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https://files.pythonhosted.org/packages/f2/8b/c6f3db1e022b3716322528bcfdf3e806c56cdcf7713e9db70b75343db384/MDAnalysis-2.5.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,091 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/bc/ec355c860ef217518041358c33cf8d2905d0580daaa2946405deec5ea7f4/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,092 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5c/e6/0a150fec191ba3d421ae2ac183fc51bfddb0031fc4190e1832605158a845/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,092 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/28/c26a404ee253d0839b6ea21053b79e5662883b92b1672ff0e1678b679f44/MDAnalysis-2.5.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,092 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/36/c4/6d7e584d3dbccc8f197ed6acc47ec8c72dc4a11b101192c91d122079ec17/MDAnalysis-2.5.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,092 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5e/35/c174ccad552dd6ddbcd907b3ed000344e4ea4da82cd960d0e20a7c221c25/MDAnalysis-2.5.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,092 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/85/03/7ae1477a01aa3b3b38cf87988316846fd65ba3a6572d00dfe83ea0d8f27f/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,093 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/80/72619db87e3b6997b84a817605439aa2c37b0e083aada34e4d3a312f4ea5/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,093 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b1/b5/fb8748f0b076b2d01df6f6d80bfcd6a94e07f1a9d35c636e085b511ca12d/MDAnalysis-2.5.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,093 Found link 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https://files.pythonhosted.org/packages/8f/0b/a941f3e533117111e546b611aa234b6cf208dd209a0f58115b0861cd44af/MDAnalysis-2.6.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,094 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a4/91/f997fe2ee6f6eda73cdbc97c3dc266ab8ea661bae1136e784e01ec2187e7/MDAnalysis-2.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,094 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3f/51/7c5790085f4d61211b38872cce7217bdfb46fa28f7247d7e565f67521645/MDAnalysis-2.6.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,095 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ea/0f/6dc7ec68db8c42b0703fb7bb15885ac607e1f0f09f5a9c134035353629fe/MDAnalysis-2.6.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,095 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e3/58/d738cb229e6e908f37bd5b2d2cd9e947dff78b18178f971a9803c367b140/MDAnalysis-2.6.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,095 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/56/07/c51e53ba655c3996993ed048b27b2ad472098ff111e140beddfa0f87a664/MDAnalysis-2.6.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,095 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1f/662db1dc5887f1c7c0ed9022bb22c3dff8106efd74c7a589597260da3dcd/MDAnalysis-2.6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,095 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/05/65e89dac4c27984d8c2b555e104aed258db02f8141ecea64422771c63a75/MDAnalysis-2.6.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,095 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/1f/19/fe06d9d3a491eec7615d1a6b9804fd2b2f4f262a22cd1229eced619deb72/MDAnalysis-2.6.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,096 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ad/22/7fbf313b9bcb3fe390da1eaaeecb542f52a8abdd09dc94c106a8a30ac505/MDAnalysis-2.6.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,096 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4b/0e/8064c23b5cfab15a07c5669d72fb94bcf73b69ac36018073b9521760e21c/MDAnalysis-2.6.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,096 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/91/40/c86f37f0bc281f1002e7f800acd1747c50b1b0cfe25beaba543e3a9f0104/MDAnalysis-2.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,096 Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a6/35/cf1c6a669eabb4e6b9c66e5f60214eef0d111c82dca16c265afd9a1f61e5/MDAnalysis-2.6.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9) 2023-08-16T00:00:24,097 Found link https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.6.0 2023-08-16T00:00:24,097 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdanalysis/ 2023-08-16T00:00:24,097 Getting page https://www.piwheels.org/simple/mdanalysis/ 2023-08-16T00:00:24,099 Found index url https://www.piwheels.org/simple/ 2023-08-16T00:00:26,507 Fetched page https://www.piwheels.org/simple/mdanalysis/ as text/html 2023-08-16T00:00:26,581 Skipping link: No binaries permitted for mdanalysis: 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https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv7l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,586 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv6l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,586 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9) 2023-08-16T00:00:26,586 Skipping link: No binaries permitted for mdanalysis: 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2023-08-16T00:00:26,587 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9) 2023-08-16T00:00:26,587 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9) 2023-08-16T00:00:26,587 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/) 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https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,596 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv6l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,596 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv7l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,596 Skipping link: No binaries permitted for mdanalysis: 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https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv7l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,597 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv6l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,597 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv7l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv6l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv7l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv7l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv6l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,598 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,599 