2023-08-12T08:48:37,864 Created temporary directory: /tmp/pip-build-tracker-e7qx8yu8 2023-08-12T08:48:37,865 Initialized build tracking at /tmp/pip-build-tracker-e7qx8yu8 2023-08-12T08:48:37,865 Created build tracker: /tmp/pip-build-tracker-e7qx8yu8 2023-08-12T08:48:37,865 Entered build tracker: /tmp/pip-build-tracker-e7qx8yu8 2023-08-12T08:48:37,866 Created temporary directory: /tmp/pip-wheel-idgghc6o 2023-08-12T08:48:37,869 Created temporary directory: /tmp/pip-ephem-wheel-cache-tmyjhu7h 2023-08-12T08:48:37,895 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-12T08:48:37,898 2 location(s) to search for versions of pyslow5: 2023-08-12T08:48:37,898 * https://pypi.org/simple/pyslow5/ 2023-08-12T08:48:37,898 * https://www.piwheels.org/simple/pyslow5/ 2023-08-12T08:48:37,899 Fetching project page and analyzing links: https://pypi.org/simple/pyslow5/ 2023-08-12T08:48:37,899 Getting page https://pypi.org/simple/pyslow5/ 2023-08-12T08:48:37,901 Found index url https://pypi.org/simple/ 2023-08-12T08:48:37,951 Fetched page https://pypi.org/simple/pyslow5/ as application/vnd.pypi.simple.v1+json 2023-08-12T08:48:37,955 Found link https://files.pythonhosted.org/packages/23/0d/38c8cfedd09e7f753347b6ecd717a101c7236daf2ecccb34d44cedc6f125/pyslow5-0.2.0a1.tar.gz (from https://pypi.org/simple/pyslow5/), version: 0.2.0a1 2023-08-12T08:48:37,956 Found link https://files.pythonhosted.org/packages/41/8b/eed2c94d79c0af2a69cddfcbc774697dbac35e0a053f7bfd452a629aca4a/pyslow5-0.3.0a1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0a1 2023-08-12T08:48:37,957 Found link https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0 2023-08-12T08:48:37,957 Found link https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.4.0 2023-08-12T08:48:37,958 Found link https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a1 2023-08-12T08:48:37,959 Found link https://files.pythonhosted.org/packages/f2/8e/cc65540c51e93847d6d6302b2fff701ee10e464898844414449e05a4d333/pyslow5-0.5.0a2.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a2 2023-08-12T08:48:37,959 Found link https://files.pythonhosted.org/packages/ad/4a/43f267cff4fac073b610a2b1eeb219c0be3ca775c937e3811c438ee2577e/pyslow5-0.5.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0 2023-08-12T08:48:37,960 Found link https://files.pythonhosted.org/packages/3b/8b/a5bb994f4c963f8b969ab4a8c4c46f01ed4b95239fbb2b1180c77452f50b/pyslow5-0.6.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.6.0 2023-08-12T08:48:37,960 Found link https://files.pythonhosted.org/packages/04/d6/970f6da0fce1afd315a3e763ec8a7175791cce0ef5d08968a5fef2c0add0/pyslow5-0.7.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.7.0 2023-08-12T08:48:37,961 Found link https://files.pythonhosted.org/packages/d5/aa/815199ef79e407b2fba5e16b8d83c2bb7e00a640d30e67921d2f672e0d9d/pyslow5-0.8.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.8.0 2023-08-12T08:48:37,962 Found link https://files.pythonhosted.org/packages/28/1e/d4377af23de1ab4535ebe911e6b34afa6ee5d8a33a9b20388076f3ebca2e/pyslow5-0.9.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.9.0 2023-08-12T08:48:37,962 Found link https://files.pythonhosted.org/packages/78/f1/0f9a1ed7f046356b78aee6ff4f254898012b0c0a61e06eec7c5248099a0c/pyslow5-1.0.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.0.0 2023-08-12T08:48:37,963 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/31/2a/88c40313ad647d922cf2453f0d049aa90da7de1158f38f959d42a351d690/pyslow5-1.0.1b0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:37,963 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/fe/21/024bf2a99f54ae23a902dc0a63e3226a8a57a614d4ed8e966ba71c6fbac6/pyslow5-1.0.1b0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:37,963 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/c9/60/9191d3f3731db61b6ce1da53a13b477c8227d7e94098e084f57147e7a347/pyslow5-1.0.1b0-cp35-cp35m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:37,963 