d6803930ea51578c0ae0f2c6/pyhmmer-0.8.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,135 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1d/34/b23cdbe9358907f35c6cbf7af8fd223ba982372fa67842540d2a453bb6bb/pyhmmer-0.8.2-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,135 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/35/62/2dd4b543a1be28c87b20c0176c7f6c9793fec2f948c67dc4d9e15e920d74/pyhmmer-0.8.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,135 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0a/b4/d6842c31ab612714e693d13852d0b8e30877583e2c1e4c7a54e5072cf6e3/pyhmmer-0.8.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,135 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/38/04/689d911435b871b9f9beeed09997002bd8869a80efb217cd4dc12fa3be0c/pyhmmer-0.8.2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,135 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/48/aa/173348482e94cb75d7ca8140cb644583294a51c947263b075ae98d7d451c/pyhmmer-0.8.2-cp39-cp39-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,136 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/d7/8cbf5c5a3b14fa0ffcbf08c862f2f9e2ac6753be228af04e8feaf724b4da/pyhmmer-0.8.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,136 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/ee/d6c8985da391696aaa09eb694172201c1eead5f366a8e61790c735c525e9/pyhmmer-0.8.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,137 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/d9/4e2212224e53a8b9373c0831a3c16d115dce9c6e2c847c867a1f1b8284fd/pyhmmer-0.8.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,137 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/f4/28ed40514d1f483669b4f80de51a7c1770ebd84255890ea468f641ef17c4/pyhmmer-0.8.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,137 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/64/845f17d9680d7703d8deaa729141dd33da734b9602cebc224a7533c0f239/pyhmmer-0.8.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,137 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/7c/17274676ff47462404c50fd7d03eb2793ab33d0405fb8830c674f29cd7e0/pyhmmer-0.8.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,137 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/6d/1fd4669db2d3a14e80bdb59377b0a537b26fb98798cbce9a4ccc2943d5b1/pyhmmer-0.8.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,138 Found link https://files.pythonhosted.org/packages/f1/c9/c047535dbe805d92a3d6fb8b602f19728c4c91d897a4da2f8d46f5f83cc6/pyhmmer-0.8.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.8.2 2023-08-04T11:54:03,138 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/98/31/4b8b4631703b3a96ba4485306568c658f9f2d5f56161c705db8f695dec71/pyhmmer-0.9.0-cp310-cp310-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,138 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/01/8f/cd5c956a65373f873d4bcebd59546abf2103f3845b81da10d7897a9cfddc/pyhmmer-0.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,138 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/02/99/8e05a5b9a8664b7cf8a2c59f0b7f05ada19b30354fafcf0a240bff65fd79/pyhmmer-0.9.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,139 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/61/f2da88596a2295848c7698a913f4534492e9f78382d1aa8047f158619b3c/pyhmmer-0.9.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,139 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ec/3c/64df043166c02805c895acd8b1843d5a0d4f76ef923600cb4043441daa59/pyhmmer-0.9.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,139 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/13/127d07fb43f4b3b2889d73a77c0181a92a278ea6aefce0f8eb0811e73c15/pyhmmer-0.9.0-cp37-cp37m-macosx_11_0_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,139 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/f6/6e/71cab0cdd70654e1c245ae6ef4a691ceb97fbbf6cc8551c237add94b6a05/pyhmmer-0.9.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,141 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6d/8f/fc5251bc0c344176a4208ab7c7f56efc67d924c8ad9b5e3e7594efef517e/pyhmmer-0.9.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,141 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/22/25/fbf2e221b90b0297df47d1688c5015fdc62c831cd4b3b689eac524bf192a/pyhmmer-0.9.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,141 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/e3/e830f6d54ae9dd2e07c6e399d18f335749bda3e2eb608682494a447c8988/pyhmmer-0.9.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,141 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4d/9c/59beb6fbc6d19cadee582a096245e042f8c59d9cf8f7770a843cf66d0636/pyhmmer-0.9.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-04T11:54:03,142 Found link https://files.pythonhosted.org/packages/b9/eb/dcae2181c127c3cd8334a88b56729814e1aad5eb0f76c620fe87dc6b3043/pyhmmer-0.9.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.9.0 2023-08-04T11:54:03,142 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2023-08-04T11:54:03,143 Getting page https://www.piwheels.org/simple/pyhmmer/ 2023-08-04T11:54:03,144 Found index url https://www.piwheels.org/simple/ 2023-08-04T11:54:03,321 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2023-08-04T11:54:03,322 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2023-08-04T11:54:03,322 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2023-08-04T11:54:03,345 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2023-08-04T11:54:03,362 Collecting pyhmmer==0.9.0 2023-08-04T11:54:03,364 Created temporary directory: /tmp/pip-unpack-divrchdb 2023-08-04T11:54:03,409 Downloading pyhmmer-0.9.0.tar.gz (11.0 MB) 2023-08-04T11:54:07,009 Added pyhmmer==0.9.0 from https://files.pythonhosted.org/packages/b9/eb/dcae2181c127c3cd8334a88b56729814e1aad5eb0f76c620fe87dc6b3043/pyhmmer-0.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-9ubne2fu' 2023-08-04T11:54:07,014 Created temporary directory: /tmp/pip-build-env-byjnm70t 2023-08-04T11:54:07,023 Installing build dependencies: started 2023-08-04T11:54:07,024 Running command pip subprocess to install build dependencies 2023-08-04T11:54:08,190 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-08-04T11:54:08,550 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-04T11:54:10,206 Collecting setuptools>=46.4 2023-08-04T11:54:10,291 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-08-04T11:54:11,854 Collecting cython~=3.0 2023-08-04T11:54:12,623 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.0-cp39-cp39-linux_armv7l.whl (10.6 MB) 2023-08-04T11:54:14,691 Installing collected packages: setuptools, cython 2023-08-04T11:54:20,118 Creating /tmp/pip-build-env-byjnm70t/overlay/bin 2023-08-04T11:54:20,120 changing mode of /tmp/pip-build-env-byjnm70t/overlay/bin/cygdb to 755 2023-08-04T11:54:20,122 changing mode of /tmp/pip-build-env-byjnm70t/overlay/bin/cython to 755 2023-08-04T11:54:20,124 changing mode of /tmp/pip-build-env-byjnm70t/overlay/bin/cythonize to 755 2023-08-04T11:54:20,146 Successfully installed cython-3.0.0 setuptools-68.0.0 2023-08-04T11:54:20,159 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-04T11:54:20,159 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-04T11:54:20,485 Installing build dependencies: finished with status 'done' 2023-08-04T11:54:20,491 Getting requirements to build wheel: started 2023-08-04T11:54:20,492 Running command Getting requirements to build wheel 2023-08-04T11:54:21,206 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-08-04T11:54:21,410 Getting requirements to build wheel: finished with status 'done' 2023-08-04T11:54:21,424 Installing backend dependencies: started 2023-08-04T11:54:21,425 Running command pip subprocess to install backend dependencies 2023-08-04T11:54:22,577 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-08-04T11:54:22,937 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-04T11:54:23,372 Collecting wheel 2023-08-04T11:54:23,391 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.0-py3-none-any.whl (64 kB) 2023-08-04T11:54:24,881 Installing collected packages: wheel 2023-08-04T11:54:25,106 Creating /tmp/pip-build-env-byjnm70t/normal/bin 2023-08-04T11:54:25,108 changing mode of /tmp/pip-build-env-byjnm70t/normal/bin/wheel to 755 2023-08-04T11:54:25,121 Successfully installed wheel-0.41.0 2023-08-04T11:54:25,134 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-04T11:54:25,134 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-04T11:54:25,342 Installing backend dependencies: finished with status 'done' 2023-08-04T11:54:25,344 Created temporary directory: /tmp/pip-modern-metadata-ys5xa37m 2023-08-04T11:54:25,348 Preparing metadata (pyproject.toml): started 2023-08-04T11:54:25,349 Running command Preparing metadata (pyproject.toml) 2023-08-04T11:54:26,039 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-08-04T11:54:26,187 running dist_info 2023-08-04T11:54:26,199 creating /tmp/pip-modern-metadata-ys5xa37m/pyhmmer.egg-info 2023-08-04T11:54:26,204 writing /tmp/pip-modern-metadata-ys5xa37m/pyhmmer.egg-info/PKG-INFO 2023-08-04T11:54:26,207 writing dependency_links to /tmp/pip-modern-metadata-ys5xa37m/pyhmmer.egg-info/dependency_links.txt 2023-08-04T11:54:26,209 writing requirements to /tmp/pip-modern-metadata-ys5xa37m/pyhmmer.egg-info/requires.txt 2023-08-04T11:54:26,210 writing top-level names to /tmp/pip-modern-metadata-ys5xa37m/pyhmmer.egg-info/top_level.txt 2023-08-04T11:54:26,212 writing manifest file '/tmp/pip-modern-metadata-ys5xa37m/pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:54:26,249 reading manifest file '/tmp/pip-modern-metadata-ys5xa37m/pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:54:26,251 reading manifest template 'MANIFEST.in' 2023-08-04T11:54:26,833 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-08-04T11:54:26,835 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-08-04T11:54:26,837 no previously-included directories found matching 'vendor/easel/demotic' 2023-08-04T11:54:26,838 no previously-included directories found matching 'vendor/easel/documentation' 2023-08-04T11:54:26,839 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-08-04T11:54:26,841 no previously-included directories found matching 'vendor/easel/miniapps' 2023-08-04T11:54:26,842 no previously-included directories found matching 'vendor/easel/testsuite' 2023-08-04T11:54:26,844 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-08-04T11:54:26,845 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-08-04T11:54:26,846 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-08-04T11:54:26,848 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-08-04T11:54:26,849 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-08-04T11:54:26,850 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-08-04T11:54:26,852 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-08-04T11:54:26,852 adding license file 'COPYING' 2023-08-04T11:54:26,880 writing manifest file '/tmp/pip-modern-metadata-ys5xa37m/pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:54:26,882 creating '/tmp/pip-modern-metadata-ys5xa37m/pyhmmer-0.9.0.dist-info' 2023-08-04T11:54:27,085 Preparing metadata (pyproject.toml): finished with status 'done' 2023-08-04T11:54:27,092 Source in /tmp/pip-wheel-29a4wu3w/pyhmmer_807a122d055c4f5c8823533d5021e745 has version 0.9.0, which satisfies requirement pyhmmer==0.9.0 from https://files.pythonhosted.org/packages/b9/eb/dcae2181c127c3cd8334a88b56729814e1aad5eb0f76c620fe87dc6b3043/pyhmmer-0.9.0.tar.gz 2023-08-04T11:54:27,093 Removed pyhmmer==0.9.0 from https://files.pythonhosted.org/packages/b9/eb/dcae2181c127c3cd8334a88b56729814e1aad5eb0f76c620fe87dc6b3043/pyhmmer-0.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-9ubne2fu' 2023-08-04T11:54:27,099 Created temporary directory: /tmp/pip-unpack-wnlq9ujz 2023-08-04T11:54:27,100 Building wheels for collected packages: pyhmmer 2023-08-04T11:54:27,104 Created temporary directory: /tmp/pip-wheel-x__jwt40 2023-08-04T11:54:27,104 Destination directory: /tmp/pip-wheel-x__jwt40 2023-08-04T11:54:27,106 Building wheel for pyhmmer (pyproject.toml): started 2023-08-04T11:54:27,107 Running command Building wheel for pyhmmer (pyproject.toml) 2023-08-04T11:54:27,783 pyHMMER is not supported on CPU architecture: 'armv7l' 2023-08-04T11:54:27,965 running bdist_wheel 2023-08-04T11:54:27,979 running build 2023-08-04T11:54:27,980 running build_py 2023-08-04T11:54:27,988 creating build 2023-08-04T11:54:27,988 creating build/lib.linux-armv7l-cpython-39 2023-08-04T11:54:27,989 creating build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:27,990 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:27,992 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:27,995 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:27,997 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2023-08-04T11:54:27,998 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2023-08-04T11:54:28,000 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2023-08-04T11:54:28,002 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2023-08-04T11:54:28,004 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2023-08-04T11:54:28,006 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2023-08-04T11:54:28,009 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,010 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,012 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,014 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,016 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,018 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,020 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,022 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,024 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,026 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,029 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,030 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,032 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,034 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2023-08-04T11:54:28,037 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,038 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,041 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,043 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,045 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,047 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,049 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,050 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,052 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,054 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,056 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,058 copying pyhmmer/tests/test_easel/test_gencode.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,060 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,062 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,064 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2023-08-04T11:54:28,066 running egg_info 2023-08-04T11:54:28,082 writing pyhmmer.egg-info/PKG-INFO 2023-08-04T11:54:28,085 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2023-08-04T11:54:28,087 writing requirements to pyhmmer.egg-info/requires.txt 2023-08-04T11:54:28,088 writing top-level names to pyhmmer.egg-info/top_level.txt 2023-08-04T11:54:28,104 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:54:28,122 reading manifest template 'MANIFEST.in' 2023-08-04T11:54:28,682 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-08-04T11:54:28,685 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-08-04T11:54:28,687 no previously-included directories found matching 'vendor/easel/demotic' 2023-08-04T11:54:28,689 no previously-included directories found matching 'vendor/easel/documentation' 2023-08-04T11:54:28,691 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-08-04T11:54:28,693 no previously-included directories found matching 'vendor/easel/miniapps' 2023-08-04T11:54:28,695 no previously-included directories found matching 'vendor/easel/testsuite' 2023-08-04T11:54:28,697 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-08-04T11:54:28,699 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-08-04T11:54:28,701 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-08-04T11:54:28,702 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-08-04T11:54:28,704 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-08-04T11:54:28,706 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-08-04T11:54:28,708 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-08-04T11:54:28,708 adding license file 'COPYING' 2023-08-04T11:54:28,745 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-08-04T11:54:28,752 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.fileobj' is absent from the `packages` configuration. 2023-08-04T11:54:28,752 !! 2023-08-04T11:54:28,752 ******************************************************************************** 2023-08-04T11:54:28,753 ############################ 2023-08-04T11:54:28,753 # Package would be ignored # 2023-08-04T11:54:28,753 ############################ 2023-08-04T11:54:28,753 Python recognizes 'pyhmmer.fileobj' as an importable package[^1], 2023-08-04T11:54:28,753 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,753 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,753 package, please make sure that 'pyhmmer.fileobj' is explicitly added 2023-08-04T11:54:28,754 to the `packages` configuration field. 2023-08-04T11:54:28,754 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,754 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,754 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,754 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,755 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,755 If you don't want 'pyhmmer.fileobj' to be distributed and are 2023-08-04T11:54:28,755 already explicitly excluding 'pyhmmer.fileobj' via 2023-08-04T11:54:28,755 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,755 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,755 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,756 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,756 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,756 even if it does not contain any `.py` files. 2023-08-04T11:54:28,756 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,756 directory, all directories are treated like packages. 2023-08-04T11:54:28,756 ******************************************************************************** 2023-08-04T11:54:28,757 !! 2023-08-04T11:54:28,757 check.warn(importable) 2023-08-04T11:54:28,757 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.reexports' is absent from the `packages` configuration. 2023-08-04T11:54:28,757 !! 2023-08-04T11:54:28,757 ******************************************************************************** 2023-08-04T11:54:28,758 ############################ 2023-08-04T11:54:28,758 # Package would be ignored # 2023-08-04T11:54:28,758 ############################ 2023-08-04T11:54:28,758 Python recognizes 'pyhmmer.reexports' as an importable package[^1], 2023-08-04T11:54:28,758 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,758 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,758 package, please make sure that 'pyhmmer.reexports' is explicitly added 2023-08-04T11:54:28,758 to the `packages` configuration field. 2023-08-04T11:54:28,759 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,759 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,759 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,759 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,759 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,760 If you don't want 'pyhmmer.reexports' to be distributed and are 2023-08-04T11:54:28,760 already explicitly excluding 'pyhmmer.reexports' via 2023-08-04T11:54:28,760 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,760 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,760 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,760 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,761 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,761 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,761 even if it does not contain any `.py` files. 2023-08-04T11:54:28,761 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,761 directory, all directories are treated like packages. 2023-08-04T11:54:28,761 ******************************************************************************** 2023-08-04T11:54:28,762 !! 2023-08-04T11:54:28,762 check.warn(importable) 2023-08-04T11:54:28,762 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data' is absent from the `packages` configuration. 2023-08-04T11:54:28,762 !! 2023-08-04T11:54:28,762 ******************************************************************************** 2023-08-04T11:54:28,762 ############################ 2023-08-04T11:54:28,763 # Package would be ignored # 2023-08-04T11:54:28,763 ############################ 2023-08-04T11:54:28,763 Python recognizes 'pyhmmer.tests.data' as an importable package[^1], 2023-08-04T11:54:28,763 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,763 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,763 package, please make sure that 'pyhmmer.tests.data' is explicitly added 2023-08-04T11:54:28,763 to the `packages` configuration field. 2023-08-04T11:54:28,764 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,764 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,764 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,764 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,764 If you don't want 'pyhmmer.tests.data' to be distributed and are 2023-08-04T11:54:28,765 already explicitly excluding 'pyhmmer.tests.data' via 2023-08-04T11:54:28,765 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,765 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,765 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,765 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,766 even if it does not contain any `.py` files. 2023-08-04T11:54:28,766 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,766 directory, all directories are treated like packages. 2023-08-04T11:54:28,766 ******************************************************************************** 2023-08-04T11:54:28,766 !! 2023-08-04T11:54:28,766 check.warn(importable) 2023-08-04T11:54:28,766 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms' is absent from the `packages` configuration. 2023-08-04T11:54:28,767 !! 2023-08-04T11:54:28,767 ******************************************************************************** 2023-08-04T11:54:28,767 ############################ 2023-08-04T11:54:28,767 # Package would be ignored # 2023-08-04T11:54:28,767 ############################ 2023-08-04T11:54:28,767 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package[^1], 2023-08-04T11:54:28,767 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,768 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,768 package, please make sure that 'pyhmmer.tests.data.hmms' is explicitly added 2023-08-04T11:54:28,768 to the `packages` configuration field. 2023-08-04T11:54:28,768 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,768 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,768 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,769 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,769 If you don't want 'pyhmmer.tests.data.hmms' to be distributed and are 2023-08-04T11:54:28,769 already explicitly excluding 'pyhmmer.tests.data.hmms' via 2023-08-04T11:54:28,769 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,769 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,769 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,770 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,770 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,770 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,770 even if it does not contain any `.py` files. 