2023-08-11T15:09:09,881 Created temporary directory: /tmp/pip-build-tracker-95cf29n1 2023-08-11T15:09:09,882 Initialized build tracking at /tmp/pip-build-tracker-95cf29n1 2023-08-11T15:09:09,882 Created build tracker: /tmp/pip-build-tracker-95cf29n1 2023-08-11T15:09:09,883 Entered build tracker: /tmp/pip-build-tracker-95cf29n1 2023-08-11T15:09:09,883 Created temporary directory: /tmp/pip-wheel-w5gfajvl 2023-08-11T15:09:09,886 Created temporary directory: /tmp/pip-ephem-wheel-cache-l0iokksv 2023-08-11T15:09:09,913 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-11T15:09:09,916 2 location(s) to search for versions of tf-comb: 2023-08-11T15:09:09,916 * https://pypi.org/simple/tf-comb/ 2023-08-11T15:09:09,916 * https://www.piwheels.org/simple/tf-comb/ 2023-08-11T15:09:09,917 Fetching project page and analyzing links: https://pypi.org/simple/tf-comb/ 2023-08-11T15:09:09,917 Getting page https://pypi.org/simple/tf-comb/ 2023-08-11T15:09:09,919 Found index url https://pypi.org/simple/ 2023-08-11T15:09:09,969 Fetched page https://pypi.org/simple/tf-comb/ as application/vnd.pypi.simple.v1+json 2023-08-11T15:09:09,971 Found link https://files.pythonhosted.org/packages/49/f0/0e6d20e01c9263deca6e3aab61c0171757ce6a03e8fe58f4f1b5bbcfb3f6/TF-COMB-1.0.0.tar.gz (from https://pypi.org/simple/tf-comb/) (requires-python:>=3), version: 1.0.0 2023-08-11T15:09:09,972 Found link https://files.pythonhosted.org/packages/fd/3e/a35a0b018aeafa5c675dc8a6f4315655657ee8e6564cc4846382557778a1/TF-COMB-1.0.1.tar.gz (from https://pypi.org/simple/tf-comb/) (requires-python:>=3), version: 1.0.1 2023-08-11T15:09:09,972 Found link https://files.pythonhosted.org/packages/a3/a2/999f5a0c5d56b93c7bb009dacd210ea5bd7403ec28a0698a01cc79cd169b/TF-COMB-1.0.2.tar.gz (from https://pypi.org/simple/tf-comb/) (requires-python:>=3), version: 1.0.2 2023-08-11T15:09:09,973 Found link https://files.pythonhosted.org/packages/99/b7/c4db663c1b0de4543274fad7375d08a40f402515253e86036a75fcbe8433/TF-COMB-1.0.3.tar.gz (from https://pypi.org/simple/tf-comb/) (requires-python:>=3,<3.11), version: 1.0.3 2023-08-11T15:09:09,973 Found link https://files.pythonhosted.org/packages/8d/66/74eea16db76245a22c549095e00a98fc6f49b2c8b291491a0a91d724ef29/TF-COMB-1.1.tar.gz (from https://pypi.org/simple/tf-comb/) (requires-python:>=3,<3.11), version: 1.1 2023-08-11T15:09:09,974 Fetching project page and analyzing links: https://www.piwheels.org/simple/tf-comb/ 2023-08-11T15:09:09,974 Getting page https://www.piwheels.org/simple/tf-comb/ 2023-08-11T15:09:09,975 Found index url https://www.piwheels.org/simple/ 2023-08-11T15:09:10,156 Fetched page https://www.piwheels.org/simple/tf-comb/ as text/html 2023-08-11T15:09:10,162 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.1-cp37-cp37m-linux_armv7l.whl#sha256=f783dbf7f48386ee423c7b3b44151c056199a8d1dec5dfd839b62217f46fd3a7 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3,<3.11) 2023-08-11T15:09:10,162 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.1-cp37-cp37m-linux_armv6l.whl#sha256=f783dbf7f48386ee423c7b3b44151c056199a8d1dec5dfd839b62217f46fd3a7 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3,<3.11) 2023-08-11T15:09:10,163 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=f36f8a9a80ff91bc5465b36928a66d5771a4b72241c82eae4e4ae811c5b7d681 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3,<3.11) 2023-08-11T15:09:10,163 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=f36f8a9a80ff91bc5465b36928a66d5771a4b72241c82eae4e4ae811c5b7d681 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3,<3.11) 2023-08-11T15:09:10,163 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=496745e574038d21aa119579802144b1545aebe449ee697b8dadc3cc02f90998 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3,<3.11) 2023-08-11T15:09:10,163 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=496745e574038d21aa119579802144b1545aebe449ee697b8dadc3cc02f90998 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3,<3.11) 2023-08-11T15:09:10,163 