2023-08-12T12:47:06,630 Created temporary directory: /tmp/pip-build-tracker-egkb7ajc 2023-08-12T12:47:06,631 Initialized build tracking at /tmp/pip-build-tracker-egkb7ajc 2023-08-12T12:47:06,632 Created build tracker: /tmp/pip-build-tracker-egkb7ajc 2023-08-12T12:47:06,632 Entered build tracker: /tmp/pip-build-tracker-egkb7ajc 2023-08-12T12:47:06,632 Created temporary directory: /tmp/pip-wheel-sopf7cl8 2023-08-12T12:47:06,635 Created temporary directory: /tmp/pip-ephem-wheel-cache-xs660xt7 2023-08-12T12:47:06,658 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-12T12:47:06,662 2 location(s) to search for versions of pyobo: 2023-08-12T12:47:06,662 * https://pypi.org/simple/pyobo/ 2023-08-12T12:47:06,662 * https://www.piwheels.org/simple/pyobo/ 2023-08-12T12:47:06,662 Fetching project page and analyzing links: https://pypi.org/simple/pyobo/ 2023-08-12T12:47:06,662 Getting page https://pypi.org/simple/pyobo/ 2023-08-12T12:47:06,664 Found index url https://pypi.org/simple/ 2023-08-12T12:47:06,715 Fetched page https://pypi.org/simple/pyobo/ as application/vnd.pypi.simple.v1+json 2023-08-12T12:47:06,736 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/98/5e/ad7ea3dab1d88562b4ccf8873bfab9c49117343adbead05aff3d31ab6bc9/pyobo-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6) 2023-08-12T12:47:06,736 Found link https://files.pythonhosted.org/packages/9e/97/87e030c2c9e7af6ad6efae9615fae22e55782f97232113cbde014685bd5d/pyobo-0.0.1.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.0.1 2023-08-12T12:47:06,737 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/ae/3c/a49046cd777ecde3b93aa287595d97889b19f25a27ff3262e07303477629/pyobo-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,737 Found link https://files.pythonhosted.org/packages/e4/65/63519297121c87f4f86f99444043734f2eaebe083541e588475f77622284/pyobo-0.0.2.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.2 2023-08-12T12:47:06,738 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/30/c1/4c7e619de5335d05a503530dbff450dbb3ba10b2e50775308f23edc62dc4/pyobo-0.0.3-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,738 Found link https://files.pythonhosted.org/packages/6d/60/0378905c3a343db9d89179bcb84f0c8d29387d7c322fab2aa73f7b4734d2/pyobo-0.0.3.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.3 2023-08-12T12:47:06,738 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/b6/b3/3ce0c93c64fbc62a618c2a84892503ac438e2e4008c58c737401b1fac69c/pyobo-0.0.4-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,739 Found link https://files.pythonhosted.org/packages/3a/77/399811b835d969bfb9ca11665192feb3d77ccdc814df1cb3a55de8ee6703/pyobo-0.0.4.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.4 2023-08-12T12:47:06,739 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/75/bc/9494351b989734fff9c48c8f78d8588c1cbd45a30504ce0db3bf8c4d24f3/pyobo-0.0.5-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,740 Found link https://files.pythonhosted.org/packages/d8/4d/6a4352fbdd9826bae90c9745ad7e2a2dda0982b266e5ebad41c3a68259a0/pyobo-0.0.5.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.5 2023-08-12T12:47:06,740 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/73/45/0b78d73ff6f0b3a2f45db53d02d2761f4785b7abc3894b01859061f24313/pyobo-0.0.6-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,740 Found link https://files.pythonhosted.org/packages/61/98/486dadecc83fbbd5d49648dd09a0d05d91501f4a7be461ba37a37fd711b6/pyobo-0.0.6.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.6 2023-08-12T12:47:06,741 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/d4/f1/e5fc418924c64b351b73a1ab496e98530033d285fd2bba61a31e17819833/pyobo-0.0.7-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,741 Found link https://files.pythonhosted.org/packages/7f/43/adfd5d951cbbf3a90f721a031d0236de5ed4eafa9986e070243f21708c27/pyobo-0.0.7.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.0.7 2023-08-12T12:47:06,742 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/f1/64/a51f3a9afc7a8b48df5e12260a97147770c7a01cde9bea622ec1542b679b/pyobo-0.1.0-py3-none-any.whl (from 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https://files.pythonhosted.org/packages/c8/c9/40d1461f8009f21f300a120cbe42c85f2749757140d16195517d53506301/pyobo-0.1.2-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,744 Found link https://files.pythonhosted.org/packages/b7/57/8d5eda3353620cfe3984ca65d32a2b6d4d445412224c470991ecc76ed04a/pyobo-0.1.2.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.2 2023-08-12T12:47:06,744 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/35/87/944b0f8de93ee584e8a20aa2ddc5b354ef7c5fa92e559e2f3cc8a07a2448/pyobo-0.1.3-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,744 Found link https://files.pythonhosted.org/packages/55/54/ecd223332080bbca4d4944ca95bd656c3dddecac2045c6f1f6a4545ea178/pyobo-0.1.3.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.1.3 2023-08-12T12:47:06,745 Skipping link: No binaries 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link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/74/86/85176fa9587fb42a17fa7d942fd3e7513228838d8da1b8ccd4d92b61c495/pyobo-0.2.2-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,747 Found link https://files.pythonhosted.org/packages/43/15/9e745fbc81bf514d1ebb5d75cf0a9c413e85668d29dc198617511135842a/pyobo-0.2.2.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.2 2023-08-12T12:47:06,747 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/52/b9/c6ac012e8f2ff75cb695ed9fa24b2b6e5627c4ad5e120b81e439309799e9/pyobo-0.2.3-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,747 Found link https://files.pythonhosted.org/packages/c1/c6/3c8f9ddbd162dde3f32dcce31cf3874cb2252b4fd800547410234f1dcfd1/pyobo-0.2.3.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.3 2023-08-12T12:47:06,748 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/60/fb/68a66841d481f2c965ec1fbe5e5d51f815ad0e63b7dbeb697dc8f8c6bde8/pyobo-0.2.4-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,748 Found link https://files.pythonhosted.org/packages/17/72/9da15b783fda89d16e6b4e1b3002b1edef6a65258e8fb639609c0d3dfb41/pyobo-0.2.4.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.4 2023-08-12T12:47:06,748 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/03/40/0132f29aa34cdc8d3d625017621979f0cc783ce9f80d8cb04370417c6eb3/pyobo-0.2.5-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,749 Found link https://files.pythonhosted.org/packages/52/97/2812dd52233d4de0eb8da355bfab57f4dcd281edaaac1ef7a5d5bd0af83d/pyobo-0.2.5.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.5 2023-08-12T12:47:06,749 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/c0/b4/e473bd4bc0fe07387b7bdcc649a88c8908e974a7fc41d4258ca53750331f/pyobo-0.2.6-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,750 Found link https://files.pythonhosted.org/packages/f5/4d/6921ae12969e143544b82fe15b375d98d167e1970c4002e305acb9d647b6/pyobo-0.2.6.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7), version: 0.2.6 2023-08-12T12:47:06,750 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/a3/f7/e1c7b633b29ef23607a28ebb86184446a8de21406790918b800d975ff4f6/pyobo-0.2.7-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:06,750 Found link https://files.pythonhosted.org/packages/fc/ca/ba5a4873350af8728238e3b4f7d20b46db85ebda7e7d4d50121ec2b9b4ab/pyobo-0.2.7.tar.gz (from 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2023-08-12T12:47:06,753 Found link https://files.pythonhosted.org/packages/df/ff/20c75c9c073a565bd8c5edfbcf96b6281f0cff8cb94005395edfc247f709/pyobo-0.2.11.