2023-08-11T00:13:35,127 Created temporary directory: /tmp/pip-build-tracker-1673vzr3
2023-08-11T00:13:35,130 Initialized build tracking at /tmp/pip-build-tracker-1673vzr3
2023-08-11T00:13:35,130 Created build tracker: /tmp/pip-build-tracker-1673vzr3
2023-08-11T00:13:35,131 Entered build tracker: /tmp/pip-build-tracker-1673vzr3
2023-08-11T00:13:35,132 Created temporary directory: /tmp/pip-wheel-7pkvmgyw
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2023-08-11T00:13:35,196 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-08-11T00:13:35,204 2 location(s) to search for versions of cvi:
2023-08-11T00:13:35,204 * https://pypi.org/simple/cvi/
2023-08-11T00:13:35,204 * https://www.piwheels.org/simple/cvi/
2023-08-11T00:13:35,205 Fetching project page and analyzing links: https://pypi.org/simple/cvi/
2023-08-11T00:13:35,206 Getting page https://pypi.org/simple/cvi/
2023-08-11T00:13:35,210 Found index url https://pypi.org/simple/
2023-08-11T00:13:35,398 Fetched page https://pypi.org/simple/cvi/ as application/vnd.pypi.simple.v1+json
2023-08-11T00:13:35,410   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/d9/40/a81a72ef45bf5dcd7ee12fd4e521b20050e46f8f95e6cc08ad895e79d35b/cvi-0.1.0a1-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,411   Found link https://files.pythonhosted.org/packages/15/63/c98fc65fb527bf3c326122ac38adf2f99075db7e65b62e15c1f2e06ae63e/cvi-0.1.0a1.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.1.0a1
2023-08-11T00:13:35,412   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/a6/26/f61a6400e5756141b96f426c713eab9130857c53b76b13b1b4e1be3563ee/cvi-0.1.0a2-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,414   Found link https://files.pythonhosted.org/packages/0a/92/7dca8984b7158ac5b286ad7af4379960075bf8434c53e4a1e3a49f0e5cf0/cvi-0.1.0a2.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.1.0a2
2023-08-11T00:13:35,414   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/26/e0/07beb00e46f3d00b2fd106c0884111e445dc15e87bcab4eb7444d8a5be8e/cvi-0.1.0a3-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,416   Found link https://files.pythonhosted.org/packages/83/38/17e2d7569d5c565643e0ebd63f62071c43dd1a96cde5719066c6ec4455c9/cvi-0.1.0a3.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.1.0a3
2023-08-11T00:13:35,416   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/72/42/353ccfab1cfdb5d7e0cda90e5a9cb4d3dd24932a153fd3b466e8891ea793/cvi-0.1.0a4-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,418   Found link https://files.pythonhosted.org/packages/91/6f/fa2f196409f1c29910f5e3168d25240004b9277ea75f042c60dcf621c99b/cvi-0.1.0a4.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.1.0a4
2023-08-11T00:13:35,419   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/b1/1e/da713461fa1f70355c0ff09eb44a5291b40474c6ca1193987d50e5655a59/cvi-0.1.0-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,420   Found link https://files.pythonhosted.org/packages/93/9b/07fb46eef201e3c37396b82d75c5280ced222cabebaf527af367cd829f5b/cvi-0.1.0.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.1.0
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2023-08-11T00:13:35,422   Found link https://files.pythonhosted.org/packages/b0/ba/998362b94c5996635c53367c8f6ebc03774d1e82e3072d73d2a21745e8be/cvi-0.1.1.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.1.1
2023-08-11T00:13:35,423   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/bb/7c/350ccd0aaa609c3d3db04ffe37b3d14fba0c91885e01b4b9d431153d560d/cvi-0.2.0-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,424   Found link https://files.pythonhosted.org/packages/4c/30/7e5f6486482a9eb5a4773ba70290b7f6860fe7b7cebc248cef06d53f95b4/cvi-0.2.0.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.2.0
2023-08-11T00:13:35,425   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/16/b9/8b8a7685432ff74a83e9ac87ea08a3254687ac3df9b214d9a7ce1036c22a/cvi-0.3.0-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,426   Found link https://files.pythonhosted.org/packages/98/6c/bad42645f7b2457a2cd1ad18aeb6cdd3de825e00ec218125bc67408fa9bc/cvi-0.3.0.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.3.0
2023-08-11T00:13:35,427   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/21/93/bf31f070a59dda32a915ae67ae50c4b2d664c36e093870840e8bcb6fd71c/cvi-0.4.0-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,428   Found link https://files.pythonhosted.org/packages/48/2c/e6abc22752c9ac8cc8549a68210eb9d1f0bdf356e81e4d100e68a7108289/cvi-0.4.0.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.4.0
2023-08-11T00:13:35,429   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/32/66/e3fc3ba5082500bf760e452ae4d00df0f441a111b1dd48ad7b4a0502587e/cvi-0.5.0-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,430   Found link https://files.pythonhosted.org/packages/81/f5/169fe5782889068c4bffdfeb31080d4b5a2d691fe705008236ee480380c1/cvi-0.5.0.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.5.0
2023-08-11T00:13:35,431   Skipping link: No binaries permitted for cvi: https://files.pythonhosted.org/packages/52/3c/3c8f0876e1b9cf2c060b4492efb6e0dac5b400d41c94c23917e62584bf64/cvi-0.5.1-py3-none-any.whl (from https://pypi.org/simple/cvi/) (requires-python:>=3.6)
2023-08-11T00:13:35,432   Found link https://files.pythonhosted.org/packages/e5/e2/20ae87c7c088b1517d82006ba99bb6e4563f0647e409d77dd2bbb560b083/cvi-0.5.1.tar.gz (from https://pypi.org/simple/cvi/) (requires-python:>=3.6), version: 0.5.1
2023-08-11T00:13:35,433 Fetching project page and analyzing links: https://www.piwheels.org/simple/cvi/
2023-08-11T00:13:35,434 Getting page https://www.piwheels.org/simple/cvi/
2023-08-11T00:13:35,436 Found index url https://www.piwheels.org/simple/
2023-08-11T00:13:50,513 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/cvi/
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2023-08-11T00:14:58,352 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/cvi/
2023-08-11T00:15:13,437 Could not fetch URL https://www.piwheels.org/simple/cvi/: connection error: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/cvi/ (Caused by ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")) - skipping
2023-08-11T00:15:13,441 Skipping link: not a file: https://www.piwheels.org/simple/cvi/
2023-08-11T00:15:13,443 Skipping link: not a file: https://pypi.org/simple/cvi/
2023-08-11T00:15:13,483 Given no hashes to check 1 links for project 'cvi': discarding no candidates
2023-08-11T00:15:13,543 Collecting cvi==0.5.1
2023-08-11T00:15:13,548   Created temporary directory: /tmp/pip-unpack-7j5ai1x2
2023-08-11T00:15:13,718   Downloading cvi-0.5.1.tar.gz (24 kB)
2023-08-11T00:15:13,865   Added cvi==0.5.1 from https://files.pythonhosted.org/packages/e5/e2/20ae87c7c088b1517d82006ba99bb6e4563f0647e409d77dd2bbb560b083/cvi-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-1673vzr3'
2023-08-11T00:15:13,872   Created temporary directory: /tmp/pip-build-env-ln52ohp5
2023-08-11T00:15:13,894   Installing build dependencies: started
2023-08-11T00:15:13,896   Running command pip subprocess to install build dependencies
2023-08-11T00:15:16,852   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-08-11T00:15:17,768   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
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2023-08-11T00:16:28,348   Collecting setuptools>=42
2023-08-11T00:16:28,394     Using cached setuptools-68.0.0-py3-none-any.whl (804 kB)
2023-08-11T00:16:33,790   Installing collected packages: setuptools
2023-08-11T00:16:38,005   Successfully installed setuptools-68.0.0

2023-08-11T00:16:38,039   [notice] A new release of pip is available: 23.1.2 -> 23.2.1
2023-08-11T00:16:38,039   [notice] To update, run: python3 -m pip install --upgrade pip
2023-08-11T00:16:38,439   Installing build dependencies: finished with status 'done'
2023-08-11T00:16:38,453   Getting requirements to build wheel: started
2023-08-11T00:16:38,455   Running command Getting requirements to build wheel
2023-08-11T00:16:39,959   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `readme` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:16:39,960   !!