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=597f0e43f3fedceb75bbf7bedf23201b5ec62637a4662d5ade1669ad765f739d (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,164 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=597f0e43f3fedceb75bbf7bedf23201b5ec62637a4662d5ade1669ad765f739d (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,164 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=1609ab0915d0c1e90470d77a9148b350b2d15c5d1e8acc44dedcb1c369aab192 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,164 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=1609ab0915d0c1e90470d77a9148b350b2d15c5d1e8acc44dedcb1c369aab192 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,164 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=1e04ad37824043a284e994475dd3e72d1ceeafb05aea2170683ec9cbdaba2abd (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,164 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=1e04ad37824043a284e994475dd3e72d1ceeafb05aea2170683ec9cbdaba2abd (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,165 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4ce657cf3213f8cddb0bdd25036ddbd394cf899291fd994b51860009ab33208a (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,165 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4ce657cf3213f8cddb0bdd25036ddbd394cf899291fd994b51860009ab33208a (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,165 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=d55f049f7c212430921021fd961cb7bdeeb82c0133524afb16e44c68e2b3e317 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,165 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=d55f049f7c212430921021fd961cb7bdeeb82c0133524afb16e44c68e2b3e317 (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,165 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=1b5ab430e980ec633b57309315e0af43f8e75f7ca5785099a89e6e9bbb3b171e (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,166 Skipping link: No binaries permitted for tf-comb: https://www.piwheels.org/simple/tf-comb/TF_COMB-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=1b5ab430e980ec633b57309315e0af43f8e75f7ca5785099a89e6e9bbb3b171e (from https://www.piwheels.org/simple/tf-comb/) (requires-python:>=3) 2023-08-11T15:09:10,166 Skipping link: not a file: https://www.piwheels.org/simple/tf-comb/ 2023-08-11T15:09:10,166 Skipping link: not a file: https://pypi.org/simple/tf-comb/ 2023-08-11T15:09:10,184 Given no hashes to check 1 links for project 'tf-comb': discarding no candidates 2023-08-11T15:09:10,201 Collecting tf-comb==1.1 2023-08-11T15:09:10,203 Created temporary directory: /tmp/pip-unpack-96ey404v 2023-08-11T15:09:10,248 Downloading TF-COMB-1.1.tar.gz (2.9 MB) 2023-08-11T15:09:10,866 Added tf-comb==1.1 from https://files.pythonhosted.org/packages/8d/66/74eea16db76245a22c549095e00a98fc6f49b2c8b291491a0a91d724ef29/TF-COMB-1.1.tar.gz to build tracker '/tmp/pip-build-tracker-95cf29n1' 2023-08-11T15:09:10,871 Created temporary directory: /tmp/pip-build-env-wot7_5es 2023-08-11T15:09:10,880 Installing build dependencies: started 2023-08-11T15:09:10,881 Running command pip subprocess to install build dependencies 2023-08-11T15:09:12,031 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-08-11T15:09:12,403 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-11T15:09:14,093 Collecting setuptools 2023-08-11T15:09:14,179 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-08-11T15:09:14,440 Collecting wheel 2023-08-11T15:09:14,459 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.1-py3-none-any.whl (64 kB) 2023-08-11T15:09:16,021 Collecting cython 2023-08-11T15:09:16,772 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.0-cp39-cp39-linux_armv7l.whl (10.6 MB) 2023-08-11T15:09:18,296 Collecting numpy 2023-08-11T15:09:19,201 Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp39-cp39-linux_armv7l.whl (12.5 MB) 2023-08-11T15:09:21,390 Installing collected packages: wheel, setuptools, numpy, cython 2023-08-11T15:09:21,619 Creating /tmp/pip-build-env-wot7_5es/overlay/bin 