2023-08-08T09:59:44,927 Created temporary directory: /tmp/pip-build-tracker-pdsriuwv 2023-08-08T09:59:44,928 Initialized build tracking at /tmp/pip-build-tracker-pdsriuwv 2023-08-08T09:59:44,929 Created build tracker: /tmp/pip-build-tracker-pdsriuwv 2023-08-08T09:59:44,929 Entered build tracker: /tmp/pip-build-tracker-pdsriuwv 2023-08-08T09:59:44,930 Created temporary directory: /tmp/pip-wheel-91u7jiag 2023-08-08T09:59:44,933 Created temporary directory: /tmp/pip-ephem-wheel-cache-z6mamaw3 2023-08-08T09:59:44,956 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-08T09:59:44,959 2 location(s) to search for versions of pybiotk: 2023-08-08T09:59:44,959 * https://pypi.org/simple/pybiotk/ 2023-08-08T09:59:44,959 * https://www.piwheels.org/simple/pybiotk/ 2023-08-08T09:59:44,960 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/ 2023-08-08T09:59:44,960 Getting page https://pypi.org/simple/pybiotk/ 2023-08-08T09:59:44,962 Found index url https://pypi.org/simple/ 2023-08-08T09:59:45,012 Fetched page https://pypi.org/simple/pybiotk/ as application/vnd.pypi.simple.v1+json 2023-08-08T09:59:45,014 Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.3 2023-08-08T09:59:45,015 Found link https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.4 2023-08-08T09:59:45,015 Found link https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.6 2023-08-08T09:59:45,015 Found link https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.7 2023-08-08T09:59:45,016 Found link https://files.pythonhosted.org/packages/b7/60/f27ad0c199d09158de9f172415057312c69a824f3589e43787ea24925448/pybiotk-1.0.8.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.8 2023-08-08T09:59:45,016 Found link https://files.pythonhosted.org/packages/fb/74/d26be594d8fc95a6bf87a98c26341ec248f2bb6fe50fa7a78419c8a152d9/pybiotk-1.0.9.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.9 2023-08-08T09:59:45,016 Found link https://files.pythonhosted.org/packages/23/04/fd2a2b3b3177b01265b141db5e1cd962f2e7d435a3cafb23631c2f22076c/pybiotk-1.1.0.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.1.0 2023-08-08T09:59:45,017 Found link https://files.pythonhosted.org/packages/01/7b/9e6f646c28b48a6ef9a434a1b8169c7ec6b8ee8e5ce135c6aa60284ddb84/pybiotk-1.1.1.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.1.1 2023-08-08T09:59:45,017 Found link https://files.pythonhosted.org/packages/f7/2d/b38d75abba8592955a86e4d86c64229b02b37582049427c21925443b1807/pybiotk-1.2.0.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.0 2023-08-08T09:59:45,017 Found link https://files.pythonhosted.org/packages/d3/45/4f60c095cbd938d73427d73089a67014adb3f91d0b4f5b0e52a815bd550e/pybiotk-1.2.1.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.1 2023-08-08T09:59:45,017 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/ 2023-08-08T09:59:45,018 Getting page https://www.piwheels.org/simple/pybiotk/ 2023-08-08T09:59:45,019 Found index url https://www.piwheels.org/simple/ 2023-08-08T09:59:45,175 Fetched page https://www.piwheels.org/simple/pybiotk/ as text/html 2023-08-08T09:59:45,186 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=62b6a1dac642a77187c5a163b17eefccf75b54ec85a4d6622363bb7814f1a565 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,186 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=62b6a1dac642a77187c5a163b17eefccf75b54ec85a4d6622363bb7814f1a565 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,186 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=b554bf72c5b0bffe6c1e9a74088314014bb813c6d1d9b6578745e246a0d45687 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,187 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=b554bf72c5b0bffe6c1e9a74088314014bb813c6d1d9b6578745e246a0d45687 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,187 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=9cb3556385c015ece339379fcda2d3dd46022b80c852672e839e31e0a308951e (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,187 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=9cb3556385c015ece339379fcda2d3dd46022b80c852672e839e31e0a308951e (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,187 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.1-cp39-cp39-linux_armv7l.whl#sha256=04ce4e8c36dacd8f0a727f6acb1cf990b425d3fcd6e1bc426bca2c316de0bcc8 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,187 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.1-cp39-cp39-linux_armv6l.whl#sha256=04ce4e8c36dacd8f0a727f6acb1cf990b425d3fcd6e1bc426bca2c316de0bcc8 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,188 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=f57da780847a57155b44aa2f7a6e328d345a0f30858083c6669c328b44f194a1 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,188 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=f57da780847a57155b44aa2f7a6e328d345a0f30858083c6669c328b44f194a1 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,188 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=be8faf4c7b17f96a91c7104a7b5d093ce07c4e6ebd458f4501694a0a42c89881 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,188 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=be8faf4c7b17f96a91c7104a7b5d093ce07c4e6ebd458f4501694a0a42c89881 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,188 