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/e9/ec/f55a306a7ef3e43f0767e1c7ab3c0a9d958217114ca4e1b717cf6e6de661/pyslow5-1.0.1b0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:37,963 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/5e/61/07d1d57a6dd765e11f0012d69c3db83356e8f643bd8ee8d9b59809e52d8f/pyslow5-1.0.1b0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:37,964 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/03/db/b2c9f505d1b0f356959523d9f8d9cc569cab5751e80579d54932d0134d82/pyslow5-1.0.1b0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:37,964 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/fc/3c/910414b4d79718d4b9318fa617d5a74a58082b98e5bf8c63ede0cbce9fc5/pyslow5-1.0.1b0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:37,965 Found link https://files.pythonhosted.org/packages/9c/e4/60b7418bbd72939ed1e3ab3f3672901a876205ae27d2f4aa54a0a5d09411/pyslow5-1.0.1b0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.0.1b0 2023-08-12T08:48:37,965 Found link https://files.pythonhosted.org/packages/96/80/ef430871b57cb97e2ab2449140fd00deec6cd9e8c71249676d561a45862a/pyslow5-1.1.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.1.0 2023-08-12T08:48:37,966 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyslow5/ 2023-08-12T08:48:37,966 Getting page https://www.piwheels.org/simple/pyslow5/ 2023-08-12T08:48:37,967 Found index url https://www.piwheels.org/simple/ 2023-08-12T08:48:38,136 Fetched page https://www.piwheels.org/simple/pyslow5/ as text/html 2023-08-12T08:48:38,154 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-1.0.1b0-cp39-cp39-linux_armv7l.whl#sha256=32560d3b178fc78e947cb1bcd25273b22467ec9838addf72b46d6fa3b984bf3f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,155 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-1.0.1b0-cp39-cp39-linux_armv6l.whl#sha256=32560d3b178fc78e947cb1bcd25273b22467ec9838addf72b46d6fa3b984bf3f (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,155 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=a0c0b00c4ca00442637b750625464fa24d09a80563ad1125a45ff8feb056f9dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,155 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=a0c0b00c4ca00442637b750625464fa24d09a80563ad1125a45ff8feb056f9dd (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,155 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=f383d1548857739444d3d333a5d005ebd76f5645976aed71605ec802f0a1ada9 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,155 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=f383d1548857739444d3d333a5d005ebd76f5645976aed71605ec802f0a1ada9 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,156 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=d3efcfac07d3103aab58ed7dc52030d3a1ada47728b32f21461b717e3a26cc72 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,156 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=d3efcfac07d3103aab58ed7dc52030d3a1ada47728b32f21461b717e3a26cc72 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,156 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=1e582c37bffe901915b00757cda95859ff3c24c60d90916ac6a103925540be95 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,156 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=1e582c37bffe901915b00757cda95859ff3c24c60d90916ac6a103925540be95 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,157 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=f4672e999f863cd18da1b7273fe502b7fccad27e1018c6cad013e633b265bb8e (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,157 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=f4672e999f863cd18da1b7273fe502b7fccad27e1018c6cad013e633b265bb8e (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,157 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=afc13578684e6eba45f682b384a06806f8a646379b514376af0a825d2599aa6b (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,157 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=afc13578684e6eba45f682b384a06806f8a646379b514376af0a825d2599aa6b (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,157 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.7.0-cp39-cp39-linux_armv7l.whl#sha256=464c8b4669d16487be43b89b666068a10d9a6b842e2a7c2457a40543926505b2 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,158 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.7.0-cp39-cp39-linux_armv6l.whl#sha256=464c8b4669d16487be43b89b666068a10d9a6b842e2a7c2457a40543926505b2 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,158 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.7.0-cp37-cp37m-linux_armv7l.whl#sha256=c191c5bb792560ba91f6b1b4b3449502923ca0ea2ed811c4e7a6fc1e024d65e1 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,158 Skipping link: No binaries permitted for pyslow5: 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https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv7l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,167 Skipping link: No binaries permitted for pyslow5: https://www.piwheels.org/simple/pyslow5/pyslow5-0.2.0a1-cp35-cp35m-linux_armv6l.whl#sha256=778a99e023f739e757f3a8ac054aaf245b3c3855b3781ba5f9f17403f1f2f323 (from https://www.piwheels.org/simple/pyslow5/) (requires-python:>=3.4.3) 2023-08-12T08:48:38,167 Skipping link: not a file: https://www.piwheels.org/simple/pyslow5/ 2023-08-12T08:48:38,167 Skipping link: not a file: https://pypi.org/simple/pyslow5/ 2023-08-12T08:48:38,186 Given no hashes to check 1 links for project 'pyslow5': discarding no candidates 2023-08-12T08:48:38,203 Collecting pyslow5==1.1.0 2023-08-12T08:48:38,205 Created temporary directory: /tmp/pip-unpack-qkbe2qeb 2023-08-12T08:48:38,252 Downloading pyslow5-1.1.0.tar.gz (550 kB) 2023-08-12T08:48:38,635 Added pyslow5==1.1.0 from https://files.pythonhosted.org/packages/96/80/ef430871b57cb97e2ab2449140fd00deec6cd9e8c71249676d561a45862a/pyslow5-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-e7qx8yu8' 2023-08-12T08:48:38,637 Running setup.py (path:/tmp/pip-wheel-idgghc6o/pyslow5_d7731f0f26f14f01bd916ed3b81bed1c/setup.py) egg_info for package pyslow5 2023-08-12T08:48:38,638 Created temporary directory: /tmp/pip-pip-egg-info-_7aal_8y 2023-08-12T08:48:38,638 Preparing metadata (setup.py): started 2023-08-12T08:48:38,639 Running command python setup.py egg_info 2023-08-12T08:48:39,898 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-08-12T08:48:39,899 !! 2023-08-12T08:48:39,899 ******************************************************************************** 2023-08-12T08:48:39,899 Requirements should be satisfied by a PEP 517 installer. 2023-08-12T08:48:39,899 If you are using pip, you can try `pip install --use-pep517`. 2023-08-12T08:48:39,899 ******************************************************************************** 2023-08-12T08:48:39,900 !! 2023-08-12T08:48:39,900 dist.fetch_build_eggs(dist.setup_requires) 2023-08-12T08:48:40,020 running egg_info 2023-08-12T08:48:40,022 creating /tmp/pip-pip-egg-info-_7aal_8y/pyslow5.egg-info 2023-08-12T08:48:40,049 writing /tmp/pip-pip-egg-info-_7aal_8y/pyslow5.egg-info/PKG-INFO 2023-08-12T08:48:40,052 writing dependency_links to /tmp/pip-pip-egg-info-_7aal_8y/pyslow5.egg-info/dependency_links.txt 2023-08-12T08:48:40,054 writing requirements to /tmp/pip-pip-egg-info-_7aal_8y/pyslow5.egg-info/requires.txt 2023-08-12T08:48:40,055 writing top-level names to /tmp/pip-pip-egg-info-_7aal_8y/pyslow5.egg-info/top_level.txt 2023-08-12T08:48:40,056 writing manifest file '/tmp/pip-pip-egg-info-_7aal_8y/pyslow5.egg-info/SOURCES.txt' 2023-08-12T08:48:40,112 reading manifest file '/tmp/pip-pip-egg-info-_7aal_8y/pyslow5.egg-info/SOURCES.txt' 2023-08-12T08:48:40,113 reading manifest template 'MANIFEST.in' 2023-08-12T08:48:40,133 writing manifest file '/tmp/pip-pip-egg-info-_7aal_8y/pyslow5.egg-info/SOURCES.txt' 2023-08-12T08:48:40,246 Preparing metadata (setup.py): finished with status 'done' 2023-08-12T08:48:40,252 Source in /tmp/pip-wheel-idgghc6o/pyslow5_d7731f0f26f14f01bd916ed3b81bed1c has version 1.1.0, which satisfies requirement pyslow5==1.1.0 from https://files.pythonhosted.org/packages/96/80/ef430871b57cb97e2ab2449140fd00deec6cd9e8c71249676d561a45862a/pyslow5-1.1.0.tar.gz 2023-08-12T08:48:40,253 Removed pyslow5==1.1.0 from https://files.pythonhosted.org/packages/96/80/ef430871b57cb97e2ab2449140fd00deec6cd9e8c71249676d561a45862a/pyslow5-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-e7qx8yu8' 2023-08-12T08:48:40,261 Created temporary directory: /tmp/pip-unpack-majh49xt 2023-08-12T08:48:40,262 Building wheels for collected packages: pyslow5 2023-08-12T08:48:40,266 Created temporary directory: /tmp/pip-wheel-czk4o45r 2023-08-12T08:48:40,267 Building wheel for pyslow5 (setup.py): started 2023-08-12T08:48:40,267 Destination directory: /tmp/pip-wheel-czk4o45r 2023-08-12T08:48:40,268 Running command python setup.py bdist_wheel 2023-08-12T08:48:41,386 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-08-12T08:48:41,386 !! 2023-08-12T08:48:41,386 ******************************************************************************** 2023-08-12T08:48:41,387 Requirements should be satisfied by a PEP 517 installer. 2023-08-12T08:48:41,387 If you are using pip, you can try `pip install --use-pep517`. 2023-08-12T08:48:41,387 ******************************************************************************** 2023-08-12T08:48:41,387 !! 2023-08-12T08:48:41,387 dist.fetch_build_eggs(dist.setup_requires) 2023-08-12T08:48:41,545 running bdist_wheel 2023-08-12T08:48:41,623 running build 2023-08-12T08:48:41,623 running build_ext 2023-08-12T08:48:41,629 cythoning python/pyslow5.pyx to python/pyslow5.c 2023-08-12T08:48:48,731 building 'pyslow5' extension 2023-08-12T08:48:48,732 creating build 2023-08-12T08:48:48,733 creating build/temp.linux-armv7l-cpython-39 2023-08-12T08:48:48,734 creating build/temp.linux-armv7l-cpython-39/python 2023-08-12T08:48:48,735 creating build/temp.linux-armv7l-cpython-39/src 2023-08-12T08:48:48,736 creating build/temp.linux-armv7l-cpython-39/thirdparty 2023-08-12T08:48:48,737 creating build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte 2023-08-12T08:48:48,738 creating build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src 2023-08-12T08:48:48,740 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c python/pyslow5.c -o build/temp.linux-armv7l-cpython-39/python/pyslow5.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:48:49,140 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-08-12T08:48:49,140 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-12T08:48:49,141 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-12T08:48:49,141 from python/pyslow5.c:749: 2023-08-12T08:48:49,141 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-12T08:48:49,141 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-12T08:48:49,142 | ^~~~~~~ 2023-08-12T08:50:15,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5.c -o build/temp.linux-armv7l-cpython-39/src/slow5.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:50:15,277 src/slow5.c: In function ‘slow5_init’: 2023-08-12T08:50:15,278 src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-12T08:50:15,279 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { 2023-08-12T08:50:15,279 | ^~ 2023-08-12T08:50:15,280 src/slow5.c: In function ‘slow5_init_empty’: 2023-08-12T08:50:15,280 src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-12T08:50:15,281 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { 2023-08-12T08:50:15,281 | ^~ 2023-08-12T08:50:15,334 src/slow5.c: In function ‘slow5_get_mem’: 2023-08-12T08:50:15,335 src/slow5.c:2465:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-12T08:50:15,336 2465 