2023-08-11T15:09:21,621 changing mode of /tmp/pip-build-env-wot7_5es/overlay/bin/wheel to 755 2023-08-11T15:09:32,022 changing mode of /tmp/pip-build-env-wot7_5es/overlay/bin/f2py to 755 2023-08-11T15:09:32,024 changing mode of /tmp/pip-build-env-wot7_5es/overlay/bin/f2py3 to 755 2023-08-11T15:09:32,026 changing mode of /tmp/pip-build-env-wot7_5es/overlay/bin/f2py3.9 to 755 2023-08-11T15:09:35,452 changing mode of /tmp/pip-build-env-wot7_5es/overlay/bin/cygdb to 755 2023-08-11T15:09:35,454 changing mode of /tmp/pip-build-env-wot7_5es/overlay/bin/cython to 755 2023-08-11T15:09:35,456 changing mode of /tmp/pip-build-env-wot7_5es/overlay/bin/cythonize to 755 2023-08-11T15:09:35,481 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2023-08-11T15:09:35,481 scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.25.2 which is incompatible. 2023-08-11T15:09:35,481 Successfully installed cython-3.0.0 numpy-1.25.2 setuptools-68.0.0 wheel-0.41.1 2023-08-11T15:09:35,495 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-11T15:09:35,495 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-11T15:09:35,897 Installing build dependencies: finished with status 'done' 2023-08-11T15:09:35,902 Getting requirements to build wheel: started 2023-08-11T15:09:35,903 Running command Getting requirements to build wheel 2023-08-11T15:09:36,766 Getting requirements to build wheel: finished with status 'done' 2023-08-11T15:09:36,777 Created temporary directory: /tmp/pip-modern-metadata-9bddienx 2023-08-11T15:09:36,780 Preparing metadata (pyproject.toml): started 2023-08-11T15:09:36,780 Running command Preparing metadata (pyproject.toml) 2023-08-11T15:09:37,547 running dist_info 2023-08-11T15:09:37,565 creating /tmp/pip-modern-metadata-9bddienx/TF_COMB.egg-info 2023-08-11T15:09:37,570 writing /tmp/pip-modern-metadata-9bddienx/TF_COMB.egg-info/PKG-INFO 2023-08-11T15:09:37,573 writing dependency_links to /tmp/pip-modern-metadata-9bddienx/TF_COMB.egg-info/dependency_links.txt 2023-08-11T15:09:37,575 writing requirements to /tmp/pip-modern-metadata-9bddienx/TF_COMB.egg-info/requires.txt 2023-08-11T15:09:37,576 writing top-level names to /tmp/pip-modern-metadata-9bddienx/TF_COMB.egg-info/top_level.txt 2023-08-11T15:09:37,577 writing manifest file '/tmp/pip-modern-metadata-9bddienx/TF_COMB.egg-info/SOURCES.txt' 2023-08-11T15:09:37,603 reading manifest file '/tmp/pip-modern-metadata-9bddienx/TF_COMB.egg-info/SOURCES.txt' 2023-08-11T15:09:37,605 reading manifest template 'MANIFEST.in' 2023-08-11T15:09:37,607 warning: no previously-included files found matching 'data/*' 2023-08-11T15:09:37,608 warning: no previously-included files found matching 'examples/*' 2023-08-11T15:09:37,608 adding license file 'LICENSE' 2023-08-11T15:09:37,611 writing manifest file '/tmp/pip-modern-metadata-9bddienx/TF_COMB.egg-info/SOURCES.txt' 2023-08-11T15:09:37,612 creating '/tmp/pip-modern-metadata-9bddienx/TF_COMB-1.1.dist-info' 2023-08-11T15:09:37,788 Preparing metadata (pyproject.toml): finished with status 'done' 2023-08-11T15:09:37,794 Source in /tmp/pip-wheel-w5gfajvl/tf-comb_c34e802f795c438aba0661fea2eb0768 has version 1.1, which satisfies requirement tf-comb==1.1 from https://files.pythonhosted.org/packages/8d/66/74eea16db76245a22c549095e00a98fc6f49b2c8b291491a0a91d724ef29/TF-COMB-1.1.tar.gz 2023-08-11T15:09:37,795 Removed tf-comb==1.1 from https://files.pythonhosted.org/packages/8d/66/74eea16db76245a22c549095e00a98fc6f49b2c8b291491a0a91d724ef29/TF-COMB-1.1.tar.gz from build tracker '/tmp/pip-build-tracker-95cf29n1' 2023-08-11T15:09:37,801 Created temporary directory: /tmp/pip-unpack-qev6d4kq 2023-08-11T15:09:37,802 Building wheels for collected packages: tf-comb 2023-08-11T15:09:37,806 Created temporary directory: /tmp/pip-wheel-kckheva_ 2023-08-11T15:09:37,806 Destination directory: /tmp/pip-wheel-kckheva_ 2023-08-11T15:09:37,808 Building wheel for tf-comb (pyproject.toml): started 2023-08-11T15:09:37,809 Running command Building wheel for tf-comb (pyproject.toml) 2023-08-11T15:09:38,587 