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv6l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv7l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv6l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv7l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv6l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,600 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv7l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv7l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv6l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv7l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv6l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,601 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv6l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv7l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv7l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv6l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv7l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,602 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv6l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv6l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv7l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv6l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv7l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv6l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,603 Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv7l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/) 2023-08-16T00:00:26,604 Skipping link: not a file: https://www.piwheels.org/simple/mdanalysis/ 2023-08-16T00:00:26,604 Skipping link: not a file: https://pypi.org/simple/mdanalysis/ 2023-08-16T00:00:26,627 Given no hashes to check 1 links for project 'mdanalysis': discarding no candidates 2023-08-16T00:00:26,645 Collecting mdanalysis==2.6.0 2023-08-16T00:00:26,647 Created temporary directory: /tmp/pip-unpack-bj6e1ilt 2023-08-16T00:00:26,770 Downloading MDAnalysis-2.6.0.tar.gz (4.1 MB) 2023-08-16T00:00:32,758 Added mdanalysis==2.6.0 from https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-b9zzpblj' 2023-08-16T00:00:32,768 Created temporary directory: /tmp/pip-build-env-4ni8pc0m 2023-08-16T00:00:32,783 Installing build dependencies: started 2023-08-16T00:00:32,784 Running command pip subprocess to install build dependencies 2023-08-16T00:00:35,051 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-08-16T00:00:36,053 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-16T00:00:44,557 Collecting Cython>=0.28 2023-08-16T00:00:49,576 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.0-cp39-cp39-linux_armv7l.whl (10.6 MB) 2023-08-16T00:00:50,313 Collecting packaging 2023-08-16T00:00:50,560 Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB) 2023-08-16T00:00:51,891 Collecting numpy<2.0,>=1.25 2023-08-16T00:00:53,308 Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp39-cp39-linux_armv7l.whl (12.5 MB) 2023-08-16T00:00:55,309 Collecting setuptools 2023-08-16T00:00:55,403 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.1.0-py3-none-any.whl (805 kB) 2023-08-16T00:00:55,711 Collecting wheel 2023-08-16T00:00:55,733 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.1-py3-none-any.whl (64 kB) 2023-08-16T00:00:57,758 Installing collected packages: wheel, setuptools, packaging, numpy, Cython 2023-08-16T00:00:58,019 Creating /tmp/pip-build-env-4ni8pc0m/overlay/bin 2023-08-16T00:00:58,022 changing mode of /tmp/pip-build-env-4ni8pc0m/overlay/bin/wheel to 755 2023-08-16T00:01:25,817 changing mode of /tmp/pip-build-env-4ni8pc0m/overlay/bin/f2py to 755 2023-08-16T00:01:25,819 changing mode of /tmp/pip-build-env-4ni8pc0m/overlay/bin/f2py3 to 755 2023-08-16T00:01:25,822 changing mode of /tmp/pip-build-env-4ni8pc0m/overlay/bin/f2py3.9 to 755 2023-08-16T00:01:32,144 changing mode of /tmp/pip-build-env-4ni8pc0m/overlay/bin/cygdb to 755 2023-08-16T00:01:32,146 changing mode of /tmp/pip-build-env-4ni8pc0m/overlay/bin/cython to 755 2023-08-16T00:01:32,148 changing mode of /tmp/pip-build-env-4ni8pc0m/overlay/bin/cythonize to 755 2023-08-16T00:01:32,178 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2023-08-16T00:01:32,178 scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.25.2 which is incompatible. 2023-08-16T00:01:32,179 Successfully installed Cython-3.0.0 numpy-1.25.2 packaging-23.1 setuptools-68.1.0 wheel-0.41.1 2023-08-16T00:01:32,196 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-16T00:01:32,196 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-16T00:01:32,569 Installing build dependencies: finished with status 'done' 2023-08-16T00:01:32,582 Getting requirements to build wheel: started 2023-08-16T00:01:32,583 Running command Getting requirements to build wheel 2023-08-16T00:01:49,707 warning: MDAnalysis/lib/nsgrid.pyx:86:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-16T00:01:49,708 warning: MDAnalysis/lib/nsgrid.pyx:88:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-16T00:01:49,708 warning: MDAnalysis/lib/nsgrid.pyx:89:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-16T00:01:49,708 warning: MDAnalysis/lib/nsgrid.pyx:90:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-16T00:01:49,709 warning: MDAnalysis/lib/nsgrid.pyx:91:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-16T00:01:49,709 warning: MDAnalysis/lib/nsgrid.pyx:92:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-16T00:01:49,709 warning: MDAnalysis/lib/nsgrid.pyx:93:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-16T00:01:49,709 warning: MDAnalysis/lib/nsgrid.pyx:97:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-16T00:02:13,509 Attempting to autodetect OpenMP support... Compiler supports OpenMP 2023-08-16T00:02:13,509 Will attempt to use Cython. 2023-08-16T00:02:13,509 Compiling MDAnalysis/lib/formats/libdcd.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/lib/c_distances.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/lib/c_distances_openmp.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/lib/qcprot.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/lib/formats/libmdaxdr.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/lib/formats/cython_util.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/analysis/encore/cutils.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/analysis/encore/clustering/affinityprop.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-08-16T00:02:13,510 Compiling MDAnalysis/lib/_cutil.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-08-16T00:02:13,511 Compiling MDAnalysis/lib/_augment.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-08-16T00:02:13,511 Compiling MDAnalysis/lib/nsgrid.