2023-08-13T01:09:17,594 Created temporary directory: /tmp/pip-build-tracker-0h2dr03c 2023-08-13T01:09:17,595 Initialized build tracking at /tmp/pip-build-tracker-0h2dr03c 2023-08-13T01:09:17,596 Created build tracker: /tmp/pip-build-tracker-0h2dr03c 2023-08-13T01:09:17,596 Entered build tracker: /tmp/pip-build-tracker-0h2dr03c 2023-08-13T01:09:17,596 Created temporary directory: /tmp/pip-wheel-ntent4us 2023-08-13T01:09:17,600 Created temporary directory: /tmp/pip-ephem-wheel-cache-3a8d4lx5 2023-08-13T01:09:17,626 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-13T01:09:17,629 2 location(s) to search for versions of pybedtools: 2023-08-13T01:09:17,629 * https://pypi.org/simple/pybedtools/ 2023-08-13T01:09:17,629 * https://www.piwheels.org/simple/pybedtools/ 2023-08-13T01:09:17,629 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2023-08-13T01:09:17,630 Getting page https://pypi.org/simple/pybedtools/ 2023-08-13T01:09:17,632 Found index url https://pypi.org/simple/ 2023-08-13T01:09:17,683 Fetched page https://pypi.org/simple/pybedtools/ as application/vnd.pypi.simple.v1+json 2023-08-13T01:09:17,689 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2023-08-13T01:09:17,689 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2023-08-13T01:09:17,689 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2023-08-13T01:09:17,690 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5 2023-08-13T01:09:17,690 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2023-08-13T01:09:17,690 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2023-08-13T01:09:17,690 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6 2023-08-13T01:09:17,691 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2023-08-13T01:09:17,691 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2023-08-13T01:09:17,691 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2023-08-13T01:09:17,691 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2023-08-13T01:09:17,692 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2023-08-13T01:09:17,692 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2023-08-13T01:09:17,692 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2023-08-13T01:09:17,693 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2023-08-13T01:09:17,693 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2023-08-13T01:09:17,693 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2023-08-13T01:09:17,694 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2023-08-13T01:09:17,694 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2023-08-13T01:09:17,694 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2023-08-13T01:09:17,694 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2023-08-13T01:09:17,695 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2023-08-13T01:09:17,695 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2023-08-13T01:09:17,695 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2023-08-13T01:09:17,695 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2023-08-13T01:09:17,696 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2023-08-13T01:09:17,696 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2023-08-13T01:09:17,696 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2023-08-13T01:09:17,696 Found link https://files.pythonhosted.org/packages/58/e2/410bb188b47582e2fd2f7176173b7b7bf46e122bb17fb4422552f4a6c604/pybedtools-0.9.0.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.0 2023-08-13T01:09:17,697 Found link https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz (from https://pypi.org/simple/pybedtools/), version: 0.9.1 2023-08-13T01:09:17,697 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybedtools/ 2023-08-13T01:09:17,697 Getting page https://www.piwheels.org/simple/pybedtools/ 2023-08-13T01:09:17,698 Found index url https://www.piwheels.org/simple/ 2023-08-13T01:09:17,855 Fetched page https://www.piwheels.org/simple/pybedtools/ as text/html 2023-08-13T01:09:17,873 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=c7f6b104f90209f3bba532c14d050fd36cf6dcb6a25866f1c57d2eb933853fd1 (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,873 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=c7f6b104f90209f3bba532c14d050fd36cf6dcb6a25866f1c57d2eb933853fd1 (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,873 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=3c02b8607ef1c00a75a68c36b166b84888b4520947155806b468dee31f6fe065 (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,874 Skipping link: No binaries permitted for pybedtools: 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp35-cp35m-linux_armv6l.whl#sha256=32650659afa40f4f78715fb0c14b3c4d90557472919b58c66c01936bccc3bee3 (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,882 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.7-cp35-cp35m-linux_armv7l.whl#sha256=32650659afa40f4f78715fb0c14b3c4d90557472919b58c66c01936bccc3bee3 (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,882 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=c6fd88b52227c586bc801675c6035ec0cb14b6a7c83270b093f9d15f8374ac59 (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,882 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=c6fd88b52227c586bc801675c6035ec0cb14b6a7c83270b093f9d15f8374ac59 (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,882 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp35-cp35m-linux_armv6l.whl#sha256=255524aca6fa274e0c1586973432ad374dd4b7f648ba77dc3ac86eaf09fb464a (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,882 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.6-cp35-cp35m-linux_armv7l.whl#sha256=255524aca6fa274e0c1586973432ad374dd4b7f648ba77dc3ac86eaf09fb464a (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,883 Skipping link: No binaries permitted for pybedtools: 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.5-cp34-cp34m-linux_armv7l.whl#sha256=f4f69611f6e31072cd229ea44ce4f5a95085886d5ed43a61bc34a7675c11dc86 (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,883 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp35-cp35m-linux_armv7l.whl#sha256=21d579f8dc8be0696fe5705e2d390a6967babfed8601a444a6698e18908a54bf (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,883 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.4-cp35-cp35m-linux_armv6l.whl#sha256=21d579f8dc8be0696fe5705e2d390a6967babfed8601a444a6698e18908a54bf (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,884 Skipping link: No binaries permitted for pybedtools: 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https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp34-cp34m-linux_armv6l.whl#sha256=1101dc6f2f0a800dec0dbddcc707d40429bf6b5dbe42842ff61bb5850a63cc6c (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,885 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp34-cp34m-linux_armv7l.whl#sha256=1101dc6f2f0a800dec0dbddcc707d40429bf6b5dbe42842ff61bb5850a63cc6c (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,885 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv7l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,885 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.7.0-cp35-cp35m-linux_armv6l.whl#sha256=4a8563d567bdbcc4ae26db720acf3980bc4c63af83effdb6ca5e72145e8ddc6f (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,886 Skipping link: No binaries permitted for pybedtools: https://www.piwheels.org/simple/pybedtools/pybedtools-0.2.2.dev0-py3-none-any.whl#sha256=37efef7ea02a872e8d60cd34e5a36bd3e480eaccf7121bd8ac67647dd4550efc (from https://www.piwheels.org/simple/pybedtools/) 2023-08-13T01:09:17,886 Skipping link: not a file: https://www.piwheels.org/simple/pybedtools/ 2023-08-13T01:09:17,886 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2023-08-13T01:09:17,907 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2023-08-13T01:09:17,924 Collecting pybedtools==0.9.1 2023-08-13T01:09:17,926 Created temporary directory: /tmp/pip-unpack-lme4s_77 2023-08-13T01:09:17,975 Downloading pybedtools-0.9.1.tar.gz (12.5 MB) 2023-08-13T01:09:19,574 Added pybedtools==0.9.1 from https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz to build tracker '/tmp/pip-build-tracker-0h2dr03c' 2023-08-13T01:09:19,576 Running setup.py (path:/tmp/pip-wheel-ntent4us/pybedtools_823f638f7d57484b92207a8a5c954d6e/setup.py) egg_info for package pybedtools 2023-08-13T01:09:19,577 Created temporary directory: /tmp/pip-pip-egg-info-tzett71p 2023-08-13T01:09:19,577 Preparing metadata (setup.py): started 2023-08-13T01:09:19,578 Running command python setup.py egg_info 2023-08-13T01:09:20,537 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'language_level' 2023-08-13T01:09:20,537 warnings.warn(msg) 2023-08-13T01:09:20,631 running egg_info 2023-08-13T01:09:20,633 creating /tmp/pip-pip-egg-info-tzett71p/pybedtools.egg-info 2023-08-13T01:09:20,657 writing /tmp/pip-pip-egg-info-tzett71p/pybedtools.egg-info/PKG-INFO 2023-08-13T01:09:20,660 writing dependency_links to /tmp/pip-pip-egg-info-tzett71p/pybedtools.egg-info/dependency_links.txt 2023-08-13T01:09:20,662 writing requirements to /tmp/pip-pip-egg-info-tzett71p/pybedtools.egg-info/requires.txt 2023-08-13T01:09:20,664 writing top-level names to /tmp/pip-pip-egg-info-tzett71p/pybedtools.egg-info/top_level.txt 2023-08-13T01:09:20,665 writing manifest file '/tmp/pip-pip-egg-info-tzett71p/pybedtools.egg-info/SOURCES.txt' 2023-08-13T01:09:20,742 reading manifest file '/tmp/pip-pip-egg-info-tzett71p/pybedtools.egg-info/SOURCES.txt' 2023-08-13T01:09:20,743 adding license file 'LICENSE.txt' 2023-08-13T01:09:20,749 writing manifest file '/tmp/pip-pip-egg-info-tzett71p/pybedtools.egg-info/SOURCES.txt' 2023-08-13T01:09:20,835 Preparing metadata (setup.py): finished with status 'done' 2023-08-13T01:09:20,841 Source in /tmp/pip-wheel-ntent4us/pybedtools_823f638f7d57484b92207a8a5c954d6e has version 0.9.1, which satisfies requirement pybedtools==0.9.1 from https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz 2023-08-13T01:09:20,842 Removed pybedtools==0.9.1 from https://files.pythonhosted.org/packages/38/00/f07c17e25f9cc8e2d22b30aace73733e275b1804196f744f0178012a0d16/pybedtools-0.9.1.tar.gz from build tracker '/tmp/pip-build-tracker-0h2dr03c' 2023-08-13T01:09:20,847 Created temporary directory: /tmp/pip-unpack-14g_s1iq 2023-08-13T01:09:20,847 Building wheels for collected packages: pybedtools 2023-08-13T01:09:20,852 Created temporary directory: /tmp/pip-wheel-cv957smx 2023-08-13T01:09:20,852 Building wheel for pybedtools (setup.py): started 2023-08-13T01:09:20,853 Destination directory: /tmp/pip-wheel-cv957smx 2023-08-13T01:09:20,853 Running command python setup.py bdist_wheel 2023-08-13T01:09:21,763 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'language_level' 2023-08-13T01:09:21,764 warnings.warn(msg) 2023-08-13T01:09:21,895 running bdist_wheel 2023-08-13T01:09:21,919 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2023-08-13T01:09:21,944 running build 2023-08-13T01:09:21,945 running build_py 2023-08-13T01:09:21,972 creating build 2023-08-13T01:09:21,973 creating build/lib.linux-armv7l-cpython-39 2023-08-13T01:09:21,974 creating build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,975 copying pybedtools/helpers.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,977 copying pybedtools/logger.