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=fefc94e675065b00c116d2c61c64d178a20bee1079be65fa097b8f134fee5299 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,189 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=fefc94e675065b00c116d2c61c64d178a20bee1079be65fa097b8f134fee5299 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,189 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp39-cp39-linux_armv7l.whl#sha256=0b05bf968d17d6ee92be8bf21cf3991df7cb3b3d685fee09049dedb2f9d5ee7c (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,189 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp39-cp39-linux_armv6l.whl#sha256=0b05bf968d17d6ee92be8bf21cf3991df7cb3b3d685fee09049dedb2f9d5ee7c (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,189 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp37-cp37m-linux_armv7l.whl#sha256=be124f7f80c27462ab252101b8748b4825aa2718172dd154380e23d7f2dcb954 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,189 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.9-cp37-cp37m-linux_armv6l.whl#sha256=be124f7f80c27462ab252101b8748b4825aa2718172dd154380e23d7f2dcb954 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,190 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp39-cp39-linux_armv7l.whl#sha256=16889f2c9c5397540b9fa3bfa0396accff8dce33315140eb793f9bedb013c4ad (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,190 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp39-cp39-linux_armv6l.whl#sha256=16889f2c9c5397540b9fa3bfa0396accff8dce33315140eb793f9bedb013c4ad (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,190 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp37-cp37m-linux_armv7l.whl#sha256=ad3883b734204bdb7f690aa520d991f61667159590a41a71870dda41d888085d (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,190 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.8-cp37-cp37m-linux_armv6l.whl#sha256=ad3883b734204bdb7f690aa520d991f61667159590a41a71870dda41d888085d (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,190 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,191 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=58efd8944f51edd73913001082ed31919eaa2a61cd84bab7f9b3d6dc4bb5147c (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,191 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv7l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,191 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.7-cp37-cp37m-linux_armv6l.whl#sha256=b3374922018f96941d783f8fbd1419523636af0939729833084abfcbc2857815 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,191 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,191 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=3ca3fc7f0e19a74789369a1ab6ee666b4658db1d6547739760037140b35b7e3e (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,191 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv7l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,192 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.6-cp37-cp37m-linux_armv6l.whl#sha256=c2c24578a8c96d074c91314ee034316b005ad82fe94da2f2135b6cca4237b374 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,192 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,192 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,192 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,192 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,193 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,193 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,193 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,193 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/) 2023-08-08T09:59:45,193 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/ 2023-08-08T09:59:45,194 Skipping link: not a file: https://pypi.org/simple/pybiotk/ 2023-08-08T09:59:45,213 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates 2023-08-08T09:59:45,230 Collecting pybiotk==1.2.1 2023-08-08T09:59:45,232 Created temporary directory: /tmp/pip-unpack-dmhg7m0i 2023-08-08T09:59:45,277 Downloading pybiotk-1.2.1.tar.gz (99 kB) 2023-08-08T09:59:45,551 Added pybiotk==1.2.1 from https://files.pythonhosted.org/packages/d3/45/4f60c095cbd938d73427d73089a67014adb3f91d0b4f5b0e52a815bd550e/pybiotk-1.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-pdsriuwv' 2023-08-08T09:59:45,559 Created temporary directory: /tmp/pip-build-env-pg_e5v_p 2023-08-08T09:59:45,569 Installing build dependencies: started 2023-08-08T09:59:45,570 Running command pip subprocess to install build dependencies 2023-08-08T09:59:46,766 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-08-08T09:59:47,131 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-08T09:59:48,784 Collecting setuptools>=46.1.0 2023-08-08T09:59:48,851 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-08-08T09:59:49,194 Collecting setuptools_scm[toml]>=5 2023-08-08T09:59:49,211 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB) 2023-08-08T09:59:49,439 Collecting wheel 2023-08-08T09:59:49,456 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.1-py3-none-any.whl (64 kB) 2023-08-08T09:59:51,019 Collecting Cython<3.0.0,>=0.29.30 2023-08-08T09:59:51,405 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.36-cp39-cp39-linux_armv7l.whl (4.9 MB) 2023-08-08T09:59:51,890 Collecting packaging>=20.0 (from setuptools_scm[toml]>=5) 