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.2.11 2023-08-12T12:47:06,754 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/b6/c2/fbdcfa4cf0d2b0923a930482f22510e768a9b41a42b527c7081237d1546a/pyobo-0.2.12-py3-none-any.whl (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6) 2023-08-12T12:47:06,754 Found link https://files.pythonhosted.org/packages/e0/58/d7f1e300032ce9963b260831fca7ad2ea87ba866eeb4c574484ac68f61db/pyobo-0.2.12.tar.gz (from https://pypi.org/simple/pyobo/) (requires-python:>=3.6), version: 0.2.12 2023-08-12T12:47:06,754 Skipping link: No binaries permitted for pyobo: https://files.pythonhosted.org/packages/fb/f2/7323ad8ebaa183b9c41a9dd3d3661cbc489a0c467cdc9b82a7ec4eee4972/pyobo-0.2.13-py3-none-any.whl (from https://pypi.org/simple/pyobo/) 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https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:07,021 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.4-py3-none-any.whl#sha256=c85b32484262f90bffa2fc2e8ff832b044ec28aa7bee288c54f5ee28b898de5b (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:07,021 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.3-py3-none-any.whl#sha256=ca6f721336e89df9ff8e2b71ea53bfa443d58d60b2d5997b3ed771f23b35b7b9 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:07,021 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.2-py3-none-any.whl#sha256=9c2d580cffab8a8ca4ae56b615ddb82ed18a1d7e174818557da52dba258eaa46 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.7) 2023-08-12T12:47:07,021 Skipping link: No binaries permitted for pyobo: https://www.piwheels.org/simple/pyobo/pyobo-0.0.1-py3-none-any.whl#sha256=fa8b0bd5daff8df2ad48a133514a2b5fee29f18f806465ef49f7cc12042c4e51 (from https://www.piwheels.org/simple/pyobo/) (requires-python:>=3.6) 2023-08-12T12:47:07,022 Skipping link: not a file: https://www.piwheels.org/simple/pyobo/ 2023-08-12T12:47:07,022 Skipping link: not a file: https://pypi.org/simple/pyobo/ 2023-08-12T12:47:07,047 Given no hashes to check 1 links for project 'pyobo': discarding no candidates 2023-08-12T12:47:07,065 Collecting pyobo==0.10.0 2023-08-12T12:47:07,067 Created temporary directory: /tmp/pip-unpack-5avsr_kj 2023-08-12T12:47:07,356 Downloading pyobo-0.10.0.tar.gz (23.1 MB) 2023-08-12T12:47:42,701 Added pyobo==0.10.0 from https://files.pythonhosted.org/packages/c1/c2/3eb1c9fba5b9f729e281518768b8f3a1121dad8b90ba32819f582834ce5c/pyobo-0.10.0.tar.gz to build tracker '/tmp/pip-build-tracker-egkb7ajc' 2023-08-12T12:47:42,705 Created temporary directory: /tmp/pip-build-env-1795rubw 2023-08-12T12:47:42,714 Installing build dependencies: started 2023-08-12T12:47:42,715 Running command pip subprocess to install build dependencies 2023-08-12T12:47:43,871 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-08-12T12:47:44,230 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-12T12:47:45,875 Collecting setuptools 2023-08-12T12:47:45,939 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-08-12T12:47:46,195 Collecting wheel 2023-08-12T12:47:46,213 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.1-py3-none-any.whl (64 kB) 2023-08-12T12:47:47,989 Installing collected packages: wheel, setuptools 2023-08-12T12:47:48,214 Creating /tmp/pip-build-env-1795rubw/overlay/bin 2023-08-12T12:47:48,216 changing mode of /tmp/pip-build-env-1795rubw/overlay/bin/wheel to 755 2023-08-12T12:47:50,309 Successfully installed setuptools-68.0.0 wheel-0.41.1 2023-08-12T12:47:50,321 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-12T12:47:50,321 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-12T12:47:50,574 Installing build dependencies: finished with status 'done' 2023-08-12T12:47:50,580 Getting requirements to build wheel: started 2023-08-12T12:47:50,581 Running command Getting requirements to build wheel 2023-08-12T12:47:51,320 running egg_info 2023-08-12T12:47:51,324 writing src/pyobo.egg-info/PKG-INFO 2023-08-12T12:47:51,327 writing dependency_links to src/pyobo.egg-info/dependency_links.txt 2023-08-12T12:47:51,330 writing entry points to src/pyobo.egg-info/entry_points.txt 2023-08-12T12:47:51,332 writing requirements to src/pyobo.egg-info/requires.txt 2023-08-12T12:47:51,333 writing top-level names to src/pyobo.egg-info/top_level.txt 2023-08-12T12:47:51,368 reading manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-08-12T12:47:51,387 reading manifest template 'MANIFEST.in' 2023-08-12T12:47:51,403 no previously-included directories found matching 'benchmarking' 2023-08-12T12:47:51,404 no previously-included directories found matching 'tests/.pytest_cache' 2023-08-12T12:47:51,480 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-08-12T12:47:51,481 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-08-12T12:47:51,483 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-08-12T12:47:51,484 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-08-12T12:47:51,486 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-08-12T12:47:51,487 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-08-12T12:47:51,488 warning: no previously-included files found matching '.bumpversion.cfg' 2023-08-12T12:47:51,489 warning: no previously-included files found matching 'Dockerfile' 2023-08-12T12:47:51,490 warning: no previously-included files found matching 'docker-compose.yml' 2023-08-12T12:47:51,492 adding license file 'LICENSE' 2023-08-12T12:47:51,507 writing manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-08-12T12:47:51,570 Getting requirements to build wheel: finished with status 'done' 2023-08-12T12:47:51,579 Created temporary directory: /tmp/pip-modern-metadata-1mt6e4g7 2023-08-12T12:47:51,581 Preparing metadata (pyproject.toml): started 2023-08-12T12:47:51,582 Running command Preparing metadata (pyproject.toml) 2023-08-12T12:47:52,169 running dist_info 2023-08-12T12:47:52,189 creating /tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info 2023-08-12T12:47:52,193 writing /tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info/PKG-INFO 2023-08-12T12:47:52,197 writing dependency_links to /tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info/dependency_links.txt 2023-08-12T12:47:52,199 writing entry points to /tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info/entry_points.txt 2023-08-12T12:47:52,201 writing requirements to /tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info/requires.txt 2023-08-12T12:47:52,202 writing top-level names to /tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info/top_level.txt 2023-08-12T12:47:52,203 writing manifest file '/tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info/SOURCES.txt' 2023-08-12T12:47:52,236 reading manifest file '/tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info/SOURCES.txt' 2023-08-12T12:47:52,238 reading manifest template 'MANIFEST.in' 2023-08-12T12:47:52,253 no previously-included directories found matching 'benchmarking' 2023-08-12T12:47:52,254 no previously-included directories found matching 'tests/.pytest_cache' 2023-08-12T12:47:52,255 no previously-included directories found matching 'docs/source/api' 2023-08-12T12:47:52,325 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-08-12T12:47:52,326 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-08-12T12:47:52,327 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-08-12T12:47:52,329 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-08-12T12:47:52,330 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-08-12T12:47:52,331 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-08-12T12:47:52,332 warning: no previously-included files found matching '.bumpversion.cfg' 2023-08-12T12:47:52,332 warning: no previously-included files found matching 'Dockerfile' 2023-08-12T12:47:52,333 warning: no previously-included files found matching 'docker-compose.yml' 2023-08-12T12:47:52,335 adding license file 'LICENSE' 2023-08-12T12:47:52,347 writing manifest file '/tmp/pip-modern-metadata-1mt6e4g7/pyobo.egg-info/SOURCES.txt' 2023-08-12T12:47:52,349 creating '/tmp/pip-modern-metadata-1mt6e4g7/pyobo-0.10.0.dist-info' 2023-08-12T12:47:52,522 Preparing metadata (pyproject.toml): finished with status 'done' 2023-08-12T12:47:52,529 Source in /tmp/pip-wheel-sopf7cl8/pyobo_de460bc0c8a94381b91e1446a6de44e4 has version 0.10.0, which satisfies requirement pyobo==0.10.0 from https://files.pythonhosted.org/packages/c1/c2/3eb1c9fba5b9f729e281518768b8f3a1121dad8b90ba32819f582834ce5c/pyobo-0.10.0.tar.gz 2023-08-12T12:47:52,530 Removed pyobo==0.10.0 from https://files.pythonhosted.org/packages/c1/c2/3eb1c9fba5b9f729e281518768b8f3a1121dad8b90ba32819f582834ce5c/pyobo-0.10.0.tar.gz from build tracker '/tmp/pip-build-tracker-egkb7ajc' 2023-08-12T12:47:52,538 Created temporary directory: /tmp/pip-unpack-nef30nuj 2023-08-12T12:47:52,539 Building wheels for collected packages: pyobo 2023-08-12T12:47:52,543 Created temporary directory: /tmp/pip-wheel-epluet53 