2023-08-04T11:54:28,770 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,770 directory, all directories are treated like packages. 2023-08-04T11:54:28,770 ******************************************************************************** 2023-08-04T11:54:28,771 !! 2023-08-04T11:54:28,771 check.warn(importable) 2023-08-04T11:54:28,771 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.bin' is absent from the `packages` configuration. 2023-08-04T11:54:28,771 !! 2023-08-04T11:54:28,771 ******************************************************************************** 2023-08-04T11:54:28,771 ############################ 2023-08-04T11:54:28,772 # Package would be ignored # 2023-08-04T11:54:28,772 ############################ 2023-08-04T11:54:28,772 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package[^1], 2023-08-04T11:54:28,772 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,772 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,772 package, please make sure that 'pyhmmer.tests.data.hmms.bin' is explicitly added 2023-08-04T11:54:28,772 to the `packages` configuration field. 2023-08-04T11:54:28,773 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,773 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,773 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,773 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,773 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,773 If you don't want 'pyhmmer.tests.data.hmms.bin' to be distributed and are 2023-08-04T11:54:28,774 already explicitly excluding 'pyhmmer.tests.data.hmms.bin' via 2023-08-04T11:54:28,774 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,774 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,774 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,774 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,774 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,775 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,775 even if it does not contain any `.py` files. 2023-08-04T11:54:28,775 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,775 directory, all directories are treated like packages. 2023-08-04T11:54:28,775 ******************************************************************************** 2023-08-04T11:54:28,775 !! 2023-08-04T11:54:28,775 check.warn(importable) 2023-08-04T11:54:28,776 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.db' is absent from the `packages` configuration. 2023-08-04T11:54:28,776 !! 2023-08-04T11:54:28,776 ******************************************************************************** 2023-08-04T11:54:28,776 ############################ 2023-08-04T11:54:28,776 # Package would be ignored # 2023-08-04T11:54:28,776 ############################ 2023-08-04T11:54:28,776 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package[^1], 2023-08-04T11:54:28,776 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,777 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,777 package, please make sure that 'pyhmmer.tests.data.hmms.db' is explicitly added 2023-08-04T11:54:28,777 to the `packages` configuration field. 2023-08-04T11:54:28,777 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,777 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,777 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,778 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,778 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,778 If you don't want 'pyhmmer.tests.data.hmms.db' to be distributed and are 2023-08-04T11:54:28,778 already explicitly excluding 'pyhmmer.tests.data.hmms.db' via 2023-08-04T11:54:28,778 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,778 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,778 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,779 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,779 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,779 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,779 even if it does not contain any `.py` files. 2023-08-04T11:54:28,779 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,779 directory, all directories are treated like packages. 2023-08-04T11:54:28,780 ******************************************************************************** 2023-08-04T11:54:28,780 !! 2023-08-04T11:54:28,780 check.warn(importable) 2023-08-04T11:54:28,780 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.txt' is absent from the `packages` configuration. 2023-08-04T11:54:28,780 !! 2023-08-04T11:54:28,780 ******************************************************************************** 2023-08-04T11:54:28,780 ############################ 2023-08-04T11:54:28,781 # Package would be ignored # 2023-08-04T11:54:28,781 ############################ 2023-08-04T11:54:28,781 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package[^1], 2023-08-04T11:54:28,781 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,781 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,781 package, please make sure that 'pyhmmer.tests.data.hmms.txt' is explicitly added 2023-08-04T11:54:28,781 to the `packages` configuration field. 2023-08-04T11:54:28,782 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,782 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,782 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,782 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,782 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,783 If you don't want 'pyhmmer.tests.data.hmms.txt' to be distributed and are 2023-08-04T11:54:28,783 already explicitly excluding 'pyhmmer.tests.data.hmms.txt' via 2023-08-04T11:54:28,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,783 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,783 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,783 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,784 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,784 even if it does not contain any `.py` files. 2023-08-04T11:54:28,784 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,784 directory, all directories are treated like packages. 2023-08-04T11:54:28,784 ******************************************************************************** 2023-08-04T11:54:28,784 !! 2023-08-04T11:54:28,785 check.warn(importable) 2023-08-04T11:54:28,785 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.txt2' is absent from the `packages` configuration. 2023-08-04T11:54:28,785 !! 2023-08-04T11:54:28,785 ******************************************************************************** 2023-08-04T11:54:28,785 ############################ 2023-08-04T11:54:28,785 # Package would be ignored # 2023-08-04T11:54:28,785 ############################ 2023-08-04T11:54:28,785 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package[^1], 2023-08-04T11:54:28,786 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,786 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,786 package, please make sure that 'pyhmmer.tests.data.hmms.txt2' is explicitly added 2023-08-04T11:54:28,786 to the `packages` configuration field. 2023-08-04T11:54:28,786 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,786 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,786 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,787 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,787 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,787 If you don't want 'pyhmmer.tests.data.hmms.txt2' to be distributed and are 2023-08-04T11:54:28,787 already explicitly excluding 'pyhmmer.tests.data.hmms.txt2' via 2023-08-04T11:54:28,787 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,787 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,787 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,788 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,788 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,788 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,788 even if it does not contain any `.py` files. 2023-08-04T11:54:28,788 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,789 directory, all directories are treated like packages. 2023-08-04T11:54:28,789 ******************************************************************************** 2023-08-04T11:54:28,789 !! 2023-08-04T11:54:28,789 check.warn(importable) 2023-08-04T11:54:28,789 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.jackhmmer' is absent from the `packages` configuration. 2023-08-04T11:54:28,789 !! 2023-08-04T11:54:28,790 ******************************************************************************** 2023-08-04T11:54:28,790 ############################ 2023-08-04T11:54:28,790 # Package would be ignored # 2023-08-04T11:54:28,790 ############################ 2023-08-04T11:54:28,790 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package[^1], 2023-08-04T11:54:28,790 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,790 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,791 package, please make sure that 'pyhmmer.tests.data.jackhmmer' is explicitly added 2023-08-04T11:54:28,791 to the `packages` configuration field. 2023-08-04T11:54:28,791 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,791 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,792 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,792 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,792 If you don't want 'pyhmmer.tests.data.jackhmmer' to be distributed and are 2023-08-04T11:54:28,792 already explicitly excluding 'pyhmmer.tests.data.jackhmmer' via 2023-08-04T11:54:28,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,793 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,793 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,793 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,794 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,794 even if it does not contain any `.py` files. 2023-08-04T11:54:28,794 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,794 directory, all directories are treated like packages. 2023-08-04T11:54:28,794 ******************************************************************************** 2023-08-04T11:54:28,794 !! 2023-08-04T11:54:28,794 check.warn(importable) 2023-08-04T11:54:28,795 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.msa' is absent from the `packages` configuration. 2023-08-04T11:54:28,795 !! 2023-08-04T11:54:28,795 ******************************************************************************** 2023-08-04T11:54:28,795 ############################ 2023-08-04T11:54:28,795 # Package would be ignored # 2023-08-04T11:54:28,795 ############################ 2023-08-04T11:54:28,796 Python recognizes 'pyhmmer.tests.data.msa' as an importable package[^1], 2023-08-04T11:54:28,796 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,796 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,796 package, please make sure that 'pyhmmer.tests.data.msa' is explicitly added 2023-08-04T11:54:28,796 to the `packages` configuration field. 2023-08-04T11:54:28,796 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,797 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,797 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,797 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,797 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,797 If you don't want 'pyhmmer.tests.data.msa' to be distributed and are 2023-08-04T11:54:28,798 already explicitly excluding 'pyhmmer.tests.data.msa' via 2023-08-04T11:54:28,798 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,798 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,798 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,798 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,798 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,799 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,799 even if it does not contain any `.py` files. 2023-08-04T11:54:28,799 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,799 directory, all directories are treated like packages. 2023-08-04T11:54:28,799 ******************************************************************************** 2023-08-04T11:54:28,800 !! 2023-08-04T11:54:28,800 check.warn(importable) 2023-08-04T11:54:28,800 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.seqs' is absent from the `packages` configuration. 2023-08-04T11:54:28,800 !! 2023-08-04T11:54:28,800 ******************************************************************************** 2023-08-04T11:54:28,800 ############################ 2023-08-04T11:54:28,800 # Package would be ignored # 2023-08-04T11:54:28,801 ############################ 2023-08-04T11:54:28,801 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package[^1], 2023-08-04T11:54:28,801 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,801 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,801 package, please make sure that 'pyhmmer.tests.data.seqs' is explicitly added 2023-08-04T11:54:28,801 to the `packages` configuration field. 2023-08-04T11:54:28,802 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,802 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,802 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,802 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,803 If you don't want 'pyhmmer.tests.data.seqs' to be distributed and are 2023-08-04T11:54:28,803 already explicitly excluding 'pyhmmer.tests.data.seqs' via 2023-08-04T11:54:28,803 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,803 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,803 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,803 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,804 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,804 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,804 even if it does not contain any `.py` files. 2023-08-04T11:54:28,804 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,804 directory, all directories are treated like packages. 2023-08-04T11:54:28,804 ******************************************************************************** 2023-08-04T11:54:28,805 !! 2023-08-04T11:54:28,805 check.warn(importable) 2023-08-04T11:54:28,805 /tmp/pip-build-env-byjnm70t/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.tables' is absent from the `packages` configuration. 2023-08-04T11:54:28,805 !! 2023-08-04T11:54:28,805 ******************************************************************************** 2023-08-04T11:54:28,806 ############################ 2023-08-04T11:54:28,806 # Package would be ignored # 2023-08-04T11:54:28,806 ############################ 2023-08-04T11:54:28,806 Python recognizes 'pyhmmer.tests.data.tables' as an importable package[^1], 2023-08-04T11:54:28,806 but it is absent from setuptools' `packages` configuration. 2023-08-04T11:54:28,806 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-04T11:54:28,807 package, please make sure that 'pyhmmer.tests.data.tables' is explicitly added 2023-08-04T11:54:28,807 to the `packages` configuration field. 2023-08-04T11:54:28,807 Alternatively, you can also rely on setuptools' discovery methods 2023-08-04T11:54:28,807 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-04T11:54:28,807 instead of `find_packages(...)`/`find:`). 2023-08-04T11:54:28,807 You can read more about "package discovery" on setuptools documentation page: 2023-08-04T11:54:28,808 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-04T11:54:28,808 If you don't want 'pyhmmer.tests.data.tables' to be distributed and are 2023-08-04T11:54:28,808 already explicitly excluding 'pyhmmer.tests.data.tables' via 2023-08-04T11:54:28,808 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-04T11:54:28,808 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-04T11:54:28,809 combination with a more fine grained `package-data` configuration. 2023-08-04T11:54:28,809 You can read more about "package data files" on setuptools documentation page: 2023-08-04T11:54:28,809 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-04T11:54:28,809 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-04T11:54:28,809 even if it does not contain any `.py` files. 2023-08-04T11:54:28,810 On the other hand, currently there is no concept of package data 2023-08-04T11:54:28,810 directory, all directories are treated like packages. 2023-08-04T11:54:28,810 ******************************************************************************** 2023-08-04T11:54:28,810 !! 2023-08-04T11:54:28,810 check.warn(importable) 2023-08-04T11:54:28,810 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,811 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,811 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,811 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,811 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,811 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,811 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,812 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,815 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,817 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,819 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,822 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,830 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-39/pyhmmer 2023-08-04T11:54:28,832 creating build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2023-08-04T11:54:28,833 copying pyhmmer/fileobj/__init__.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2023-08-04T11:54:28,835 copying pyhmmer/fileobj/bsd.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2023-08-04T11:54:28,837 copying pyhmmer/fileobj/bsd.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2023-08-04T11:54:28,839 copying pyhmmer/fileobj/linux.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2023-08-04T11:54:28,842 copying pyhmmer/fileobj/linux.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2023-08-04T11:54:28,844 copying pyhmmer/fileobj/util.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2023-08-04T11:54:28,846 creating build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2023-08-04T11:54:28,847 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2023-08-04T11:54:28,848 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2023-08-04T11:54:28,851 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2023-08-04T11:54:28,853 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2023-08-04T11:54:28,855 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2023-08-04T11:54:28,857 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2023-08-04T11:54:28,859 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2023-08-04T11:54:28,861 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2023-08-04T11:54:28,863 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2023-08-04T11:54:28,864 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2023-08-04T11:54:28,866 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2023-08-04T11:54:28,867 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2023-08-04T11:54:28,869 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2023-08-04T11:54:28,870 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2023-08-04T11:54:28,874 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2023-08-04T11:54:28,877 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2023-08-04T11:54:28,881 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2023-08-04T11:54:28,924 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,925 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,929 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,932 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,934 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,937 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,940 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,944 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,948 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,950 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,953 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,957 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,961 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,964 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,966 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,969 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:28,972 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:29,056 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:29,076 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:29,078 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:29,116 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2023-08-04T11:54:29,169 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2023-08-04T11:54:29,170 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2023-08-04T11:54:29,176 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2023-08-04T11:54:29,179 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2023-08-04T11:54:29,184 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2023-08-04T11:54:29,187 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2023-08-04T11:54:29,194 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2023-08-04T11:54:29,202 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2023-08-04T11:54:29,303 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:54:29,304 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:54:29,309 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:54:29,313 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:54:29,317 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2023-08-04T11:54:29,403 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,404 copying pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,406 copying pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,409 copying pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,411 copying pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,414 copying pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,417 copying pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,420 copying pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,423 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,425 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,427 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2023-08-04T11:54:29,430 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2023-08-04T11:54:29,430 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2023-08-04T11:54:29,433 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2023-08-04T11:54:29,436 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2023-08-04T11:54:29,439 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2023-08-04T11:54:29,441 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2023-08-04T11:54:29,442 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2023-08-04T11:54:29,461 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2023-08-04T11:54:29,467 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2023-08-04T11:54:29,537 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2023-08-04T11:54:29,541 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2023-08-04T11:54:29,543 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2023-08-04T11:54:29,546 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2023-08-04T11:54:29,548 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,549 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,552 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,554 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,557 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,559 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,561 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,563 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,566 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,569 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2023-08-04T11:54:29,575 running build_clib 2023-08-04T11:54:29,583 creating build/temp.linux-armv7l-cpython-39 2023-08-04T11:54:29,584 generating "divsufsort.h" for divsufsort library 2023-08-04T11:54:29,585 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-39/divsufsort.h 2023-08-04T11:54:29,587 generating "esl_config.h" for easel library 2023-08-04T11:54:29,588 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stdio_h.c -o build/temp.linux-armv7l-cpython-39/have_stdio_h.o 2023-08-04T11:54:29,673 checking whether can be included... yes 2023-08-04T11:54:29,676 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-39/have_stdlib_h.o 2023-08-04T11:54:29,768 checking whether can be included... yes 2023-08-04T11:54:29,771 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_string_h.c -o build/temp.linux-armv7l-cpython-39/have_string_h.o 2023-08-04T11:54:29,843 checking whether can be included... yes 2023-08-04T11:54:29,846 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-39/have_inttypes_h.o 2023-08-04T11:54:29,956 checking whether can be included... yes 2023-08-04T11:54:29,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stdint_h.c -o build/temp.linux-armv7l-cpython-39/have_stdint_h.o 2023-08-04T11:54:30,030 checking whether can be included... yes 2023-08-04T11:54:30,033 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strings_h.c -o build/temp.linux-armv7l-cpython-39/have_strings_h.o 2023-08-04T11:54:30,101 checking whether can be included... yes 2023-08-04T11:54:30,104 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_stat_h.o 2023-08-04T11:54:30,177 checking whether can be included... yes 2023-08-04T11:54:30,180 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_types_h.o 2023-08-04T11:54:30,259 checking whether can be included... yes 2023-08-04T11:54:30,261 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_unistd_h.c -o build/temp.linux-armv7l-cpython-39/have_unistd_h.o 2023-08-04T11:54:30,340 checking whether can be included... yes 2023-08-04T11:54:30,343 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_endian_h.c -o build/temp.linux-armv7l-cpython-39/have_endian_h.o 2023-08-04T11:54:30,415 checking whether can be included... yes 2023-08-04T11:54:30,417 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-39/have_netinet_in_h.o 2023-08-04T11:54:30,514 checking whether can be included... yes 2023-08-04T11:54:30,517 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_param_h.o 2023-08-04T11:54:30,616 checking whether can be included... yes 2023-08-04T11:54:30,619 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.o 2023-08-04T11:54:30,660 In file included from build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.c:1: 2023-08-04T11:54:30,661 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 2023-08-04T11:54:30,661 21 | #warning "The header is deprecated and will be removed." 