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { 2023-08-12T08:50:15,336 | ^~ 2023-08-12T08:50:15,337 In file included from include/slow5/slow5.h:55, 2023-08-12T08:50:15,338 from src/slow5.c:40: 2023-08-12T08:50:15,338 include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 2023-08-12T08:50:15,338 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " 2023-08-12T08:50:15,338 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-12T08:50:15,338 include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 2023-08-12T08:50:15,338 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ 2023-08-12T08:50:15,339 | ^~~~~~~~~~~~~~~~~~ 2023-08-12T08:50:15,339 src/slow5.c:2466:9: note: in expansion of macro ‘SLOW5_ERROR’ 2023-08-12T08:50:15,339 2466 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", 2023-08-12T08:50:15,339 | ^~~~~~~~~~~ 2023-08-12T08:50:15,354 src/slow5.c: In function ‘slow5_rec_aux_parse’: 2023-08-12T08:50:15,355 include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2023-08-12T08:50:15,355 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " 2023-08-12T08:50:15,355 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-12T08:50:15,356 include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 2023-08-12T08:50:15,356 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ 2023-08-12T08:50:15,356 | ^~~~~~~~~~~~~~~~~~ 2023-08-12T08:50:15,356 src/slow5.c:3088:17: note: in expansion of macro ‘SLOW5_ERROR’ 2023-08-12T08:50:15,356 3088 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); 2023-08-12T08:50:15,356 | ^~~~~~~~~~~ 2023-08-12T08:50:24,669 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_idx.c -o build/temp.linux-armv7l-cpython-39/src/slow5_idx.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:50:24,833 src/slow5_idx.c: In function ‘slow5_idx_build’: 2023-08-12T08:50:24,834 src/slow5_idx.c:180:20: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-12T08:50:24,834 180 | if(curr_offset == -1){ 2023-08-12T08:50:24,834 | ^~ 2023-08-12T08:50:24,835 src/slow5_idx.c:207:19: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-12T08:50:24,835 207 | if(offset == -1){ 2023-08-12T08:50:24,835 | ^~ 2023-08-12T08:50:24,835 src/slow5_idx.c:233:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-12T08:50:24,836 233 | if(offset == -1){ 2023-08-12T08:50:24,836 | ^~ 2023-08-12T08:50:25,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_misc.c -o build/temp.linux-armv7l-cpython-39/src/slow5_misc.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:50:26,261 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_mt.c -o build/temp.linux-armv7l-cpython-39/src/slow5_mt.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:50:26,895 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c src/slow5_press.c -o build/temp.linux-armv7l-cpython-39/src/slow5_press.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:50:27,065 src/slow5_press.c: In function ‘slow5_fwrite_compress’: 2023-08-12T08:50:27,066 src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-12T08:50:27,066 558 | if (bytes != size * nmemb || ferror(fp)) { 2023-08-12T08:50:27,066 | ^~ 2023-08-12T08:50:27,067 src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-12T08:50:27,067 559 | if (bytes != size * nmemb) { 2023-08-12T08:50:27,067 | ^~ 2023-08-12T08:50:27,069 src/slow5_press.c: In function ‘slow5_pread_depress_solo’: 2023-08-12T08:50:27,069 src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-12T08:50:27,069 686 | if ((ret = pread(fd, raw, count, offset)) != count) { 2023-08-12T08:50:27,069 | ^~ 2023-08-12T08:50:28,034 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_decode.c -o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_decode.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:50:28,494 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_encode.c -o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_encode.