2023-08-12T12:47:52,543 Destination directory: /tmp/pip-wheel-epluet53 2023-08-12T12:47:52,545 Building wheel for pyobo (pyproject.toml): started 2023-08-12T12:47:52,546 Running command Building wheel for pyobo (pyproject.toml) 2023-08-12T12:47:53,169 running bdist_wheel 2023-08-12T12:47:53,213 running build 2023-08-12T12:47:53,214 running build_py 2023-08-12T12:47:53,222 creating build 2023-08-12T12:47:53,222 creating build/lib 2023-08-12T12:47:53,223 creating build/lib/pyobo 2023-08-12T12:47:53,224 copying src/pyobo/normalizer.py -> build/lib/pyobo 2023-08-12T12:47:53,226 copying src/pyobo/obographs.py -> build/lib/pyobo 2023-08-12T12:47:53,227 copying src/pyobo/version.py -> build/lib/pyobo 2023-08-12T12:47:53,229 copying src/pyobo/getters.py -> build/lib/pyobo 2023-08-12T12:47:53,231 copying src/pyobo/aws.py -> build/lib/pyobo 2023-08-12T12:47:53,233 copying src/pyobo/mocks.py -> build/lib/pyobo 2023-08-12T12:47:53,235 copying src/pyobo/__init__.py -> build/lib/pyobo 2023-08-12T12:47:53,236 copying src/pyobo/plugins.py -> build/lib/pyobo 2023-08-12T12:47:53,238 copying src/pyobo/__main__.py -> build/lib/pyobo 2023-08-12T12:47:53,239 copying src/pyobo/resource_utils.py -> build/lib/pyobo 2023-08-12T12:47:53,241 copying src/pyobo/identifier_utils.py -> build/lib/pyobo 2023-08-12T12:47:53,243 copying src/pyobo/constants.py -> build/lib/pyobo 2023-08-12T12:47:53,244 copying src/pyobo/gilda_utils.py -> build/lib/pyobo 2023-08-12T12:47:53,246 copying src/pyobo/reader.py -> build/lib/pyobo 2023-08-12T12:47:53,249 creating build/lib/pyobo/ssg 2023-08-12T12:47:53,250 copying src/pyobo/ssg/__init__.py -> build/lib/pyobo/ssg 2023-08-12T12:47:53,253 creating build/lib/pyobo/xrefdb 2023-08-12T12:47:53,254 copying src/pyobo/xrefdb/canonicalizer.py -> build/lib/pyobo/xrefdb 2023-08-12T12:47:53,256 copying src/pyobo/xrefdb/xrefs_pipeline.py -> build/lib/pyobo/xrefdb 2023-08-12T12:47:53,257 copying src/pyobo/xrefdb/__init__.py -> build/lib/pyobo/xrefdb 2023-08-12T12:47:53,259 copying src/pyobo/xrefdb/priority.py -> build/lib/pyobo/xrefdb 2023-08-12T12:47:53,260 copying src/pyobo/xrefdb/bengo.py -> build/lib/pyobo/xrefdb 2023-08-12T12:47:53,264 creating build/lib/pyobo/sources 2023-08-12T12:47:53,265 copying src/pyobo/sources/mirbase_mature.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,267 copying src/pyobo/sources/mirbase_family.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,268 copying src/pyobo/sources/gwascentral_study.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,270 copying src/pyobo/sources/depmap.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,271 copying src/pyobo/sources/icd11.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,273 copying src/pyobo/sources/antibodyregistry.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,275 copying src/pyobo/sources/mirbase_constants.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,276 copying src/pyobo/sources/conso.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,278 copying src/pyobo/sources/mirbase.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,281 copying src/pyobo/sources/ccle.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,283 copying src/pyobo/sources/go.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,284 copying src/pyobo/sources/rhea.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,286 copying src/pyobo/sources/famplex.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,288 copying src/pyobo/sources/pfam_clan.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,289 copying src/pyobo/sources/drugcentral.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,291 copying src/pyobo/sources/itis.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,292 copying src/pyobo/sources/pathbank.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,294 copying src/pyobo/sources/cvx.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,296 copying src/pyobo/sources/reactome.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,298 copying src/pyobo/sources/mgi.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,300 copying src/pyobo/sources/pombase.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,302 copying src/pyobo/sources/pubchem.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,304 copying src/pyobo/sources/npass.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,306 copying src/pyobo/sources/agrovoc.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,307 copying src/pyobo/sources/ncbigene.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,309 copying src/pyobo/sources/pid.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,311 copying src/pyobo/sources/biogrid.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,313 copying src/pyobo/sources/mesh.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,315 copying src/pyobo/sources/gwascentral_phenotype.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,316 copying src/pyobo/sources/wikipathways.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,318 copying src/pyobo/sources/gmt_utils.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,320 copying src/pyobo/sources/expasy.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,322 copying src/pyobo/sources/icd10.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,323 copying src/pyobo/sources/__init__.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,325 copying src/pyobo/sources/drugbank.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,327 copying src/pyobo/sources/cpt.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,329 copying src/pyobo/sources/hgnc.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,331 copying src/pyobo/sources/flybase.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,333 copying src/pyobo/sources/chembl.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,335 copying src/pyobo/sources/chebi.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,336 copying src/pyobo/sources/slm.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,338 copying src/pyobo/sources/zfin.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,340 copying src/pyobo/sources/drugbank_salt.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,342 copying src/pyobo/sources/sgd.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,343 copying src/pyobo/sources/cgnc.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,345 copying src/pyobo/sources/msigdb.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,347 copying src/pyobo/sources/complexportal.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,349 copying src/pyobo/sources/rgd.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,351 copying src/pyobo/sources/interpro.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,354 copying src/pyobo/sources/hgncgenefamily.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,355 copying src/pyobo/sources/icd_utils.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,357 copying src/pyobo/sources/pfam.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,359 copying src/pyobo/sources/utils.