2023-08-04T11:54:30,661 | ^~~~~~~ 2023-08-04T11:54:30,692 checking whether can be included... yes 2023-08-04T11:54:30,694 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-39/have_aligned_alloc.o -Wno-all 2023-08-04T11:54:30,793 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-39/have_aligned_alloc.bin 2023-08-04T11:54:30,895 checking whether function 'aligned_alloc' is available... yes 2023-08-04T11:54:30,898 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_erfc.c -o build/temp.linux-armv7l-cpython-39/have_erfc.o -Wno-all 2023-08-04T11:54:31,003 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_erfc.o -o build/temp.linux-armv7l-cpython-39/have_erfc.bin 2023-08-04T11:54:31,101 checking whether function 'erfc' is available... yes 2023-08-04T11:54:31,104 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_getpid.c -o build/temp.linux-armv7l-cpython-39/have_getpid.o -Wno-all 2023-08-04T11:54:31,194 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_getpid.o -o build/temp.linux-armv7l-cpython-39/have_getpid.bin 2023-08-04T11:54:31,293 checking whether function 'getpid' is available... yes 2023-08-04T11:54:31,295 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-39/have__mm_malloc.o -Wno-all 2023-08-04T11:54:31,396 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-39/have__mm_malloc.bin 2023-08-04T11:54:31,507 /usr/bin/ld: build/temp.linux-armv7l-cpython-39/have__mm_malloc.o: in function `main': 2023-08-04T11:54:31,508 /tmp/pip-wheel-29a4wu3w/pyhmmer_807a122d055c4f5c8823533d5021e745/build/temp.linux-armv7l-cpython-39/have__mm_malloc.c:2: undefined reference to `_mm_malloc' 2023-08-04T11:54:31,513 collect2: error: ld returned 1 exit status 2023-08-04T11:54:31,514 checking whether function '_mm_malloc' is available... no 2023-08-04T11:54:31,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_popen.c -o build/temp.linux-armv7l-cpython-39/have_popen.o -Wno-all 2023-08-04T11:54:31,607 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_popen.o -o build/temp.linux-armv7l-cpython-39/have_popen.bin 2023-08-04T11:54:31,703 checking whether function 'popen' is available... yes 2023-08-04T11:54:31,705 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-39/have_posix_memalign.o -Wno-all 2023-08-04T11:54:31,807 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-39/have_posix_memalign.bin 2023-08-04T11:54:31,907 checking whether function 'posix_memalign' is available... yes 2023-08-04T11:54:31,910 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-39/have_strcasecmp.o -Wno-all 2023-08-04T11:54:31,991 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-39/have_strcasecmp.bin 2023-08-04T11:54:32,090 checking whether function 'strcasecmp' is available... yes 2023-08-04T11:54:32,093 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strsep.c -o build/temp.linux-armv7l-cpython-39/have_strsep.o -Wno-all 2023-08-04T11:54:32,177 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_strsep.o -o build/temp.linux-armv7l-cpython-39/have_strsep.bin 2023-08-04T11:54:32,301 checking whether function 'strsep' is available... yes 2023-08-04T11:54:32,303 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sysconf.c -o build/temp.linux-armv7l-cpython-39/have_sysconf.o -Wno-all 2023-08-04T11:54:32,392 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_sysconf.o -o build/temp.linux-armv7l-cpython-39/have_sysconf.bin 2023-08-04T11:54:32,492 checking whether function 'sysconf' is available... yes 2023-08-04T11:54:32,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sysctl.c -o build/temp.linux-armv7l-cpython-39/have_sysctl.o -Wno-all 2023-08-04T11:54:32,552 In file included from build/temp.linux-armv7l-cpython-39/have_sysctl.c:2: 2023-08-04T11:54:32,553 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 2023-08-04T11:54:32,553 21 | #warning "The header is deprecated and will be removed." 2023-08-04T11:54:32,553 | ^~~~~~~ 2023-08-04T11:54:32,560 build/temp.linux-armv7l-cpython-39/have_sysctl.c: In function ‘main’: 2023-08-04T11:54:32,561 build/temp.linux-armv7l-cpython-39/have_sysctl.c:4:1: warning: ‘sysctl’ is deprecated [-Wdeprecated-declarations] 2023-08-04T11:54:32,561 4 | int main() { sysctl(NULL, 0, NULL, NULL, NULL, 0); return 0; } 2023-08-04T11:54:32,561 | ^~~ 2023-08-04T11:54:32,561 In file included from build/temp.linux-armv7l-cpython-39/have_sysctl.c:2: 2023-08-04T11:54:32,562 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:70:12: note: declared here 2023-08-04T11:54:32,562 70 | extern int sysctl (int *__name, int __nlen, void *__oldval, 2023-08-04T11:54:32,563 | ^~~~~~ 2023-08-04T11:54:32,598 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_sysctl.o -o build/temp.linux-armv7l-cpython-39/have_sysctl.bin 2023-08-04T11:54:32,698 checking whether function 'sysctl' is available... yes 2023-08-04T11:54:32,701 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_times.c -o build/temp.linux-armv7l-cpython-39/have_times.o -Wno-all 2023-08-04T11:54:32,784 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_times.o -o build/temp.linux-armv7l-cpython-39/have_times.bin 2023-08-04T11:54:32,884 checking whether function 'times' is available... yes 2023-08-04T11:54:32,887 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_fseeko.c -o build/temp.linux-armv7l-cpython-39/have_fseeko.o -Wno-all 2023-08-04T11:54:32,982 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_fseeko.o -o build/temp.linux-armv7l-cpython-39/have_fseeko.bin 2023-08-04T11:54:33,107 checking whether function 'fseeko' is available... yes 2023-08-04T11:54:33,110 generating "p7_config.h" for hmmer library 2023-08-04T11:54:33,112 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_endian_h.c -o build/temp.linux-armv7l-cpython-39/have_endian_h.o 2023-08-04T11:54:33,181 checking whether can be included... yes 2023-08-04T11:54:33,183 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-39/have_inttypes_h.o 2023-08-04T11:54:33,256 checking whether can be included... yes 2023-08-04T11:54:33,258 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stdint_h.c -o build/temp.linux-armv7l-cpython-39/have_stdint_h.o 2023-08-04T11:54:33,328 checking whether can be included... yes 2023-08-04T11:54:33,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_unistd_h.c -o build/temp.linux-armv7l-cpython-39/have_unistd_h.o 2023-08-04T11:54:33,407 checking whether can be included... yes 2023-08-04T11:54:33,410 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_types_h.o 2023-08-04T11:54:33,488 checking whether can be included... yes 2023-08-04T11:54:33,491 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-39/have_netinet_in_h.o 2023-08-04T11:54:33,582 checking whether can be included... yes 2023-08-04T11:54:33,584 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_param_h.o 2023-08-04T11:54:33,681 checking whether can be included... yes 2023-08-04T11:54:33,684 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.o 2023-08-04T11:54:33,726 In file included from build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.c:1: 2023-08-04T11:54:33,726 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 2023-08-04T11:54:33,726 21 | #warning "The header is deprecated and will be removed." 2023-08-04T11:54:33,726 | ^~~~~~~ 2023-08-04T11:54:33,757 checking whether can be included... yes 2023-08-04T11:54:33,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_mkstemp.c -o build/temp.linux-armv7l-cpython-39/have_mkstemp.o -Wno-all 2023-08-04T11:54:33,898 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_mkstemp.o -o build/temp.linux-armv7l-cpython-39/have_mkstemp.bin 2023-08-04T11:54:33,997 checking whether function 'mkstemp' is available... yes 2023-08-04T11:54:33,999 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_popen.c -o build/temp.linux-armv7l-cpython-39/have_popen.o -Wno-all 2023-08-04T11:54:34,090 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_popen.o -o build/temp.linux-armv7l-cpython-39/have_popen.bin 2023-08-04T11:54:34,188 checking whether function 'popen' is available... yes 2023-08-04T11:54:34,190 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_putenv.c -o build/temp.linux-armv7l-cpython-39/have_putenv.o -Wno-all 2023-08-04T11:54:34,290 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_putenv.o -o build/temp.linux-armv7l-cpython-39/have_putenv.bin 2023-08-04T11:54:34,385 checking whether function 'putenv' is available... yes 2023-08-04T11:54:34,388 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-39/have_strcasecmp.o -Wno-all 2023-08-04T11:54:34,466 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-39/have_strcasecmp.bin 2023-08-04T11:54:34,565 checking whether function 'strcasecmp' is available... yes 2023-08-04T11:54:34,567 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strsep.c -o build/temp.linux-armv7l-cpython-39/have_strsep.o -Wno-all 2023-08-04T11:54:34,677 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_strsep.o -o build/temp.linux-armv7l-cpython-39/have_strsep.bin 2023-08-04T11:54:34,784 checking whether function 'strsep' is available... yes 2023-08-04T11:54:34,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_times.c -o build/temp.linux-armv7l-cpython-39/have_times.o -Wno-all 2023-08-04T11:54:34,871 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_times.o -o build/temp.linux-armv7l-cpython-39/have_times.bin 2023-08-04T11:54:34,970 checking whether function 'times' is available... yes 2023-08-04T11:54:34,972 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_getpid.c -o build/temp.linux-armv7l-cpython-39/have_getpid.o -Wno-all 2023-08-04T11:54:35,063 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_getpid.o -o build/temp.linux-armv7l-cpython-39/have_getpid.bin 2023-08-04T11:54:35,161 checking whether function 'getpid' is available... yes 2023-08-04T11:54:35,164 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sysctl.c -o build/temp.linux-armv7l-cpython-39/have_sysctl.o -Wno-all 2023-08-04T11:54:35,222 In file included from build/temp.linux-armv7l-cpython-39/have_sysctl.c:2: 2023-08-04T11:54:35,222 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 2023-08-04T11:54:35,222 21 | #warning "The header is deprecated and will be removed." 2023-08-04T11:54:35,222 | ^~~~~~~ 2023-08-04T11:54:35,229 build/temp.linux-armv7l-cpython-39/have_sysctl.c: In function ‘main’: 2023-08-04T11:54:35,229 build/temp.linux-armv7l-cpython-39/have_sysctl.c:4:1: warning: ‘sysctl’ is deprecated [-Wdeprecated-declarations] 2023-08-04T11:54:35,229 4 | int main() { sysctl(NULL, 0, NULL, NULL, NULL, 0); return 0; } 2023-08-04T11:54:35,230 | ^~~ 2023-08-04T11:54:35,230 In file included from build/temp.linux-armv7l-cpython-39/have_sysctl.c:2: 2023-08-04T11:54:35,230 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:70:12: note: declared here 2023-08-04T11:54:35,230 70 | extern int sysctl (int *__name, int __nlen, void *__oldval, 2023-08-04T11:54:35,231 | ^~~~~~ 2023-08-04T11:54:35,265 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_sysctl.o -o build/temp.linux-armv7l-cpython-39/have_sysctl.bin 2023-08-04T11:54:35,364 checking whether function 'sysctl' is available... yes 2023-08-04T11:54:35,366 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sysconf.c -o build/temp.linux-armv7l-cpython-39/have_sysconf.o -Wno-all 2023-08-04T11:54:35,481 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_sysconf.o -o build/temp.linux-armv7l-cpython-39/have_sysconf.bin 2023-08-04T11:54:35,589 checking whether function 'sysconf' is available... yes 2023-08-04T11:54:35,591 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_getcwd.c -o build/temp.linux-armv7l-cpython-39/have_getcwd.o -Wno-all 2023-08-04T11:54:35,682 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_getcwd.o -o build/temp.linux-armv7l-cpython-39/have_getcwd.bin 2023-08-04T11:54:35,780 checking whether function 'getcwd' is available... yes 2023-08-04T11:54:35,783 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_chmod.c -o build/temp.linux-armv7l-cpython-39/have_chmod.o -Wno-all 2023-08-04T11:54:35,868 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_chmod.o -o build/temp.linux-armv7l-cpython-39/have_chmod.bin 2023-08-04T11:54:35,968 checking whether function 'chmod' is available... yes 2023-08-04T11:54:35,970 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stat.c -o build/temp.linux-armv7l-cpython-39/have_stat.o -Wno-all 2023-08-04T11:54:36,059 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_stat.o -o build/temp.linux-armv7l-cpython-39/have_stat.bin 2023-08-04T11:54:36,161 checking whether function 'stat' is available... yes 2023-08-04T11:54:36,163 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_fstat.c -o build/temp.linux-armv7l-cpython-39/have_fstat.o -Wno-all 2023-08-04T11:54:36,271 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_fstat.o -o build/temp.linux-armv7l-cpython-39/have_fstat.bin 2023-08-04T11:54:36,382 checking whether function 'fstat' is available... yes 2023-08-04T11:54:36,385 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_erfc.c -o build/temp.linux-armv7l-cpython-39/have_erfc.o -Wno-all 2023-08-04T11:54:36,491 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_erfc.o -o build/temp.linux-armv7l-cpython-39/have_erfc.bin 2023-08-04T11:54:36,590 checking whether function 'erfc' is available... yes 2023-08-04T11:54:36,592 generating build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2023-08-04T11:54:36,601 generating build/temp.linux-armv7l-cpython-39/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2023-08-04T11:54:36,609 generating build/temp.linux-armv7l-cpython-39/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2023-08-04T11:54:36,620 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2023-08-04T11:54:36,621 creating build/temp.linux-armv7l-cpython-39/vendor 2023-08-04T11:54:36,621 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer 2023-08-04T11:54:36,622 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort 2023-08-04T11:54:36,623 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2023-08-04T11:54:40,428 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libdivsufsort.a build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2023-08-04T11:54:40,449 generating build/temp.linux-armv7l-cpython-39/libeasel.a from vendor/easel/esl_rand64.c, vendor/easel/esl_hmm.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_tree.c, vendor/easel/esl_randomseq.c, vendor/easel/interface_gsl.c, vendor/easel/esl_swat.c, vendor/easel/esl_random.c, vendor/easel/esl_msa.c, vendor/easel/esl_wuss.c, vendor/easel/esl_heap.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_red_black.c, vendor/easel/esl_stack.c, vendor/easel/esl_avx.c, vendor/easel/interface_lapack.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_json.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_threads.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_stats.c, vendor/easel/esl_buffer.c, vendor/easel/esl_composition.c, vendor/easel/esl_ssi.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_regexp.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_gencode.c, vendor/easel/esl_arr3.c, vendor/easel/esl_vmx.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_neon.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_alloc.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_cpu.c, vendor/easel/esl_getopts.c, vendor/easel/esl_histogram.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_gev.c, vendor/easel/esl_mpi.c, vendor/easel/esl_mem.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_paml.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_distance.c, vendor/easel/esl_sqio.c, vendor/easel/esl_recorder.c, vendor/easel/esl_weibull.c, vendor/easel/easel.c, vendor/easel/esl_arr2.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_graph.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_sse.c, vendor/easel/esl_avx512.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_normal.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_cluster.c, vendor/easel/esl_varint.c, vendor/easel/esl_msafile.c, vendor/easel/esl_gamma.c, vendor/easel/esl_sq.c, vendor/easel/esl_exponential.c, vendor/easel/esl_huffman.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_bitfield.c, build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2023-08-04T11:54:40,453 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2023-08-04T11:54:40,454 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2023-08-04T11:54:40,454 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2023-08-04T11:54:40,455 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2023-08-04T11:54:40,455 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2023-08-04T11:54:40,456 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2023-08-04T11:54:40,456 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2023-08-04T11:54:40,457 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2023-08-04T11:54:40,458 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o 2023-08-04T11:54:40,458 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o 2023-08-04T11:54:40,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o 2023-08-04T11:54:40,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o 2023-08-04T11:54:40,544 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2023-08-04T11:54:40,545 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o 2023-08-04T11:54:40,715 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2023-08-04T11:54:40,716 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o 2023-08-04T11:54:40,922 In file included from vendor/easel/esl_msafile2.c:26: 2023-08-04T11:54:40,923 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2023-08-04T11:54:40,923 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:40,924 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:54:40,924 | ^ 2023-08-04T11:54:40,924 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:54:40,925 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-08-04T11:54:40,925 | ^~~~~~~ 2023-08-04T11:54:40,925 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:54:40,925 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:54:40,926 | ^~~ 2023-08-04T11:54:40,926 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:54:40,926 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-08-04T11:54:40,927 | ^~~~~~~ 2023-08-04T11:54:40,927 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:40,927 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:54:40,927 | ^ 2023-08-04T11:54:40,928 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:54:40,928 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-08-04T11:54:40,928 | ^~~~~~~ 2023-08-04T11:54:40,928 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:54:40,928 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:54:40,928 | ^~~ 2023-08-04T11:54:40,929 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:54:40,929 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-08-04T11:54:40,929 | ^~~~~~~ 2023-08-04T11:54:40,929 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2023-08-04T11:54:40,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o 2023-08-04T11:54:41,119 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2023-08-04T11:54:41,119 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-04T11:54:41,120 652 | for (i = 0; i < a; i++) 2023-08-04T11:54:41,120 | ^ 2023-08-04T11:54:41,127 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2023-08-04T11:54:41,129 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o 2023-08-04T11:54:41,307 In file included from vendor/easel/esl_hmm.c:9: 2023-08-04T11:54:41,307 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2023-08-04T11:54:41,307 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:41,308 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-04T11:54:41,308 | ^ 2023-08-04T11:54:41,308 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-08-04T11:54:41,309 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-08-04T11:54:41,309 | ^~~~~~~ 2023-08-04T11:54:41,309 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:54:41,309 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-04T11:54:41,310 | ^~~ 2023-08-04T11:54:41,310 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-08-04T11:54:41,310 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-08-04T11:54:41,311 | ^~~~~~~ 2023-08-04T11:54:41,788 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2023-08-04T11:54:41,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o 2023-08-04T11:54:41,922 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2023-08-04T11:54:41,923 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o 2023-08-04T11:54:42,241 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2023-08-04T11:54:42,242 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o 2023-08-04T11:54:42,756 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2023-08-04T11:54:42,757 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o 2023-08-04T11:54:43,500 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2023-08-04T11:54:43,501 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o 2023-08-04T11:54:43,660 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2023-08-04T11:54:43,661 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o 2023-08-04T11:54:43,983 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2023-08-04T11:54:43,983 