running bdist_wheel 2023-08-11T15:09:38,623 running build 2023-08-11T15:09:38,623 running build_py 2023-08-11T15:09:38,633 creating build 2023-08-11T15:09:38,634 creating build/lib.linux-armv7l-cpython-39 2023-08-11T15:09:38,635 creating build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,636 copying tfcomb/network.py -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,638 copying tfcomb/plotting.py -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,641 copying tfcomb/annotation.py -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,643 copying tfcomb/objects.py -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,648 copying tfcomb/__init__.py -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,649 copying tfcomb/analysis.py -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,651 copying tfcomb/utils.py -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,654 copying tfcomb/logging.py -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,656 running egg_info 2023-08-11T15:09:38,661 writing TF_COMB.egg-info/PKG-INFO 2023-08-11T15:09:38,663 writing dependency_links to TF_COMB.egg-info/dependency_links.txt 2023-08-11T15:09:38,665 writing requirements to TF_COMB.egg-info/requires.txt 2023-08-11T15:09:38,666 writing top-level names to TF_COMB.egg-info/top_level.txt 2023-08-11T15:09:38,678 reading manifest file 'TF_COMB.egg-info/SOURCES.txt' 2023-08-11T15:09:38,684 reading manifest template 'MANIFEST.in' 2023-08-11T15:09:38,686 warning: no previously-included files found matching 'data/*' 2023-08-11T15:09:38,686 warning: no previously-included files found matching 'examples/*' 2023-08-11T15:09:38,687 adding license file 'LICENSE' 2023-08-11T15:09:38,690 writing manifest file 'TF_COMB.egg-info/SOURCES.txt' 2023-08-11T15:09:38,693 /tmp/pip-build-env-wot7_5es/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'tfcomb.data' is absent from the `packages` configuration. 2023-08-11T15:09:38,694 !! 2023-08-11T15:09:38,694 ******************************************************************************** 2023-08-11T15:09:38,694 ############################ 2023-08-11T15:09:38,694 # Package would be ignored # 2023-08-11T15:09:38,694 ############################ 2023-08-11T15:09:38,695 Python recognizes 'tfcomb.data' as an importable package[^1], 2023-08-11T15:09:38,695 but it is absent from setuptools' `packages` configuration. 2023-08-11T15:09:38,695 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-11T15:09:38,695 package, please make sure that 'tfcomb.data' is explicitly added 2023-08-11T15:09:38,695 to the `packages` configuration field. 2023-08-11T15:09:38,695 Alternatively, you can also rely on setuptools' discovery methods 2023-08-11T15:09:38,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-11T15:09:38,696 instead of `find_packages(...)`/`find:`). 2023-08-11T15:09:38,696 You can read more about "package discovery" on setuptools documentation page: 2023-08-11T15:09:38,696 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-11T15:09:38,696 If you don't want 'tfcomb.data' to be distributed and are 2023-08-11T15:09:38,697 already explicitly excluding 'tfcomb.data' via 2023-08-11T15:09:38,697 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-11T15:09:38,697 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-11T15:09:38,697 combination with a more fine grained `package-data` configuration. 2023-08-11T15:09:38,697 You can read more about "package data files" on setuptools documentation page: 2023-08-11T15:09:38,697 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-11T15:09:38,698 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-11T15:09:38,698 even if it does not contain any `.py` files. 2023-08-11T15:09:38,698 On the other hand, currently there is no concept of package data 2023-08-11T15:09:38,698 directory, all directories are treated like packages. 2023-08-11T15:09:38,698 ******************************************************************************** 2023-08-11T15:09:38,699 !! 