2023-08-08T09:59:51,906 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-08-08T09:59:52,035 Collecting typing-extensions (from setuptools_scm[toml]>=5) 2023-08-08T09:59:52,051 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.7.1-py3-none-any.whl (33 kB) 2023-08-08T09:59:52,167 Collecting tomli>=1.0.0 (from setuptools_scm[toml]>=5) 2023-08-08T09:59:52,183 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2023-08-08T09:59:54,334 Installing collected packages: wheel, typing-extensions, tomli, setuptools, packaging, Cython, setuptools_scm 2023-08-08T09:59:54,548 Creating /tmp/pip-build-env-pg_e5v_p/overlay/bin 2023-08-08T09:59:54,551 changing mode of /tmp/pip-build-env-pg_e5v_p/overlay/bin/wheel to 755 2023-08-08T09:59:59,633 changing mode of /tmp/pip-build-env-pg_e5v_p/overlay/bin/cygdb to 755 2023-08-08T09:59:59,635 changing mode of /tmp/pip-build-env-pg_e5v_p/overlay/bin/cython to 755 2023-08-08T09:59:59,638 changing mode of /tmp/pip-build-env-pg_e5v_p/overlay/bin/cythonize to 755 2023-08-08T09:59:59,837 Successfully installed Cython-0.29.36 packaging-23.1 setuptools-68.0.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.7.1 wheel-0.41.1 2023-08-08T09:59:59,852 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-08T09:59:59,852 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-08T10:00:00,195 Installing build dependencies: finished with status 'done' 2023-08-08T10:00:00,200 Getting requirements to build wheel: started 2023-08-08T10:00:00,201 Running command Getting requirements to build wheel 2023-08-08T10:00:02,701 Compiling src/bx/bitset.pyx because it changed. 2023-08-08T10:00:02,701 Compiling src/bx/cluster.pyx because it changed. 2023-08-08T10:00:02,701 Compiling src/bx/intersection.pyx because it changed. 2023-08-08T10:00:02,701 [1/3] Cythonizing src/bx/bitset.pyx 2023-08-08T10:00:02,702 [2/3] Cythonizing src/bx/cluster.pyx 2023-08-08T10:00:02,702 [3/3] Cythonizing src/bx/intersection.pyx 2023-08-08T10:00:02,989 running egg_info 2023-08-08T10:00:02,997 writing src/pybiotk.egg-info/PKG-INFO 2023-08-08T10:00:02,999 writing dependency_links to src/pybiotk.egg-info/dependency_links.txt 2023-08-08T10:00:03,002 writing entry points to src/pybiotk.egg-info/entry_points.txt 2023-08-08T10:00:03,004 writing requirements to src/pybiotk.egg-info/requires.txt 2023-08-08T10:00:03,006 writing top-level names to src/pybiotk.egg-info/top_level.txt 2023-08-08T10:00:03,082 listing git files failed - pretending there aren't any 2023-08-08T10:00:03,091 reading manifest file 'src/pybiotk.egg-info/SOURCES.txt' 2023-08-08T10:00:03,097 adding license file 'LICENSE.txt' 2023-08-08T10:00:03,105 writing manifest file 'src/pybiotk.egg-info/SOURCES.txt' 2023-08-08T10:00:03,277 Getting requirements to build wheel: finished with status 'done' 2023-08-08T10:00:03,287 Created temporary directory: /tmp/pip-modern-metadata-3s0jnz4t 2023-08-08T10:00:03,290 Preparing metadata (pyproject.toml): started 2023-08-08T10:00:03,291 Running command Preparing metadata (pyproject.toml) 2023-08-08T10:00:04,586 running dist_info 2023-08-08T10:00:04,605 creating /tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info 2023-08-08T10:00:04,611 writing /tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info/PKG-INFO 2023-08-08T10:00:04,614 writing dependency_links to /tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info/dependency_links.txt 2023-08-08T10:00:04,616 writing entry points to /tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info/entry_points.txt 2023-08-08T10:00:04,618 writing requirements to /tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info/requires.txt 2023-08-08T10:00:04,619 writing top-level names to /tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info/top_level.txt 2023-08-08T10:00:04,620 writing manifest file '/tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info/SOURCES.txt' 2023-08-08T10:00:04,688 listing git files failed - pretending there aren't any 2023-08-08T10:00:04,696 reading manifest file '/tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info/SOURCES.txt' 2023-08-08T10:00:04,699 adding license file 'LICENSE.txt' 2023-08-08T10:00:04,704 writing manifest file '/tmp/pip-modern-metadata-3s0jnz4t/pybiotk.egg-info/SOURCES.txt' 2023-08-08T10:00:04,705 creating '/tmp/pip-modern-metadata-3s0jnz4t/pybiotk-1.2.1.dist-info' 2023-08-08T10:00:04,924 Preparing metadata (pyproject.toml): finished with status 'done' 2023-08-08T10:00:04,930 Source in /tmp/pip-wheel-91u7jiag/pybiotk_b9cddc1a2b9b485faedd8142c76c3978 has version 1.2.1, which satisfies requirement pybiotk==1.2.1 from https://files.pythonhosted.org/packages/d3/45/4f60c095cbd938d73427d73089a67014adb3f91d0b4f5b0e52a815bd550e/pybiotk-1.2.1.tar.gz 2023-08-08T10:00:04,931 Removed pybiotk==1.2.1 from https://files.pythonhosted.org/packages/d3/45/4f60c095cbd938d73427d73089a67014adb3f91d0b4f5b0e52a815bd550e/pybiotk-1.