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o 2023-08-04T11:54:44,141 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2023-08-04T11:54:44,142 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o 2023-08-04T11:54:44,559 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2023-08-04T11:54:44,559 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o 2023-08-04T11:54:44,642 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2023-08-04T11:54:44,646 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o 2023-08-04T11:54:44,689 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2023-08-04T11:54:44,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o 2023-08-04T11:54:44,812 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2023-08-04T11:54:44,813 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o 2023-08-04T11:54:44,896 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2023-08-04T11:54:44,897 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o 2023-08-04T11:54:45,019 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2023-08-04T11:54:45,022 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o 2023-08-04T11:54:45,843 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2023-08-04T11:54:45,843 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o 2023-08-04T11:54:46,013 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2023-08-04T11:54:46,013 15 | static double stopwatch_getRealTime(void); 2023-08-04T11:54:46,013 | ^~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:54:46,181 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2023-08-04T11:54:46,182 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o 2023-08-04T11:54:46,494 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2023-08-04T11:54:46,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o 2023-08-04T11:54:46,514 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2023-08-04T11:54:46,515 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o 2023-08-04T11:54:46,534 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2023-08-04T11:54:46,535 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o 2023-08-04T11:54:46,797 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2023-08-04T11:54:46,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o 2023-08-04T11:54:46,840 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2023-08-04T11:54:46,841 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:54:46,841 136 | return status; 2023-08-04T11:54:46,841 | ^~~~~~ 2023-08-04T11:54:46,965 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2023-08-04T11:54:46,965 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:46,965 261 | if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2023-08-04T11:54:46,966 | ^~ 2023-08-04T11:54:46,977 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2023-08-04T11:54:46,977 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:46,978 728 | if ((n+1) > ns->flen) ns->flen = n+1; 2023-08-04T11:54:46,978 | ^ 2023-08-04T11:54:46,982 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2023-08-04T11:54:46,983 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:46,983 862 | if (n > ns->plen) ns->plen = n; 2023-08-04T11:54:46,983 | ^ 2023-08-04T11:54:46,985 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:46,986 893 | for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2023-08-04T11:54:46,986 | ^ 2023-08-04T11:54:46,986 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2023-08-04T11:54:46,987 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:46,987 941 | if (n > ns->slen) ns->slen = n; 2023-08-04T11:54:46,988 | ^ 2023-08-04T11:54:46,989 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:46,990 957 | for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2023-08-04T11:54:46,990 | ^ 2023-08-04T11:54:46,997 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2023-08-04T11:54:46,997 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:46,998 1149 | for (i = 0; i < ns->nprimary; i++) 2023-08-04T11:54:46,998 | ^ 2023-08-04T11:54:47,000 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,000 1167 | for (i = 0; i < ns->nprimary; i++) 2023-08-04T11:54:47,000 | ^ 2023-08-04T11:54:47,002 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,002 1187 | for (i = 0; i < ns->nsecondary; i++) 2023-08-04T11:54:47,002 | ^ 2023-08-04T11:54:47,003 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,004 1204 | for (i = 0; i < ns->nsecondary; i++) 2023-08-04T11:54:47,004 | ^ 2023-08-04T11:54:47,007 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2023-08-04T11:54:47,008 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,008 1253 | for (i = 0; i < ns->nprimary; i++) 2023-08-04T11:54:47,009 | ^ 2023-08-04T11:54:47,010 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,010 1259 | for (i = 0; i < ns->nsecondary; i++) 2023-08-04T11:54:47,010 | ^ 2023-08-04T11:54:47,015 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2023-08-04T11:54:47,016 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,016 1351 | for (i = 0; i < ns->nprimary; i++) { 2023-08-04T11:54:47,017 | ^ 2023-08-04T11:54:47,018 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,018 1370 | for (i = 0; i < ns->nsecondary; i++) 2023-08-04T11:54:47,019 | ^ 2023-08-04T11:54:47,020 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,020 1376 | for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2023-08-04T11:54:47,020 | ^ 2023-08-04T11:54:47,021 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,021 1377 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2023-08-04T11:54:47,021 | ^ 2023-08-04T11:54:47,022 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:47,023 1378 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2023-08-04T11:54:47,023 | ^ 2023-08-04T11:54:47,521 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2023-08-04T11:54:47,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o 2023-08-04T11:54:47,622 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2023-08-04T11:54:47,623 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o 2023-08-04T11:54:47,778 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2023-08-04T11:54:47,779 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o 2023-08-04T11:54:47,879 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2023-08-04T11:54:47,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o 2023-08-04T11:54:48,039 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2023-08-04T11:54:48,040 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o 2023-08-04T11:54:48,415 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2023-08-04T11:54:48,416 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o 2023-08-04T11:54:48,637 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2023-08-04T11:54:48,637 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:48,638 253 | if (alphatype != dd->abc_r->type) 2023-08-04T11:54:48,638 | ^~ 2023-08-04T11:54:48,648 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2023-08-04T11:54:48,649 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:48,649 614 | if (sq->n > max_seqlen) max_seqlen = sq->n; 2023-08-04T11:54:48,649 | ^ 2023-08-04T11:54:48,650 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:48,650 615 | n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2023-08-04T11:54:48,650 | ^ 2023-08-04T11:54:48,651 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:48,651 616 | n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2023-08-04T11:54:48,651 | ^ 2023-08-04T11:54:48,652 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:48,652 617 | n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2023-08-04T11:54:48,652 | ^ 2023-08-04T11:54:48,654 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:48,655 676 | if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2023-08-04T11:54:48,655 | ^~ 2023-08-04T11:54:48,656 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:48,656 682 | if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2023-08-04T11:54:48,656 | ^~ 2023-08-04T11:54:48,657 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:48,657 687 | if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2023-08-04T11:54:48,658 | ^~ 2023-08-04T11:54:48,658 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:48,659 692 | if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2023-08-04T11:54:48,659 | ^~ 2023-08-04T11:54:48,694 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2023-08-04T11:54:48,695 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-08-04T11:54:48,695 1129 | } 2023-08-04T11:54:48,695 | ^ 2023-08-04T11:54:48,702 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2023-08-04T11:54:48,702 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-08-04T11:54:48,702 1052 | } 2023-08-04T11:54:48,703 | ^ 2023-08-04T11:54:48,863 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2023-08-04T11:54:48,863 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:54:48,863 722 | for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2023-08-04T11:54:48,863 | ^ 2023-08-04T11:54:48,864 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2023-08-04T11:54:48,864 645 | char *p; 2023-08-04T11:54:48,865 | ^ 2023-08-04T11:54:48,922 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2023-08-04T11:54:48,923 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o 2023-08-04T11:54:49,013 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2023-08-04T11:54:49,014 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o 2023-08-04T11:54:49,881 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2023-08-04T11:54:49,881 vendor/easel/esl_regexp.c:804:18: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:54:49,882 804 | *flagp |= flags&HASWIDTH; 2023-08-04T11:54:49,882 | ^ 2023-08-04T11:54:50,117 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2023-08-04T11:54:50,118 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o 2023-08-04T11:54:50,486 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2023-08-04T11:54:50,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o 2023-08-04T11:54:50,750 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2023-08-04T11:54:50,751 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o 2023-08-04T11:54:50,977 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2023-08-04T11:54:50,978 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o 2023-08-04T11:54:51,095 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2023-08-04T11:54:51,096 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o 2023-08-04T11:54:51,178 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2023-08-04T11:54:51,179 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:51,180 1308 | if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2023-08-04T11:54:51,180 | ^~ 2023-08-04T11:54:51,287 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2023-08-04T11:54:51,287 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:51,288 449 | if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2023-08-04T11:54:51,288 | ^~ 2023-08-04T11:54:52,033 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2023-08-04T11:54:52,033 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o 2023-08-04T11:54:52,049 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2023-08-04T11:54:52,050 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o 2023-08-04T11:54:52,239 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2023-08-04T11:54:52,240 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o 2023-08-04T11:54:52,494 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2023-08-04T11:54:52,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o 2023-08-04T11:54:52,796 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2023-08-04T11:54:52,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o 2023-08-04T11:54:52,833 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2023-08-04T11:54:52,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o 2023-08-04T11:54:52,933 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2023-08-04T11:54:52,934 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o 2023-08-04T11:54:52,977 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2023-08-04T11:54:52,977 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:54:52,978 541 | if (rank > h->n) 2023-08-04T11:54:52,978 | ^ 2023-08-04T11:54:53,531 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2023-08-04T11:54:53,532 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o 2023-08-04T11:54:53,595 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2023-08-04T11:54:53,595 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o 2023-08-04T11:54:53,866 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2023-08-04T11:54:53,867 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o 2023-08-04T11:54:54,083 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2023-08-04T11:54:54,084 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o 2023-08-04T11:54:54,261 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2023-08-04T11:54:54,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o 2023-08-04T11:54:54,327 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2023-08-04T11:54:54,328 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o 2023-08-04T11:54:54,379 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2023-08-04T11:54:54,380 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o 2023-08-04T11:54:54,418 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2023-08-04T11:54:54,420 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o 2023-08-04T11:54:54,606 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2023-08-04T11:54:54,606 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,607 216 | if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2023-08-04T11:54:54,607 | ^~ 2023-08-04T11:54:54,607 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,608 226 | if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-08-04T11:54:54,608 | ^~ 2023-08-04T11:54:54,608 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,609 233 | if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-08-04T11:54:54,609 | ^~ 2023-08-04T11:54:54,621 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2023-08-04T11:54:54,622 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,622 758 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:54:54,622 | ^~ 2023-08-04T11:54:54,623 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2023-08-04T11:54:54,623 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,624 809 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:54:54,624 | ^~ 2023-08-04T11:54:54,624 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2023-08-04T11:54:54,625 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,625 860 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:54:54,625 | ^~ 2023-08-04T11:54:54,628 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2023-08-04T11:54:54,628 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,628 1036 | if (status != eslOK || nres != W) { 2023-08-04T11:54:54,629 | ^~ 2023-08-04T11:54:54,630 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,630 1059 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:54:54,630 | ^~ 2023-08-04T11:54:54,640 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2023-08-04T11:54:54,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o 2023-08-04T11:54:54,645 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2023-08-04T11:54:54,645 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,646 1421 | if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2023-08-04T11:54:54,646 | ^ 2023-08-04T11:54:54,650 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,650 1458 | if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2023-08-04T11:54:54,651 | ^~ 2023-08-04T11:54:54,651 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2023-08-04T11:54:54,652 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,653 1513 | if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2023-08-04T11:54:54,653 | ^ 2023-08-04T11:54:54,654 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,654 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-04T11:54:54,654 | ^~ 2023-08-04T11:54:54,655 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,655 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-04T11:54:54,655 | ^ 2023-08-04T11:54:54,656 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,657 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-04T11:54:54,657 | ^ 2023-08-04T11:54:54,657 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,658 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2023-08-04T11:54:54,658 | ^ 2023-08-04T11:54:54,658 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,659 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2023-08-04T11:54:54,659 | ^ 2023-08-04T11:54:54,660 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,660 1526 | for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2023-08-04T11:54:54,660 | ^ 2023-08-04T11:54:54,664 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,665 1527 | if (inx < volume->end_seq) break; 2023-08-04T11:54:54,665 | ^ 2023-08-04T11:54:54,665 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,666 1532 | if (cnt >= ncbi->volumes) return eslFAIL; 2023-08-04T11:54:54,666 | ^~ 2023-08-04T11:54:54,666 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,666 1539 | if (ncbi->index_start == -1 || inx > end) { 2023-08-04T11:54:54,667 | ^~ 2023-08-04T11:54:54,667 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,667 1539 | if (ncbi->index_start == -1 || inx > end) { 2023-08-04T11:54:54,667 | ^ 2023-08-04T11:54:54,668 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,668 1564 | if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-04T11:54:54,668 | ^~ 2023-08-04T11:54:54,668 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,668 1572 | if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-04T11:54:54,669 | ^~ 2023-08-04T11:54:54,670 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,670 1581 | if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-04T11:54:54,671 | ^~ 2023-08-04T11:54:54,681 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2023-08-04T11:54:54,682 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,682 1623 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:54:54,682 | ^~ 2023-08-04T11:54:54,682 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,683 1633 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-04T11:54:54,683 | ^~ 2023-08-04T11:54:54,683 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,683 1641 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-04T11:54:54,683 | ^~ 2023-08-04T11:54:54,684 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2023-08-04T11:54:54,684 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,684 1690 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:54:54,684 | ^~ 2023-08-04T11:54:54,685 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,685 1701 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-04T11:54:54,685 | ^~ 2023-08-04T11:54:54,685 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,685 1754 | if (ncbi->seq_apos - sq->doff < size) { 2023-08-04T11:54:54,686 | ^ 2023-08-04T11:54:54,686 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2023-08-04T11:54:54,687 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,688 1831 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:54:54,688 | ^~ 2023-08-04T11:54:54,690 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,691 1856 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-04T11:54:54,691 | ^~ 2023-08-04T11:54:54,696 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2023-08-04T11:54:54,697 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,698 2005 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-04T11:54:54,698 | ^~ 2023-08-04T11:54:54,702 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,703 2047 | if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2023-08-04T11:54:54,703 | ^~ 2023-08-04T11:54:54,709 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2023-08-04T11:54:54,710 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,711 2178 | for (x = 0; x < strlen(ncbisym); ++x) { 2023-08-04T11:54:54,711 | ^ 2023-08-04T11:54:54,712 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,712 2179 | for (y = 0; y < strlen(abc->sym); ++y) { 2023-08-04T11:54:54,712 | ^ 2023-08-04T11:54:54,713 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,714 2187 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-08-04T11:54:54,714 | ^~ 2023-08-04T11:54:54,715 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2023-08-04T11:54:54,717 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,717 2226 | for (x = 0; x < strlen(ncbisym); ++x) { 2023-08-04T11:54:54,717 | ^ 2023-08-04T11:54:54,718 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,718 2227 | for (y = 0; y < strlen(abc->sym); ++y) { 2023-08-04T11:54:54,718 | ^ 2023-08-04T11:54:54,719 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:54,720 2235 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-08-04T11:54:54,720 | ^~ 2023-08-04T11:54:54,724 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2023-08-04T11:54:54,725 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:54:54,726 2463 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2023-08-04T11:54:54,726 | ^~ 2023-08-04T11:54:54,780 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2023-08-04T11:54:54,781 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o 2023-08-04T11:54:54,852 generating build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o from vendor/easel/easel.c 2023-08-04T11:54:54,853 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o 2023-08-04T11:54:55,085 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2023-08-04T11:54:55,086 vendor/easel/easel.c:1807:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:54:55,086 1807 | nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2023-08-04T11:54:55,086 | ^~~~~~~~~~~~~~~~ 2023-08-04T11:54:55,753 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2023-08-04T11:54:55,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o 2023-08-04T11:54:56,395 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2023-08-04T11:54:56,396 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o 2023-08-04T11:54:56,409 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2023-08-04T11:54:56,410 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o 2023-08-04T11:54:56,661 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2023-08-04T11:54:56,663 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o 2023-08-04T11:54:57,581 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2023-08-04T11:54:57,582 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o 2023-08-04T11:54:57,708 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2023-08-04T11:54:57,709 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o 2023-08-04T11:54:57,879 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2023-08-04T11:54:57,879 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o 2023-08-04T11:54:58,228 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2023-08-04T11:54:58,229 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o 2023-08-04T11:54:58,330 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2023-08-04T11:54:58,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o 2023-08-04T11:54:59,128 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2023-08-04T11:54:59,129 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o 2023-08-04T11:54:59,277 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2023-08-04T11:54:59,278 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o 2023-08-04T11:54:59,284 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2023-08-04T11:54:59,286 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o 2023-08-04T11:54:59,352 