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd. 2023-08-16T00:02:13,511 Compiling MDAnalysis/coordinates/timestep.pyx because it depends on /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/__init__.pxd. 2023-08-16T00:02:13,511 [ 1/13] Cythonizing MDAnalysis/lib/_augment.pyx 2023-08-16T00:02:13,511 [ 2/13] Cythonizing MDAnalysis/lib/_cutil.pyx 2023-08-16T00:02:13,511 [ 3/13] Cythonizing MDAnalysis/lib/nsgrid.pyx 2023-08-16T00:02:13,511 [ 4/13] Cythonizing MDAnalysis/analysis/encore/clustering/affinityprop.pyx 2023-08-16T00:02:13,511 [ 5/13] Cythonizing MDAnalysis/analysis/encore/cutils.pyx 2023-08-16T00:02:13,512 [ 6/13] Cythonizing MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx 2023-08-16T00:02:13,512 [ 7/13] Cythonizing MDAnalysis/coordinates/timestep.pyx 2023-08-16T00:02:13,512 [ 8/13] Cythonizing MDAnalysis/lib/c_distances.pyx 2023-08-16T00:02:13,512 [ 9/13] Cythonizing MDAnalysis/lib/c_distances_openmp.pyx 2023-08-16T00:02:13,512 [10/13] Cythonizing MDAnalysis/lib/formats/cython_util.pyx 2023-08-16T00:02:13,512 [11/13] Cythonizing MDAnalysis/lib/formats/libdcd.pyx 2023-08-16T00:02:13,513 [12/13] Cythonizing MDAnalysis/lib/formats/libmdaxdr.pyx 2023-08-16T00:02:13,513 [13/13] Cythonizing MDAnalysis/lib/qcprot.pyx 2023-08-16T00:02:14,356 Getting requirements to build wheel: finished with status 'done' 2023-08-16T00:02:14,368 Created temporary directory: /tmp/pip-modern-metadata-ar55mgad 2023-08-16T00:02:14,372 Preparing metadata (pyproject.toml): started 2023-08-16T00:02:14,373 Running command Preparing metadata (pyproject.toml) 2023-08-16T00:02:16,814 Attempting to autodetect OpenMP support... Compiler supports OpenMP 2023-08-16T00:02:16,814 Will attempt to use Cython. 2023-08-16T00:02:16,939 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-08-16T00:02:16,940 corresp(dist, value, root_dir) 2023-08-16T00:02:17,209 running dist_info 2023-08-16T00:02:17,216 creating /tmp/pip-modern-metadata-ar55mgad/MDAnalysis.egg-info 2023-08-16T00:02:17,222 writing /tmp/pip-modern-metadata-ar55mgad/MDAnalysis.egg-info/PKG-INFO 2023-08-16T00:02:17,226 writing dependency_links to /tmp/pip-modern-metadata-ar55mgad/MDAnalysis.egg-info/dependency_links.txt 2023-08-16T00:02:17,229 writing requirements to /tmp/pip-modern-metadata-ar55mgad/MDAnalysis.egg-info/requires.txt 2023-08-16T00:02:17,230 writing top-level names to /tmp/pip-modern-metadata-ar55mgad/MDAnalysis.egg-info/top_level.txt 2023-08-16T00:02:17,232 writing manifest file '/tmp/pip-modern-metadata-ar55mgad/MDAnalysis.egg-info/SOURCES.txt' 2023-08-16T00:02:17,271 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,271 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,272 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,272 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,272 dependency 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manifest: the path must be relative 2023-08-16T00:02:17,292 dependency /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,292 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,293 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,293 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,293 dependency 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manifest: the path must be relative 2023-08-16T00:02:17,295 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,295 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,296 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:17,303 reading manifest file '/tmp/pip-modern-metadata-ar55mgad/MDAnalysis.egg-info/SOURCES.txt' 2023-08-16T00:02:17,305 reading manifest template 'MANIFEST.in' 2023-08-16T00:02:17,453 warning: no previously-included files matching 'doc/html/html' found anywhere in distribution 2023-08-16T00:02:17,455 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-08-16T00:02:17,457 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-08-16T00:02:17,459 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2023-08-16T00:02:17,461 warning: no previously-included files matching '*~' found anywhere in distribution 2023-08-16T00:02:17,462 warning: no previously-included files matching '.git' found anywhere in distribution 2023-08-16T00:02:17,463 adding license file 'LICENSE' 2023-08-16T00:02:17,463 adding license file 'AUTHORS' 2023-08-16T00:02:17,481 writing manifest file '/tmp/pip-modern-metadata-ar55mgad/MDAnalysis.egg-info/SOURCES.txt' 2023-08-16T00:02:17,483 creating '/tmp/pip-modern-metadata-ar55mgad/MDAnalysis-2.6.0.dist-info' 2023-08-16T00:02:17,702 Preparing metadata (pyproject.toml): finished with status 'done' 2023-08-16T00:02:17,712 Source in /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b has version 2.6.0, which satisfies requirement mdanalysis==2.6.0 from https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz 2023-08-16T00:02:17,713 Removed mdanalysis==2.6.0 from https://files.pythonhosted.org/packages/b8/1b/12f34fc28e41c12d05f299012fed63cedf2d733057ca5ea7ef1854efb027/MDAnalysis-2.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-b9zzpblj' 2023-08-16T00:02:17,722 Created temporary directory: /tmp/pip-unpack-iw1l5257 2023-08-16T00:02:17,723 Building wheels for collected packages: mdanalysis 2023-08-16T00:02:17,727 Created temporary directory: /tmp/pip-wheel-yr1emjli 2023-08-16T00:02:17,727 Destination directory: /tmp/pip-wheel-yr1emjli 2023-08-16T00:02:17,729 Building wheel for mdanalysis (pyproject.toml): started 2023-08-16T00:02:17,730 Running command Building wheel for mdanalysis (pyproject.toml) 2023-08-16T00:02:20,117 Attempting to autodetect OpenMP support... Compiler supports OpenMP 2023-08-16T00:02:20,118 Will attempt to use Cython. 2023-08-16T00:02:20,244 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:80: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2023-08-16T00:02:20,244 corresp(dist, value, root_dir) 2023-08-16T00:02:20,485 running bdist_wheel 2023-08-16T00:02:20,511 running build 2023-08-16T00:02:20,511 running build_py 2023-08-16T00:02:20,518 creating build 2023-08-16T00:02:20,519 creating build/lib.linux-armv7l-cpython-39 2023-08-16T00:02:20,520 creating build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-08-16T00:02:20,522 copying MDAnalysis/units.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-08-16T00:02:20,524 copying MDAnalysis/due.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-08-16T00:02:20,527 copying MDAnalysis/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-08-16T00:02:20,529 copying MDAnalysis/exceptions.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-08-16T00:02:20,531 copying MDAnalysis/version.