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,979 copying pybedtools/parallel.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,981 copying pybedtools/settings.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,983 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,988 copying pybedtools/stats.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,989 copying pybedtools/version.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,991 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,996 copying pybedtools/paths.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,997 copying pybedtools/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:21,999 copying pybedtools/filenames.py -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:22,002 creating build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,003 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,005 copying pybedtools/test/test_1.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,008 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,010 copying pybedtools/test/test_pathlib.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,012 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,014 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,016 copying pybedtools/test/genomepy_integration.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,017 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,019 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,021 copying pybedtools/test/test_issues.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,023 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,026 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,027 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test 2023-08-13T01:09:22,030 creating build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2023-08-13T01:09:22,031 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2023-08-13T01:09:22,033 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2023-08-13T01:09:22,035 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2023-08-13T01:09:22,038 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2023-08-13T01:09:22,040 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2023-08-13T01:09:22,041 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2023-08-13T01:09:22,043 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-cpython-39/pybedtools/contrib 2023-08-13T01:09:22,046 creating build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,047 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,049 running egg_info 2023-08-13T01:09:22,082 creating pybedtools.egg-info 2023-08-13T01:09:22,107 writing pybedtools.egg-info/PKG-INFO 2023-08-13T01:09:22,110 writing dependency_links to pybedtools.egg-info/dependency_links.txt 2023-08-13T01:09:22,112 writing requirements to pybedtools.egg-info/requires.txt 2023-08-13T01:09:22,113 writing top-level names to pybedtools.egg-info/top_level.txt 2023-08-13T01:09:22,114 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-08-13T01:09:22,157 reading manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-08-13T01:09:22,159 adding license file 'LICENSE.txt' 2023-08-13T01:09:22,165 writing manifest file 'pybedtools.egg-info/SOURCES.txt' 2023-08-13T01:09:22,168 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pybedtools.include' is absent from the `packages` configuration. 2023-08-13T01:09:22,168 !! 2023-08-13T01:09:22,168 ******************************************************************************** 2023-08-13T01:09:22,169 ############################ 2023-08-13T01:09:22,169 # Package would be ignored # 2023-08-13T01:09:22,169 ############################ 2023-08-13T01:09:22,169 Python recognizes 'pybedtools.include' as an importable package[^1], 2023-08-13T01:09:22,169 but it is absent from setuptools' `packages` configuration. 2023-08-13T01:09:22,169 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-13T01:09:22,170 package, please make sure that 'pybedtools.include' is explicitly added 2023-08-13T01:09:22,170 to the `packages` configuration field. 2023-08-13T01:09:22,170 Alternatively, you can also rely on setuptools' discovery methods 2023-08-13T01:09:22,170 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-13T01:09:22,170 instead of `find_packages(...)`/`find:`). 2023-08-13T01:09:22,171 You can read more about "package discovery" on setuptools documentation page: 2023-08-13T01:09:22,171 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-13T01:09:22,171 If you don't want 'pybedtools.include' to be distributed and are 2023-08-13T01:09:22,171 already explicitly excluding 'pybedtools.include' via 2023-08-13T01:09:22,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-13T01:09:22,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-13T01:09:22,172 combination with a more fine grained `package-data` configuration. 2023-08-13T01:09:22,172 You can read more about "package data files" on setuptools documentation page: 2023-08-13T01:09:22,172 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-13T01:09:22,173 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-13T01:09:22,173 even if it does not contain any `.py` files. 2023-08-13T01:09:22,173 On the other hand, currently there is no concept of package data 2023-08-13T01:09:22,173 directory, all directories are treated like packages. 2023-08-13T01:09:22,174 ******************************************************************************** 2023-08-13T01:09:22,174 !! 2023-08-13T01:09:22,174 check.warn(importable) 2023-08-13T01:09:22,185 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:22,187 copying pybedtools/cbedtools.