2023-08-11T15:09:38,699 check.warn(importable) 2023-08-11T15:09:38,699 copying tfcomb/counting.c -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,704 copying tfcomb/counting.pyx -> build/lib.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:38,707 creating build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,708 copying tfcomb/data/HOCOMOCOv11_HUMAN.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,711 copying tfcomb/data/JASPAR2020_CORE_vertebrates.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,718 copying tfcomb/data/dmelanogaster_genes.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,744 copying tfcomb/data/drerio_genes.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,772 copying tfcomb/data/hsapiens_genes.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,784 copying tfcomb/data/mmusculus_genes.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,796 copying tfcomb/data/scerevisiae_genes.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,800 copying tfcomb/data/tax_ids.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,802 copying tfcomb/data/xtropicalis_genes.txt -> build/lib.linux-armv7l-cpython-39/tfcomb/data 2023-08-11T15:09:38,812 running build_ext 2023-08-11T15:09:41,322 Compiling tfcomb/counting.pyx because it changed. 2023-08-11T15:09:41,322 [1/1] Cythonizing tfcomb/counting.pyx 2023-08-11T15:09:41,323 building 'tfcomb.counting' extension 2023-08-11T15:09:41,323 creating build/temp.linux-armv7l-cpython-39 2023-08-11T15:09:41,324 creating build/temp.linux-armv7l-cpython-39/tfcomb 2023-08-11T15:09:41,325 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I. -I/tmp/pip-build-env-wot7_5es/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c tfcomb/counting.c -o build/temp.linux-armv7l-cpython-39/tfcomb/counting.o 2023-08-11T15:09:41,674 In file included from /tmp/pip-build-env-wot7_5es/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-11T15:09:41,674 from /tmp/pip-build-env-wot7_5es/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-11T15:09:41,675 from /tmp/pip-build-env-wot7_5es/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-11T15:09:41,675 from tfcomb/counting.c:1107: 2023-08-11T15:09:41,675 /tmp/pip-build-env-wot7_5es/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-11T15:09:41,675 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-11T15:09:41,675 | ^~~~~~~ 2023-08-11T15:09:51,405 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/tfcomb/counting.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/tfcomb/counting.cpython-39-arm-linux-gnueabihf.so 2023-08-11T15:09:51,555 installing to build/bdist.linux-armv7l/wheel 2023-08-11T15:09:51,556 running install 2023-08-11T15:09:51,581 running install_lib 2023-08-11T15:09:51,589 creating build/bdist.linux-armv7l 2023-08-11T15:09:51,589 creating build/bdist.linux-armv7l/wheel 2023-08-11T15:09:51,591 creating build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,592 copying build/lib.linux-armv7l-cpython-39/tfcomb/network.py -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,594 copying build/lib.linux-armv7l-cpython-39/tfcomb/counting.c -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,603 copying build/lib.linux-armv7l-cpython-39/tfcomb/plotting.py -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,607 creating build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,608 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/hsapiens_genes.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,619 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/drerio_genes.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,636 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/JASPAR2020_CORE_vertebrates.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,642 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/HOCOMOCOv11_HUMAN.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,645 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/xtropicalis_genes.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,655 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/tax_ids.