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2023-08-04T11:54:59,352 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-08-04T11:54:59,353 1636 | for (pos = 0; pos < sq->n; pos++) 2023-08-04T11:54:59,353 | ^ 2023-08-04T11:54:59,353 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-08-04T11:54:59,354 1645 | for (pos = 1; pos <= sq->n; pos++) 2023-08-04T11:54:59,354 | ^~ 2023-08-04T11:54:59,545 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2023-08-04T11:54:59,545 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o 2023-08-04T11:54:59,708 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2023-08-04T11:54:59,708 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-08-04T11:54:59,709 94 | for (h = 0; h < kh->hashsize; h++) 2023-08-04T11:54:59,709 | ^ 2023-08-04T11:54:59,710 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2023-08-04T11:54:59,711 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:59,712 171 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-04T11:54:59,712 | ^ 2023-08-04T11:54:59,713 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2023-08-04T11:54:59,714 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-08-04T11:54:59,714 215 | for (h = 0; h < kh->hashsize; h++) 2023-08-04T11:54:59,714 | ^ 2023-08-04T11:54:59,717 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2023-08-04T11:54:59,718 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:59,718 310 | if (kh->nkeys > 3*kh->hashsize) 2023-08-04T11:54:59,718 | ^ 2023-08-04T11:54:59,721 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2023-08-04T11:54:59,722 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:59,722 401 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-04T11:54:59,722 | ^ 2023-08-04T11:54:59,726 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2023-08-04T11:54:59,727 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:54:59,727 491 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-04T11:54:59,727 | ^ 2023-08-04T11:54:59,882 generating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2023-08-04T11:54:59,883 creating build/temp.linux-armv7l-cpython-39/build 2023-08-04T11:54:59,884 creating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39 2023-08-04T11:54:59,886 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2023-08-04T11:54:59,991 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2023-08-04T11:54:59,992 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o 2023-08-04T11:55:00,133 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2023-08-04T11:55:00,135 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:00,135 1669 | if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2023-08-04T11:55:00,136 | ^~ 2023-08-04T11:55:00,255 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2023-08-04T11:55:00,256 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o 2023-08-04T11:55:00,393 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2023-08-04T11:55:00,394 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o 2023-08-04T11:55:00,426 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2023-08-04T11:55:00,427 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:00,428 107 | if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2023-08-04T11:55:00,428 | ^~ 2023-08-04T11:55:00,547 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2023-08-04T11:55:00,547 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:00,548 151 | for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2023-08-04T11:55:00,548 | ^ 2023-08-04T11:55:00,663 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2023-08-04T11:55:00,664 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o 2023-08-04T11:55:01,101 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2023-08-04T11:55:01,102 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:55:01,102 474 | if (grp & cmask) { status = eslEOD; goto ERROR; } 2023-08-04T11:55:01,102 | ~~~~^~~~~~~ 2023-08-04T11:55:01,188 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2023-08-04T11:55:01,189 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o 2023-08-04T11:55:01,786 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2023-08-04T11:55:01,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o 2023-08-04T11:55:02,031 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2023-08-04T11:55:02,033 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o 2023-08-04T11:55:02,242 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2023-08-04T11:55:02,243 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o 2023-08-04T11:55:02,314 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2023-08-04T11:55:02,315 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o 2023-08-04T11:55:03,081 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2023-08-04T11:55:03,081 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o 2023-08-04T11:55:03,376 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-08-04T11:55:03,377 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:55:03,377 243 | if (opt_fx) *opt_fx = fx; 2023-08-04T11:55:03,377 | ~~~~~~~~^~~~ 2023-08-04T11:55:03,378 vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:55:03,378 720 | m = 0.5 * (a+b); 2023-08-04T11:55:03,379 | ~~^~~ 2023-08-04T11:55:03,379 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2023-08-04T11:55:03,379 118 | double ax,bx,cx; 2023-08-04T11:55:03,379 | ^~ 2023-08-04T11:55:03,380 vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-04T11:55:03,380 720 | m = 0.5 * (a+b); 2023-08-04T11:55:03,380 | ~~^~~ 2023-08-04T11:55:03,381 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2023-08-04T11:55:03,381 118 | double ax,bx,cx; 2023-08-04T11:55:03,381 | ^~ 2023-08-04T11:55:03,810 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2023-08-04T11:55:03,810 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o 2023-08-04T11:55:04,064 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2023-08-04T11:55:04,065 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o 2023-08-04T11:55:04,261 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libeasel.a build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2023-08-04T11:55:04,429 generating build/temp.linux-armv7l-cpython-39/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-39/p7_hmmfile.c 2023-08-04T11:55:04,434 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2023-08-04T11:55:04,434 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2023-08-04T11:55:04,435 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2023-08-04T11:55:04,435 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2023-08-04T11:55:04,436 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2023-08-04T11:55:04,436 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2023-08-04T11:55:04,437 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2023-08-04T11:55:04,437 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o 2023-08-04T11:55:04,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o 2023-08-04T11:55:04,442 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o 2023-08-04T11:55:04,443 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o 2023-08-04T11:55:04,631 In file included from vendor/hmmer/src/generic_msv.c:20: 2023-08-04T11:55:04,632 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:04,632 829 | #error "No vector implementation enabled" 2023-08-04T11:55:04,632 | ^~~~~ 2023-08-04T11:55:04,633 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,633 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:04,633 | ^~~~~~ 2023-08-04T11:55:04,634 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,634 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:04,634 | ^~~~~~ 2023-08-04T11:55:04,634 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,635 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:04,636 | ^~~~~~ 2023-08-04T11:55:04,636 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,636 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:04,637 | ^~~~~~ 2023-08-04T11:55:04,637 In file included from vendor/hmmer/src/build.c:32: 2023-08-04T11:55:04,637 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:04,638 829 | #error "No vector implementation enabled" 2023-08-04T11:55:04,638 | ^~~~~ 2023-08-04T11:55:04,638 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,639 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:04,639 | ^~~~~~~~~~~ 2023-08-04T11:55:04,639 | P7_PROFILE 2023-08-04T11:55:04,639 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,640 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:04,641 | ^~~~~~ 2023-08-04T11:55:04,641 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,641 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:04,642 | ^~~~~~ 2023-08-04T11:55:04,642 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,642 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:04,642 | ^~~~~~ 2023-08-04T11:55:04,642 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,643 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:04,644 | ^~~~~~ 2023-08-04T11:55:04,644 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,644 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:04,645 | ^~~~~~~~~~~ 2023-08-04T11:55:04,651 | P7_PROFILE 2023-08-04T11:55:04,652 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,652 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:04,653 | ^~~~~~~~~~~ 2023-08-04T11:55:04,653 | P7_PROFILE 2023-08-04T11:55:04,653 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,654 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:04,657 | ^~~~~~~~~~~ 2023-08-04T11:55:04,658 | P7_PROFILE 2023-08-04T11:55:04,658 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,659 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:04,659 | ^~~~~~~~~~~ 2023-08-04T11:55:04,659 | P7_PROFILE 2023-08-04T11:55:04,660 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,660 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:04,661 | ^~~~~~~~~~~ 2023-08-04T11:55:04,662 | P7_PROFILE 2023-08-04T11:55:04,662 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,662 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:04,663 | ^~~~~~~~~~~ 2023-08-04T11:55:04,663 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,663 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:04,664 | ^~~~~~~~~~~ 2023-08-04T11:55:04,665 | P7_PROFILE 2023-08-04T11:55:04,665 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,665 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:04,666 | ^~~~~~~~~~~ 2023-08-04T11:55:04,666 | P7_PROFILE 2023-08-04T11:55:04,666 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,667 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:04,668 | ^~~~~~~~~~~ 2023-08-04T11:55:04,668 | P7_PROFILE 2023-08-04T11:55:04,669 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,669 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:04,669 | ^~~~~~~~~~~ 2023-08-04T11:55:04,669 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,670 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:04,670 | ^~~~~~~~~~~ 2023-08-04T11:55:04,671 | P7_PROFILE 2023-08-04T11:55:04,671 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2023-08-04T11:55:04,700 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:04,700 829 | #error "No vector implementation enabled" 2023-08-04T11:55:04,701 | ^~~~~ 2023-08-04T11:55:04,702 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,702 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:04,702 | ^~~~~~ 2023-08-04T11:55:04,703 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,703 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:04,703 | ^~~~~~~~~~~ 2023-08-04T11:55:04,703 | P7_PROFILE 2023-08-04T11:55:04,704 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,704 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:04,705 | ^~~~~~ 2023-08-04T11:55:04,705 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,705 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:04,706 | ^~~~~~ 2023-08-04T11:55:04,707 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,708 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,708 | ^~~~~~~~~~~ 2023-08-04T11:55:04,708 | P7_PROFILE 2023-08-04T11:55:04,709 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,709 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:04,710 | ^~~~~~ 2023-08-04T11:55:04,710 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,710 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:04,711 | ^~~~~~~~~~~ 2023-08-04T11:55:04,711 | P7_PROFILE 2023-08-04T11:55:04,711 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,711 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,712 | ^~~~~~ 2023-08-04T11:55:04,712 | P7_GMX 2023-08-04T11:55:04,712 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,712 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:04,713 | ^~~~~~~~~~~ 2023-08-04T11:55:04,717 | P7_PROFILE 2023-08-04T11:55:04,718 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,719 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,720 | ^~~~~~ 2023-08-04T11:55:04,720 | P7_GMX 2023-08-04T11:55:04,721 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,721 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,722 | ^~~~~~~~~~~ 2023-08-04T11:55:04,722 | P7_PROFILE 2023-08-04T11:55:04,722 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,723 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:04,723 | ^~~~~~~~~~~ 2023-08-04T11:55:04,723 | P7_PROFILE 2023-08-04T11:55:04,723 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,723 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,724 | ^~~~~~ 2023-08-04T11:55:04,724 | P7_GMX 2023-08-04T11:55:04,724 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,725 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,725 | ^~~~~~ 2023-08-04T11:55:04,725 | P7_GMX 2023-08-04T11:55:04,726 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,726 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:04,726 | ^~~~~~~~~~~ 2023-08-04T11:55:04,727 | P7_PROFILE 2023-08-04T11:55:04,727 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,728 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,728 | ^~~~~~ 2023-08-04T11:55:04,729 | P7_GMX 2023-08-04T11:55:04,729 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,730 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,730 | ^~~~~~ 2023-08-04T11:55:04,730 | P7_GMX 2023-08-04T11:55:04,731 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,731 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,731 | ^~~~~~ 2023-08-04T11:55:04,731 | P7_GMX 2023-08-04T11:55:04,732 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,732 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:04,732 | ^~~~~~~~~~~ 2023-08-04T11:55:04,732 | P7_PROFILE 2023-08-04T11:55:04,734 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,734 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:04,734 | ^~~~~~~~~~~ 2023-08-04T11:55:04,735 | P7_PROFILE 2023-08-04T11:55:04,735 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,735 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,735 | ^~~~~~ 2023-08-04T11:55:04,735 | P7_GMX 2023-08-04T11:55:04,735 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,736 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:04,736 | ^~~~~~~~~~~ 2023-08-04T11:55:04,736 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,736 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:04,737 | ^~~~~~~~~~~ 2023-08-04T11:55:04,737 | P7_PROFILE 2023-08-04T11:55:04,737 In file included from vendor/hmmer/src/errors.c:19: 2023-08-04T11:55:04,737 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:04,738 829 | #error "No vector implementation enabled" 2023-08-04T11:55:04,738 | ^~~~~ 2023-08-04T11:55:04,738 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,738 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:04,739 | ^~~~~~~~~~~ 2023-08-04T11:55:04,739 | P7_PROFILE 2023-08-04T11:55:04,739 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,740 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:04,740 | ^~~~~~~~~~~ 2023-08-04T11:55:04,740 | P7_PROFILE 2023-08-04T11:55:04,740 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,741 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:04,741 | ^~~~~~ 2023-08-04T11:55:04,741 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,742 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:04,742 | ^~~~~~~~~~~ 2023-08-04T11:55:04,742 | P7_PROFILE 2023-08-04T11:55:04,743 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,743 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:04,743 | ^~~~~~ 2023-08-04T11:55:04,744 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,744 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:04,744 | ^~~~~~ 2023-08-04T11:55:04,745 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,746 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:04,746 | ^~~~~~ 2023-08-04T11:55:04,746 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,746 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:04,746 | ^~~~~~~~~~~ 2023-08-04T11:55:04,747 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,747 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:04,747 | ^~~~~~~~~~~ 2023-08-04T11:55:04,747 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,748 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:04,748 | ^~~~~~~~~~~ 2023-08-04T11:55:04,748 | P7_PROFILE 2023-08-04T11:55:04,749 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,749 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:04,749 | ^~~~~~~~~~~ 2023-08-04T11:55:04,750 | P7_PROFILE 2023-08-04T11:55:04,750 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,750 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:04,751 | ^~~~~~~~~~~ 2023-08-04T11:55:04,751 | P7_PROFILE 2023-08-04T11:55:04,751 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,751 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:04,753 | ^~~~~~~~~~~ 2023-08-04T11:55:04,753 | P7_PROFILE 2023-08-04T11:55:04,754 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,754 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,754 | ^~~~~~~~~~~ 2023-08-04T11:55:04,754 | P7_PROFILE 2023-08-04T11:55:04,755 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,755 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:04,756 | ^~~~~~~~~~~ 2023-08-04T11:55:04,756 | P7_PROFILE 2023-08-04T11:55:04,757 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,757 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:04,758 | ^~~~~~~~~~~ 2023-08-04T11:55:04,758 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,758 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:04,759 | ^~~~~~~~~~~ 2023-08-04T11:55:04,759 | P7_PROFILE 2023-08-04T11:55:04,759 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,760 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:04,760 | ^~~~~~~~~~~ 2023-08-04T11:55:04,760 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,761 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:04,761 | ^~~~~~~~~~~ 2023-08-04T11:55:04,762 | P7_PROFILE 2023-08-04T11:55:04,763 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,764 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,764 | ^~~~~~ 2023-08-04T11:55:04,764 | P7_GMX 2023-08-04T11:55:04,765 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,765 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:04,765 | ^~~~~~~~~~~ 2023-08-04T11:55:04,766 | P7_PROFILE 2023-08-04T11:55:04,766 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,766 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:04,767 | ^~~~~~~~~~~ 2023-08-04T11:55:04,767 | P7_PROFILE 2023-08-04T11:55:04,767 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,767 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,768 | ^~~~~~ 2023-08-04T11:55:04,768 | P7_GMX 2023-08-04T11:55:04,768 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,769 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:04,770 | ^~~~~~~~~~~ 2023-08-04T11:55:04,770 | P7_PROFILE 2023-08-04T11:55:04,771 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,771 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:04,771 | ^~~~~~~~~~~ 2023-08-04T11:55:04,772 | P7_PROFILE 2023-08-04T11:55:04,772 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,772 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:04,772 | ^~~~~~~~~~~ 2023-08-04T11:55:04,773 | P7_PROFILE 2023-08-04T11:55:04,773 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,773 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,773 | ^~~~~~ 2023-08-04T11:55:04,774 | P7_GMX 2023-08-04T11:55:04,774 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,774 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:04,774 | ^~~~~~~~~~~ 2023-08-04T11:55:04,775 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,775 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,775 | ^~~~~~ 2023-08-04T11:55:04,775 | P7_GMX 2023-08-04T11:55:04,775 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,775 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:04,776 | ^~~~~~~~~~~ 2023-08-04T11:55:04,776 | P7_PROFILE 2023-08-04T11:55:04,776 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,776 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:04,776 | ^~~~~~~~~~~ 2023-08-04T11:55:04,777 | P7_PROFILE 2023-08-04T11:55:04,777 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,777 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:04,777 | ^~~~~~~~~~~ 2023-08-04T11:55:04,777 | P7_PROFILE 2023-08-04T11:55:04,777 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,778 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:04,778 | ^~~~~~~~~~~ 2023-08-04T11:55:04,778 | P7_PROFILE 2023-08-04T11:55:04,778 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,779 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:04,779 | ^~~~~~~~~~~ 2023-08-04T11:55:04,779 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,780 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:04,780 | ^~~~~~~~~~~ 2023-08-04T11:55:04,780 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,780 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:04,781 | ^~~~~~~~~~~ 2023-08-04T11:55:04,781 | P7_PROFILE 2023-08-04T11:55:04,781 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,781 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:04,781 | ^~~~~~~~~~~ 2023-08-04T11:55:04,782 | P7_PROFILE 2023-08-04T11:55:04,782 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2023-08-04T11:55:04,782 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o 2023-08-04T11:55:04,782 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,782 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,783 | ^~~~~~~~~~~ 2023-08-04T11:55:04,783 | P7_PROFILE 2023-08-04T11:55:04,783 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,783 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,784 | ^~~~~~ 2023-08-04T11:55:04,784 | P7_GMX 2023-08-04T11:55:04,784 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,784 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:04,784 | ^~~~~~~~~~~ 2023-08-04T11:55:04,785 | P7_PROFILE 2023-08-04T11:55:04,785 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,785 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,785 | ^~~~~~ 2023-08-04T11:55:04,786 | P7_GMX 2023-08-04T11:55:04,786 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,786 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:04,786 | ^~~~~~~~~~~ 2023-08-04T11:55:04,787 | P7_PROFILE 2023-08-04T11:55:04,787 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,787 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,787 | ^~~~~~ 2023-08-04T11:55:04,788 | P7_GMX 2023-08-04T11:55:04,788 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,788 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,788 | ^~~~~~ 2023-08-04T11:55:04,788 | P7_GMX 2023-08-04T11:55:04,789 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2023-08-04T11:55:04,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o 