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:22,211 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:22,213 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:22,216 copying pybedtools/featurefuncs.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:22,229 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:22,232 creating build/lib.linux-armv7l-cpython-39/pybedtools/include 2023-08-13T01:09:22,233 copying pybedtools/include/bedFile.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2023-08-13T01:09:22,236 copying pybedtools/include/fileType.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2023-08-13T01:09:22,238 copying pybedtools/include/gzstream.cpp -> build/lib.linux-armv7l-cpython-39/pybedtools/include 2023-08-13T01:09:22,241 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,243 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,245 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,252 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,255 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,265 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,267 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,269 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,271 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,273 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,275 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,277 copying pybedtools/test/data/a.bed.gz.tbi -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,280 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,282 copying pybedtools/test/data/1000genomes-example.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,283 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,285 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,287 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,289 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,305 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,306 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,309 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,310 copying pybedtools/test/data/issue319.out.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,321 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,323 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,325 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,330 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,332 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,334 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,336 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,338 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,340 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,342 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,346 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,348 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,350 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,352 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,354 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,356 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,358 copying pybedtools/test/data/genome.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,360 copying pybedtools/test/data/issue319.vcf.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,363 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,365 copying pybedtools/test/data/a.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,368 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,370 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,374 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,376 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,381 copying pybedtools/test/data/example.narrowPeak -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,383 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,385 copying pybedtools/test/data/gdc.cram -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,387 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,391 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,393 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,396 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,398 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,400 copying pybedtools/test/data/gdc.othersort.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,402 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,412 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,414 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,418 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,421 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,423 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,470 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,472 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,477 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,514 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,516 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,518 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,520 copying pybedtools/test/data/issue319.