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2023-08-11T00:16:39,961           ##########################################################################
2023-08-11T00:16:39,962           # configuration would be ignored/result in error due to `pyproject.toml` #
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2023-08-11T00:16:39,963           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:16:39,964           `readme = "# cvi\n\nA Python package implementing both batch and incremental cluster validity indices (CVIs).\n\n| **Stable Docs**  | **Dev Docs** | **Build Status** | **Coverage** |\n|:----------------:|:------------:|:----------------:|:------------:|\n| [![Stable][docs-stable-img]][docs-stable-url] | [![Dev][docs-dev-img]][docs-dev-url]| [![Build Status][ci-img]][ci-url] | [![Codecov][codecov-img]][codecov-url] |\n| **Version** | **Issues** | **Downloads** | **Zenodo DOI** |\n| [![version][version-img]][version-url] | [![issues][issues-img]][issues-url] | [![Downloads][downloads-img]][downloads-url] |  [![DOI][zenodo-img]][zenodo-url] |\n\n[downloads-img]: https://static.pepy.tech/badge/cvi\n[downloads-url]: https://pepy.tech/project/cvi\n\n[zenodo-img]: https://zenodo.org/badge/526280198.svg\n[zenodo-url]: https://zenodo.org/badge/latestdoi/526280198\n\n[docs-stable-img]: https://readthedocs.org/projects/cluster-validity-indices/badge/?version=latest\n[docs-stable-url]: https://cluster-validity-indices.readthedocs.io/en/latest/?badge=latest\n\n[docs-dev-img]: https://readthedocs.org/projects/cluster-validity-indices/badge/?version=develop\n[docs-dev-url]: https://cluster-validity-indices.readthedocs.io/en/develop/?badge=develop\n\n[ci-img]: https://github.com/AP6YC/cvi/actions/workflows/Test.yml/badge.svg\n[ci-url]: https://github.com/AP6YC/cvi/actions/workflows/Test.yml\n\n[codecov-img]: https://codecov.io/gh/AP6YC/cvi/branch/main/graph/badge.svg\n[codecov-url]: https://codecov.io/gh/AP6YC/cvi\n\n[version-img]: https://img.shields.io/pypi/v/cvi.svg\n[version-url]: https://pypi.org/project/cvi\n\n[issues-img]: https://img.shields.io/github/issues/AP6YC/cvi?style=flat\n[issues-url]: https://github.com/AP6YC/cvi/issues\n\n## Table of Contents\n\n- [cvi](#cvi)\n  - [Table of Contents](#table-of-contents)\n  - [Cluster Validity Indices](#cluster-validity-indices)\n  - [Installation](#installation)\n  - [Usage](#usage)\n    - [Quickstart](#quickstart)\n    - [Detailed Usage](#detailed-usage)\n  - [Implemented CVIs](#implemented-cvis)\n  - [History](#history)\n  - [Acknowledgements](#acknowledgements)\n    - [Derivation](#derivation)\n    - [Authors](#authors)\n    - [Related Projects](#related-projects)\n\n## Cluster Validity Indices\n\nSay you have a clustering algorithm that clusters a set of samples containing features of some kind and some dimensionality.\nGreat!\nThat was a lot of work, and you should feel accomplished.\nBut how do you know that the algorithm performed _well_?\nBy definition, you wouldn't have the _true_ label belonging to each sample (if one could even exist in your context), just the label prescribed by your clustering algorithm.\n\n**Enter Cluster Validity Indices (CVIs)**.\n\nCVIs are metrics of cluster partitioning when true cluster labels are unavailable.\nEach operates on only the information available (i.e., the provided samples of features and the labels prescribed by the clustering algorithm) and produces a _metric_, a number that goes up or down according to how well the CVI believes the clustering algorithm appears to, well, _cluster_.\nClustering well in this context means correctly partitioning (i.e., separating) the data rather than prescribing too many different clusters (over partitioning) or too few (under partitioning).\nEvery CVI itself also behaves differently in terms of the range and scale of their numbers.\n**Furthermore, each CVI has an original batch implementation and incremental implementation that are equivalent**.\n\nThe `cvi` Python package contains a variety of these batch and incremental CVIs.\n\n## Installation\n\nThe `cvi` package is listed on PyPI, so you may install the latest version with\n\n```python\npip install cvi\n```\n\nYou can also specify a version to install in the usual way with\n\n```python\npip install cvi==v0.5.1\n```\n\nAlternatively, you can manually install a release from the [releases page](https://github.com/AP6YC/cvi/releases) on GitHub.\n\n## Usage\n\n### Quickstart\n\nCreate a CVI object and compute the criterion value in batch with `get_cvi`:\n\n```python\n# Import the library\nimport cvi\n# Create a Calinski-Harabasz (CH) CVI object\nmy_cvi = cvi.CH()\n# Load some data from some clustering algorithm\nsamples, labels = load_some_clustering_data()\n# Compute the final criterion value in batch\ncriterion_value = my_cvi.get_cvi(samples, labels)\n```\n\nor do it incrementally, also with `get_cvi`:\n\n```python\n# Datasets are numpy arrays\nimport numpy as np\n# Create a container for criterion values\nn_samples = len(labels)\ncriterion_values = np.zeros(n_samples)\n# Iterate over the data\nfor ix in range(n_samples):\n    criterion_values = my_cvi.get_cvi(samples[ix, :], labels[ix])\n```\n\n### Detailed Usage\n\nThe `cvi` package contains a set of implemented CVIs with batch and incremental update methods.\nEach CVI is a standalone stateful object inheriting from a base class `CVI`, and all `CVI` functions are object methods, such as those that update parameters and return the criterion value.\n\nInstantiate a CVI of you choice with the default constructor:\n\n```python\n# Import the package\nimport cvi\n# Import numpy for some data handling\nimport numpy as np\n\n# Instantiate a Calinski-Harabasz (CH) CVI object\nmy_cvi = cvi.CH()\n```\n\nCVIs are instantiated with their acronyms, with a list of all implemented CVIS being found in the [Implemented CVIs](#implemented-cvis) section.\n\nA batch of data is assumed to be a numpy array of samples and a numpy vector of integer labels.\n\n```python\n# Load some data\nsamples, labels = my_clustering_alg(some_data)\n```\n\n> **NOTE**:\n>\n> The `cvi` package assumes the Numpy **row-major** convention where rows are individual samples and columns are features.\n> A batch dataset is then `[n_samples, n_features]` large, and their corresponding labels are '[n_samples]` large.\n\nYou may compute the final criterion value with a batch update all at once with `CVI.get_cvi`\n\n```python\n# Get the final criterion value in batch mode\ncriterion_value = my_cvi.get_cvi(samples, labels)\n```\n\nor you may get them incrementally with the same method, where you pass instead just a single numpy vector of features and a single integer label.\nThe incremental methods are used automatically based upon the dimensions of the data that is passed.\n\n```python\n# Create a container for the criterion value after each sample\nn_samples = len(labels)\ncriterion_values = np.zeros(n_samples)\n\n# Iterate across the data and store the criterion value over time\nfor ix in range(n_samples):\n    sample = samples[ix, :]\n    label = labels[ix]\n    criterion_values[ix] = my_cvi.get_cvi(sample, label)\n```\n\n> **NOTE**:\n>\n> Currently only using _either_ batch _or_ incremental methods is supported; switching from batch to incremental updates with the same is not yet implemented.\n\n## Implemented CVIs\n\nThe following CVIs have been implemented as of the latest version of `cvi`:\n\n- **CH**: Calinski-Harabasz\n- **cSIL**: Centroid-based Silhouette\n- **DB**: Davies-Bouldin\n- **GD43**: Generalized Dunn's Index 43.\n- **GD53**: Generalized Dunn's Index 53.\n- **PS**: Partition Separation.\n- **rCIP**: (Renyi's) representative Cross Information Potential.\n- **WB**: WB-index.\n- **XB**: Xie-Beni.\n\n## History\n\n- 8/18/2022: Initialize project.\n- 9/8/2022: First release on PyPi and initiate GitFlow.\n\n## Acknowledgements\n\n### Derivation\n\nThe incremental and batch CVI implementations in this package are largely derived from the following Julia language implementations:\n\n- [ClusterValidityIndices.jl](https://github.com/AP6YC/ClusterValidityIndices.jl)\n\n### Authors\n\nThe principal authors of the `cvi` pacakge are:\n\n- Sasha Petrenko <petrenkos@mst.edu>\n- Nik Melton <nmmz76@mst.edu>\n\n### Related Projects\n\nIf this package is missing something that you need, feel free to check out some related Python cluster validity packages:\n\n- [validclust](https://github.com/crew102/validclust)\n- [clusterval](https://github.com/Nuno09/clusterval)\n"`