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,361 copying src/pyobo/sources/dictybase_gene.py -> build/lib/pyobo/sources 2023-08-12T12:47:53,363 creating build/lib/pyobo/resources 2023-08-12T12:47:53,364 copying src/pyobo/resources/ncbitaxon.py -> build/lib/pyobo/resources 2023-08-12T12:47:53,365 copying src/pyobo/resources/__init__.py -> build/lib/pyobo/resources 2023-08-12T12:47:53,367 copying src/pyobo/resources/ro.py -> build/lib/pyobo/resources 2023-08-12T12:47:53,370 creating build/lib/pyobo/utils 2023-08-12T12:47:53,371 copying src/pyobo/utils/cache.py -> build/lib/pyobo/utils 2023-08-12T12:47:53,372 copying src/pyobo/utils/io.py -> build/lib/pyobo/utils 2023-08-12T12:47:53,375 copying src/pyobo/utils/iter.py -> build/lib/pyobo/utils 2023-08-12T12:47:53,376 copying src/pyobo/utils/__init__.py -> build/lib/pyobo/utils 2023-08-12T12:47:53,378 copying src/pyobo/utils/path.py -> build/lib/pyobo/utils 2023-08-12T12:47:53,380 copying src/pyobo/utils/misc.py -> build/lib/pyobo/utils 2023-08-12T12:47:53,382 copying src/pyobo/utils/ndex_utils.py -> build/lib/pyobo/utils 2023-08-12T12:47:53,384 creating build/lib/pyobo/apps 2023-08-12T12:47:53,385 copying src/pyobo/apps/cli.py -> build/lib/pyobo/apps 2023-08-12T12:47:53,387 copying src/pyobo/apps/__init__.py -> build/lib/pyobo/apps 2023-08-12T12:47:53,389 creating build/lib/pyobo/api 2023-08-12T12:47:53,390 copying src/pyobo/api/typedefs.py -> build/lib/pyobo/api 2023-08-12T12:47:53,392 copying src/pyobo/api/properties.py -> build/lib/pyobo/api 2023-08-12T12:47:53,394 copying src/pyobo/api/species.py -> build/lib/pyobo/api 2023-08-12T12:47:53,396 copying src/pyobo/api/xrefs.py -> build/lib/pyobo/api 2023-08-12T12:47:53,398 copying src/pyobo/api/hierarchy.py -> build/lib/pyobo/api 2023-08-12T12:47:53,401 copying src/pyobo/api/metadata.py -> build/lib/pyobo/api 2023-08-12T12:47:53,403 copying src/pyobo/api/names.py -> build/lib/pyobo/api 2023-08-12T12:47:53,405 copying src/pyobo/api/__init__.py -> build/lib/pyobo/api 2023-08-12T12:47:53,407 copying src/pyobo/api/relations.py -> build/lib/pyobo/api 2023-08-12T12:47:53,409 copying src/pyobo/api/utils.py -> build/lib/pyobo/api 2023-08-12T12:47:53,411 copying src/pyobo/api/alts.py -> build/lib/pyobo/api 2023-08-12T12:47:53,414 creating build/lib/pyobo/struct 2023-08-12T12:47:53,415 copying src/pyobo/struct/typedef.py -> build/lib/pyobo/struct 2023-08-12T12:47:53,418 copying src/pyobo/struct/reference.py -> build/lib/pyobo/struct 2023-08-12T12:47:53,420 copying src/pyobo/struct/__init__.py -> build/lib/pyobo/struct 2023-08-12T12:47:53,422 copying src/pyobo/struct/struct.py -> build/lib/pyobo/struct 2023-08-12T12:47:53,425 copying src/pyobo/struct/utils.py -> build/lib/pyobo/struct 2023-08-12T12:47:53,427 creating build/lib/pyobo/registries 2023-08-12T12:47:53,428 copying src/pyobo/registries/__init__.py -> build/lib/pyobo/registries 2023-08-12T12:47:53,429 copying src/pyobo/registries/metaregistry.py -> build/lib/pyobo/registries 2023-08-12T12:47:53,432 creating build/lib/pyobo/cli 2023-08-12T12:47:53,433 copying src/pyobo/cli/database.py -> build/lib/pyobo/cli 2023-08-12T12:47:53,435 copying src/pyobo/cli/cli.py -> build/lib/pyobo/cli 2023-08-12T12:47:53,437 copying src/pyobo/cli/aws.py -> build/lib/pyobo/cli 2023-08-12T12:47:53,439 copying src/pyobo/cli/__init__.py -> build/lib/pyobo/cli 2023-08-12T12:47:53,440 copying src/pyobo/cli/lookup.py -> build/lib/pyobo/cli 2023-08-12T12:47:53,442 copying src/pyobo/cli/utils.py -> build/lib/pyobo/cli 2023-08-12T12:47:53,445 creating build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,446 copying src/pyobo/xrefdb/sources/biomappings.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,448 copying src/pyobo/xrefdb/sources/famplex.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,450 copying src/pyobo/xrefdb/sources/pubchem.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,452 copying src/pyobo/xrefdb/sources/__init__.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,454 copying src/pyobo/xrefdb/sources/gilda.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,455 copying src/pyobo/xrefdb/sources/wikidata.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,457 copying src/pyobo/xrefdb/sources/ncit.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,459 copying src/pyobo/xrefdb/sources/compath.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,461 copying src/pyobo/xrefdb/sources/intact.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,462 copying src/pyobo/xrefdb/sources/chembl.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,464 copying src/pyobo/xrefdb/sources/cbms2019.py -> build/lib/pyobo/xrefdb/sources 2023-08-12T12:47:53,467 creating build/lib/pyobo/sources/kegg 2023-08-12T12:47:53,467 copying src/pyobo/sources/kegg/genome.py -> build/lib/pyobo/sources/kegg 2023-08-12T12:47:53,469 copying src/pyobo/sources/kegg/pathway.py -> build/lib/pyobo/sources/kegg 2023-08-12T12:47:53,472 copying src/pyobo/sources/kegg/__init__.py -> build/lib/pyobo/sources/kegg 2023-08-12T12:47:53,473 copying src/pyobo/sources/kegg/genes.py -> build/lib/pyobo/sources/kegg 2023-08-12T12:47:53,475 copying src/pyobo/sources/kegg/api.py -> build/lib/pyobo/sources/kegg 2023-08-12T12:47:53,478 creating build/lib/pyobo/sources/uniprot 2023-08-12T12:47:53,479 copying src/pyobo/sources/uniprot/uniprot.py -> build/lib/pyobo/sources/uniprot 2023-08-12T12:47:53,481 copying src/pyobo/sources/uniprot/__init__.py -> build/lib/pyobo/sources/uniprot 2023-08-12T12:47:53,482 copying src/pyobo/sources/uniprot/uniprot_ptm.py -> build/lib/pyobo/sources/uniprot 2023-08-12T12:47:53,485 creating build/lib/pyobo/sources/umls 2023-08-12T12:47:53,485 copying src/pyobo/sources/umls/umls.py -> build/lib/pyobo/sources/umls 2023-08-12T12:47:53,488 copying src/pyobo/sources/umls/__init__.py -> build/lib/pyobo/sources/umls 2023-08-12T12:47:53,489 copying src/pyobo/sources/umls/__main__.py -> build/lib/pyobo/sources/umls 2023-08-12T12:47:53,492 creating build/lib/pyobo/sources/selventa 2023-08-12T12:47:53,493 copying src/pyobo/sources/selventa/sdis.py -> build/lib/pyobo/sources/selventa 2023-08-12T12:47:53,495 copying src/pyobo/sources/selventa/sfam.py -> build/lib/pyobo/sources/selventa 2023-08-12T12:47:53,496 copying src/pyobo/sources/selventa/schem.py -> build/lib/pyobo/sources/selventa 2023-08-12T12:47:53,498 copying src/pyobo/sources/selventa/__init__.py -> build/lib/pyobo/sources/selventa 2023-08-12T12:47:53,499 copying src/pyobo/sources/selventa/scomp.py -> build/lib/pyobo/sources/selventa 2023-08-12T12:47:53,502 creating build/lib/pyobo/apps/mapper 2023-08-12T12:47:53,503 copying src/pyobo/apps/mapper/mapper.py -> build/lib/pyobo/apps/mapper 2023-08-12T12:47:53,505 copying src/pyobo/apps/mapper/cli.py -> build/lib/pyobo/apps/mapper 2023-08-12T12:47:53,507 copying src/pyobo/apps/mapper/__init__.py -> build/lib/pyobo/apps/mapper 2023-08-12T12:47:53,508 copying src/pyobo/apps/mapper/__main__.py -> build/lib/pyobo/apps/mapper 2023-08-12T12:47:53,511 creating build/lib/pyobo/apps/gilda 2023-08-12T12:47:53,511 copying src/pyobo/apps/gilda/cli.py -> build/lib/pyobo/apps/gilda 2023-08-12T12:47:53,513 copying src/pyobo/apps/gilda/__init__.py -> build/lib/pyobo/apps/gilda 2023-08-12T12:47:53,515 copying src/pyobo/apps/gilda/app.py -> build/lib/pyobo/apps/gilda 2023-08-12T12:47:53,517 copying src/pyobo/apps/gilda/__main__.py -> build/lib/pyobo/apps/gilda 2023-08-12T12:47:53,518 running egg_info 2023-08-12T12:47:53,523 writing src/pyobo.egg-info/PKG-INFO 2023-08-12T12:47:53,525 writing dependency_links to src/pyobo.egg-info/dependency_links.txt 2023-08-12T12:47:53,527 writing entry points to src/pyobo.egg-info/entry_points.txt 2023-08-12T12:47:53,529 writing requirements to src/pyobo.egg-info/requires.txt 2023-08-12T12:47:53,530 writing top-level names to src/pyobo.egg-info/top_level.txt 2023-08-12T12:47:53,552 reading manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-08-12T12:47:53,560 reading manifest template 'MANIFEST.in' 2023-08-12T12:47:53,574 no previously-included directories found matching 'benchmarking' 2023-08-12T12:47:53,575 no previously-included directories found matching 'tests/.pytest_cache' 2023-08-12T12:47:53,642 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2023-08-12T12:47:53,644 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2023-08-12T12:47:53,645 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-08-12T12:47:53,647 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2023-08-12T12:47:53,648 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2023-08-12T12:47:53,650 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2023-08-12T12:47:53,651 warning: no previously-included files found matching '.bumpversion.cfg' 2023-08-12T12:47:53,652 warning: no previously-included files found matching 'Dockerfile' 2023-08-12T12:47:53,653 warning: no previously-included files found matching 'docker-compose.yml' 2023-08-12T12:47:53,654 adding license file 'LICENSE' 2023-08-12T12:47:53,669 writing manifest file 'src/pyobo.egg-info/SOURCES.txt' 2023-08-12T12:47:53,675 /tmp/pip-build-env-1795rubw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyobo.apps.gilda.templates' is absent from the `packages` configuration. 2023-08-12T12:47:53,676 !! 