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,522 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,526 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,641 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-cpython-39/pybedtools/test/data 2023-08-13T01:09:22,672 running build_ext 2023-08-13T01:09:22,678 building 'pybedtools.cbedtools' extension 2023-08-13T01:09:22,679 creating build/temp.linux-armv7l-cpython-39 2023-08-13T01:09:22,680 creating build/temp.linux-armv7l-cpython-39/pybedtools 2023-08-13T01:09:22,681 creating build/temp.linux-armv7l-cpython-39/pybedtools/include 2023-08-13T01:09:22,682 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/cbedtools.o 2023-08-13T01:09:46,629 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o 2023-08-13T01:09:54,302 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o 2023-08-13T01:09:55,564 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o 2023-08-13T01:09:56,911 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pybedtools/cbedtools.o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o -L/usr/lib -lstdc++ -lz -o build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so 2023-08-13T01:09:57,326 building 'pybedtools.featurefuncs' extension 2023-08-13T01:09:57,327 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/featurefuncs.o 2023-08-13T01:10:07,655 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o 2023-08-13T01:10:15,346 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o 2023-08-13T01:10:16,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o 2023-08-13T01:10:17,943 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/pybedtools/featurefuncs.o build/temp.linux-armv7l-cpython-39/pybedtools/include/bedFile.o build/temp.linux-armv7l-cpython-39/pybedtools/include/fileType.o build/temp.linux-armv7l-cpython-39/pybedtools/include/gzstream.o -L/usr/lib -lstdc++ -lz -o build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so 2023-08-13T01:10:18,318 /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-08-13T01:10:18,318 !! 2023-08-13T01:10:18,318 ******************************************************************************** 2023-08-13T01:10:18,319 Please avoid running ``setup.py`` directly. 2023-08-13T01:10:18,319 Instead, use pypa/build, pypa/installer, pypa/build or 2023-08-13T01:10:18,319 other standards-based tools. 2023-08-13T01:10:18,319 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-08-13T01:10:18,319 ******************************************************************************** 2023-08-13T01:10:18,320 !! 2023-08-13T01:10:18,320 self.initialize_options() 2023-08-13T01:10:18,344 installing to build/bdist.linux-armv7l/wheel 2023-08-13T01:10:18,345 running install 2023-08-13T01:10:18,371 running install_lib 2023-08-13T01:10:18,398 creating build/bdist.linux-armv7l 2023-08-13T01:10:18,398 creating build/bdist.linux-armv7l/wheel 2023-08-13T01:10:18,400 creating build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,401 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpp -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,411 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,464 copying build/lib.linux-armv7l-cpython-39/pybedtools/helpers.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,467 copying build/lib.linux-armv7l-cpython-39/pybedtools/featurefuncs.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,469 copying build/lib.linux-armv7l-cpython-39/pybedtools/logger.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,471 copying build/lib.linux-armv7l-cpython-39/pybedtools/parallel.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,473 copying build/lib.linux-armv7l-cpython-39/pybedtools/settings.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,475 copying build/lib.linux-armv7l-cpython-39/pybedtools/genome_registry.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,480 creating build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-08-13T01:10:18,481 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/intersection_matrix.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-08-13T01:10:18,483 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/venn_maker.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-08-13T01:10:18,485 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/long_range_interaction.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-08-13T01:10:18,487 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/bigbed.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-08-13T01:10:18,489 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-08-13T01:10:18,491 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/bigwig.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-08-13T01:10:18,493 copying build/lib.linux-armv7l-cpython-39/pybedtools/contrib/plotting.py -> build/bdist.linux-armv7l/wheel/pybedtools/contrib 2023-08-13T01:10:18,496 copying build/lib.linux-armv7l-cpython-39/pybedtools/stats.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,497 copying build/lib.linux-armv7l-cpython-39/pybedtools/version.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,499 copying build/lib.linux-armv7l-cpython-39/pybedtools/bedtool.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,504 copying build/lib.linux-armv7l-cpython-39/pybedtools/paths.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,505 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpp -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,529 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.pxd -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,531 copying build/lib.linux-armv7l-cpython-39/pybedtools/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,533 copying build/lib.linux-armv7l-cpython-39/pybedtools/filenames.py -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,534 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,539 creating build/bdist.linux-armv7l/wheel/pybedtools/include 2023-08-13T01:10:18,540 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/fileType.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2023-08-13T01:10:18,542 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/bedFile.