2023-08-11T00:16:39,964           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:16:39,965           consider this value unless `readme` is listed as `dynamic`.

2023-08-11T00:16:39,965           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:16:39,966           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:16:39,966           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:16:39,967           follow strictly the standard.

2023-08-11T00:16:39,967           To prevent this warning, you can list `readme` under `dynamic` or alternatively
2023-08-11T00:16:39,967           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:16:39,968           configuration.

2023-08-11T00:16:39,968           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:16:39,969           or your builds will no longer be supported.
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2023-08-11T00:16:39,970   !!
2023-08-11T00:16:39,970     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:16:40,530   running egg_info
2023-08-11T00:16:40,539   writing src/cvi.egg-info/PKG-INFO
2023-08-11T00:16:40,544   writing dependency_links to src/cvi.egg-info/dependency_links.txt
2023-08-11T00:16:40,549   writing requirements to src/cvi.egg-info/requires.txt
2023-08-11T00:16:40,551   writing top-level names to src/cvi.egg-info/top_level.txt
2023-08-11T00:16:40,588   reading manifest file 'src/cvi.egg-info/SOURCES.txt'
2023-08-11T00:16:40,593   adding license file 'LICENSE'
2023-08-11T00:16:40,599   writing manifest file 'src/cvi.egg-info/SOURCES.txt'
2023-08-11T00:16:40,603   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `requires-python` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:16:40,604   !!

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2023-08-11T00:16:40,605           # configuration would be ignored/result in error due to `pyproject.toml` #
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2023-08-11T00:16:40,607           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:16:40,608           `requires-python = <SpecifierSet('>=3.6')>`

2023-08-11T00:16:40,609           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:16:40,609           consider this value unless `requires-python` is listed as `dynamic`.

2023-08-11T00:16:40,610           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:16:40,611           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:16:40,612           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:16:40,612           follow strictly the standard.

2023-08-11T00:16:40,613           To prevent this warning, you can list `requires-python` under `dynamic` or alternatively
2023-08-11T00:16:40,613           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:16:40,614           configuration.

2023-08-11T00:16:40,615           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:16:40,615           or your builds will no longer be supported.
2023-08-11T00:16:40,616           ********************************************************************************

2023-08-11T00:16:40,616   !!
2023-08-11T00:16:40,617     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:16:40,617   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `classifiers` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:16:40,618   !!

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2023-08-11T00:16:40,619           # configuration would be ignored/result in error due to `pyproject.toml` #
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2023-08-11T00:16:40,621           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:16:40,622           `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: MIT License', 'Operating System :: OS Independent']`

2023-08-11T00:16:40,622           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:16:40,623           consider this value unless `classifiers` is listed as `dynamic`.

2023-08-11T00:16:40,624           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:16:40,624           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:16:40,625           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:16:40,625           follow strictly the standard.

2023-08-11T00:16:40,626           To prevent this warning, you can list `classifiers` under `dynamic` or alternatively
2023-08-11T00:16:40,626           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:16:40,626           configuration.

2023-08-11T00:16:40,627           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:16:40,628           or your builds will no longer be supported.
2023-08-11T00:16:40,628           ********************************************************************************

2023-08-11T00:16:40,629   !!
2023-08-11T00:16:40,629     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:16:40,630   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `urls` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:16:40,630   !!

2023-08-11T00:16:40,631           ********************************************************************************
2023-08-11T00:16:40,631           ##########################################################################
2023-08-11T00:16:40,632           # configuration would be ignored/result in error due to `pyproject.toml` #
2023-08-11T00:16:40,632           ##########################################################################

2023-08-11T00:16:40,633           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:16:40,634           `urls = {'Bug Tracker': 'https://github.com/AP6YC/cvi/issues', 'Documentation': 'https://cluster-validity-indices.readthedocs.io/'}`

2023-08-11T00:16:40,635           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:16:40,635           consider this value unless `urls` is listed as `dynamic`.

2023-08-11T00:16:40,636           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:16:40,637           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:16:40,637           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:16:40,638           follow strictly the standard.

2023-08-11T00:16:40,638           To prevent this warning, you can list `urls` under `dynamic` or alternatively
2023-08-11T00:16:40,639           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:16:40,639           configuration.

2023-08-11T00:16:40,640           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:16:40,640           or your builds will no longer be supported.
2023-08-11T00:16:40,641           ********************************************************************************

2023-08-11T00:16:40,642   !!
2023-08-11T00:16:40,642     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:16:40,776   Getting requirements to build wheel: finished with status 'done'
2023-08-11T00:16:40,800   Installing backend dependencies: started
2023-08-11T00:16:40,802   Running command pip subprocess to install backend dependencies
2023-08-11T00:16:43,707   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-08-11T00:16:44,579   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-08-11T00:16:50,053   WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', OSError(0, 'Error'))': /simple/wheel/
2023-08-11T00:17:05,639   WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/wheel/
2023-08-11T00:17:21,722   WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/wheel/
2023-08-11T00:17:28,797   WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', OSError(0, 'Error'))': /simple/wheel/
2023-08-11T00:17:47,880   WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='www.piwheels.org', port=443): Read timed out. (read timeout=15)")': /simple/wheel/
2023-08-11T00:17:53,064   Collecting wheel
2023-08-11T00:17:53,087     Using cached wheel-0.41.1-py3-none-any.whl (64 kB)
2023-08-11T00:17:57,727   Installing collected packages: wheel
2023-08-11T00:17:58,173     Creating /tmp/pip-build-env-ln52ohp5/normal/bin
2023-08-11T00:17:58,178     changing mode of /tmp/pip-build-env-ln52ohp5/normal/bin/wheel to 755
2023-08-11T00:17:58,205   Successfully installed wheel-0.41.1

2023-08-11T00:17:58,239   [notice] A new release of pip is available: 23.1.2 -> 23.2.1
2023-08-11T00:17:58,240   [notice] To update, run: python3 -m pip install --upgrade pip
2023-08-11T00:17:58,598   Installing backend dependencies: finished with status 'done'
2023-08-11T00:17:58,604   Created temporary directory: /tmp/pip-modern-metadata-742jx0gy
2023-08-11T00:17:58,611   Preparing metadata (pyproject.toml): started
2023-08-11T00:17:58,613   Running command Preparing metadata (pyproject.toml)
2023-08-11T00:17:59,985   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `readme` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:17:59,986   !!