2023-08-12T12:47:53,676 ******************************************************************************** 2023-08-12T12:47:53,676 ############################ 2023-08-12T12:47:53,676 # Package would be ignored # 2023-08-12T12:47:53,676 ############################ 2023-08-12T12:47:53,676 Python recognizes 'pyobo.apps.gilda.templates' as an importable package[^1], 2023-08-12T12:47:53,676 but it is absent from setuptools' `packages` configuration. 2023-08-12T12:47:53,677 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-12T12:47:53,677 package, please make sure that 'pyobo.apps.gilda.templates' is explicitly added 2023-08-12T12:47:53,677 to the `packages` configuration field. 2023-08-12T12:47:53,677 Alternatively, you can also rely on setuptools' discovery methods 2023-08-12T12:47:53,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-12T12:47:53,677 instead of `find_packages(...)`/`find:`). 2023-08-12T12:47:53,678 You can read more about "package discovery" on setuptools documentation page: 2023-08-12T12:47:53,678 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-12T12:47:53,678 If you don't want 'pyobo.apps.gilda.templates' to be distributed and are 2023-08-12T12:47:53,678 already explicitly excluding 'pyobo.apps.gilda.templates' via 2023-08-12T12:47:53,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-12T12:47:53,678 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-12T12:47:53,679 combination with a more fine grained `package-data` configuration. 2023-08-12T12:47:53,679 You can read more about "package data files" on setuptools documentation page: 2023-08-12T12:47:53,679 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-12T12:47:53,679 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-12T12:47:53,679 even if it does not contain any `.py` files. 2023-08-12T12:47:53,680 On the other hand, currently there is no concept of package data 2023-08-12T12:47:53,680 directory, all directories are treated like packages. 2023-08-12T12:47:53,680 ******************************************************************************** 2023-08-12T12:47:53,680 !! 2023-08-12T12:47:53,680 check.warn(importable) 2023-08-12T12:47:53,680 /tmp/pip-build-env-1795rubw/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyobo.apps.mapper.templates' is absent from the `packages` configuration. 2023-08-12T12:47:53,680 !! 2023-08-12T12:47:53,681 ******************************************************************************** 2023-08-12T12:47:53,681 ############################ 2023-08-12T12:47:53,681 # Package would be ignored # 2023-08-12T12:47:53,681 ############################ 2023-08-12T12:47:53,681 Python recognizes 'pyobo.apps.mapper.templates' as an importable package[^1], 2023-08-12T12:47:53,681 but it is absent from setuptools' `packages` configuration. 2023-08-12T12:47:53,681 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-12T12:47:53,681 package, please make sure that 'pyobo.apps.mapper.templates' is explicitly added 2023-08-12T12:47:53,682 to the `packages` configuration field. 2023-08-12T12:47:53,682 Alternatively, you can also rely on setuptools' discovery methods 2023-08-12T12:47:53,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-12T12:47:53,682 instead of `find_packages(...)`/`find:`). 2023-08-12T12:47:53,682 You can read more about "package discovery" on setuptools documentation page: 2023-08-12T12:47:53,683 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-12T12:47:53,683 If you don't want 'pyobo.apps.mapper.templates' to be distributed and are 2023-08-12T12:47:53,683 already explicitly excluding 'pyobo.apps.mapper.templates' via 2023-08-12T12:47:53,683 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-12T12:47:53,683 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-12T12:47:53,683 combination with a more fine grained `package-data` configuration. 2023-08-12T12:47:53,684 You can read more about "package data files" on setuptools documentation page: 2023-08-12T12:47:53,684 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-12T12:47:53,684 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-12T12:47:53,685 even if it does not contain any `.py` files. 2023-08-12T12:47:53,685 On the other hand, currently there is no concept of package data 2023-08-12T12:47:53,685 directory, all directories are treated like packages. 2023-08-12T12:47:53,685 ******************************************************************************** 2023-08-12T12:47:53,685 !! 2023-08-12T12:47:53,685 check.warn(importable) 2023-08-12T12:47:53,686 copying src/pyobo/ssg/base.html -> build/lib/pyobo/ssg 2023-08-12T12:47:53,686 copying src/pyobo/ssg/index.html -> build/lib/pyobo/ssg 2023-08-12T12:47:53,686 copying src/pyobo/ssg/term.html -> build/lib/pyobo/ssg 2023-08-12T12:47:53,688 copying src/pyobo/ssg/typedef.html -> build/lib/pyobo/ssg 2023-08-12T12:47:53,690 copying src/pyobo/resources/ncbitaxon.tsv.gz -> build/lib/pyobo/resources 2023-08-12T12:47:54,014 copying src/pyobo/resources/ro.tsv -> build/lib/pyobo/resources 2023-08-12T12:47:54,017 copying src/pyobo/registries/metaregistry.json -> build/lib/pyobo/registries 2023-08-12T12:47:54,020 copying src/pyobo/sources/umls/synonym_types.tsv -> build/lib/pyobo/sources/umls 2023-08-12T12:47:54,022 creating build/lib/pyobo/apps/mapper/templates 2023-08-12T12:47:54,023 copying src/pyobo/apps/mapper/templates/base.html -> build/lib/pyobo/apps/mapper/templates 2023-08-12T12:47:54,025 copying src/pyobo/apps/mapper/templates/mapper_home.html -> build/lib/pyobo/apps/mapper/templates 2023-08-12T12:47:54,027 creating build/lib/pyobo/apps/gilda/templates 2023-08-12T12:47:54,028 copying src/pyobo/apps/gilda/templates/base.html -> build/lib/pyobo/apps/gilda/templates 2023-08-12T12:47:54,030 copying src/pyobo/apps/gilda/templates/home.html -> build/lib/pyobo/apps/gilda/templates 2023-08-12T12:47:54,032 copying src/pyobo/apps/gilda/templates/matches.html -> build/lib/pyobo/apps/gilda/templates 2023-08-12T12:47:54,063 installing to build/bdist.linux-armv7l/wheel 2023-08-12T12:47:54,063 running install 2023-08-12T12:47:54,089 running install_lib 2023-08-12T12:47:54,096 creating build/bdist.linux-armv7l 2023-08-12T12:47:54,096 creating build/bdist.linux-armv7l/wheel 2023-08-12T12:47:54,098 creating build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,099 copying build/lib/pyobo/normalizer.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,102 creating build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-08-12T12:47:54,103 copying build/lib/pyobo/ssg/index.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-08-12T12:47:54,105 copying build/lib/pyobo/ssg/typedef.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-08-12T12:47:54,107 copying build/lib/pyobo/ssg/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-08-12T12:47:54,110 copying build/lib/pyobo/ssg/base.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-08-12T12:47:54,112 copying build/lib/pyobo/ssg/term.html -> build/bdist.linux-armv7l/wheel/pyobo/ssg 2023-08-12T12:47:54,114 creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-08-12T12:47:54,115 creating build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,117 copying build/lib/pyobo/xrefdb/sources/biomappings.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,119 copying build/lib/pyobo/xrefdb/sources/famplex.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,121 copying build/lib/pyobo/xrefdb/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,122 copying build/lib/pyobo/xrefdb/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,124 copying build/lib/pyobo/xrefdb/sources/gilda.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,126 copying build/lib/pyobo/xrefdb/sources/wikidata.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,129 copying build/lib/pyobo/xrefdb/sources/ncit.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,130 copying build/lib/pyobo/xrefdb/sources/compath.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,132 copying build/lib/pyobo/xrefdb/sources/intact.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,134 copying build/lib/pyobo/xrefdb/sources/chembl.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,136 copying build/lib/pyobo/xrefdb/sources/cbms2019.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb/sources 2023-08-12T12:47:54,138 copying build/lib/pyobo/xrefdb/canonicalizer.