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2023-08-13T01:10:18,544 copying build/lib.linux-armv7l-cpython-39/pybedtools/include/gzstream.cpp -> build/bdist.linux-armv7l/wheel/pybedtools/include 2023-08-13T01:10:18,546 copying build/lib.linux-armv7l-cpython-39/pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,593 copying build/lib.linux-armv7l-cpython-39/pybedtools/_Window.pyx -> build/bdist.linux-armv7l/wheel/pybedtools 2023-08-13T01:10:18,596 creating build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,597 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_iter.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,599 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_1.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,604 creating build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,605 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/venn.b.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,607 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/reads.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,609 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,613 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.igv_script -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,615 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg19.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,621 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/164.gtf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,623 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,625 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,627 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue_121.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,629 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/small.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,630 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/d.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,632 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,634 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/c.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,635 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/1000genomes-example.vcf.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,637 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,639 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,640 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,642 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,651 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,653 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,655 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,657 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,663 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/m1.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,665 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/b.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,667 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,670 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,672 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,674 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,676 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/bedpe.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,678 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/small.fastq -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,680 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,682 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,684 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,686 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,688 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,690 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,692 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,694 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.links.html -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,696 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/genome.fa -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,698 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,701 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,703 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,705 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,707 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,711 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,713 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,717 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,719 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,721 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/y.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,723 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.cram -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,725 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,728 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/a.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,730 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,733 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/expand_test.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,735 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,737 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,739 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,750 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/exons.gff -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,752 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,756 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/venn.c.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,759 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test.fa.fai -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,761 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/x.