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-pdsriuwv' 2023-08-08T10:00:04,935 Created temporary directory: /tmp/pip-unpack-w0azl650 2023-08-08T10:00:04,936 Building wheels for collected packages: pybiotk 2023-08-08T10:00:04,940 Created temporary directory: /tmp/pip-wheel-2w6jaeq1 2023-08-08T10:00:04,940 Destination directory: /tmp/pip-wheel-2w6jaeq1 2023-08-08T10:00:04,943 Building wheel for pybiotk (pyproject.toml): started 2023-08-08T10:00:04,944 Running command Building wheel for pybiotk (pyproject.toml) 2023-08-08T10:00:06,254 running bdist_wheel 2023-08-08T10:00:06,295 running build 2023-08-08T10:00:06,295 running build_py 2023-08-08T10:00:06,305 creating build/lib.linux-armv7l-cpython-39 2023-08-08T10:00:06,305 creating build/lib.linux-armv7l-cpython-39/stream 2023-08-08T10:00:06,306 copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream 2023-08-08T10:00:06,309 copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream 2023-08-08T10:00:06,310 copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream 2023-08-08T10:00:06,313 creating build/lib.linux-armv7l-cpython-39/pybiotk 2023-08-08T10:00:06,314 copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk 2023-08-08T10:00:06,316 creating build/lib.linux-armv7l-cpython-39/pybiotk/convert 2023-08-08T10:00:06,317 copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2023-08-08T10:00:06,318 copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2023-08-08T10:00:06,320 copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2023-08-08T10:00:06,322 copying src/pybiotk/convert/fa2fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2023-08-08T10:00:06,323 copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2023-08-08T10:00:06,325 copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2023-08-08T10:00:06,327 copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2023-08-08T10:00:06,329 creating build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,330 copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,332 copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,334 copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,336 copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,338 copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,340 copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,342 copying src/pybiotk/utils/reverse_fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,343 copying src/pybiotk/utils/genomefetcher.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,346 copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,347 copying src/pybiotk/utils/fastx_rename.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,349 copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,350 copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,353 copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,355 copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,356 copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,358 copying src/pybiotk/utils/fastq_join.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,360 copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,362 copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,363 copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,365 copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,367 copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2023-08-08T10:00:06,370 creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2023-08-08T10:00:06,370 copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2023-08-08T10:00:06,373 copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2023-08-08T10:00:06,375 copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2023-08-08T10:00:06,377 copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2023-08-08T10:00:06,378 copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2023-08-08T10:00:06,381 creating build/lib.linux-armv7l-cpython-39/pybiotk/data 2023-08-08T10:00:06,382 copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data 2023-08-08T10:00:06,384 creating build/lib.linux-armv7l-cpython-39/pybiotk/io 2023-08-08T10:00:06,385 copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2023-08-08T10:00:06,387 copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2023-08-08T10:00:06,389 copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2023-08-08T10:00:06,391 copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2023-08-08T10:00:06,393 copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2023-08-08T10:00:06,395 copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2023-08-08T10:00:06,397 copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2023-08-08T10:00:06,399 creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2023-08-08T10:00:06,400 copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2023-08-08T10:00:06,402 copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2023-08-08T10:00:06,404 copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2023-08-08T10:00:06,405 copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2023-08-08T10:00:06,408 creating build/lib.linux-armv7l-cpython-39/pybiotk/string 2023-08-08T10:00:06,409 copying src/pybiotk/string/motif.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string 2023-08-08T10:00:06,411 copying src/pybiotk/string/sequence.