2023-08-11T00:17:59,987           ********************************************************************************
2023-08-11T00:17:59,987           ##########################################################################
2023-08-11T00:17:59,987           # configuration would be ignored/result in error due to `pyproject.toml` #
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2023-08-11T00:17:59,988           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:17:59,989           `readme = "# cvi\n\nA Python package implementing both batch and incremental cluster validity indices (CVIs).\n\n| **Stable Docs**  | **Dev Docs** | **Build Status** | **Coverage** |\n|:----------------:|:------------:|:----------------:|:------------:|\n| [![Stable][docs-stable-img]][docs-stable-url] | [![Dev][docs-dev-img]][docs-dev-url]| [![Build Status][ci-img]][ci-url] | [![Codecov][codecov-img]][codecov-url] |\n| **Version** | **Issues** | **Downloads** | **Zenodo DOI** |\n| [![version][version-img]][version-url] | [![issues][issues-img]][issues-url] | [![Downloads][downloads-img]][downloads-url] |  [![DOI][zenodo-img]][zenodo-url] |\n\n[downloads-img]: https://static.pepy.tech/badge/cvi\n[downloads-url]: https://pepy.tech/project/cvi\n\n[zenodo-img]: https://zenodo.org/badge/526280198.svg\n[zenodo-url]: https://zenodo.org/badge/latestdoi/526280198\n\n[docs-stable-img]: https://readthedocs.org/projects/cluster-validity-indices/badge/?version=latest\n[docs-stable-url]: https://cluster-validity-indices.readthedocs.io/en/latest/?badge=latest\n\n[docs-dev-img]: https://readthedocs.org/projects/cluster-validity-indices/badge/?version=develop\n[docs-dev-url]: https://cluster-validity-indices.readthedocs.io/en/develop/?badge=develop\n\n[ci-img]: https://github.com/AP6YC/cvi/actions/workflows/Test.yml/badge.svg\n[ci-url]: https://github.com/AP6YC/cvi/actions/workflows/Test.yml\n\n[codecov-img]: https://codecov.io/gh/AP6YC/cvi/branch/main/graph/badge.svg\n[codecov-url]: https://codecov.io/gh/AP6YC/cvi\n\n[version-img]: https://img.shields.io/pypi/v/cvi.svg\n[version-url]: https://pypi.org/project/cvi\n\n[issues-img]: https://img.shields.io/github/issues/AP6YC/cvi?style=flat\n[issues-url]: https://github.com/AP6YC/cvi/issues\n\n## Table of Contents\n\n- [cvi](#cvi)\n  - [Table of Contents](#table-of-contents)\n  - [Cluster Validity Indices](#cluster-validity-indices)\n  - [Installation](#installation)\n  - [Usage](#usage)\n    - [Quickstart](#quickstart)\n    - [Detailed Usage](#detailed-usage)\n  - [Implemented CVIs](#implemented-cvis)\n  - [History](#history)\n  - [Acknowledgements](#acknowledgements)\n    - [Derivation](#derivation)\n    - [Authors](#authors)\n    - [Related Projects](#related-projects)\n\n## Cluster Validity Indices\n\nSay you have a clustering algorithm that clusters a set of samples containing features of some kind and some dimensionality.\nGreat!\nThat was a lot of work, and you should feel accomplished.\nBut how do you know that the algorithm performed _well_?\nBy definition, you wouldn't have the _true_ label belonging to each sample (if one could even exist in your context), just the label prescribed by your clustering algorithm.\n\n**Enter Cluster Validity Indices (CVIs)**.\n\nCVIs are metrics of cluster partitioning when true cluster labels are unavailable.\nEach operates on only the information available (i.e., the provided samples of features and the labels prescribed by the clustering algorithm) and produces a _metric_, a number that goes up or down according to how well the CVI believes the clustering algorithm appears to, well, _cluster_.\nClustering well in this context means correctly partitioning (i.e., separating) the data rather than prescribing too many different clusters (over partitioning) or too few (under partitioning).\nEvery CVI itself also behaves differently in terms of the range and scale of their numbers.\n**Furthermore, each CVI has an original batch implementation and incremental implementation that are equivalent**.\n\nThe `cvi` Python package contains a variety of these batch and incremental CVIs.\n\n## Installation\n\nThe `cvi` package is listed on PyPI, so you may install the latest version with\n\n```python\npip install cvi\n```\n\nYou can also specify a version to install in the usual way with\n\n```python\npip install cvi==v0.5.1\n```\n\nAlternatively, you can manually install a release from the [releases page](https://github.com/AP6YC/cvi/releases) on GitHub.\n\n## Usage\n\n### Quickstart\n\nCreate a CVI object and compute the criterion value in batch with `get_cvi`:\n\n```python\n# Import the library\nimport cvi\n# Create a Calinski-Harabasz (CH) CVI object\nmy_cvi = cvi.CH()\n# Load some data from some clustering algorithm\nsamples, labels = load_some_clustering_data()\n# Compute the final criterion value in batch\ncriterion_value = my_cvi.get_cvi(samples, labels)\n```\n\nor do it incrementally, also with `get_cvi`:\n\n```python\n# Datasets are numpy arrays\nimport numpy as np\n# Create a container for criterion values\nn_samples = len(labels)\ncriterion_values = np.zeros(n_samples)\n# Iterate over the data\nfor ix in range(n_samples):\n    criterion_values = my_cvi.get_cvi(samples[ix, :], labels[ix])\n```\n\n### Detailed Usage\n\nThe `cvi` package contains a set of implemented CVIs with batch and incremental update methods.\nEach CVI is a standalone stateful object inheriting from a base class `CVI`, and all `CVI` functions are object methods, such as those that update parameters and return the criterion value.\n\nInstantiate a CVI of you choice with the default constructor:\n\n```python\n# Import the package\nimport cvi\n# Import numpy for some data handling\nimport numpy as np\n\n# Instantiate a Calinski-Harabasz (CH) CVI object\nmy_cvi = cvi.CH()\n```\n\nCVIs are instantiated with their acronyms, with a list of all implemented CVIS being found in the [Implemented CVIs](#implemented-cvis) section.\n\nA batch of data is assumed to be a numpy array of samples and a numpy vector of integer labels.\n\n```python\n# Load some data\nsamples, labels = my_clustering_alg(some_data)\n```\n\n> **NOTE**:\n>\n> The `cvi` package assumes the Numpy **row-major** convention where rows are individual samples and columns are features.\n> A batch dataset is then `[n_samples, n_features]` large, and their corresponding labels are '[n_samples]` large.\n\nYou may compute the final criterion value with a batch update all at once with `CVI.get_cvi`\n\n```python\n# Get the final criterion value in batch mode\ncriterion_value = my_cvi.get_cvi(samples, labels)\n```\n\nor you may get them incrementally with the same method, where you pass instead just a single numpy vector of features and a single integer label.\nThe incremental methods are used automatically based upon the dimensions of the data that is passed.\n\n```python\n# Create a container for the criterion value after each sample\nn_samples = len(labels)\ncriterion_values = np.zeros(n_samples)\n\n# Iterate across the data and store the criterion value over time\nfor ix in range(n_samples):\n    sample = samples[ix, :]\n    label = labels[ix]\n    criterion_values[ix] = my_cvi.get_cvi(sample, label)\n```\n\n> **NOTE**:\n>\n> Currently only using _either_ batch _or_ incremental methods is supported; switching from batch to incremental updates with the same is not yet implemented.\n\n## Implemented CVIs\n\nThe following CVIs have been implemented as of the latest version of `cvi`:\n\n- **CH**: Calinski-Harabasz\n- **cSIL**: Centroid-based Silhouette\n- **DB**: Davies-Bouldin\n- **GD43**: Generalized Dunn's Index 43.\n- **GD53**: Generalized Dunn's Index 53.\n- **PS**: Partition Separation.\n- **rCIP**: (Renyi's) representative Cross Information Potential.\n- **WB**: WB-index.\n- **XB**: Xie-Beni.\n\n## History\n\n- 8/18/2022: Initialize project.\n- 9/8/2022: First release on PyPi and initiate GitFlow.\n\n## Acknowledgements\n\n### Derivation\n\nThe incremental and batch CVI implementations in this package are largely derived from the following Julia language implementations:\n\n- [ClusterValidityIndices.jl](https://github.com/AP6YC/ClusterValidityIndices.jl)\n\n### Authors\n\nThe principal authors of the `cvi` pacakge are:\n\n- Sasha Petrenko <petrenkos@mst.edu>\n- Nik Melton <nmmz76@mst.edu>\n\n### Related Projects\n\nIf this package is missing something that you need, feel free to check out some related Python cluster validity packages:\n\n- [validclust](https://github.com/crew102/validclust)\n- [clusterval](https://github.com/Nuno09/clusterval)\n"`