2023-08-04T11:55:04,789 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,789 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:04,790 | ^~~~~~~~~~~ 2023-08-04T11:55:04,790 | P7_PROFILE 2023-08-04T11:55:04,790 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,790 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:04,791 | ^~~~~~~~~~~ 2023-08-04T11:55:04,791 | P7_PROFILE 2023-08-04T11:55:04,791 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,791 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:04,792 | ^~~~~~~~~~~ 2023-08-04T11:55:04,792 | P7_PROFILE 2023-08-04T11:55:04,792 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,792 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:04,793 | ^~~~~~~~~~~ 2023-08-04T11:55:04,793 | P7_PROFILE 2023-08-04T11:55:04,793 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,793 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:04,793 | ^~~~~~~~~~~ 2023-08-04T11:55:04,794 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,794 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:04,794 | ^~~~~~~~~~~ 2023-08-04T11:55:04,794 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,794 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:04,794 | ^~~~~~~~~~~ 2023-08-04T11:55:04,795 | P7_PROFILE 2023-08-04T11:55:04,795 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,795 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:04,796 | ^~~~~~~~~~~ 2023-08-04T11:55:04,796 | P7_PROFILE 2023-08-04T11:55:04,796 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,796 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:04,797 | ^~~~~~~~~~~ 2023-08-04T11:55:04,797 | P7_PROFILE 2023-08-04T11:55:04,797 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2023-08-04T11:55:04,797 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o 2023-08-04T11:55:04,798 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2023-08-04T11:55:04,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o 2023-08-04T11:55:04,861 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2023-08-04T11:55:04,862 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o 2023-08-04T11:55:04,879 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2023-08-04T11:55:04,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o 2023-08-04T11:55:04,948 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2023-08-04T11:55:04,949 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o 2023-08-04T11:55:04,961 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2023-08-04T11:55:04,961 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:04,961 829 | #error "No vector implementation enabled" 2023-08-04T11:55:04,962 | ^~~~~ 2023-08-04T11:55:04,962 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,963 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:04,963 | ^~~~~~ 2023-08-04T11:55:04,963 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,963 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:04,963 | ^~~~~~ 2023-08-04T11:55:04,964 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,964 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:04,964 | ^~~~~~ 2023-08-04T11:55:04,965 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:04,965 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:04,966 | ^~~~~~ 2023-08-04T11:55:04,967 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,968 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:04,968 | ^~~~~~~~~~~ 2023-08-04T11:55:04,968 | P7_PROFILE 2023-08-04T11:55:04,969 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,970 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:04,971 | ^~~~~~~~~~~ 2023-08-04T11:55:04,971 | P7_PROFILE 2023-08-04T11:55:04,973 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,974 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:04,974 | ^~~~~~~~~~~ 2023-08-04T11:55:04,974 | P7_PROFILE 2023-08-04T11:55:04,975 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,975 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:04,975 | ^~~~~~~~~~~ 2023-08-04T11:55:04,976 | P7_PROFILE 2023-08-04T11:55:04,978 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:04,979 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:04,979 | ^~~~~~~~~~~ 2023-08-04T11:55:04,981 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,982 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:04,982 | ^~~~~~~~~~~ 2023-08-04T11:55:04,983 | P7_PROFILE 2023-08-04T11:55:04,986 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2023-08-04T11:55:04,986 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o 2023-08-04T11:55:04,990 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,990 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:04,991 | ^~~~~~~~~~~ 2023-08-04T11:55:04,991 | P7_PROFILE 2023-08-04T11:55:04,994 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:04,994 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,995 | ^~~~~~~~~~~ 2023-08-04T11:55:04,995 | P7_PROFILE 2023-08-04T11:55:04,996 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:04,997 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:04,997 | ^~~~~~ 2023-08-04T11:55:04,998 | P7_GMX 2023-08-04T11:55:04,999 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,000 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,000 | ^~~~~~ 2023-08-04T11:55:05,001 | P7_GMX 2023-08-04T11:55:05,005 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,005 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,005 | ^~~~~~ 2023-08-04T11:55:05,006 | P7_GMX 2023-08-04T11:55:05,006 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,006 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,007 | ^~~~~~ 2023-08-04T11:55:05,007 | P7_GMX 2023-08-04T11:55:05,009 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,010 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,010 | ^~~~~~~~~~~ 2023-08-04T11:55:05,011 | P7_PROFILE 2023-08-04T11:55:05,022 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,022 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,023 | ^~~~~~~~~~~ 2023-08-04T11:55:05,023 | P7_PROFILE 2023-08-04T11:55:05,023 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,023 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,023 | ^~~~~~~~~~~ 2023-08-04T11:55:05,023 | P7_PROFILE 2023-08-04T11:55:05,024 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,024 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,024 | ^~~~~~~~~~~ 2023-08-04T11:55:05,024 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,025 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,025 | ^~~~~~~~~~~ 2023-08-04T11:55:05,026 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,026 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,026 | ^~~~~~~~~~~ 2023-08-04T11:55:05,026 | P7_PROFILE 2023-08-04T11:55:05,027 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,027 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,027 | ^~~~~~~~~~~ 2023-08-04T11:55:05,027 | P7_PROFILE 2023-08-04T11:55:05,027 In file included from vendor/hmmer/src/modelconfig.c:25: 2023-08-04T11:55:05,028 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,028 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,028 | ^~~~~ 2023-08-04T11:55:05,028 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,029 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,029 | ^~~~~~~~~~~ 2023-08-04T11:55:05,029 | P7_PROFILE 2023-08-04T11:55:05,029 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,030 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,030 | ^~~~~~ 2023-08-04T11:55:05,030 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,031 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,031 | ^~~~~~ 2023-08-04T11:55:05,032 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,032 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,032 | ^~~~~~ 2023-08-04T11:55:05,032 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,033 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,033 | ^~~~~~ 2023-08-04T11:55:05,033 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,034 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,034 | ^~~~~~~~~~~ 2023-08-04T11:55:05,034 | P7_PROFILE 2023-08-04T11:55:05,037 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,038 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,038 | ^~~~~~~~~~~ 2023-08-04T11:55:05,038 | P7_PROFILE 2023-08-04T11:55:05,040 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,040 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,041 | ^~~~~~~~~~~ 2023-08-04T11:55:05,042 | P7_PROFILE 2023-08-04T11:55:05,043 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,043 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,044 | ^~~~~~~~~~~ 2023-08-04T11:55:05,044 | P7_PROFILE 2023-08-04T11:55:05,045 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,047 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,048 | ^~~~~~~~~~~ 2023-08-04T11:55:05,049 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,050 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,050 | ^~~~~~~~~~~ 2023-08-04T11:55:05,050 | P7_PROFILE 2023-08-04T11:55:05,052 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,052 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,053 | ^~~~~~~~~~~ 2023-08-04T11:55:05,053 | P7_PROFILE 2023-08-04T11:55:05,053 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2023-08-04T11:55:05,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o 2023-08-04T11:55:05,055 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,056 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,056 | ^~~~~~~~~~~ 2023-08-04T11:55:05,057 | P7_PROFILE 2023-08-04T11:55:05,058 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,059 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,059 | ^~~~~~ 2023-08-04T11:55:05,059 | P7_GMX 2023-08-04T11:55:05,061 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,062 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,062 | ^~~~~~ 2023-08-04T11:55:05,063 | P7_GMX 2023-08-04T11:55:05,064 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,065 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,065 | ^~~~~~ 2023-08-04T11:55:05,066 | P7_GMX 2023-08-04T11:55:05,067 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,068 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,068 | ^~~~~~ 2023-08-04T11:55:05,068 | P7_GMX 2023-08-04T11:55:05,072 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,073 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,073 | ^~~~~~~~~~~ 2023-08-04T11:55:05,073 | P7_PROFILE 2023-08-04T11:55:05,075 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,076 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,076 | ^~~~~~~~~~~ 2023-08-04T11:55:05,077 | P7_PROFILE 2023-08-04T11:55:05,078 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,079 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,079 | ^~~~~~~~~~~ 2023-08-04T11:55:05,079 | P7_PROFILE 2023-08-04T11:55:05,079 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,080 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,080 | ^~~~~~~~~~~ 2023-08-04T11:55:05,081 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,081 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,082 | ^~~~~~~~~~~ 2023-08-04T11:55:05,083 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,084 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,084 | ^~~~~~~~~~~ 2023-08-04T11:55:05,084 | P7_PROFILE 2023-08-04T11:55:05,086 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,086 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,087 | ^~~~~~~~~~~ 2023-08-04T11:55:05,087 | P7_PROFILE 2023-08-04T11:55:05,092 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,092 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,092 | ^~~~~~~~~~~ 2023-08-04T11:55:05,093 | P7_PROFILE 2023-08-04T11:55:05,115 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2023-08-04T11:55:05,116 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o 2023-08-04T11:55:05,201 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2023-08-04T11:55:05,201 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,202 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,202 | ^~~~~ 2023-08-04T11:55:05,202 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,203 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,203 | ^~~~~~ 2023-08-04T11:55:05,203 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,203 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,204 | ^~~~~~ 2023-08-04T11:55:05,204 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,204 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,205 | ^~~~~~ 2023-08-04T11:55:05,205 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,206 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,206 | ^~~~~~ 2023-08-04T11:55:05,206 In file included from vendor/hmmer/src/hmmer.c:18: 2023-08-04T11:55:05,206 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,206 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,207 | ^~~~~ 2023-08-04T11:55:05,207 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,208 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,208 | ^~~~~~~~~~~ 2023-08-04T11:55:05,208 | P7_PROFILE 2023-08-04T11:55:05,209 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,209 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,209 | ^~~~~~ 2023-08-04T11:55:05,210 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,210 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,211 | ^~~~~~ 2023-08-04T11:55:05,212 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,212 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,213 | ^~~~~~ 2023-08-04T11:55:05,213 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,214 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,214 | ^~~~~~ 2023-08-04T11:55:05,215 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,215 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,215 | ^~~~~~~~~~~ 2023-08-04T11:55:05,215 | P7_PROFILE 2023-08-04T11:55:05,216 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,216 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,217 | ^~~~~~~~~~~ 2023-08-04T11:55:05,217 | P7_PROFILE 2023-08-04T11:55:05,217 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,217 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,218 | ^~~~~~~~~~~ 2023-08-04T11:55:05,218 | P7_PROFILE 2023-08-04T11:55:05,218 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,218 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,219 | ^~~~~~~~~~~ 2023-08-04T11:55:05,220 | P7_PROFILE 2023-08-04T11:55:05,220 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,220 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,221 | ^~~~~~~~~~~ 2023-08-04T11:55:05,221 | P7_PROFILE 2023-08-04T11:55:05,221 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,221 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,222 | ^~~~~~~~~~~ 2023-08-04T11:55:05,232 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,233 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,233 | ^~~~~~~~~~~ 2023-08-04T11:55:05,233 | P7_PROFILE 2023-08-04T11:55:05,234 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,234 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,235 | ^~~~~~~~~~~ 2023-08-04T11:55:05,235 | P7_PROFILE 2023-08-04T11:55:05,236 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,239 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,239 | ^~~~~~~~~~~ 2023-08-04T11:55:05,240 | P7_PROFILE 2023-08-04T11:55:05,240 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,240 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,240 | ^~~~~~~~~~~ 2023-08-04T11:55:05,241 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,241 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,241 | ^~~~~~~~~~~ 2023-08-04T11:55:05,242 | P7_PROFILE 2023-08-04T11:55:05,243 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,243 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,243 | ^~~~~~~~~~~ 2023-08-04T11:55:05,244 | P7_PROFILE 2023-08-04T11:55:05,244 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,244 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,244 | ^~~~~~~~~~~ 2023-08-04T11:55:05,245 | P7_PROFILE 2023-08-04T11:55:05,245 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,246 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,246 | ^~~~~~ 2023-08-04T11:55:05,247 | P7_GMX 2023-08-04T11:55:05,247 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,247 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,247 | ^~~~~~~~~~~ 2023-08-04T11:55:05,247 | P7_PROFILE 2023-08-04T11:55:05,248 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,248 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,249 | ^~~~~~ 2023-08-04T11:55:05,249 | P7_GMX 2023-08-04T11:55:05,249 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,249 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,250 | ^~~~~~~~~~~ 2023-08-04T11:55:05,250 | P7_PROFILE 2023-08-04T11:55:05,251 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,251 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,251 | ^~~~~~ 2023-08-04T11:55:05,251 | P7_GMX 2023-08-04T11:55:05,254 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,262 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,262 | ^~~~~~ 2023-08-04T11:55:05,262 | P7_GMX 2023-08-04T11:55:05,262 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,263 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,263 | ^~~~~~ 2023-08-04T11:55:05,263 | P7_GMX 2023-08-04T11:55:05,263 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,264 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,264 | ^~~~~~ 2023-08-04T11:55:05,264 | P7_GMX 2023-08-04T11:55:05,265 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,265 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,265 | ^~~~~~~~~~~ 2023-08-04T11:55:05,266 | P7_PROFILE 2023-08-04T11:55:05,266 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,266 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,266 | ^~~~~~ 2023-08-04T11:55:05,266 | P7_GMX 2023-08-04T11:55:05,267 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,267 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,267 | ^~~~~~~~~~~ 2023-08-04T11:55:05,267 | P7_PROFILE 2023-08-04T11:55:05,268 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,268 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,268 | ^~~~~~ 2023-08-04T11:55:05,269 | P7_GMX 2023-08-04T11:55:05,270 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,271 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,271 | ^~~~~~~~~~~ 2023-08-04T11:55:05,273 | P7_PROFILE 2023-08-04T11:55:05,280 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,280 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,281 | ^~~~~~~~~~~ 2023-08-04T11:55:05,281 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,281 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,281 | ^~~~~~~~~~~ 2023-08-04T11:55:05,281 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,282 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,282 | ^~~~~~~~~~~ 2023-08-04T11:55:05,282 | P7_PROFILE 2023-08-04T11:55:05,282 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,282 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,283 | ^~~~~~~~~~~ 2023-08-04T11:55:05,283 | P7_PROFILE 2023-08-04T11:55:05,283 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,284 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,284 | ^~~~~~~~~~~ 2023-08-04T11:55:05,284 | P7_PROFILE 2023-08-04T11:55:05,284 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,284 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,285 | ^~~~~~~~~~~ 2023-08-04T11:55:05,285 | P7_PROFILE 2023-08-04T11:55:05,285 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,285 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,286 | ^~~~~~~~~~~ 2023-08-04T11:55:05,287 | P7_PROFILE 2023-08-04T11:55:05,287 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,287 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,288 | ^~~~~~~~~~~ 2023-08-04T11:55:05,288 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,288 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,288 | ^~~~~~~~~~~ 2023-08-04T11:55:05,289 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,289 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,289 | ^~~~~~~~~~~ 2023-08-04T11:55:05,290 | P7_PROFILE 2023-08-04T11:55:05,290 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,290 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,290 | ^~~~~~~~~~~ 2023-08-04T11:55:05,291 | P7_PROFILE 2023-08-04T11:55:05,291 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,291 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,291 | ^~~~~~~~~~~ 2023-08-04T11:55:05,291 | P7_PROFILE 2023-08-04T11:55:05,292 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,292 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,292 | ^~~~~~~~~~~ 2023-08-04T11:55:05,293 | P7_PROFILE 2023-08-04T11:55:05,293 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2023-08-04T11:55:05,293 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o 2023-08-04T11:55:05,298 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2023-08-04T11:55:05,299 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o 2023-08-04T11:55:05,327 In file included from vendor/hmmer/src/tracealign.c:15: 2023-08-04T11:55:05,328 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,328 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,328 | ^~~~~ 2023-08-04T11:55:05,329 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,329 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,329 | ^~~~~~ 2023-08-04T11:55:05,329 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,330 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,330 | ^~~~~~ 2023-08-04T11:55:05,330 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,330 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,330 | ^~~~~~ 2023-08-04T11:55:05,331 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,331 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,332 | ^~~~~~ 2023-08-04T11:55:05,333 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,334 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,334 | ^~~~~~~~~~~ 2023-08-04T11:55:05,334 | P7_PROFILE 2023-08-04T11:55:05,336 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,336 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,337 | ^~~~~~~~~~~ 2023-08-04T11:55:05,337 | P7_PROFILE 2023-08-04T11:55:05,338 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,339 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,339 | ^~~~~~~~~~~ 2023-08-04T11:55:05,340 | P7_PROFILE 2023-08-04T11:55:05,342 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,343 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,343 | ^~~~~~~~~~~ 2023-08-04T11:55:05,343 | P7_PROFILE 2023-08-04T11:55:05,343 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,344 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,344 | ^~~~~~~~~~~ 2023-08-04T11:55:05,346 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,347 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,347 | ^~~~~~~~~~~ 2023-08-04T11:55:05,348 | P7_PROFILE 2023-08-04T11:55:05,349 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,350 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,350 | ^~~~~~~~~~~ 2023-08-04T11:55:05,351 | P7_PROFILE 2023-08-04T11:55:05,352 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,353 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,354 | ^~~~~~~~~~~ 2023-08-04T11:55:05,354 | P7_PROFILE 2023-08-04T11:55:05,355 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,357 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,358 | ^~~~~~ 2023-08-04T11:55:05,358 | P7_GMX 2023-08-04T11:55:05,360 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,360 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,360 | ^~~~~~ 2023-08-04T11:55:05,361 | P7_GMX 2023-08-04T11:55:05,363 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,364 