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-08-12T12:47:54,141 copying build/lib/pyobo/xrefdb/xrefs_pipeline.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-08-12T12:47:54,143 copying build/lib/pyobo/xrefdb/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-08-12T12:47:54,145 copying build/lib/pyobo/xrefdb/priority.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-08-12T12:47:54,146 copying build/lib/pyobo/xrefdb/bengo.py -> build/bdist.linux-armv7l/wheel/pyobo/xrefdb 2023-08-12T12:47:54,150 creating build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,151 copying build/lib/pyobo/sources/mirbase_mature.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,153 copying build/lib/pyobo/sources/mirbase_family.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,155 copying build/lib/pyobo/sources/gwascentral_study.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,157 copying build/lib/pyobo/sources/depmap.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,158 copying build/lib/pyobo/sources/icd11.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,160 copying build/lib/pyobo/sources/antibodyregistry.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,162 copying build/lib/pyobo/sources/mirbase_constants.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,164 copying build/lib/pyobo/sources/conso.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,166 copying build/lib/pyobo/sources/mirbase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,168 copying build/lib/pyobo/sources/ccle.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,170 copying build/lib/pyobo/sources/go.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,172 copying build/lib/pyobo/sources/rhea.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,174 creating build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-08-12T12:47:54,175 copying build/lib/pyobo/sources/kegg/genome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-08-12T12:47:54,177 copying build/lib/pyobo/sources/kegg/pathway.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-08-12T12:47:54,180 copying build/lib/pyobo/sources/kegg/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-08-12T12:47:54,181 copying build/lib/pyobo/sources/kegg/genes.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-08-12T12:47:54,183 copying build/lib/pyobo/sources/kegg/api.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/kegg 2023-08-12T12:47:54,186 copying build/lib/pyobo/sources/famplex.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,188 copying build/lib/pyobo/sources/pfam_clan.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,190 copying build/lib/pyobo/sources/drugcentral.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,192 creating build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-08-12T12:47:54,193 copying build/lib/pyobo/sources/uniprot/uniprot.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-08-12T12:47:54,195 copying build/lib/pyobo/sources/uniprot/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-08-12T12:47:54,197 copying build/lib/pyobo/sources/uniprot/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/uniprot 2023-08-12T12:47:54,198 copying build/lib/pyobo/sources/itis.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,200 copying build/lib/pyobo/sources/pathbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,203 copying build/lib/pyobo/sources/cvx.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,205 creating build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-08-12T12:47:54,206 copying build/lib/pyobo/sources/umls/umls.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-08-12T12:47:54,209 copying build/lib/pyobo/sources/umls/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-08-12T12:47:54,210 copying build/lib/pyobo/sources/umls/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-08-12T12:47:54,212 copying build/lib/pyobo/sources/umls/synonym_types.tsv -> build/bdist.linux-armv7l/wheel/pyobo/sources/umls 2023-08-12T12:47:54,214 copying build/lib/pyobo/sources/reactome.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,217 copying build/lib/pyobo/sources/mgi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,219 copying build/lib/pyobo/sources/pombase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,221 copying build/lib/pyobo/sources/pubchem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,223 copying build/lib/pyobo/sources/npass.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,225 copying build/lib/pyobo/sources/agrovoc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,227 copying build/lib/pyobo/sources/ncbigene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,229 copying build/lib/pyobo/sources/pid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,232 creating build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-08-12T12:47:54,233 copying build/lib/pyobo/sources/selventa/sdis.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-08-12T12:47:54,235 copying build/lib/pyobo/sources/selventa/sfam.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-08-12T12:47:54,237 copying build/lib/pyobo/sources/selventa/schem.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-08-12T12:47:54,239 copying build/lib/pyobo/sources/selventa/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-08-12T12:47:54,241 copying build/lib/pyobo/sources/selventa/scomp.py -> build/bdist.linux-armv7l/wheel/pyobo/sources/selventa 2023-08-12T12:47:54,243 copying build/lib/pyobo/sources/biogrid.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,245 copying build/lib/pyobo/sources/mesh.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,247 copying build/lib/pyobo/sources/gwascentral_phenotype.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,249 copying build/lib/pyobo/sources/wikipathways.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,251 copying build/lib/pyobo/sources/gmt_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,252 copying build/lib/pyobo/sources/expasy.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,255 copying build/lib/pyobo/sources/icd10.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,256 copying build/lib/pyobo/sources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,258 copying build/lib/pyobo/sources/drugbank.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,260 copying build/lib/pyobo/sources/cpt.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,262 copying build/lib/pyobo/sources/hgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,264 copying build/lib/pyobo/sources/flybase.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,266 copying build/lib/pyobo/sources/chembl.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,268 copying build/lib/pyobo/sources/chebi.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,270 copying build/lib/pyobo/sources/slm.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,272 copying build/lib/pyobo/sources/zfin.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,274 copying build/lib/pyobo/sources/drugbank_salt.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,276 copying build/lib/pyobo/sources/sgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,278 copying build/lib/pyobo/sources/cgnc.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,280 copying build/lib/pyobo/sources/msigdb.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,282 copying build/lib/pyobo/sources/complexportal.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,285 copying build/lib/pyobo/sources/rgd.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,287 copying build/lib/pyobo/sources/interpro.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,290 copying build/lib/pyobo/sources/hgncgenefamily.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,292 copying build/lib/pyobo/sources/icd_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,293 copying build/lib/pyobo/sources/pfam.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,295 copying build/lib/pyobo/sources/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,297 copying build/lib/pyobo/sources/dictybase_gene.py -> build/bdist.linux-armv7l/wheel/pyobo/sources 2023-08-12T12:47:54,299 copying build/lib/pyobo/obographs.