2023-08-11T00:17:59,990           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:17:59,990           consider this value unless `readme` is listed as `dynamic`.

2023-08-11T00:17:59,991           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:17:59,992           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:17:59,992           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:17:59,992           follow strictly the standard.

2023-08-11T00:17:59,993           To prevent this warning, you can list `readme` under `dynamic` or alternatively
2023-08-11T00:17:59,993           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:17:59,993           configuration.

2023-08-11T00:17:59,994           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:17:59,994           or your builds will no longer be supported.
2023-08-11T00:17:59,995           ********************************************************************************

2023-08-11T00:17:59,995   !!
2023-08-11T00:17:59,996     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:18:00,671   running dist_info
2023-08-11T00:18:00,683   creating /tmp/pip-modern-metadata-742jx0gy/cvi.egg-info
2023-08-11T00:18:00,693   writing /tmp/pip-modern-metadata-742jx0gy/cvi.egg-info/PKG-INFO
2023-08-11T00:18:00,697   writing dependency_links to /tmp/pip-modern-metadata-742jx0gy/cvi.egg-info/dependency_links.txt
2023-08-11T00:18:00,701   writing requirements to /tmp/pip-modern-metadata-742jx0gy/cvi.egg-info/requires.txt
2023-08-11T00:18:00,703   writing top-level names to /tmp/pip-modern-metadata-742jx0gy/cvi.egg-info/top_level.txt
2023-08-11T00:18:00,706   writing manifest file '/tmp/pip-modern-metadata-742jx0gy/cvi.egg-info/SOURCES.txt'
2023-08-11T00:18:00,744   reading manifest file '/tmp/pip-modern-metadata-742jx0gy/cvi.egg-info/SOURCES.txt'
2023-08-11T00:18:00,748   adding license file 'LICENSE'
2023-08-11T00:18:00,754   writing manifest file '/tmp/pip-modern-metadata-742jx0gy/cvi.egg-info/SOURCES.txt'
2023-08-11T00:18:00,756   creating '/tmp/pip-modern-metadata-742jx0gy/cvi-0.5.1.dist-info'
2023-08-11T00:18:00,822   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `requires-python` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:18:00,823   !!

2023-08-11T00:18:00,824           ********************************************************************************
2023-08-11T00:18:00,824           ##########################################################################
2023-08-11T00:18:00,824           # configuration would be ignored/result in error due to `pyproject.toml` #
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2023-08-11T00:18:00,826           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:18:00,827           `requires-python = <SpecifierSet('>=3.6')>`

2023-08-11T00:18:00,828           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:18:00,828           consider this value unless `requires-python` is listed as `dynamic`.

2023-08-11T00:18:00,829           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:18:00,830           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:18:00,830           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:18:00,831           follow strictly the standard.

2023-08-11T00:18:00,832           To prevent this warning, you can list `requires-python` under `dynamic` or alternatively
2023-08-11T00:18:00,832           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:18:00,833           configuration.

2023-08-11T00:18:00,833           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:18:00,834           or your builds will no longer be supported.
2023-08-11T00:18:00,834           ********************************************************************************

2023-08-11T00:18:00,835   !!
2023-08-11T00:18:00,836     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:18:00,836   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `classifiers` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:18:00,837   !!

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2023-08-11T00:18:00,838           ##########################################################################
2023-08-11T00:18:00,838           # configuration would be ignored/result in error due to `pyproject.toml` #
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2023-08-11T00:18:00,839           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:18:00,840           `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: MIT License', 'Operating System :: OS Independent']`

2023-08-11T00:18:00,841           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:18:00,841           consider this value unless `classifiers` is listed as `dynamic`.

2023-08-11T00:18:00,842           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:18:00,843           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:18:00,843           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:18:00,844           follow strictly the standard.

2023-08-11T00:18:00,844           To prevent this warning, you can list `classifiers` under `dynamic` or alternatively
2023-08-11T00:18:00,845           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:18:00,845           configuration.

2023-08-11T00:18:00,846           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:18:00,846           or your builds will no longer be supported.
2023-08-11T00:18:00,847           ********************************************************************************

2023-08-11T00:18:00,848   !!
2023-08-11T00:18:00,848     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:18:00,848   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `urls` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:18:00,849   !!

2023-08-11T00:18:00,849           ********************************************************************************
2023-08-11T00:18:00,850           ##########################################################################
2023-08-11T00:18:00,850           # configuration would be ignored/result in error due to `pyproject.toml` #
2023-08-11T00:18:00,851           ##########################################################################

2023-08-11T00:18:00,852           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:18:00,853           `urls = {'Bug Tracker': 'https://github.com/AP6YC/cvi/issues', 'Documentation': 'https://cluster-validity-indices.readthedocs.io/'}`

2023-08-11T00:18:00,854           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:18:00,854           consider this value unless `urls` is listed as `dynamic`.

2023-08-11T00:18:00,855           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:18:00,856           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:18:00,856           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:18:00,856           follow strictly the standard.

2023-08-11T00:18:00,857           To prevent this warning, you can list `urls` under `dynamic` or alternatively
2023-08-11T00:18:00,858           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:18:00,858           configuration.