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string 2023-08-08T10:00:06,412 copying src/pybiotk/string/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string 2023-08-08T10:00:06,414 running egg_info 2023-08-08T10:00:06,422 writing src/pybiotk.egg-info/PKG-INFO 2023-08-08T10:00:06,423 writing dependency_links to src/pybiotk.egg-info/dependency_links.txt 2023-08-08T10:00:06,426 writing entry points to src/pybiotk.egg-info/entry_points.txt 2023-08-08T10:00:06,428 writing requirements to src/pybiotk.egg-info/requires.txt 2023-08-08T10:00:06,429 writing top-level names to src/pybiotk.egg-info/top_level.txt 2023-08-08T10:00:06,468 listing git files failed - pretending there aren't any 2023-08-08T10:00:06,476 reading manifest file 'src/pybiotk.egg-info/SOURCES.txt' 2023-08-08T10:00:06,481 adding license file 'LICENSE.txt' 2023-08-08T10:00:06,488 writing manifest file 'src/pybiotk.egg-info/SOURCES.txt' 2023-08-08T10:00:06,493 copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data 2023-08-08T10:00:06,496 copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data 2023-08-08T10:00:06,503 running build_ext 2023-08-08T10:00:06,509 building 'pybiotk.bx.bitset' extension 2023-08-08T10:00:06,510 creating build/temp.linux-armv7l-cpython-39 2023-08-08T10:00:06,510 creating build/temp.linux-armv7l-cpython-39/build 2023-08-08T10:00:06,511 creating build/temp.linux-armv7l-cpython-39/build/src 2023-08-08T10:00:06,512 creating build/temp.linux-armv7l-cpython-39/build/src/bx 2023-08-08T10:00:06,513 creating build/temp.linux-armv7l-cpython-39/src 2023-08-08T10:00:06,513 creating build/temp.linux-armv7l-cpython-39/src/bx 2023-08-08T10:00:06,514 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o 2023-08-08T10:00:11,982 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o 2023-08-08T10:00:12,363 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o 2023-08-08T10:00:12,780 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o 2023-08-08T10:00:12,954 creating build/lib.linux-armv7l-cpython-39/pybiotk/bx 2023-08-08T10:00:12,954 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so 2023-08-08T10:00:13,081 building 'pybiotk.bx.cluster' extension 2023-08-08T10:00:13,082 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o 2023-08-08T10:00:15,141 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o 2023-08-08T10:00:15,644 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so 2023-08-08T10:00:15,748 building 'pybiotk.bx.intersection' extension 2023-08-08T10:00:15,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o 2023-08-08T10:00:24,586 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so 2023-08-08T10:00:24,707 running build_scripts 2023-08-08T10:00:24,708 creating build/scripts-3.9 2023-08-08T10:00:24,709 copying rscripts/plot_venn.R -> build/scripts-3.9 2023-08-08T10:00:24,711 copying rscripts/plot_corr.R -> build/scripts-3.9 2023-08-08T10:00:24,713 copying rscripts/plot_FRiPs.R -> build/scripts-3.9 2023-08-08T10:00:24,715 copying rscripts/diff_expr_plot.R -> build/scripts-3.9 2023-08-08T10:00:24,718 copying rscripts/peak_anno.R -> build/scripts-3.9 2023-08-08T10:00:24,720 copying rscripts/plot_peak_width.R -> build/scripts-3.9 2023-08-08T10:00:24,722 copying rscripts/plot_chip_summary.R -> build/scripts-3.9 2023-08-08T10:00:24,724 copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9 2023-08-08T10:00:24,726 copying rscripts/plot_rep_cor.R -> build/scripts-3.9 2023-08-08T10:00:24,728 copying rscripts/plot_bar.R -> build/scripts-3.9 2023-08-08T10:00:24,730 copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9 2023-08-08T10:00:24,733 copying rscripts/plot_hist.R -> build/scripts-3.9 2023-08-08T10:00:24,735 copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9 2023-08-08T10:00:24,737 copying scripts/gtfparser.sh -> build/scripts-3.9 2023-08-08T10:00:24,739 copying scripts/fastq_len.sh -> build/scripts-3.9 2023-08-08T10:00:24,742 copying scripts/fasta_u2t.sh -> build/scripts-3.9 2023-08-08T10:00:24,744 copying scripts/get_chrom_length.sh -> build/scripts-3.9 2023-08-08T10:00:24,746 copying scripts/remove_duplicates.sh -> build/scripts-3.9 2023-08-08T10:00:24,748 copying scripts/fasta_len.sh -> build/scripts-3.9 2023-08-08T10:00:24,750 copying scripts/merge_subseq.sh -> build/scripts-3.9 2023-08-08T10:00:24,752 changing mode of build/scripts-3.9/plot_venn.R from 644 to 755 2023-08-08T10:00:24,753 changing mode of build/scripts-3.9/plot_corr.R from 644 to 755 2023-08-08T10:00:24,753 changing mode of build/scripts-3.9/plot_FRiPs.R from 644 to 755 2023-08-08T10:00:24,754 changing mode of build/scripts-3.9/diff_expr_plot.R from 644 to 755 2023-08-08T10:00:24,754 changing mode of build/scripts-3.9/peak_anno.R from 644 to 755 2023-08-08T10:00:24,755 changing mode of build/scripts-3.9/plot_peak_width.R from 644 to 755 2023-08-08T10:00:24,756 changing mode of build/scripts-3.9/plot_chip_summary.R from 644 to 755 2023-08-08T10:00:24,756 changing mode of build/scripts-3.9/plot_deeptools_fragmentsize.R from 644 to 755 2023-08-08T10:00:24,757 changing mode of build/scripts-3.9/plot_rep_cor.R from 644 to 755 2023-08-08T10:00:24,757 changing mode of build/scripts-3.9/plot_bar.R from 644 to 755 2023-08-08T10:00:24,758 changing mode of build/scripts-3.9/diff_expr_edgeR.R from 644 to 755 2023-08-08T10:00:24,759 changing mode of build/scripts-3.9/plot_hist.R from 644 to 755 2023-08-08T10:00:24,759 changing mode of build/scripts-3.9/diff_expr_DESeq2.R from 644 to 755 2023-08-08T10:00:24,760 changing mode of build/scripts-3.9/gtfparser.sh from 644 to 755 2023-08-08T10:00:24,760 changing mode of build/scripts-3.9/fastq_len.sh from 644 to 755 2023-08-08T10:00:24,761 changing mode of