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,364 | ^~~~~~ 2023-08-04T11:55:05,366 | P7_GMX 2023-08-04T11:55:05,367 In file included from vendor/hmmer/src/p7_domain.c:16: 2023-08-04T11:55:05,367 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,368 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,368 | ^~~~~ 2023-08-04T11:55:05,370 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,371 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,373 | ^~~~~~ 2023-08-04T11:55:05,373 | P7_GMX 2023-08-04T11:55:05,373 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,374 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,375 | ^~~~~~ 2023-08-04T11:55:05,377 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,377 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,378 | ^~~~~~ 2023-08-04T11:55:05,379 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,380 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,381 | ^~~~~~ 2023-08-04T11:55:05,382 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,382 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,383 | ^~~~~~~~~~~ 2023-08-04T11:55:05,385 | P7_PROFILE 2023-08-04T11:55:05,385 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,386 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,386 | ^~~~~~ 2023-08-04T11:55:05,386 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,386 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,386 | ^~~~~~~~~~~ 2023-08-04T11:55:05,387 | P7_PROFILE 2023-08-04T11:55:05,387 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,387 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,387 | ^~~~~~~~~~~ 2023-08-04T11:55:05,387 | P7_PROFILE 2023-08-04T11:55:05,388 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,391 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,391 | ^~~~~~~~~~~ 2023-08-04T11:55:05,392 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,392 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,392 | ^~~~~~~~~~~ 2023-08-04T11:55:05,392 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,393 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,396 | ^~~~~~~~~~~ 2023-08-04T11:55:05,397 | P7_PROFILE 2023-08-04T11:55:05,397 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,398 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,399 | ^~~~~~~~~~~ 2023-08-04T11:55:05,401 | P7_PROFILE 2023-08-04T11:55:05,402 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,402 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,403 | ^~~~~~~~~~~ 2023-08-04T11:55:05,403 | P7_PROFILE 2023-08-04T11:55:05,404 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,405 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,406 | ^~~~~~~~~~~ 2023-08-04T11:55:05,406 | P7_PROFILE 2023-08-04T11:55:05,407 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,409 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,410 | ^~~~~~~~~~~ 2023-08-04T11:55:05,412 | P7_PROFILE 2023-08-04T11:55:05,412 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,413 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,413 | ^~~~~~~~~~~ 2023-08-04T11:55:05,413 | P7_PROFILE 2023-08-04T11:55:05,413 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2023-08-04T11:55:05,414 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,415 239 | P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2023-08-04T11:55:05,416 | ^~~~~~ 2023-08-04T11:55:05,416 | P7_GMX 2023-08-04T11:55:05,417 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,419 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,419 | ^~~~~~~~~~~ 2023-08-04T11:55:05,420 | P7_PROFILE 2023-08-04T11:55:05,420 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,421 240 | P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2023-08-04T11:55:05,422 | ^~~~~~ 2023-08-04T11:55:05,424 | P7_GMX 2023-08-04T11:55:05,425 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,425 244 | P7_OPROFILE *om = NULL; 2023-08-04T11:55:05,425 | ^~~~~~~~~~~ 2023-08-04T11:55:05,426 | P7_PROFILE 2023-08-04T11:55:05,427 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,427 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,428 | ^~~~~~~~~~~ 2023-08-04T11:55:05,429 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,429 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-08-04T11:55:05,429 | ^~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,430 | p7_profile_Create 2023-08-04T11:55:05,430 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-08-04T11:55:05,430 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2023-08-04T11:55:05,431 | ^ 2023-08-04T11:55:05,431 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,431 258 | p7_oprofile_Convert(gm, om); 2023-08-04T11:55:05,432 | ^~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,432 | p7_profile_Compare 2023-08-04T11:55:05,432 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,432 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-08-04T11:55:05,432 | ^~~~~~~~~~~~~ 2023-08-04T11:55:05,433 | p7_gmx_Create 2023-08-04T11:55:05,433 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-08-04T11:55:05,433 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-08-04T11:55:05,433 | ^ 2023-08-04T11:55:05,433 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,434 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,434 | ^~~~~~~~~~~ 2023-08-04T11:55:05,434 | P7_PROFILE 2023-08-04T11:55:05,435 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2023-08-04T11:55:05,435 262 | oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2023-08-04T11:55:05,435 | ^ 2023-08-04T11:55:05,436 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,437 271 | p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2023-08-04T11:55:05,437 | ^~~~~~~~~~~~~ 2023-08-04T11:55:05,438 | p7_gmx_GrowTo 2023-08-04T11:55:05,438 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,438 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,438 | ^~~~~~~~~~~ 2023-08-04T11:55:05,439 | P7_PROFILE 2023-08-04T11:55:05,440 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,440 274 | p7_oprofile_ReconfigLength(om, sq[idx]->n); 2023-08-04T11:55:05,440 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,441 | p7_ReconfigLength 2023-08-04T11:55:05,441 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,441 276 | p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2023-08-04T11:55:05,441 | ^~~~~~~~~~ 2023-08-04T11:55:05,442 | p7_GForward 2023-08-04T11:55:05,442 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,442 277 | p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2023-08-04T11:55:05,443 | ^~~~~~~~~~~ 2023-08-04T11:55:05,443 | p7_GBackward 2023-08-04T11:55:05,443 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,443 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,443 | ^~~~~~~~~~~ 2023-08-04T11:55:05,444 | P7_PROFILE 2023-08-04T11:55:05,444 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,444 279 | status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2023-08-04T11:55:05,444 | ^~~~~~~~~~~ 2023-08-04T11:55:05,444 | p7_GDecoding 2023-08-04T11:55:05,444 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,445 283 | p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2023-08-04T11:55:05,445 | ^~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,445 | p7_GOptimalAccuracy 2023-08-04T11:55:05,445 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,446 284 | p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2023-08-04T11:55:05,446 | ^~~~~~~~~~ 2023-08-04T11:55:05,446 | p7_GOATrace 2023-08-04T11:55:05,446 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,446 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,446 | ^~~~~~ 2023-08-04T11:55:05,447 | P7_GMX 2023-08-04T11:55:05,447 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,447 346 | p7_omx_Reuse(oxf); 2023-08-04T11:55:05,447 | ^~~~~~~~~~~~ 2023-08-04T11:55:05,448 | p7_gmx_Reuse 2023-08-04T11:55:05,448 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,448 357 | p7_omx_Destroy(oxf); 2023-08-04T11:55:05,449 | ^~~~~~~~~~~~~~ 2023-08-04T11:55:05,449 | p7_gmx_Destroy 2023-08-04T11:55:05,449 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,450 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,451 | ^~~~~~ 2023-08-04T11:55:05,451 | P7_GMX 2023-08-04T11:55:05,451 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,452 363 | p7_oprofile_Destroy(om); 2023-08-04T11:55:05,452 | ^~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,452 | p7_profile_Destroy 2023-08-04T11:55:05,452 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,453 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,453 | ^~~~~~ 2023-08-04T11:55:05,453 | P7_GMX 2023-08-04T11:55:05,453 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,454 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,454 | ^~~~~~ 2023-08-04T11:55:05,455 | P7_GMX 2023-08-04T11:55:05,456 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,457 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,458 | ^~~~~~~~~~~ 2023-08-04T11:55:05,458 | P7_PROFILE 2023-08-04T11:55:05,459 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,460 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,460 | ^~~~~~~~~~~ 2023-08-04T11:55:05,461 | P7_PROFILE 2023-08-04T11:55:05,463 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,463 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,463 | ^~~~~~~~~~~ 2023-08-04T11:55:05,463 | P7_PROFILE 2023-08-04T11:55:05,464 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,464 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,465 | ^~~~~~~~~~~ 2023-08-04T11:55:05,465 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,465 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,466 | ^~~~~~~~~~~ 2023-08-04T11:55:05,467 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,467 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,468 | ^~~~~~~~~~~ 2023-08-04T11:55:05,468 | P7_PROFILE 2023-08-04T11:55:05,470 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,470 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,470 | ^~~~~~~~~~~ 2023-08-04T11:55:05,471 | P7_PROFILE 2023-08-04T11:55:05,475 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,475 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,475 | ^~~~~~~~~~~ 2023-08-04T11:55:05,476 | P7_PROFILE 2023-08-04T11:55:05,478 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2023-08-04T11:55:05,478 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,478 191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2023-08-04T11:55:05,479 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,479 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,479 198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2023-08-04T11:55:05,479 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,479 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,480 203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2023-08-04T11:55:05,480 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,480 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,480 208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2023-08-04T11:55:05,481 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,482 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,483 213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2023-08-04T11:55:05,483 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,484 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,484 218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-08-04T11:55:05,485 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,485 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:05,485 253 | if (ser_size != ptr - (*buf + *n)){ 2023-08-04T11:55:05,486 | ^~ 2023-08-04T11:55:05,486 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2023-08-04T11:55:05,486 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,487 341 | ret_obj->envsc = *((float *) &host_32bit); 2023-08-04T11:55:05,487 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,487 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,488 347 | ret_obj->domcorrection = *((float *) &host_32bit); 2023-08-04T11:55:05,488 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,488 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,489 353 | ret_obj->dombias = *((float *) &host_32bit); 2023-08-04T11:55:05,489 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,489 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,490 359 | ret_obj->oasc = *((float *) &host_32bit); 2023-08-04T11:55:05,491 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,492 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,492 365 | ret_obj->bitscore = *((float *) &host_32bit); 2023-08-04T11:55:05,493 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,493 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,493 371 | ret_obj->lnP = *((double *) &host_64bit); 2023-08-04T11:55:05,493 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,494 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-04T11:55:05,494 398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2023-08-04T11:55:05,494 | ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,495 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,495 404 | if(ptr - (buf + *n) != obj_size){ 2023-08-04T11:55:05,495 | ^~ 2023-08-04T11:55:05,509 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2023-08-04T11:55:05,510 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o 2023-08-04T11:55:05,513 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2023-08-04T11:55:05,513 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,513 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,514 | ^~~~~ 2023-08-04T11:55:05,514 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,515 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,515 | ^~~~~~ 2023-08-04T11:55:05,515 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,516 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,516 | ^~~~~~ 2023-08-04T11:55:05,516 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,516 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,517 | ^~~~~~ 2023-08-04T11:55:05,517 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,518 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,518 | ^~~~~~ 2023-08-04T11:55:05,519 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,520 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,520 | ^~~~~~~~~~~ 2023-08-04T11:55:05,521 | P7_PROFILE 2023-08-04T11:55:05,523 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2023-08-04T11:55:05,525 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o 2023-08-04T11:55:05,530 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,531 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,532 | ^~~~~~~~~~~ 2023-08-04T11:55:05,532 | P7_PROFILE 2023-08-04T11:55:05,534 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,534 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,535 | ^~~~~~~~~~~ 2023-08-04T11:55:05,535 | P7_PROFILE 2023-08-04T11:55:05,537 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,537 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,538 | ^~~~~~~~~~~ 2023-08-04T11:55:05,538 | P7_PROFILE 2023-08-04T11:55:05,540 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,541 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,541 | ^~~~~~~~~~~ 2023-08-04T11:55:05,545 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,545 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,546 | ^~~~~~~~~~~ 2023-08-04T11:55:05,546 | P7_PROFILE 2023-08-04T11:55:05,548 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,548 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,549 | ^~~~~~~~~~~ 2023-08-04T11:55:05,549 | P7_PROFILE 2023-08-04T11:55:05,551 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,552 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,552 | ^~~~~~~~~~~ 2023-08-04T11:55:05,553 | P7_PROFILE 2023-08-04T11:55:05,554 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,555 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,555 | ^~~~~~ 2023-08-04T11:55:05,555 | P7_GMX 2023-08-04T11:55:05,557 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,557 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,558 | ^~~~~~ 2023-08-04T11:55:05,558 | P7_GMX 2023-08-04T11:55:05,560 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,561 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,561 | ^~~~~~ 2023-08-04T11:55:05,561 | P7_GMX 2023-08-04T11:55:05,563 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,563 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,564 | ^~~~~~ 2023-08-04T11:55:05,564 | P7_GMX 2023-08-04T11:55:05,564 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2023-08-04T11:55:05,564 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,565 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,565 | ^~~~~ 2023-08-04T11:55:05,567 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,568 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,568 | ^~~~~~~~~~~ 2023-08-04T11:55:05,569 | P7_PROFILE 2023-08-04T11:55:05,570 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,570 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,571 | ^~~~~~ 2023-08-04T11:55:05,572 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,572 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,572 | ^~~~~~~~~~~ 2023-08-04T11:55:05,572 | P7_PROFILE 2023-08-04T11:55:05,573 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,573 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,574 | ^~~~~~ 2023-08-04T11:55:05,574 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,574 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,575 | ^~~~~~ 2023-08-04T11:55:05,575 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,575 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,575 | ^~~~~~ 2023-08-04T11:55:05,576 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,577 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,577 | ^~~~~~~~~~~ 2023-08-04T11:55:05,577 | P7_PROFILE 2023-08-04T11:55:05,578 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,578 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,578 | ^~~~~~~~~~~ 2023-08-04T11:55:05,579 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,579 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,580 | ^~~~~~~~~~~ 2023-08-04T11:55:05,580 | P7_PROFILE 2023-08-04T11:55:05,580 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,581 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,581 | ^~~~~~~~~~~ 2023-08-04T11:55:05,582 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,582 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,582 | ^~~~~~~~~~~ 2023-08-04T11:55:05,582 | P7_PROFILE 2023-08-04T11:55:05,583 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,583 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,583 | ^~~~~~~~~~~ 2023-08-04T11:55:05,583 | P7_PROFILE 2023-08-04T11:55:05,583 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,584 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,584 | ^~~~~~~~~~~ 2023-08-04T11:55:05,584 | P7_PROFILE 2023-08-04T11:55:05,584 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,585 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,585 | ^~~~~~~~~~~ 2023-08-04T11:55:05,585 | P7_PROFILE 2023-08-04T11:55:05,588 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,588 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,589 | ^~~~~~~~~~~ 2023-08-04T11:55:05,589 | P7_PROFILE 2023-08-04T11:55:05,593 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,593 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,594 | ^~~~~~~~~~~ 2023-08-04T11:55:05,594 | P7_PROFILE 2023-08-04T11:55:05,595 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,596 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,596 | ^~~~~~~~~~~ 2023-08-04T11:55:05,600 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,601 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,601 | ^~~~~~~~~~~ 2023-08-04T11:55:05,601 | P7_PROFILE 2023-08-04T11:55:05,611 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2023-08-04T11:55:05,612 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,612 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,612 | ^~~~~~~~~~~ 2023-08-04T11:55:05,612 | P7_PROFILE 2023-08-04T11:55:05,612 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o 2023-08-04T11:55:05,616 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,617 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,617 | ^~~~~~~~~~~ 2023-08-04T11:55:05,617 | P7_PROFILE 2023-08-04T11:55:05,619 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,619 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,620 | ^~~~~~ 2023-08-04T11:55:05,620 | P7_GMX 2023-08-04T11:55:05,623 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,624 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,624 | ^~~~~~ 2023-08-04T11:55:05,624 | P7_GMX 2023-08-04T11:55:05,628 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,628 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,628 | ^~~~~~ 2023-08-04T11:55:05,628 | P7_GMX 2023-08-04T11:55:05,632 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,632 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,633 | ^~~~~~ 2023-08-04T11:55:05,633 | P7_GMX 2023-08-04T11:55:05,637 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,638 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,638 | ^~~~~~~~~~~ 2023-08-04T11:55:05,638 | P7_PROFILE 2023-08-04T11:55:05,642 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,642 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,642 | ^~~~~~~~~~~ 2023-08-04T11:55:05,642 | P7_PROFILE 2023-08-04T11:55:05,646 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,646 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,646 | ^~~~~~~~~~~ 2023-08-04T11:55:05,647 | P7_PROFILE 2023-08-04T11:55:05,648 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,648 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,648 | ^~~~~~~~~~~ 2023-08-04T11:55:05,649 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,650 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,650 | ^~~~~~~~~~~ 2023-08-04T11:55:05,653 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,654 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,654 | ^~~~~~~~~~~ 2023-08-04T11:55:05,654 | P7_PROFILE 2023-08-04T11:55:05,657 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,658 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,658 | ^~~~~~~~~~~ 2023-08-04T11:55:05,658 | P7_PROFILE 2023-08-04T11:55:05,664 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,664 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,664 | ^~~~~~~~~~~ 2023-08-04T11:55:05,665 | P7_PROFILE 2023-08-04T11:55:05,666 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2023-08-04T11:55:05,667 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,667 13 | P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2023-08-04T11:55:05,667 | ^~~~~~~~~~~ 2023-08-04T11:55:05,670 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2023-08-04T11:55:05,671 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,671 55 | P7_OPROFILE *om = NULL; /* target profile */ 2023-08-04T11:55:05,672 | ^~~~~~~~~~~ 2023-08-04T11:55:05,672 | P7_PROFILE 2023-08-04T11:55:05,676 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2023-08-04T11:55:05,677 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,677 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:55:05,677 | ^~~~~~~~~~~ 2023-08-04T11:55:05,677 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:55:05,678 158 | if ( size <= 0 ) { \ 2023-08-04T11:55:05,678 | ^~~~ 2023-08-04T11:55:05,678 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2023-08-04T11:55:05,679 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:55:05,679 | ^~~~~~~~~~~ 2023-08-04T11:55:05,680 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:55:05,680 158 | if ( size <= 0 ) { \ 2023-08-04T11:55:05,680 | ^~~~ 2023-08-04T11:55:05,681 