2023-08-11T00:18:00,859           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:18:00,859           or your builds will no longer be supported.
2023-08-11T00:18:00,859           ********************************************************************************

2023-08-11T00:18:00,860   !!
2023-08-11T00:18:00,861     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:18:01,002   Preparing metadata (pyproject.toml): finished with status 'done'
2023-08-11T00:18:01,018   Source in /tmp/pip-wheel-7pkvmgyw/cvi_c6c1b6cd84b648b691931070b8bc52fa has version 0.5.1, which satisfies requirement cvi==0.5.1 from https://files.pythonhosted.org/packages/e5/e2/20ae87c7c088b1517d82006ba99bb6e4563f0647e409d77dd2bbb560b083/cvi-0.5.1.tar.gz
2023-08-11T00:18:01,020   Removed cvi==0.5.1 from https://files.pythonhosted.org/packages/e5/e2/20ae87c7c088b1517d82006ba99bb6e4563f0647e409d77dd2bbb560b083/cvi-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-1673vzr3'
2023-08-11T00:18:01,035 Created temporary directory: /tmp/pip-unpack-w332jd0x
2023-08-11T00:18:01,036 Building wheels for collected packages: cvi
2023-08-11T00:18:01,045   Created temporary directory: /tmp/pip-wheel-dxhpba84
2023-08-11T00:18:01,045   Destination directory: /tmp/pip-wheel-dxhpba84
2023-08-11T00:18:01,050   Building wheel for cvi (pyproject.toml): started
2023-08-11T00:18:01,052   Running command Building wheel for cvi (pyproject.toml)
2023-08-11T00:18:02,325   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `readme` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:18:02,326   !!

2023-08-11T00:18:02,327           ********************************************************************************
2023-08-11T00:18:02,327           ##########################################################################
2023-08-11T00:18:02,327           # configuration would be ignored/result in error due to `pyproject.toml` #
2023-08-11T00:18:02,328           ##########################################################################

2023-08-11T00:18:02,328           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:18:02,329           `readme = "# cvi\n\nA Python package implementing both batch and incremental cluster validity indices (CVIs).\n\n| **Stable Docs**  | **Dev Docs** | **Build Status** | **Coverage** |\n|:----------------:|:------------:|:----------------:|:------------:|\n| [![Stable][docs-stable-img]][docs-stable-url] | [![Dev][docs-dev-img]][docs-dev-url]| [![Build Status][ci-img]][ci-url] | [![Codecov][codecov-img]][codecov-url] |\n| **Version** | **Issues** | **Downloads** | **Zenodo DOI** |\n| [![version][version-img]][version-url] | [![issues][issues-img]][issues-url] | [![Downloads][downloads-img]][downloads-url] |  [![DOI][zenodo-img]][zenodo-url] |\n\n[downloads-img]: https://static.pepy.tech/badge/cvi\n[downloads-url]: https://pepy.tech/project/cvi\n\n[zenodo-img]: https://zenodo.org/badge/526280198.svg\n[zenodo-url]: https://zenodo.org/badge/latestdoi/526280198\n\n[docs-stable-img]: https://readthedocs.org/projects/cluster-validity-indices/badge/?version=latest\n[docs-stable-url]: https://cluster-validity-indices.readthedocs.io/en/latest/?badge=latest\n\n[docs-dev-img]: https://readthedocs.org/projects/cluster-validity-indices/badge/?version=develop\n[docs-dev-url]: https://cluster-validity-indices.readthedocs.io/en/develop/?badge=develop\n\n[ci-img]: https://github.com/AP6YC/cvi/actions/workflows/Test.yml/badge.svg\n[ci-url]: https://github.com/AP6YC/cvi/actions/workflows/Test.yml\n\n[codecov-img]: https://codecov.io/gh/AP6YC/cvi/branch/main/graph/badge.svg\n[codecov-url]: https://codecov.io/gh/AP6YC/cvi\n\n[version-img]: https://img.shields.io/pypi/v/cvi.svg\n[version-url]: https://pypi.org/project/cvi\n\n[issues-img]: https://img.shields.io/github/issues/AP6YC/cvi?style=flat\n[issues-url]: https://github.com/AP6YC/cvi/issues\n\n## Table of Contents\n\n- [cvi](#cvi)\n  - [Table of Contents](#table-of-contents)\n  - [Cluster Validity Indices](#cluster-validity-indices)\n  - [Installation](#installation)\n  - [Usage](#usage)\n    - [Quickstart](#quickstart)\n    - [Detailed Usage](#detailed-usage)\n  - [Implemented CVIs](#implemented-cvis)\n  - [History](#history)\n  - [Acknowledgements](#acknowledgements)\n    - [Derivation](#derivation)\n    - [Authors](#authors)\n    - [Related Projects](#related-projects)\n\n## Cluster Validity Indices\n\nSay you have a clustering algorithm that clusters a set of samples containing features of some kind and some dimensionality.\nGreat!\nThat was a lot of work, and you should feel accomplished.\nBut how do you know that the algorithm performed _well_?\nBy definition, you wouldn't have the _true_ label belonging to each sample (if one could even exist in your context), just the label prescribed by your clustering algorithm.\n\n**Enter Cluster Validity Indices (CVIs)**.\n\nCVIs are metrics of cluster partitioning when true cluster labels are unavailable.\nEach operates on only the information available (i.e., the provided samples of features and the labels prescribed by the clustering algorithm) and produces a _metric_, a number that goes up or down according to how well the CVI believes the clustering algorithm appears to, well, _cluster_.\nClustering well in this context means correctly partitioning (i.e., separating) the data rather than prescribing too many different clusters (over partitioning) or too few (under partitioning).\nEvery CVI itself also behaves differently in terms of the range and scale of their numbers.\n**Furthermore, each CVI has an original batch implementation and incremental implementation that are equivalent**.\n\nThe `cvi` Python package contains a variety of these batch and incremental CVIs.\n\n## Installation\n\nThe `cvi` package is listed on PyPI, so you may install the latest version with\n\n```python\npip install cvi\n```\n\nYou can also specify a version to install in the usual way with\n\n```python\npip install cvi==v0.5.1\n```\n\nAlternatively, you can manually install a release from the [releases page](https://github.com/AP6YC/cvi/releases) on GitHub.\n\n## Usage\n\n### Quickstart\n\nCreate a CVI object and compute the criterion value in batch with `get_cvi`:\n\n```python\n# Import the library\nimport cvi\n# Create a Calinski-Harabasz (CH) CVI object\nmy_cvi = cvi.CH()\n# Load some data from some clustering algorithm\nsamples, labels = load_some_clustering_data()\n# Compute the final criterion value in batch\ncriterion_value = my_cvi.get_cvi(samples, labels)\n```\n\nor do it incrementally, also with `get_cvi`:\n\n```python\n# Datasets are numpy arrays\nimport numpy as np\n# Create a container for criterion values\nn_samples = len(labels)\ncriterion_values = np.zeros(n_samples)\n# Iterate over the data\nfor ix in range(n_samples):\n    criterion_values = my_cvi.get_cvi(samples[ix, :], labels[ix])\n```\n\n### Detailed Usage\n\nThe `cvi` package contains a set of implemented CVIs with batch and incremental update methods.\nEach CVI is a standalone stateful object inheriting from a base class `CVI`, and all `CVI` functions are object methods, such as those that update parameters and return the criterion value.\n\nInstantiate a CVI of you choice with the default constructor:\n\n```python\n# Import the package\nimport cvi\n# Import numpy for some data handling\nimport numpy as np\n\n# Instantiate a Calinski-Harabasz (CH) CVI object\nmy_cvi = cvi.CH()\n```\n\nCVIs are instantiated with their acronyms, with a list of all implemented CVIS being found in the [Implemented CVIs](#implemented-cvis) section.\n\nA batch of data is assumed to be a numpy array of samples and a numpy vector of integer labels.\n\n```python\n# Load some data\nsamples, labels = my_clustering_alg(some_data)\n```\n\n> **NOTE**:\n>\n> The `cvi` package assumes the Numpy **row-major** convention where rows are individual samples and columns are features.\n> A batch dataset is then `[n_samples, n_features]` large, and their corresponding labels are '[n_samples]` large.\n\nYou may compute the final criterion value with a batch update all at once with `CVI.get_cvi`\n\n```python\n# Get the final criterion value in batch mode\ncriterion_value = my_cvi.get_cvi(samples, labels)\n```\n\nor you may get them incrementally with the same method, where you pass instead just a single numpy vector of features and a single integer label.\nThe incremental methods are used automatically based upon the dimensions of the data that is passed.\n\n```python\n# Create a container for the criterion value after each sample\nn_samples = len(labels)\ncriterion_values = np.zeros(n_samples)\n\n# Iterate across the data and store the criterion value over time\nfor ix in range(n_samples):\n    sample = samples[ix, :]\n    label = labels[ix]\n    criterion_values[ix] = my_cvi.get_cvi(sample, label)\n```\n\n> **NOTE**:\n>\n> Currently only using _either_ batch _or_ incremental methods is supported; switching from batch to incremental updates with the same is not yet implemented.\n\n## Implemented CVIs\n\nThe following CVIs have been implemented as of the latest version of `cvi`:\n\n- **CH**: Calinski-Harabasz\n- **cSIL**: Centroid-based Silhouette\n- **DB**: Davies-Bouldin\n- **GD43**: Generalized Dunn's Index 43.\n- **GD53**: Generalized Dunn's Index 53.\n- **PS**: Partition Separation.\n- **rCIP**: (Renyi's) representative Cross Information Potential.\n- **WB**: WB-index.\n- **XB**: Xie-Beni.\n\n## History\n\n- 8/18/2022: Initialize project.\n- 9/8/2022: First release on PyPi and initiate GitFlow.\n\n## Acknowledgements\n\n### Derivation\n\nThe incremental and batch CVI implementations in this package are largely derived from the following Julia language implementations:\n\n- [ClusterValidityIndices.jl](https://github.com/AP6YC/ClusterValidityIndices.jl)\n\n### Authors\n\nThe principal authors of the `cvi` pacakge are:\n\n- Sasha Petrenko <petrenkos@mst.edu>\n- Nik Melton <nmmz76@mst.edu>\n\n### Related Projects\n\nIf this package is missing something that you need, feel free to check out some related Python cluster validity packages:\n\n- [validclust](https://github.com/crew102/validclust)\n- [clusterval](https://github.com/Nuno09/clusterval)\n"`