build/scripts-3.9/fasta_u2t.sh from 644 to 755 2023-08-08T10:00:24,762 changing mode of build/scripts-3.9/get_chrom_length.sh from 644 to 755 2023-08-08T10:00:24,762 changing mode of build/scripts-3.9/remove_duplicates.sh from 644 to 755 2023-08-08T10:00:24,763 changing mode of build/scripts-3.9/fasta_len.sh from 644 to 755 2023-08-08T10:00:24,763 changing mode of build/scripts-3.9/merge_subseq.sh from 644 to 755 2023-08-08T10:00:24,785 installing to build/bdist.linux-armv7l/wheel 2023-08-08T10:00:24,785 running install 2023-08-08T10:00:24,811 running install_lib 2023-08-08T10:00:24,820 creating build/bdist.linux-armv7l 2023-08-08T10:00:24,821 creating build/bdist.linux-armv7l/wheel 2023-08-08T10:00:24,823 creating build/bdist.linux-armv7l/wheel/stream 2023-08-08T10:00:24,824 copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream 2023-08-08T10:00:24,826 copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream 2023-08-08T10:00:24,828 copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream 2023-08-08T10:00:24,831 creating build/bdist.linux-armv7l/wheel/pybiotk 2023-08-08T10:00:24,833 creating build/bdist.linux-armv7l/wheel/pybiotk/convert 2023-08-08T10:00:24,834 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2023-08-08T10:00:24,836 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2023-08-08T10:00:24,838 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2023-08-08T10:00:24,840 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fa2fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2023-08-08T10:00:24,842 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2023-08-08T10:00:24,845 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2023-08-08T10:00:24,847 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2023-08-08T10:00:24,849 creating build/bdist.linux-armv7l/wheel/pybiotk/bx 2023-08-08T10:00:24,850 copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx 2023-08-08T10:00:24,867 copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx 2023-08-08T10:00:24,873 copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx 2023-08-08T10:00:24,886 creating build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,887 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,890 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,892 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,894 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,896 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,898 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,901 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reverse_fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,903 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/genomefetcher.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,906 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,908 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastx_rename.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,910 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,912 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,915 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,917 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,919 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,921 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_join.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,924 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,926 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,928 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,930 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,932 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2023-08-08T10:00:24,934 creating build/bdist.linux-armv7l/wheel/pybiotk/annodb 2023-08-08T10:00:24,935 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2023-08-08T10:00:24,938 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2023-08-08T10:00:24,940 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2023-08-08T10:00:24,942 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2023-08-08T10:00:24,943 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2023-08-08T10:00:24,946 creating build/bdist.linux-armv7l/wheel/pybiotk/data 2023-08-08T10:00:24,947 copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data 2023-08-08T10:00:24,949 copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data 2023-08-08T10:00:24,951 copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data 2023-08-08T10:00:24,952 copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk 2023-08-08T10:00:24,954 creating build/bdist.linux-armv7l/wheel/pybiotk/io 2023-08-08T10:00:24,955 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2023-08-08T10:00:24,957 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2023-08-08T10:00:24,959 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2023-08-08T10:00:24,961 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2023-08-08T10:00:24,963 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2023-08-08T10:00:24,965 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2023-08-08T10:00:24,967 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2023-08-08T10:00:24,969 creating build/bdist.linux-armv7l/wheel/pybiotk/intervals 2023-08-08T10:00:24,970 copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals 2023-08-08T10:00:24,972 copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals 2023-08-08T10:00:24,974 copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals 2023-08-08T10:00:24,976 copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals 2023-08-08T10:00:24,978 creating build/bdist.linux-armv7l/wheel/pybiotk/string 2023-08-08T10:00:24,979 copying build/lib.linux-armv7l-cpython-39/pybiotk/string/motif.py -> build/bdist.linux-armv7l/wheel/pybiotk/string 2023-08-08T10:00:24,982 copying build/lib.linux-armv7l-cpython-39/pybiotk/string/sequence.py -> build/bdist.linux-armv7l/wheel/pybiotk/string 2023-08-08T10:00:24,983 copying build/lib.linux-armv7l-cpython-39/pybiotk/string/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/string 2023-08-08T10:00:24,985 running install_egg_info 2023-08-08T10:00:24,995 Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.2.1-py3.9.egg-info 2023-08-08T10:00:25,009 running install_scripts 2023-08-08T10:00:25,010 creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data 2023-08-08T10:00:25,011 creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,012 copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,014 copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,016 copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,017 copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,019 copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,022 copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,024 copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,025 copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,027 copying build/scripts-3.9/plot_chip_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,029 copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,031 copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,033 copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,035 copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,037 copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,039 copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,041 copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,042 copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,044 copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,046 copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,048 copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts 2023-08-08T10:00:25,049 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_venn.R to 755 2023-08-08T10:00:25,050 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_corr.R to 755 2023-08-08T10:00:25,050 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_FRiPs.R to 755 2023-08-08T10:00:25,050 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/gtfparser.sh to 755 2023-08-08T10:00:25,051 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/diff_expr_plot.R to 755 2023-08-08T10:00:25,051 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/peak_anno.R to 755 2023-08-08T10:00:25,052 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/fastq_len.sh to 755 2023-08-08T10:00:25,052 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_peak_width.R to 755 2023-08-08T10:00:25,052 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_chip_summary.R to 755 2023-08-08T10:00:25,053 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_deeptools_fragmentsize.R to 755 2023-08-08T10:00:25,053 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_rep_cor.R to 755 2023-08-08T10:00:25,053 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_bar.R to 755 2023-08-08T10:00:25,054 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/fasta_u2t.sh to 755 2023-08-08T10:00:25,054 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/diff_expr_edgeR.R to 755 2023-08-08T10:00:25,054 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/plot_hist.R to 755 2023-08-08T10:00:25,055 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/get_chrom_length.sh to 755 2023-08-08T10:00:25,055 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/remove_duplicates.sh to 755 2023-08-08T10:00:25,055 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/fasta_len.sh to 755 2023-08-08T10:00:25,056 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/merge_subseq.sh to 755 2023-08-08T10:00:25,056 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.data/scripts/diff_expr_DESeq2.R to 755 2023-08-08T10:00:25,103 creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.1.dist-info/WHEEL 2023-08-08T10:00:25,106 creating '/tmp/pip-wheel-2w6jaeq1/.tmp-p36t4itw/pybiotk-1.2.