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-08-04T11:55:05,681 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:55:05,681 | ^ 2023-08-04T11:55:05,682 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:55:05,682 158 | if ( size <= 0 ) { \ 2023-08-04T11:55:05,682 | ^~~~ 2023-08-04T11:55:05,683 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-08-04T11:55:05,683 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:55:05,684 | ^ 2023-08-04T11:55:05,684 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:55:05,684 164 | if ( ((p) = malloc(size)) == NULL) { \ 2023-08-04T11:55:05,685 | ^~~~ 2023-08-04T11:55:05,685 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2023-08-04T11:55:05,686 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2023-08-04T11:55:05,686 | ^ 2023-08-04T11:55:05,686 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2023-08-04T11:55:05,687 166 | esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2023-08-04T11:55:05,687 | ^~~~ 2023-08-04T11:55:05,692 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,693 70 | while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2023-08-04T11:55:05,693 | ^~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,693 | p7_profile_Reuse 2023-08-04T11:55:05,699 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,699 72 | if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2023-08-04T11:55:05,700 | ^~~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,700 | p7_profile_Reuse 2023-08-04T11:55:05,704 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,705 91 | if (om) p7_oprofile_Destroy(om); 2023-08-04T11:55:05,705 | ^~~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,705 | p7_profile_Destroy 2023-08-04T11:55:05,708 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2023-08-04T11:55:05,709 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,709 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-08-04T11:55:05,709 | ^~~~~~~~~~~ 2023-08-04T11:55:05,710 | P7_PROFILE 2023-08-04T11:55:05,710 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2023-08-04T11:55:05,710 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2023-08-04T11:55:05,710 | ^ 2023-08-04T11:55:05,711 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,711 110 | for (i = 0; i < cache->n; i++) 2023-08-04T11:55:05,712 | ^ 2023-08-04T11:55:05,715 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2023-08-04T11:55:05,715 111 | n += p7_oprofile_Sizeof(cache->list[i]); 2023-08-04T11:55:05,715 | ^~~~~~~~~~~~~~~~~~ 2023-08-04T11:55:05,716 | p7_profile_Sizeof 2023-08-04T11:55:05,719 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2023-08-04T11:55:05,719 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,720 134 | P7_OPROFILE *om; 2023-08-04T11:55:05,720 | ^~~~~~~~~~~ 2023-08-04T11:55:05,720 | P7_PROFILE 2023-08-04T11:55:05,721 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,721 138 | for (i = 0; i < cache->n; i++) 2023-08-04T11:55:05,722 | ^ 2023-08-04T11:55:05,722 In file included from vendor/hmmer/src/p7_prior.c:11: 2023-08-04T11:55:05,722 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,723 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,723 | ^~~~~ 2023-08-04T11:55:05,723 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,723 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,724 | ^~~~~~ 2023-08-04T11:55:05,724 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,724 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,724 | ^~~~~~ 2023-08-04T11:55:05,725 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,725 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,726 | ^~~~~~ 2023-08-04T11:55:05,726 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,726 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,727 | ^~~~~~ 2023-08-04T11:55:05,727 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2023-08-04T11:55:05,728 141 | if (om->name) free(om->name); 2023-08-04T11:55:05,728 | ^~ 2023-08-04T11:55:05,729 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,729 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,729 | ^~~~~~~~~~~ 2023-08-04T11:55:05,730 | P7_PROFILE 2023-08-04T11:55:05,732 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,732 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,732 | ^~~~~~~~~~~ 2023-08-04T11:55:05,733 | P7_PROFILE 2023-08-04T11:55:05,734 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2023-08-04T11:55:05,735 141 | if (om->name) free(om->name); 2023-08-04T11:55:05,736 | ^~ 2023-08-04T11:55:05,737 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2023-08-04T11:55:05,737 142 | if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2023-08-04T11:55:05,738 | ^~ 2023-08-04T11:55:05,739 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2023-08-04T11:55:05,740 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,740 161 | for (i = 0; i < cache->n; i++) 2023-08-04T11:55:05,741 | ^ 2023-08-04T11:55:05,741 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,743 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,744 | ^~~~~~~~~~~ 2023-08-04T11:55:05,744 | P7_PROFILE 2023-08-04T11:55:05,744 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,744 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,746 | ^~~~~~~~~~~ 2023-08-04T11:55:05,746 | P7_PROFILE 2023-08-04T11:55:05,748 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,748 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,749 | ^~~~~~~~~~~ 2023-08-04T11:55:05,752 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,753 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,753 | ^~~~~~~~~~~ 2023-08-04T11:55:05,753 | P7_PROFILE 2023-08-04T11:55:05,754 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,754 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,754 | ^~~~~~~~~~~ 2023-08-04T11:55:05,755 | P7_PROFILE 2023-08-04T11:55:05,755 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,756 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,756 | ^~~~~~~~~~~ 2023-08-04T11:55:05,756 | P7_PROFILE 2023-08-04T11:55:05,756 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,757 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,757 | ^~~~~~ 2023-08-04T11:55:05,758 | P7_GMX 2023-08-04T11:55:05,758 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,758 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,759 | ^~~~~~ 2023-08-04T11:55:05,759 | P7_GMX 2023-08-04T11:55:05,759 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,759 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,759 | ^~~~~~ 2023-08-04T11:55:05,759 | P7_GMX 2023-08-04T11:55:05,760 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,760 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,760 | ^~~~~~ 2023-08-04T11:55:05,761 | P7_GMX 2023-08-04T11:55:05,764 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,765 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,765 | ^~~~~~~~~~~ 2023-08-04T11:55:05,765 | P7_PROFILE 2023-08-04T11:55:05,766 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,767 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,767 | ^~~~~~~~~~~ 2023-08-04T11:55:05,768 | P7_PROFILE 2023-08-04T11:55:05,769 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,770 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,770 | ^~~~~~~~~~~ 2023-08-04T11:55:05,770 | P7_PROFILE 2023-08-04T11:55:05,770 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,771 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,772 | ^~~~~~~~~~~ 2023-08-04T11:55:05,772 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,772 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,773 | ^~~~~~~~~~~ 2023-08-04T11:55:05,774 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,774 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,775 | ^~~~~~~~~~~ 2023-08-04T11:55:05,775 | P7_PROFILE 2023-08-04T11:55:05,776 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,777 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,777 | ^~~~~~~~~~~ 2023-08-04T11:55:05,777 | P7_PROFILE 2023-08-04T11:55:05,780 In file included from vendor/hmmer/src/p7_trace.c:22: 2023-08-04T11:55:05,780 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,781 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,781 | ^~~~~ 2023-08-04T11:55:05,781 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,782 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,782 | ^~~~~~ 2023-08-04T11:55:05,782 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,782 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,783 | ^~~~~~ 2023-08-04T11:55:05,783 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,783 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,783 | ^~~~~~~~~~~ 2023-08-04T11:55:05,784 | P7_PROFILE 2023-08-04T11:55:05,784 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,785 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,785 | ^~~~~~ 2023-08-04T11:55:05,785 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,785 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,786 | ^~~~~~ 2023-08-04T11:55:05,786 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,787 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,787 | ^~~~~~~~~~~ 2023-08-04T11:55:05,787 | P7_PROFILE 2023-08-04T11:55:05,789 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,789 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,790 | ^~~~~~~~~~~ 2023-08-04T11:55:05,790 | P7_PROFILE 2023-08-04T11:55:05,792 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,795 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,796 | ^~~~~~~~~~~ 2023-08-04T11:55:05,796 | P7_PROFILE 2023-08-04T11:55:05,796 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,797 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,797 | ^~~~~~~~~~~ 2023-08-04T11:55:05,798 | P7_PROFILE 2023-08-04T11:55:05,800 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,800 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,801 | ^~~~~~~~~~~ 2023-08-04T11:55:05,803 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,804 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,805 | ^~~~~~~~~~~ 2023-08-04T11:55:05,805 | P7_PROFILE 2023-08-04T11:55:05,807 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,807 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,807 | ^~~~~~~~~~~ 2023-08-04T11:55:05,808 | P7_PROFILE 2023-08-04T11:55:05,810 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,811 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,811 | ^~~~~~~~~~~ 2023-08-04T11:55:05,811 | P7_PROFILE 2023-08-04T11:55:05,813 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,813 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,814 | ^~~~~~ 2023-08-04T11:55:05,814 | P7_GMX 2023-08-04T11:55:05,815 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,816 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,816 | ^~~~~~ 2023-08-04T11:55:05,816 | P7_GMX 2023-08-04T11:55:05,818 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,818 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,819 | ^~~~~~ 2023-08-04T11:55:05,819 | P7_GMX 2023-08-04T11:55:05,820 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,820 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,821 | ^~~~~~ 2023-08-04T11:55:05,821 | P7_GMX 2023-08-04T11:55:05,824 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,825 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,825 | ^~~~~~~~~~~ 2023-08-04T11:55:05,826 | P7_PROFILE 2023-08-04T11:55:05,827 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,828 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,828 | ^~~~~~~~~~~ 2023-08-04T11:55:05,828 | P7_PROFILE 2023-08-04T11:55:05,831 In file included from vendor/hmmer/src/fm_general.c:14: 2023-08-04T11:55:05,832 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2023-08-04T11:55:05,832 829 | #error "No vector implementation enabled" 2023-08-04T11:55:05,832 | ^~~~~ 2023-08-04T11:55:05,832 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,832 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,832 | ^~~~~~~~~~~ 2023-08-04T11:55:05,833 | P7_PROFILE 2023-08-04T11:55:05,833 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,833 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,834 | ^~~~~~~~~~~ 2023-08-04T11:55:05,834 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,834 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2023-08-04T11:55:05,834 | ^~~~~~ 2023-08-04T11:55:05,834 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,835 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2023-08-04T11:55:05,835 | ^~~~~~ 2023-08-04T11:55:05,835 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,836 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,836 | ^~~~~~~~~~~ 2023-08-04T11:55:05,837 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,837 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2023-08-04T11:55:05,837 | ^~~~~~ 2023-08-04T11:55:05,837 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2023-08-04T11:55:05,838 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2023-08-04T11:55:05,838 | ^~~~~~ 2023-08-04T11:55:05,838 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,838 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,838 | ^~~~~~~~~~~ 2023-08-04T11:55:05,839 | P7_PROFILE 2023-08-04T11:55:05,839 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,839 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2023-08-04T11:55:05,839 | ^~~~~~~~~~~ 2023-08-04T11:55:05,839 | P7_PROFILE 2023-08-04T11:55:05,840 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,840 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,840 | ^~~~~~~~~~~ 2023-08-04T11:55:05,840 | P7_PROFILE 2023-08-04T11:55:05,841 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,841 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2023-08-04T11:55:05,841 | ^~~~~~~~~~~ 2023-08-04T11:55:05,842 | P7_PROFILE 2023-08-04T11:55:05,842 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,843 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2023-08-04T11:55:05,843 | ^~~~~~~~~~~ 2023-08-04T11:55:05,843 | P7_PROFILE 2023-08-04T11:55:05,844 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,844 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2023-08-04T11:55:05,844 | ^~~~~~~~~~~ 2023-08-04T11:55:05,844 | P7_PROFILE 2023-08-04T11:55:05,845 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,845 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,845 | ^~~~~~~~~~~ 2023-08-04T11:55:05,845 | P7_PROFILE 2023-08-04T11:55:05,846 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,846 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2023-08-04T11:55:05,847 | ^~~~~~~~~~~ 2023-08-04T11:55:05,849 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,850 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-04T11:55:05,850 | ^~~~~~~~~~~ 2023-08-04T11:55:05,850 | P7_PROFILE 2023-08-04T11:55:05,852 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,852 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-04T11:55:05,853 | ^~~~~~~~~~~ 2023-08-04T11:55:05,853 | P7_PROFILE 2023-08-04T11:55:05,855 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,855 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,856 | ^~~~~~~~~~~ 2023-08-04T11:55:05,856 | P7_PROFILE 2023-08-04T11:55:05,857 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,858 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,858 | ^~~~~~ 2023-08-04T11:55:05,858 | P7_GMX 2023-08-04T11:55:05,860 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,860 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,861 | ^~~~~~ 2023-08-04T11:55:05,861 | P7_GMX 2023-08-04T11:55:05,862 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,863 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,863 | ^~~~~~ 2023-08-04T11:55:05,863 | P7_GMX 2023-08-04T11:55:05,864 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2023-08-04T11:55:05,865 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2023-08-04T11:55:05,865 | ^~~~~~ 2023-08-04T11:55:05,865 | P7_GMX 2023-08-04T11:55:05,868 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,869 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-04T11:55:05,869 | ^~~~~~~~~~~ 2023-08-04T11:55:05,869 | P7_PROFILE 2023-08-04T11:55:05,871 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,871 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2023-08-04T11:55:05,872 | ^~~~~~~~~~~ 2023-08-04T11:55:05,872 | P7_PROFILE 2023-08-04T11:55:05,873 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,874 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2023-08-04T11:55:05,874 | ^~~~~~~~~~~ 2023-08-04T11:55:05,874 | P7_PROFILE 2023-08-04T11:55:05,874 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,874 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-04T11:55:05,875 | ^~~~~~~~~~~ 2023-08-04T11:55:05,875 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2023-08-04T11:55:05,876 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2023-08-04T11:55:05,876 | ^~~~~~~~~~~ 2023-08-04T11:55:05,877 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,878 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-04T11:55:05,878 | ^~~~~~~~~~~ 2023-08-04T11:55:05,878 | P7_PROFILE 2023-08-04T11:55:05,880 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,880 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-04T11:55:05,880 | ^~~~~~~~~~~ 2023-08-04T11:55:05,881 | P7_PROFILE 2023-08-04T11:55:05,885 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2023-08-04T11:55:05,885 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2023-08-04T11:55:05,885 | ^~~~~~~~~~~ 2023-08-04T11:55:05,885 | P7_PROFILE 2023-08-04T11:55:05,889 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2023-08-04T11:55:05,889 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,890 292 | if (ranges[lo].lower > end) return -1; 2023-08-04T11:55:05,890 | ^ 2023-08-04T11:55:05,890 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,890 293 | if (ranges[hi].upper < start) return -1; 2023-08-04T11:55:05,890 | ^ 2023-08-04T11:55:05,891 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,891 297 | if (ranges[mid].lower < start) lo = mid + 1; // too far left 2023-08-04T11:55:05,891 | ^ 2023-08-04T11:55:05,891 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,891 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-08-04T11:55:05,892 | ^~ 2023-08-04T11:55:05,892 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,892 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-08-04T11:55:05,892 | ^~ 2023-08-04T11:55:05,892 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,892 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-08-04T11:55:05,893 | ^~ 2023-08-04T11:55:05,893 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,893 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-08-04T11:55:05,893 | ^~ 2023-08-04T11:55:05,893 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2023-08-04T11:55:05,893 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-08-04T11:55:05,894 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-08-04T11:55:05,894 | ^~ 2023-08-04T11:55:05,894 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,894 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-08-04T11:55:05,894 | ^~ 2023-08-04T11:55:05,894 In file included from vendor/hmmer/src/fm_general.c:12: 2023-08-04T11:55:05,894 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:05,895 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:55:05,895 | ^ 2023-08-04T11:55:05,895 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:55:05,895 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-08-04T11:55:05,895 | ^~~~~~~ 2023-08-04T11:55:05,895 vendor/easel/easel.h:417:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:55:05,896 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-04T11:55:05,896 | ^~~ 2023-08-04T11:55:05,896 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-08-04T11:55:05,896 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-08-04T11:55:05,896 | ^~~~~~~ 2023-08-04T11:55:05,896 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:05,897 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-04T11:55:05,897 | ^ 2023-08-04T11:55:05,897 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-08-04T11:55:05,897 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-08-04T11:55:05,897 | ^~~~~~~ 2023-08-04T11:55:05,897 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-04T11:55:05,898 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-04T11:55:05,898 | ^~~ 2023-08-04T11:55:05,898 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-08-04T11:55:05,900 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-08-04T11:55:05,900 | ^~~~~~~ 2023-08-04T11:55:05,901 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:05,901 353 | for (j= start; j<=end; j++) 2023-08-04T11:55:05,901 | ^~ 2023-08-04T11:55:05,902 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2023-08-04T11:55:05,902 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-08-04T11:55:05,902 537 | (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-08-04T11:55:05,902 | ^~ 2023-08-04T11:55:05,903 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-08-04T11:55:05,903 538 | (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-08-04T11:55:05,903 | ^~ 2023-08-04T11:55:05,905 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2023-08-04T11:55:05,905 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,905 620 | for (i=0; iseq_count; i++) { 2023-08-04T11:55:05,905 | ^ 2023-08-04T11:55:05,908 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:05,908 638 | fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2023-08-04T11:55:05,908 | ^~ 2023-08-04T11:55:05,908 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:05,909 639 | fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2023-08-04T11:55:05,909 | ^~ 2023-08-04T11:55:05,909 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:05,909 640 | fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2023-08-04T11:55:05,909 | ^~ 2023-08-04T11:55:05,910 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-04T11:55:05,910 641 | fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2023-08-04T11:55:05,910 | ^~ 2023-08-04T11:55:05,910 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,910 651 | for (i=0; iambig_list->count; i++) { 2023-08-04T11:55:05,911 | ^ 2023-08-04T11:55:05,911 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,911 663 | for (i=0; iseq_count; i++) 2023-08-04T11:55:05,911 | ^ 2023-08-04T11:55:05,912 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2023-08-04T11:55:05,913 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-04T11:55:05,913 727 | for (i=0; iseq_count; i++) { 2023-08-04T11:55:05,913 | ^ 2023-08-04T11:55:05,939 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-08-04T11:55:06,042 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2023-08-04T11:55:06,059 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpb4n3qttq[/] 2023-08-04T11:55:06,059 [bold magenta]cwd[/]: /tmp/pip-wheel-29a4wu3w/pyhmmer_807a122d055c4f5c8823533d5021e745 2023-08-04T11:55:06,059 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2023-08-04T11:55:06,062 ERROR: Failed building wheel for pyhmmer 2023-08-04T11:55:06,064 Failed to build pyhmmer 2023-08-04T11:55:06,065 ERROR: Failed to build one or more wheels 2023-08-04T11:55:06,066 Exception information: 2023-08-04T11:55:06,066 Traceback (most recent call last): 2023-08-04T11:55:06,066 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-08-04T11:55:06,066 status = run_func(*args) 2023-08-04T11:55:06,066 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-08-04T11:55:06,066 return func(self, options, args) 2023-08-04T11:55:06,066 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-08-04T11:55:06,066 raise CommandError("Failed to build one or more wheels") 2023-08-04T11:55:06,066 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-08-04T11:55:06,069 Removed build tracker: '/tmp/pip-build-tracker-9ubne2fu'