2023-08-11T00:18:02,330           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:18:02,330           consider this value unless `readme` is listed as `dynamic`.

2023-08-11T00:18:02,331           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:18:02,332           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:18:02,332           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:18:02,332           follow strictly the standard.

2023-08-11T00:18:02,333           To prevent this warning, you can list `readme` under `dynamic` or alternatively
2023-08-11T00:18:02,333           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:18:02,334           configuration.

2023-08-11T00:18:02,334           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:18:02,335           or your builds will no longer be supported.
2023-08-11T00:18:02,335           ********************************************************************************

2023-08-11T00:18:02,335   !!
2023-08-11T00:18:02,336     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:18:02,952   running bdist_wheel
2023-08-11T00:18:02,994   running build
2023-08-11T00:18:02,995   running build_py
2023-08-11T00:18:03,006   creating build
2023-08-11T00:18:03,007   creating build/lib
2023-08-11T00:18:03,008   creating build/lib/cvi
2023-08-11T00:18:03,010   copying src/cvi/__init__.py -> build/lib/cvi
2023-08-11T00:18:03,017   creating build/lib/cvi/modules
2023-08-11T00:18:03,019   copying src/cvi/modules/GD43.py -> build/lib/cvi/modules
2023-08-11T00:18:03,024   copying src/cvi/modules/GD53.py -> build/lib/cvi/modules
2023-08-11T00:18:03,028   copying src/cvi/modules/XB.py -> build/lib/cvi/modules
2023-08-11T00:18:03,033   copying src/cvi/modules/CH.py -> build/lib/cvi/modules
2023-08-11T00:18:03,037   copying src/cvi/modules/cSIL.py -> build/lib/cvi/modules
2023-08-11T00:18:03,041   copying src/cvi/modules/PS.py -> build/lib/cvi/modules
2023-08-11T00:18:03,045   copying src/cvi/modules/_base.py -> build/lib/cvi/modules
2023-08-11T00:18:03,049   copying src/cvi/modules/WB.py -> build/lib/cvi/modules
2023-08-11T00:18:03,054   copying src/cvi/modules/DB.py -> build/lib/cvi/modules
2023-08-11T00:18:03,058   copying src/cvi/modules/rCIP.py -> build/lib/cvi/modules
2023-08-11T00:18:03,062   copying src/cvi/modules/__init__.py -> build/lib/cvi/modules
2023-08-11T00:18:03,067   creating build/lib/cvi/compat
2023-08-11T00:18:03,068   copying src/cvi/compat/v0.py -> build/lib/cvi/compat
2023-08-11T00:18:03,073   copying src/cvi/compat/__init__.py -> build/lib/cvi/compat
2023-08-11T00:18:03,077   running egg_info
2023-08-11T00:18:03,086   writing src/cvi.egg-info/PKG-INFO
2023-08-11T00:18:03,090   writing dependency_links to src/cvi.egg-info/dependency_links.txt
2023-08-11T00:18:03,094   writing requirements to src/cvi.egg-info/requires.txt
2023-08-11T00:18:03,096   writing top-level names to src/cvi.egg-info/top_level.txt
2023-08-11T00:18:03,115   reading manifest file 'src/cvi.egg-info/SOURCES.txt'
2023-08-11T00:18:03,120   adding license file 'LICENSE'
2023-08-11T00:18:03,126   writing manifest file 'src/cvi.egg-info/SOURCES.txt'
2023-08-11T00:18:03,152   installing to build/bdist.linux-armv7l/wheel
2023-08-11T00:18:03,152   running install
2023-08-11T00:18:03,213   running install_lib
2023-08-11T00:18:03,224   creating build/bdist.linux-armv7l
2023-08-11T00:18:03,225   creating build/bdist.linux-armv7l/wheel
2023-08-11T00:18:03,228   creating build/bdist.linux-armv7l/wheel/cvi
2023-08-11T00:18:03,231   creating build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,233   copying build/lib/cvi/modules/GD43.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,238   copying build/lib/cvi/modules/GD53.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,243   copying build/lib/cvi/modules/XB.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,247   copying build/lib/cvi/modules/CH.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,251   copying build/lib/cvi/modules/cSIL.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,256   copying build/lib/cvi/modules/PS.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,260   copying build/lib/cvi/modules/_base.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,264   copying build/lib/cvi/modules/WB.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,269   copying build/lib/cvi/modules/DB.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,273   copying build/lib/cvi/modules/rCIP.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,277   copying build/lib/cvi/modules/__init__.py -> build/bdist.linux-armv7l/wheel/cvi/modules
2023-08-11T00:18:03,281   copying build/lib/cvi/__init__.py -> build/bdist.linux-armv7l/wheel/cvi
2023-08-11T00:18:03,286   creating build/bdist.linux-armv7l/wheel/cvi/compat
2023-08-11T00:18:03,288   copying build/lib/cvi/compat/v0.py -> build/bdist.linux-armv7l/wheel/cvi/compat
2023-08-11T00:18:03,294   copying build/lib/cvi/compat/__init__.py -> build/bdist.linux-armv7l/wheel/cvi/compat
2023-08-11T00:18:03,297   running install_egg_info
2023-08-11T00:18:03,306   Copying src/cvi.egg-info to build/bdist.linux-armv7l/wheel/cvi-0.5.1-py3.7.egg-info
2023-08-11T00:18:03,326   running install_scripts
2023-08-11T00:18:03,356   creating build/bdist.linux-armv7l/wheel/cvi-0.5.1.dist-info/WHEEL
2023-08-11T00:18:03,361   creating '/tmp/pip-wheel-dxhpba84/.tmp-te51jvra/cvi-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-08-11T00:18:03,366   adding 'cvi/__init__.py'
2023-08-11T00:18:03,369   adding 'cvi/compat/__init__.py'
2023-08-11T00:18:03,375   adding 'cvi/compat/v0.py'
2023-08-11T00:18:03,380   adding 'cvi/modules/CH.py'
2023-08-11T00:18:03,384   adding 'cvi/modules/DB.py'
2023-08-11T00:18:03,387   adding 'cvi/modules/GD43.py'
2023-08-11T00:18:03,391   adding 'cvi/modules/GD53.py'
2023-08-11T00:18:03,395   adding 'cvi/modules/PS.py'
2023-08-11T00:18:03,402   adding 'cvi/modules/WB.py'
2023-08-11T00:18:03,405   adding 'cvi/modules/XB.py'
2023-08-11T00:18:03,408   adding 'cvi/modules/__init__.py'
2023-08-11T00:18:03,411   adding 'cvi/modules/_base.py'
2023-08-11T00:18:03,415   adding 'cvi/modules/cSIL.py'
2023-08-11T00:18:03,419   adding 'cvi/modules/rCIP.py'
2023-08-11T00:18:03,425   adding 'cvi-0.5.1.dist-info/LICENSE'
2023-08-11T00:18:03,429   adding 'cvi-0.5.1.dist-info/METADATA'
2023-08-11T00:18:03,431   adding 'cvi-0.5.1.dist-info/WHEEL'
2023-08-11T00:18:03,434   adding 'cvi-0.5.1.dist-info/top_level.txt'
2023-08-11T00:18:03,437   adding 'cvi-0.5.1.dist-info/RECORD'
2023-08-11T00:18:03,440   removing build/bdist.linux-armv7l/wheel
2023-08-11T00:18:03,457   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `requires-python` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:18:03,458   !!