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,799 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/v.vcf -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,801 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,805 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/x.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,849 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,851 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/test.fa -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,853 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,854 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/issue319.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,856 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,859 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,980 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-armv7l/wheel/pybedtools/test/data 2023-08-13T01:10:18,982 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_helpers.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,985 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_pathlib.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,987 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_contrib.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,989 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/tfuncs.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,991 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/genomepy_integration.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,993 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/__init__.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,995 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_gzip_support.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:18,997 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_issues.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:19,000 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_cbedtools.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:19,002 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/test_len_leak.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:19,004 copying build/lib.linux-armv7l-cpython-39/pybedtools/test/regression_tests.py -> build/bdist.linux-armv7l/wheel/pybedtools/test 2023-08-13T01:10:19,006 running install_egg_info 2023-08-13T01:10:19,037 Copying pybedtools.egg-info to build/bdist.linux-armv7l/wheel/pybedtools-0.9.1-py3.9.egg-info 2023-08-13T01:10:19,049 running install_scripts 2023-08-13T01:10:19,097 creating build/bdist.linux-armv7l/wheel/pybedtools-0.9.1.dist-info/WHEEL 2023-08-13T01:10:19,101 creating '/tmp/pip-wheel-cv957smx/pybedtools-0.9.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-13T01:10:19,104 adding 'pybedtools/_Window.pyx' 2023-08-13T01:10:19,106 adding 'pybedtools/__init__.py' 2023-08-13T01:10:19,123 adding 'pybedtools/bedtool.py' 2023-08-13T01:10:19,195 adding 'pybedtools/cbedtools.cpp' 2023-08-13T01:10:19,701 adding 'pybedtools/cbedtools.cpython-39-arm-linux-gnueabihf.so' 2023-08-13T01:10:19,721 adding 'pybedtools/cbedtools.pxd' 2023-08-13T01:10:19,725 adding 'pybedtools/cbedtools.pyx' 2023-08-13T01:10:19,761 adding 'pybedtools/featurefuncs.cpp' 2023-08-13T01:10:20,052 adding 'pybedtools/featurefuncs.cpython-39-arm-linux-gnueabihf.so' 2023-08-13T01:10:20,064 adding 'pybedtools/featurefuncs.pyx' 2023-08-13T01:10:20,065 adding 'pybedtools/filenames.py' 2023-08-13T01:10:20,074 adding 'pybedtools/genome_registry.py' 2023-08-13T01:10:20,079 adding 'pybedtools/helpers.py' 2023-08-13T01:10:20,081 adding 'pybedtools/logger.py' 2023-08-13T01:10:20,083 adding 'pybedtools/parallel.py' 2023-08-13T01:10:20,084 adding 'pybedtools/paths.py' 2023-08-13T01:10:20,086 adding 'pybedtools/settings.py' 2023-08-13T01:10:20,087 adding 'pybedtools/stats.py' 2023-08-13T01:10:20,089 adding 'pybedtools/version.py' 2023-08-13T01:10:20,091 adding 'pybedtools/contrib/__init__.py' 2023-08-13T01:10:20,092 adding 'pybedtools/contrib/bigbed.py' 2023-08-13T01:10:20,094 adding 'pybedtools/contrib/bigwig.py' 2023-08-13T01:10:20,096 adding 'pybedtools/contrib/intersection_matrix.py' 2023-08-13T01:10:20,099 adding 'pybedtools/contrib/long_range_interaction.py' 2023-08-13T01:10:20,102 adding 'pybedtools/contrib/plotting.py' 2023-08-13T01:10:20,104 adding 'pybedtools/contrib/venn_maker.py' 2023-08-13T01:10:20,107 adding 'pybedtools/include/bedFile.cpp' 2023-08-13T01:10:20,109 adding 'pybedtools/include/fileType.cpp' 2023-08-13T01:10:20,111 adding 'pybedtools/include/gzstream.cpp' 2023-08-13T01:10:20,113 adding 'pybedtools/test/__init__.py' 2023-08-13T01:10:20,115 adding 'pybedtools/test/genomepy_integration.py' 2023-08-13T01:10:20,116 adding 'pybedtools/test/regression_tests.py' 2023-08-13T01:10:20,122 adding 'pybedtools/test/test_1.py' 2023-08-13T01:10:20,125 adding 'pybedtools/test/test_cbedtools.py' 2023-08-13T01:10:20,127 adding 'pybedtools/test/test_contrib.py' 2023-08-13T01:10:20,129 adding 'pybedtools/test/test_gzip_support.py' 2023-08-13T01:10:20,131 adding 'pybedtools/test/test_helpers.py' 2023-08-13T01:10:20,134 adding 'pybedtools/test/test_issues.py' 2023-08-13T01:10:20,136 adding 'pybedtools/test/test_iter.py' 2023-08-13T01:10:20,138 adding 'pybedtools/test/test_len_leak.py' 2023-08-13T01:10:20,140 adding 'pybedtools/test/test_pathlib.py' 2023-08-13T01:10:20,141 adding 'pybedtools/test/tfuncs.py' 2023-08-13T01:10:20,144 adding 'pybedtools/test/data/1000genomes-example.vcf' 2023-08-13T01:10:20,146 adding 'pybedtools/test/data/1000genomes-example.vcf.gz' 2023-08-13T01:10:20,147 adding 'pybedtools/test/data/164.gtf' 2023-08-13T01:10:20,161 adding 'pybedtools/test/data/BEAF_Kc_Bushey_2009.bed' 