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,302 creating build/bdist.linux-armv7l/wheel/pyobo/resources 2023-08-12T12:47:54,302 copying build/lib/pyobo/resources/ncbitaxon.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-08-12T12:47:54,305 copying build/lib/pyobo/resources/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-08-12T12:47:54,306 copying build/lib/pyobo/resources/ncbitaxon.tsv.gz -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-08-12T12:47:54,652 copying build/lib/pyobo/resources/ro.tsv -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-08-12T12:47:54,656 copying build/lib/pyobo/resources/ro.py -> build/bdist.linux-armv7l/wheel/pyobo/resources 2023-08-12T12:47:54,658 creating build/bdist.linux-armv7l/wheel/pyobo/utils 2023-08-12T12:47:54,659 copying build/lib/pyobo/utils/cache.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-08-12T12:47:54,662 copying build/lib/pyobo/utils/io.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-08-12T12:47:54,664 copying build/lib/pyobo/utils/iter.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-08-12T12:47:54,667 copying build/lib/pyobo/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-08-12T12:47:54,669 copying build/lib/pyobo/utils/path.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-08-12T12:47:54,671 copying build/lib/pyobo/utils/misc.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-08-12T12:47:54,673 copying build/lib/pyobo/utils/ndex_utils.py -> build/bdist.linux-armv7l/wheel/pyobo/utils 2023-08-12T12:47:54,675 copying build/lib/pyobo/version.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,677 copying build/lib/pyobo/getters.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,680 copying build/lib/pyobo/aws.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,683 copying build/lib/pyobo/mocks.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,685 creating build/bdist.linux-armv7l/wheel/pyobo/apps 2023-08-12T12:47:54,687 creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-08-12T12:47:54,688 copying build/lib/pyobo/apps/mapper/mapper.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-08-12T12:47:54,691 creating build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-08-12T12:47:54,693 copying build/lib/pyobo/apps/mapper/templates/mapper_home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-08-12T12:47:54,695 copying build/lib/pyobo/apps/mapper/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper/templates 2023-08-12T12:47:54,697 copying build/lib/pyobo/apps/mapper/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-08-12T12:47:54,699 copying build/lib/pyobo/apps/mapper/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-08-12T12:47:54,702 copying build/lib/pyobo/apps/mapper/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/mapper 2023-08-12T12:47:54,704 copying build/lib/pyobo/apps/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps 2023-08-12T12:47:54,706 creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-08-12T12:47:54,708 creating build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-08-12T12:47:54,709 copying build/lib/pyobo/apps/gilda/templates/home.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-08-12T12:47:54,711 copying build/lib/pyobo/apps/gilda/templates/base.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-08-12T12:47:54,713 copying build/lib/pyobo/apps/gilda/templates/matches.html -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda/templates 2023-08-12T12:47:54,715 copying build/lib/pyobo/apps/gilda/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-08-12T12:47:54,717 copying build/lib/pyobo/apps/gilda/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-08-12T12:47:54,720 copying build/lib/pyobo/apps/gilda/app.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-08-12T12:47:54,722 copying build/lib/pyobo/apps/gilda/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps/gilda 2023-08-12T12:47:54,724 copying build/lib/pyobo/apps/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/apps 2023-08-12T12:47:54,726 copying build/lib/pyobo/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,728 copying build/lib/pyobo/plugins.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,730 creating build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,731 copying build/lib/pyobo/api/typedefs.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,734 copying build/lib/pyobo/api/properties.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,737 copying build/lib/pyobo/api/species.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,739 copying build/lib/pyobo/api/xrefs.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,741 copying build/lib/pyobo/api/hierarchy.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,744 copying build/lib/pyobo/api/metadata.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,746 copying build/lib/pyobo/api/names.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,748 copying build/lib/pyobo/api/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,751 copying build/lib/pyobo/api/relations.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,753 copying build/lib/pyobo/api/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,755 copying build/lib/pyobo/api/alts.py -> build/bdist.linux-armv7l/wheel/pyobo/api 2023-08-12T12:47:54,758 creating build/bdist.linux-armv7l/wheel/pyobo/struct 2023-08-12T12:47:54,759 copying build/lib/pyobo/struct/typedef.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-08-12T12:47:54,763 copying build/lib/pyobo/struct/reference.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-08-12T12:47:54,765 copying build/lib/pyobo/struct/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-08-12T12:47:54,767 copying build/lib/pyobo/struct/struct.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-08-12T12:47:54,771 copying build/lib/pyobo/struct/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/struct 2023-08-12T12:47:54,773 copying build/lib/pyobo/__main__.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,775 copying build/lib/pyobo/resource_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,778 copying build/lib/pyobo/identifier_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,780 creating build/bdist.linux-armv7l/wheel/pyobo/registries 2023-08-12T12:47:54,781 copying build/lib/pyobo/registries/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-08-12T12:47:54,784 copying build/lib/pyobo/registries/metaregistry.py -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-08-12T12:47:54,786 copying build/lib/pyobo/registries/metaregistry.json -> build/bdist.linux-armv7l/wheel/pyobo/registries 2023-08-12T12:47:54,789 copying build/lib/pyobo/constants.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,791 copying build/lib/pyobo/gilda_utils.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,794 copying build/lib/pyobo/reader.py -> build/bdist.linux-armv7l/wheel/pyobo 2023-08-12T12:47:54,797 creating build/bdist.linux-armv7l/wheel/pyobo/cli 2023-08-12T12:47:54,798 copying build/lib/pyobo/cli/database.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-08-12T12:47:54,801 copying build/lib/pyobo/cli/cli.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-08-12T12:47:54,803 copying build/lib/pyobo/cli/aws.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-08-12T12:47:54,806 copying build/lib/pyobo/cli/__init__.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-08-12T12:47:54,808 copying build/lib/pyobo/cli/lookup.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-08-12T12:47:54,810 copying build/lib/pyobo/cli/utils.py -> build/bdist.linux-armv7l/wheel/pyobo/cli 2023-08-12T12:47:54,812 running install_egg_info 2023-08-12T12:47:54,823 Copying src/pyobo.egg-info to build/bdist.linux-armv7l/wheel/pyobo-0.10.0-py3.9.egg-info 2023-08-12T12:47:54,838 running install_scripts 2023-08-12T12:47:54,868 creating build/bdist.linux-armv7l/wheel/pyobo-0.10.0.dist-info/WHEEL 2023-08-12T12:47:54,870 creating '/tmp/pip-wheel-epluet53/.tmp-4mx_jlvu/pyobo-0.10.