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,657 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/mmusculus_genes.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,669 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/scerevisiae_genes.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,673 copying build/lib.linux-armv7l-cpython-39/tfcomb/data/dmelanogaster_genes.txt -> build/bdist.linux-armv7l/wheel/tfcomb/data 2023-08-11T15:09:51,693 copying build/lib.linux-armv7l-cpython-39/tfcomb/counting.pyx -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,696 copying build/lib.linux-armv7l-cpython-39/tfcomb/annotation.py -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,699 copying build/lib.linux-armv7l-cpython-39/tfcomb/counting.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,710 copying build/lib.linux-armv7l-cpython-39/tfcomb/objects.py -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,715 copying build/lib.linux-armv7l-cpython-39/tfcomb/__init__.py -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,717 copying build/lib.linux-armv7l-cpython-39/tfcomb/analysis.py -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,720 copying build/lib.linux-armv7l-cpython-39/tfcomb/utils.py -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,724 copying build/lib.linux-armv7l-cpython-39/tfcomb/logging.py -> build/bdist.linux-armv7l/wheel/tfcomb 2023-08-11T15:09:51,726 running install_egg_info 2023-08-11T15:09:51,739 Copying TF_COMB.egg-info to build/bdist.linux-armv7l/wheel/TF_COMB-1.1-py3.9.egg-info 2023-08-11T15:09:51,753 running install_scripts 2023-08-11T15:09:51,808 creating build/bdist.linux-armv7l/wheel/TF_COMB-1.1.dist-info/WHEEL 2023-08-11T15:09:51,811 creating '/tmp/pip-wheel-kckheva_/.tmp-wpm78cfl/TF_COMB-1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-11T15:09:51,816 adding 'tfcomb/__init__.py' 2023-08-11T15:09:51,818 adding 'tfcomb/analysis.py' 2023-08-11T15:09:51,821 adding 'tfcomb/annotation.py' 2023-08-11T15:09:51,855 adding 'tfcomb/counting.c' 2023-08-11T15:09:51,953 adding 'tfcomb/counting.cpython-39-arm-linux-gnueabihf.so' 2023-08-11T15:09:51,960 adding 'tfcomb/counting.pyx' 2023-08-11T15:09:51,962 adding 'tfcomb/logging.py' 2023-08-11T15:09:51,967 adding 'tfcomb/network.py' 2023-08-11T15:09:52,001 adding 'tfcomb/objects.py' 2023-08-11T15:09:52,009 adding 'tfcomb/plotting.py' 2023-08-11T15:09:52,025 adding 'tfcomb/utils.py' 2023-08-11T15:09:52,072 adding 'tfcomb/data/HOCOMOCOv11_HUMAN.txt' 2023-08-11T15:09:52,138 adding 'tfcomb/data/JASPAR2020_CORE_vertebrates.txt' 2023-08-11T15:09:52,252 adding 'tfcomb/data/dmelanogaster_genes.txt' 2023-08-11T15:09:52,395 adding 'tfcomb/data/drerio_genes.txt' 2023-08-11T15:09:52,499 adding 'tfcomb/data/hsapiens_genes.txt' 2023-08-11T15:09:52,598 adding 'tfcomb/data/mmusculus_genes.txt' 2023-08-11T15:09:52,644 adding 'tfcomb/data/scerevisiae_genes.txt' 2023-08-11T15:09:52,646 adding 'tfcomb/data/tax_ids.txt' 2023-08-11T15:09:52,721 adding 'tfcomb/data/xtropicalis_genes.txt' 2023-08-11T15:09:52,726 adding 'TF_COMB-1.1.dist-info/LICENSE' 2023-08-11T15:09:52,728 adding 'TF_COMB-1.1.dist-info/METADATA' 2023-08-11T15:09:52,729 adding 'TF_COMB-1.1.dist-info/WHEEL' 2023-08-11T15:09:52,730 adding 'TF_COMB-1.1.dist-info/top_level.txt' 2023-08-11T15:09:52,732 adding 'TF_COMB-1.1.dist-info/RECORD' 2023-08-11T15:09:52,750 removing build/bdist.linux-armv7l/wheel 2023-08-11T15:09:53,022 Building wheel for tf-comb (pyproject.toml): finished with status 'done' 2023-08-11T15:09:53,058 Created wheel for tf-comb: filename=TF_COMB-1.1-cp39-cp39-linux_armv7l.whl size=1661038 sha256=2929692abecda233d86ba8cb5f2350581ca8555c623914fd330474b6c481b227 2023-08-11T15:09:53,060 Stored in directory: /tmp/pip-ephem-wheel-cache-l0iokksv/wheels/20/a4/61/b768ceec3f8bfb6baa64e5d3b18830f0a8c6d5f514c383e393 2023-08-11T15:09:53,072 Successfully built tf-comb 2023-08-11T15:09:53,126 Removed build tracker: '/tmp/pip-build-tracker-95cf29n1'