2023-08-13T01:10:20,175 adding 'pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed' 2023-08-13T01:10:20,185 adding 'pybedtools/test/data/CTCF_Kc_Bushey_2009.bed' 2023-08-13T01:10:20,198 adding 'pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed' 2023-08-13T01:10:20,221 adding 'pybedtools/test/data/Cp190_Kc_Bushey_2009.bed' 2023-08-13T01:10:20,245 adding 'pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed' 2023-08-13T01:10:20,262 adding 'pybedtools/test/data/SuHw_Kc_Bushey_2009.bed' 2023-08-13T01:10:20,277 adding 'pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed' 2023-08-13T01:10:20,279 adding 'pybedtools/test/data/__init__.py' 2023-08-13T01:10:20,281 adding 'pybedtools/test/data/a.bed' 2023-08-13T01:10:20,282 adding 'pybedtools/test/data/a.bed.gz' 2023-08-13T01:10:20,284 adding 'pybedtools/test/data/a.bed.gz.tbi' 2023-08-13T01:10:20,285 adding 'pybedtools/test/data/a.igv_script' 2023-08-13T01:10:20,287 adding 'pybedtools/test/data/a.links.html' 2023-08-13T01:10:20,288 adding 'pybedtools/test/data/b.bed' 2023-08-13T01:10:20,289 adding 'pybedtools/test/data/bedpe.bed' 2023-08-13T01:10:20,290 adding 'pybedtools/test/data/bedpe2.bed' 2023-08-13T01:10:20,292 adding 'pybedtools/test/data/c.gff' 2023-08-13T01:10:20,293 adding 'pybedtools/test/data/d.gff' 2023-08-13T01:10:20,294 adding 'pybedtools/test/data/democonfig.yaml' 2023-08-13T01:10:20,342 adding 'pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz' 2023-08-13T01:10:20,391 adding 'pybedtools/test/data/dm3-chr2L-5M.gff.gz' 2023-08-13T01:10:20,395 adding 'pybedtools/test/data/example.narrowPeak' 2023-08-13T01:10:20,396 adding 'pybedtools/test/data/exons.gff' 2023-08-13T01:10:20,397 adding 'pybedtools/test/data/expand_test.bed' 2023-08-13T01:10:20,398 adding 'pybedtools/test/data/gdc.1.100.bam' 2023-08-13T01:10:20,399 adding 'pybedtools/test/data/gdc.1.100.bam.bai' 2023-08-13T01:10:20,400 adding 'pybedtools/test/data/gdc.50.200.bam' 2023-08-13T01:10:20,401 adding 'pybedtools/test/data/gdc.50.200.bam.bai' 2023-08-13T01:10:20,403 adding 'pybedtools/test/data/gdc.bam' 2023-08-13T01:10:20,404 adding 'pybedtools/test/data/gdc.bed' 2023-08-13T01:10:20,405 adding 'pybedtools/test/data/gdc.cram' 2023-08-13T01:10:20,406 adding 'pybedtools/test/data/gdc.gff' 2023-08-13T01:10:20,407 adding 'pybedtools/test/data/gdc.gff.gz' 2023-08-13T01:10:20,409 adding 'pybedtools/test/data/gdc.othersort.bam' 2023-08-13T01:10:20,410 adding 'pybedtools/test/data/gdc.sorted.bam' 2023-08-13T01:10:20,411 adding 'pybedtools/test/data/gdc.sorted.bam.bai' 2023-08-13T01:10:20,412 adding 'pybedtools/test/data/genome.fa' 2023-08-13T01:10:20,436 adding 'pybedtools/test/data/hg19.gff' 2023-08-13T01:10:20,438 adding 'pybedtools/test/data/hg38-base.bed' 2023-08-13T01:10:20,439 adding 'pybedtools/test/data/hg38-problem.bed' 2023-08-13T01:10:20,441 adding 'pybedtools/test/data/issue319.bed' 2023-08-13T01:10:20,451 adding 'pybedtools/test/data/issue319.out.bed' 2023-08-13T01:10:20,455 adding 'pybedtools/test/data/issue319.vcf.gz' 2023-08-13T01:10:20,457 adding 'pybedtools/test/data/issue_121.bam' 2023-08-13T01:10:20,458 adding 'pybedtools/test/data/m1.bed' 2023-08-13T01:10:20,459 adding 'pybedtools/test/data/mm9.bed12' 2023-08-13T01:10:20,460 adding 'pybedtools/test/data/multibamcov_test.bed' 2023-08-13T01:10:20,462 adding 'pybedtools/test/data/reads.bam' 2023-08-13T01:10:20,467 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed' 2023-08-13T01:10:20,470 adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz' 2023-08-13T01:10:20,471 adding 'pybedtools/test/data/small.bam' 2023-08-13T01:10:20,472 adding 'pybedtools/test/data/small.fastq' 2023-08-13T01:10:21,433 adding 'pybedtools/test/data/snps.bed.gz' 2023-08-13T01:10:21,486 adding 'pybedtools/test/data/tag_test1.bed' 2023-08-13T01:10:21,487 adding 'pybedtools/test/data/tag_test2.bed' 2023-08-13T01:10:21,489 adding 'pybedtools/test/data/test.fa' 2023-08-13T01:10:21,490 adding 'pybedtools/test/data/test.fa.fai' 2023-08-13T01:10:21,491 adding 'pybedtools/test/data/test_bedpe.bed' 2023-08-13T01:10:21,492 adding 'pybedtools/test/data/test_peaks.bed' 2023-08-13T01:10:21,493 adding 'pybedtools/test/data/test_tsses.bed' 2023-08-13T01:10:21,494 adding 'pybedtools/test/data/v.vcf' 2023-08-13T01:10:21,495 adding 'pybedtools/test/data/vcf-stderr-test.bed' 2023-08-13T01:10:21,497 adding 'pybedtools/test/data/vcf-stderr-test.vcf' 2023-08-13T01:10:21,499 adding 'pybedtools/test/data/venn.b.bed' 2023-08-13T01:10:21,500 adding 'pybedtools/test/data/venn.c.bed' 2023-08-13T01:10:21,712 adding 'pybedtools/test/data/x.bam' 2023-08-13T01:10:22,063 adding 'pybedtools/test/data/x.bed' 2023-08-13T01:10:22,080 adding 'pybedtools/test/data/y.bam' 2023-08-13T01:10:22,082 adding 'pybedtools-0.9.1.dist-info/LICENSE.txt' 2023-08-13T01:10:22,084 adding 'pybedtools-0.9.1.dist-info/METADATA' 2023-08-13T01:10:22,085 adding 'pybedtools-0.9.1.dist-info/WHEEL' 2023-08-13T01:10:22,086 adding 'pybedtools-0.9.1.dist-info/top_level.txt' 2023-08-13T01:10:22,088 adding 'pybedtools-0.9.1.dist-info/RECORD' 2023-08-13T01:10:22,242 removing build/bdist.linux-armv7l/wheel 2023-08-13T01:10:22,381 Building wheel for pybedtools (setup.py): finished with status 'done' 2023-08-13T01:10:22,524 Created wheel for pybedtools: filename=pybedtools-0.9.1-cp39-cp39-linux_armv7l.whl size=13999595 sha256=aac4ce2ebe92db07c21f083906878a68f16480f350569fd0e6765abad7cc0212 2023-08-13T01:10:22,525 Stored in directory: /tmp/pip-ephem-wheel-cache-3a8d4lx5/wheels/f0/1f/e2/aeefa696f5c881fc15a2abc773c5031e637a592fb1a90ddba2 2023-08-13T01:10:22,544 Successfully built pybedtools 2023-08-13T01:10:22,867 Removed build tracker: '/tmp/pip-build-tracker-0h2dr03c'