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-08T10:00:25,108 adding 'pybiotk/__init__.py' 2023-08-08T10:00:25,110 adding 'pybiotk/annodb/__init__.py' 2023-08-08T10:00:25,112 adding 'pybiotk/annodb/anno.py' 2023-08-08T10:00:25,114 adding 'pybiotk/annodb/gene.py' 2023-08-08T10:00:25,116 adding 'pybiotk/annodb/merged_transcript.py' 2023-08-08T10:00:25,117 adding 'pybiotk/annodb/transcript.py' 2023-08-08T10:00:25,211 adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so' 2023-08-08T10:00:25,248 adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so' 2023-08-08T10:00:25,377 adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so' 2023-08-08T10:00:25,383 adding 'pybiotk/convert/__init__.py' 2023-08-08T10:00:25,384 adding 'pybiotk/convert/bam2fastx.py' 2023-08-08T10:00:25,386 adding 'pybiotk/convert/bampe_order_by_name.py' 2023-08-08T10:00:25,387 adding 'pybiotk/convert/bed2bedgraph.py' 2023-08-08T10:00:25,388 adding 'pybiotk/convert/fa2fastq.py' 2023-08-08T10:00:25,390 adding 'pybiotk/convert/fq2fasta.py' 2023-08-08T10:00:25,391 adding 'pybiotk/convert/gtf2bed.py' 2023-08-08T10:00:25,393 adding 'pybiotk/data/__init__.py' 2023-08-08T10:00:25,395 adding 'pybiotk/data/hg38.chrom.sizes' 2023-08-08T10:00:25,397 adding 'pybiotk/data/mm10.chrom.sizes' 2023-08-08T10:00:25,398 adding 'pybiotk/intervals/__init__.py' 2023-08-08T10:00:25,400 adding 'pybiotk/intervals/grange.py' 2023-08-08T10:00:25,401 adding 'pybiotk/intervals/merge_bed3.py' 2023-08-08T10:00:25,402 adding 'pybiotk/intervals/merge_intervals.py' 2023-08-08T10:00:25,404 adding 'pybiotk/io/__init__.py' 2023-08-08T10:00:25,406 adding 'pybiotk/io/bam.py' 2023-08-08T10:00:25,408 adding 'pybiotk/io/bed.py' 2023-08-08T10:00:25,409 adding 'pybiotk/io/bw.py' 2023-08-08T10:00:25,411 adding 'pybiotk/io/fasta.py' 2023-08-08T10:00:25,412 adding 'pybiotk/io/fastq.py' 2023-08-08T10:00:25,414 adding 'pybiotk/io/gtf.py' 2023-08-08T10:00:25,416 adding 'pybiotk/string/__init__.py' 2023-08-08T10:00:25,418 adding 'pybiotk/string/motif.py' 2023-08-08T10:00:25,419 adding 'pybiotk/string/sequence.py' 2023-08-08T10:00:25,421 adding 'pybiotk/utils/__init__.py' 2023-08-08T10:00:25,422 adding 'pybiotk/utils/bam_random.py' 2023-08-08T10:00:25,423 adding 'pybiotk/utils/fasta_filter.py' 2023-08-08T10:00:25,425 adding 'pybiotk/utils/fastq_join.py' 2023-08-08T10:00:25,426 adding 'pybiotk/utils/fastq_uniq.py' 2023-08-08T10:00:25,427 adding 'pybiotk/utils/fastx_rename.py' 2023-08-08T10:00:25,429 adding 'pybiotk/utils/fragment_size.py' 2023-08-08T10:00:25,431 adding 'pybiotk/utils/genomefetcher.py' 2023-08-08T10:00:25,432 adding 'pybiotk/utils/gtf_filter.py' 2023-08-08T10:00:25,433 adding 'pybiotk/utils/merge_row.py' 2023-08-08T10:00:25,435 adding 'pybiotk/utils/merge_subseq.py' 2023-08-08T10:00:25,436 adding 'pybiotk/utils/normalize.py' 2023-08-08T10:00:25,438 adding 'pybiotk/utils/pyanno.py' 2023-08-08T10:00:25,440 adding 'pybiotk/utils/read_tables.py' 2023-08-08T10:00:25,441 adding 'pybiotk/utils/reference_count.py' 2023-08-08T10:00:25,442 adding 'pybiotk/utils/reverse_fastx.py' 2023-08-08T10:00:25,443 adding 'pybiotk/utils/rmats_filter.py' 2023-08-08T10:00:25,445 adding 'pybiotk/utils/seq_random.py' 2023-08-08T10:00:25,446 adding 'pybiotk/utils/subseq_analysis.py' 2023-08-08T10:00:25,448 adding 'pybiotk/utils/summary_log.py' 2023-08-08T10:00:25,450 adding 'pybiotk/utils/utils.py' 2023-08-08T10:00:25,453 adding 'pybiotk-1.2.1.data/scripts/diff_expr_DESeq2.R' 2023-08-08T10:00:25,455 adding 'pybiotk-1.2.1.data/scripts/diff_expr_edgeR.R' 2023-08-08T10:00:25,457 adding 'pybiotk-1.2.1.data/scripts/diff_expr_plot.R' 2023-08-08T10:00:25,458 adding 'pybiotk-1.2.1.data/scripts/fasta_len.sh' 2023-08-08T10:00:25,459 adding 'pybiotk-1.2.1.data/scripts/fasta_u2t.sh' 2023-08-08T10:00:25,461 adding 'pybiotk-1.2.1.data/scripts/fastq_len.sh' 2023-08-08T10:00:25,462 adding 'pybiotk-1.2.1.data/scripts/get_chrom_length.sh' 2023-08-08T10:00:25,463 adding 'pybiotk-1.2.1.data/scripts/gtfparser.sh' 2023-08-08T10:00:25,464 adding 'pybiotk-1.2.1.data/scripts/merge_subseq.sh' 2023-08-08T10:00:25,465 adding 'pybiotk-1.2.1.data/scripts/peak_anno.R' 2023-08-08T10:00:25,467 adding 'pybiotk-1.2.1.data/scripts/plot_FRiPs.R' 2023-08-08T10:00:25,468 adding 'pybiotk-1.2.1.data/scripts/plot_bar.R' 2023-08-08T10:00:25,470 adding 'pybiotk-1.2.1.data/scripts/plot_chip_summary.R' 2023-08-08T10:00:25,471 adding 'pybiotk-1.2.1.data/scripts/plot_corr.R' 2023-08-08T10:00:25,473 adding 'pybiotk-1.2.1.data/scripts/plot_deeptools_fragmentsize.R' 2023-08-08T10:00:25,474 adding 'pybiotk-1.2.1.data/scripts/plot_hist.R' 2023-08-08T10:00:25,475 adding 'pybiotk-1.2.1.data/scripts/plot_peak_width.R' 2023-08-08T10:00:25,477 adding 'pybiotk-1.2.1.data/scripts/plot_rep_cor.R' 2023-08-08T10:00:25,478 adding 'pybiotk-1.2.1.data/scripts/plot_venn.R' 2023-08-08T10:00:25,479 adding 'pybiotk-1.2.1.data/scripts/remove_duplicates.sh' 2023-08-08T10:00:25,482 adding 'stream/__init__.py' 2023-08-08T10:00:25,484 adding 'stream/pipe.py' 2023-08-08T10:00:25,486 adding 'stream/stream.py' 2023-08-08T10:00:25,487 adding 'pybiotk-1.2.1.dist-info/LICENSE.txt' 2023-08-08T10:00:25,488 adding 'pybiotk-1.2.1.dist-info/METADATA' 2023-08-08T10:00:25,489 adding 'pybiotk-1.2.1.dist-info/WHEEL' 2023-08-08T10:00:25,490 adding 'pybiotk-1.2.1.dist-info/entry_points.txt' 2023-08-08T10:00:25,491 adding 'pybiotk-1.2.1.dist-info/top_level.txt' 2023-08-08T10:00:25,493 adding 'pybiotk-1.2.1.dist-info/RECORD' 2023-08-08T10:00:25,501 removing build/bdist.linux-armv7l/wheel 2023-08-08T10:00:25,654 Building wheel for pybiotk (pyproject.toml): finished with status 'done' 2023-08-08T10:00:25,674 Created wheel for pybiotk: filename=pybiotk-1.2.1-cp39-cp39-linux_armv7l.whl size=566245 sha256=144a7a71ee8e0bf29c46cea279177232a94953f4771939ff86b411e2041a03a9 2023-08-08T10:00:25,675 Stored in directory: /tmp/pip-ephem-wheel-cache-z6mamaw3/wheels/4b/1d/9f/2251cd3a5ec9230bae5e0cd419b4609404ef4d507061f81dd7 2023-08-08T10:00:25,689 Successfully built pybiotk 2023-08-08T10:00:25,713 Removed build tracker: '/tmp/pip-build-tracker-pdsriuwv'