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:50:28,976 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.9 -c thirdparty/streamvbyte/src/streamvbyte_zigzag.c -o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2023-08-12T08:50:29,129 creating build/lib.linux-armv7l-cpython-39 2023-08-12T08:50:29,130 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/python/pyslow5.o build/temp.linux-armv7l-cpython-39/src/slow5.o build/temp.linux-armv7l-cpython-39/src/slow5_idx.o build/temp.linux-armv7l-cpython-39/src/slow5_misc.o build/temp.linux-armv7l-cpython-39/src/slow5_mt.o build/temp.linux-armv7l-cpython-39/src/slow5_press.o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_decode.o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_encode.o build/temp.linux-armv7l-cpython-39/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -L. -L/usr/lib -lm -lz -o build/lib.linux-armv7l-cpython-39/pyslow5.cpython-39-arm-linux-gnueabihf.so 2023-08-12T08:50:29,558 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-08-12T08:50:29,559 !! 2023-08-12T08:50:29,559 ******************************************************************************** 2023-08-12T08:50:29,559 Please avoid running ``setup.py`` directly. 2023-08-12T08:50:29,560 Instead, use pypa/build, pypa/installer, pypa/build or 2023-08-12T08:50:29,560 other standards-based tools. 2023-08-12T08:50:29,560 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-08-12T08:50:29,560 ******************************************************************************** 2023-08-12T08:50:29,561 !! 2023-08-12T08:50:29,561 self.initialize_options() 2023-08-12T08:50:29,600 installing to build/bdist.linux-armv7l/wheel 2023-08-12T08:50:29,601 running install 2023-08-12T08:50:29,639 running install_lib 2023-08-12T08:50:29,672 creating build/bdist.linux-armv7l 2023-08-12T08:50:29,672 creating build/bdist.linux-armv7l/wheel 2023-08-12T08:50:29,673 copying build/lib.linux-armv7l-cpython-39/pyslow5.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-08-12T08:50:29,744 running install_egg_info 2023-08-12T08:50:29,798 running egg_info 2023-08-12T08:50:29,823 writing pyslow5.egg-info/PKG-INFO 2023-08-12T08:50:29,826 writing dependency_links to pyslow5.egg-info/dependency_links.txt 2023-08-12T08:50:29,828 writing requirements to pyslow5.egg-info/requires.txt 2023-08-12T08:50:29,830 writing top-level names to pyslow5.egg-info/top_level.txt 2023-08-12T08:50:29,859 reading manifest file 'pyslow5.egg-info/SOURCES.txt' 2023-08-12T08:50:29,873 reading manifest template 'MANIFEST.in' 2023-08-12T08:50:29,890 writing manifest file 'pyslow5.egg-info/SOURCES.txt' 2023-08-12T08:50:29,891 Copying pyslow5.egg-info to build/bdist.linux-armv7l/wheel/pyslow5-1.1.0-py3.9.egg-info 2023-08-12T08:50:29,902 running install_scripts 2023-08-12T08:50:29,957 creating build/bdist.linux-armv7l/wheel/pyslow5-1.1.0.dist-info/WHEEL 2023-08-12T08:50:29,960 creating '/tmp/pip-wheel-czk4o45r/pyslow5-1.1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-12T08:50:30,846 adding 'pyslow5.cpython-39-arm-linux-gnueabihf.so' 2023-08-12T08:50:30,878 adding 'pyslow5-1.1.0.dist-info/METADATA' 2023-08-12T08:50:30,879 adding 'pyslow5-1.1.0.dist-info/WHEEL' 2023-08-12T08:50:30,880 adding 'pyslow5-1.1.0.dist-info/top_level.txt' 2023-08-12T08:50:30,881 adding 'pyslow5-1.1.0.dist-info/RECORD' 2023-08-12T08:50:30,901 removing build/bdist.linux-armv7l/wheel 2023-08-12T08:50:31,498 Building wheel for pyslow5 (setup.py): finished with status 'done' 2023-08-12T08:50:31,519 Created wheel for pyslow5: filename=pyslow5-1.1.0-cp39-cp39-linux_armv7l.whl size=1681839 sha256=7962c023548d39a5a1f82046f74ca704d9c069c967e758a027eec6fb6181ea8f 2023-08-12T08:50:31,520 Stored in directory: /tmp/pip-ephem-wheel-cache-tmyjhu7h/wheels/88/cc/ab/0dafbed73b52af23c834ddcf30ca18e4572397854764e908e5 2023-08-12T08:50:31,534 Successfully built pyslow5 2023-08-12T08:50:31,587 Removed build tracker: '/tmp/pip-build-tracker-e7qx8yu8'