2023-08-11T00:18:03,458           ********************************************************************************
2023-08-11T00:18:03,459           ##########################################################################
2023-08-11T00:18:03,459           # configuration would be ignored/result in error due to `pyproject.toml` #
2023-08-11T00:18:03,459           ##########################################################################

2023-08-11T00:18:03,460           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:18:03,460           `requires-python = <SpecifierSet('>=3.6')>`

2023-08-11T00:18:03,461           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:18:03,461           consider this value unless `requires-python` is listed as `dynamic`.

2023-08-11T00:18:03,462           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:18:03,463           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:18:03,463           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:18:03,464           follow strictly the standard.

2023-08-11T00:18:03,464           To prevent this warning, you can list `requires-python` under `dynamic` or alternatively
2023-08-11T00:18:03,465           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:18:03,465           configuration.

2023-08-11T00:18:03,466           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:18:03,467           or your builds will no longer be supported.
2023-08-11T00:18:03,467           ********************************************************************************

2023-08-11T00:18:03,468   !!
2023-08-11T00:18:03,468     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:18:03,469   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `classifiers` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:18:03,470   !!

2023-08-11T00:18:03,471           ********************************************************************************
2023-08-11T00:18:03,471           ##########################################################################
2023-08-11T00:18:03,472           # configuration would be ignored/result in error due to `pyproject.toml` #
2023-08-11T00:18:03,472           ##########################################################################

2023-08-11T00:18:03,473           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:18:03,474           `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: MIT License', 'Operating System :: OS Independent']`

2023-08-11T00:18:03,475           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:18:03,475           consider this value unless `classifiers` is listed as `dynamic`.

2023-08-11T00:18:03,476           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:18:03,477           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:18:03,477           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:18:03,478           follow strictly the standard.

2023-08-11T00:18:03,478           To prevent this warning, you can list `classifiers` under `dynamic` or alternatively
2023-08-11T00:18:03,479           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:18:03,479           configuration.

2023-08-11T00:18:03,480           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:18:03,480           or your builds will no longer be supported.
2023-08-11T00:18:03,481           ********************************************************************************

2023-08-11T00:18:03,482   !!
2023-08-11T00:18:03,482     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:18:03,483   /tmp/pip-build-env-ln52ohp5/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:62: _WouldIgnoreField: `urls` defined outside of `pyproject.toml` would be ignored.
2023-08-11T00:18:03,483   !!

2023-08-11T00:18:03,484           ********************************************************************************
2023-08-11T00:18:03,484           ##########################################################################
2023-08-11T00:18:03,485           # configuration would be ignored/result in error due to `pyproject.toml` #
2023-08-11T00:18:03,485           ##########################################################################

2023-08-11T00:18:03,486           The following seems to be defined outside of `pyproject.toml`:

2023-08-11T00:18:03,486           `urls = {'Bug Tracker': 'https://github.com/AP6YC/cvi/issues', 'Documentation': 'https://cluster-validity-indices.readthedocs.io/'}`

2023-08-11T00:18:03,487           According to the spec (see the link below), however, setuptools CANNOT
2023-08-11T00:18:03,488           consider this value unless `urls` is listed as `dynamic`.

2023-08-11T00:18:03,488           https://packaging.python.org/en/latest/specifications/declaring-project-metadata/

2023-08-11T00:18:03,489           For the time being, `setuptools` will still consider the given value (as a
2023-08-11T00:18:03,490           **transitional** measure), but please note that future releases of setuptools will
2023-08-11T00:18:03,490           follow strictly the standard.

2023-08-11T00:18:03,492           To prevent this warning, you can list `urls` under `dynamic` or alternatively
2023-08-11T00:18:03,492           remove the `[project]` table from your file and rely entirely on other means of
2023-08-11T00:18:03,493           configuration.

2023-08-11T00:18:03,494           By 2023-Oct-30, you need to update your project and remove deprecated calls
2023-08-11T00:18:03,494           or your builds will no longer be supported.
2023-08-11T00:18:03,495           ********************************************************************************

2023-08-11T00:18:03,495   !!
2023-08-11T00:18:03,496     _handle_missing_dynamic(dist, project_table)
2023-08-11T00:18:03,642   Building wheel for cvi (pyproject.toml): finished with status 'done'
2023-08-11T00:18:03,655   Created wheel for cvi: filename=cvi-0.5.1-py3-none-any.whl size=32013 sha256=be2d2c761f51450d5b66fd2c9fd2c6ea041baf719e34791b710e5ad502c011c4
2023-08-11T00:18:03,657   Stored in directory: /tmp/pip-ephem-wheel-cache-bud7_31o/wheels/d2/15/5f/9a20086bc113cb81fc3b877f26683862685572799ba3de8fa0
2023-08-11T00:18:03,686 Successfully built cvi
2023-08-11T00:18:03,696 Removed build tracker: '/tmp/pip-build-tracker-1673vzr3'