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-12T12:47:54,873 adding 'pyobo/__init__.py' 2023-08-12T12:47:54,875 adding 'pyobo/__main__.py' 2023-08-12T12:47:54,877 adding 'pyobo/aws.py' 2023-08-12T12:47:54,879 adding 'pyobo/constants.py' 2023-08-12T12:47:54,881 adding 'pyobo/getters.py' 2023-08-12T12:47:54,883 adding 'pyobo/gilda_utils.py' 2023-08-12T12:47:54,886 adding 'pyobo/identifier_utils.py' 2023-08-12T12:47:54,887 adding 'pyobo/mocks.py' 2023-08-12T12:47:54,889 adding 'pyobo/normalizer.py' 2023-08-12T12:47:54,891 adding 'pyobo/obographs.py' 2023-08-12T12:47:54,893 adding 'pyobo/plugins.py' 2023-08-12T12:47:54,896 adding 'pyobo/reader.py' 2023-08-12T12:47:54,898 adding 'pyobo/resource_utils.py' 2023-08-12T12:47:54,899 adding 'pyobo/version.py' 2023-08-12T12:47:54,902 adding 'pyobo/api/__init__.py' 2023-08-12T12:47:54,903 adding 'pyobo/api/alts.py' 2023-08-12T12:47:54,905 adding 'pyobo/api/hierarchy.py' 2023-08-12T12:47:54,907 adding 'pyobo/api/metadata.py' 2023-08-12T12:47:54,909 adding 'pyobo/api/names.py' 2023-08-12T12:47:54,911 adding 'pyobo/api/properties.py' 2023-08-12T12:47:54,913 adding 'pyobo/api/relations.py' 2023-08-12T12:47:54,914 adding 'pyobo/api/species.py' 2023-08-12T12:47:54,916 adding 'pyobo/api/typedefs.py' 2023-08-12T12:47:54,917 adding 'pyobo/api/utils.py' 2023-08-12T12:47:54,919 adding 'pyobo/api/xrefs.py' 2023-08-12T12:47:54,921 adding 'pyobo/apps/__init__.py' 2023-08-12T12:47:54,923 adding 'pyobo/apps/cli.py' 2023-08-12T12:47:54,925 adding 'pyobo/apps/gilda/__init__.py' 2023-08-12T12:47:54,926 adding 'pyobo/apps/gilda/__main__.py' 2023-08-12T12:47:54,928 adding 'pyobo/apps/gilda/app.py' 2023-08-12T12:47:54,929 adding 'pyobo/apps/gilda/cli.py' 2023-08-12T12:47:54,932 adding 'pyobo/apps/gilda/templates/base.html' 2023-08-12T12:47:54,933 adding 'pyobo/apps/gilda/templates/home.html' 2023-08-12T12:47:54,935 adding 'pyobo/apps/gilda/templates/matches.html' 2023-08-12T12:47:54,937 adding 'pyobo/apps/mapper/__init__.py' 2023-08-12T12:47:54,938 adding 'pyobo/apps/mapper/__main__.py' 2023-08-12T12:47:54,940 adding 'pyobo/apps/mapper/cli.py' 2023-08-12T12:47:54,941 adding 'pyobo/apps/mapper/mapper.py' 2023-08-12T12:47:54,944 adding 'pyobo/apps/mapper/templates/base.html' 2023-08-12T12:47:54,945 adding 'pyobo/apps/mapper/templates/mapper_home.html' 2023-08-12T12:47:54,947 adding 'pyobo/cli/__init__.py' 2023-08-12T12:47:54,949 adding 'pyobo/cli/aws.py' 2023-08-12T12:47:54,951 adding 'pyobo/cli/cli.py' 2023-08-12T12:47:54,953 adding 'pyobo/cli/database.py' 2023-08-12T12:47:54,955 adding 'pyobo/cli/lookup.py' 2023-08-12T12:47:54,956 adding 'pyobo/cli/utils.py' 2023-08-12T12:47:54,958 adding 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2023-08-12T12:47:57,741 adding 'pyobo/sources/conso.py' 2023-08-12T12:47:57,743 adding 'pyobo/sources/cpt.py' 2023-08-12T12:47:57,744 adding 'pyobo/sources/cvx.py' 2023-08-12T12:47:57,745 adding 'pyobo/sources/depmap.py' 2023-08-12T12:47:57,747 adding 'pyobo/sources/dictybase_gene.py' 2023-08-12T12:47:57,749 adding 'pyobo/sources/drugbank.py' 2023-08-12T12:47:57,750 adding 'pyobo/sources/drugbank_salt.py' 2023-08-12T12:47:57,751 adding 'pyobo/sources/drugcentral.py' 2023-08-12T12:47:57,753 adding 'pyobo/sources/expasy.py' 2023-08-12T12:47:57,755 adding 'pyobo/sources/famplex.py' 2023-08-12T12:47:57,756 adding 'pyobo/sources/flybase.py' 2023-08-12T12:47:57,758 adding 'pyobo/sources/gmt_utils.py' 2023-08-12T12:47:57,759 adding 'pyobo/sources/go.py' 2023-08-12T12:47:57,761 adding 'pyobo/sources/gwascentral_phenotype.py' 2023-08-12T12:47:57,762 adding 'pyobo/sources/gwascentral_study.py' 2023-08-12T12:47:57,764 adding 'pyobo/sources/hgnc.py' 2023-08-12T12:47:57,766 adding 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adding 'pyobo/sources/pfam_clan.py' 2023-08-12T12:47:57,792 adding 'pyobo/sources/pid.py' 2023-08-12T12:47:57,794 adding 'pyobo/sources/pombase.py' 2023-08-12T12:47:57,795 adding 'pyobo/sources/pubchem.py' 2023-08-12T12:47:57,797 adding 'pyobo/sources/reactome.py' 2023-08-12T12:47:57,798 adding 'pyobo/sources/rgd.py' 2023-08-12T12:47:57,800 adding 'pyobo/sources/rhea.py' 2023-08-12T12:47:57,801 adding 'pyobo/sources/sgd.py' 2023-08-12T12:47:57,803 adding 'pyobo/sources/slm.py' 2023-08-12T12:47:57,804 adding 'pyobo/sources/utils.py' 2023-08-12T12:47:57,805 adding 'pyobo/sources/wikipathways.py' 2023-08-12T12:47:57,807 adding 'pyobo/sources/zfin.py' 2023-08-12T12:47:57,809 adding 'pyobo/sources/kegg/__init__.py' 2023-08-12T12:47:57,810 adding 'pyobo/sources/kegg/api.py' 2023-08-12T12:47:57,812 adding 'pyobo/sources/kegg/genes.py' 2023-08-12T12:47:57,813 adding 'pyobo/sources/kegg/genome.py' 2023-08-12T12:47:57,815 adding 'pyobo/sources/kegg/pathway.py' 2023-08-12T12:47:57,817 adding 'pyobo/sources/selventa/__init__.py' 2023-08-12T12:47:57,818 adding 'pyobo/sources/selventa/schem.py' 2023-08-12T12:47:57,819 adding 'pyobo/sources/selventa/scomp.py' 2023-08-12T12:47:57,821 adding 'pyobo/sources/selventa/sdis.py' 2023-08-12T12:47:57,822 adding 'pyobo/sources/selventa/sfam.py' 2023-08-12T12:47:57,823 adding 'pyobo/sources/umls/__init__.py' 2023-08-12T12:47:57,825 adding 'pyobo/sources/umls/__main__.py' 2023-08-12T12:47:57,826 adding 'pyobo/sources/umls/synonym_types.tsv' 2023-08-12T12:47:57,828 adding 'pyobo/sources/umls/umls.py' 2023-08-12T12:47:57,830 adding 'pyobo/sources/uniprot/__init__.py' 2023-08-12T12:47:57,831 adding 'pyobo/sources/uniprot/uniprot.py' 2023-08-12T12:47:57,833 adding 'pyobo/sources/uniprot/uniprot_ptm.py' 2023-08-12T12:47:57,835 adding 'pyobo/ssg/__init__.py' 2023-08-12T12:47:57,836 adding 'pyobo/ssg/base.html' 2023-08-12T12:47:57,838 adding 'pyobo/ssg/index.html' 2023-08-12T12:47:57,839 adding 'pyobo/ssg/term.html' 2023-08-12T12:47:57,840 adding 'pyobo/ssg/typedef.html' 2023-08-12T12:47:57,842 adding 'pyobo/struct/__init__.py' 2023-08-12T12:47:57,844 adding 'pyobo/struct/reference.py' 2023-08-12T12:47:57,849 adding 'pyobo/struct/struct.py' 2023-08-12T12:47:57,852 adding 'pyobo/struct/typedef.py' 2023-08-12T12:47:57,853 adding 'pyobo/struct/utils.py' 2023-08-12T12:47:57,855 adding 'pyobo/utils/__init__.py' 2023-08-12T12:47:57,856 adding 'pyobo/utils/cache.py' 2023-08-12T12:47:57,857 adding 'pyobo/utils/io.py' 2023-08-12T12:47:57,859 adding 'pyobo/utils/iter.py' 2023-08-12T12:47:57,860 adding 'pyobo/utils/misc.py' 2023-08-12T12:47:57,861 adding 'pyobo/utils/ndex_utils.py' 2023-08-12T12:47:57,863 adding 'pyobo/utils/path.py' 2023-08-12T12:47:57,864 adding 'pyobo/xrefdb/__init__.py' 2023-08-12T12:47:57,866 adding 'pyobo/xrefdb/bengo.py' 2023-08-12T12:47:57,867 adding 'pyobo/xrefdb/canonicalizer.py' 2023-08-12T12:47:57,869 adding 'pyobo/xrefdb/priority.py' 2023-08-12T12:47:57,870 adding 'pyobo/xrefdb/xrefs_pipeline.py' 2023-08-12T12:47:57,872 adding 'pyobo/xrefdb/sources/__init__.py' 2023-08-12T12:47:57,874 adding 'pyobo/xrefdb/sources/biomappings.py' 2023-08-12T12:47:57,875 adding 'pyobo/xrefdb/sources/cbms2019.py' 2023-08-12T12:47:57,876 adding 'pyobo/xrefdb/sources/chembl.py' 2023-08-12T12:47:57,878 adding 'pyobo/xrefdb/sources/compath.py' 2023-08-12T12:47:57,879 adding 'pyobo/xrefdb/sources/famplex.py' 2023-08-12T12:47:57,880 adding 'pyobo/xrefdb/sources/gilda.py' 2023-08-12T12:47:57,882 adding 'pyobo/xrefdb/sources/intact.py' 2023-08-12T12:47:57,883 adding 'pyobo/xrefdb/sources/ncit.py' 2023-08-12T12:47:57,884 adding 'pyobo/xrefdb/sources/pubchem.py' 2023-08-12T12:47:57,886 adding 'pyobo/xrefdb/sources/wikidata.py' 2023-08-12T12:47:57,888 adding 'pyobo-0.10.0.dist-info/LICENSE' 2023-08-12T12:47:57,890 adding 'pyobo-0.10.0.dist-info/METADATA' 2023-08-12T12:47:57,892 adding 'pyobo-0.10.0.dist-info/WHEEL' 2023-08-12T12:47:57,893 adding 'pyobo-0.10.0.dist-info/entry_points.txt' 2023-08-12T12:47:57,893 adding 'pyobo-0.10.0.dist-info/top_level.txt' 2023-08-12T12:47:57,896 adding 'pyobo-0.10.0.dist-info/RECORD' 2023-08-12T12:47:58,139 removing build/bdist.linux-armv7l/wheel 2023-08-12T12:47:58,270 Building wheel for pyobo (pyproject.toml): finished with status 'done' 2023-08-12T12:47:58,754 Created wheel for pyobo: filename=pyobo-0.10.0-py3-none-any.whl size=23092759 sha256=58fa46b63ccf7e84341413842453a62083d1a9c77525b71295866b01333525a6 2023-08-12T12:47:58,755 Stored in directory: /tmp/pip-ephem-wheel-cache-xs660xt7/wheels/f3/33/05/d4291268bf1f710d8a79ebce9afe72e50ee6e72bbe4887a225 2023-08-12T12:47:58,781 Successfully built pyobo 2023-08-12T12:47:59,345 Removed build tracker: '/tmp/pip-build-tracker-egkb7ajc'