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-08-16T00:02:20,533 copying MDAnalysis/authors.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis 2023-08-16T00:02:20,537 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,538 copying MDAnalysis/topology/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,541 copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,543 copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,546 copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,549 copying MDAnalysis/topology/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,551 copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,553 copying MDAnalysis/topology/tables.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,556 copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,558 copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,561 copying MDAnalysis/topology/guessers.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,564 copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,566 copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,569 copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,572 copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,574 copying MDAnalysis/topology/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,577 copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,579 copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,582 copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,584 copying MDAnalysis/topology/GROParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,586 copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,589 copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,591 copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,593 copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,596 copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,597 copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,600 copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,602 copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,604 copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology 2023-08-16T00:02:20,607 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,609 copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,611 copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,613 copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,615 copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,617 copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,620 copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,622 copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,624 copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,626 copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations 2023-08-16T00:02:20,630 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,631 copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,633 copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,636 copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,638 copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,641 copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,643 copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,646 copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,648 copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,650 copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,652 copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,654 copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,656 copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,658 copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,661 copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,663 copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,666 copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,667 copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,669 copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,672 copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,674 copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,676 copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,678 copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,679 copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,681 copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,684 copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,686 copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,688 copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,690 copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,691 copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,696 copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,698 copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,700 copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,703 copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:20,706 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,707 copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,710 copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,712 copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,715 copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,718 copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,720 copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,726 copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,729 copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,731 copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core 2023-08-16T00:02:20,736 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-08-16T00:02:20,737 copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-08-16T00:02:20,739 copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-08-16T00:02:20,741 copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-08-16T00:02:20,743 copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-08-16T00:02:20,745 copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-08-16T00:02:20,747 copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-08-16T00:02:20,748 copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections 2023-08-16T00:02:20,751 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,752 copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,755 copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,757 copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,760 copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,764 copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,766 copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,768 copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,771 copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,774 copying MDAnalysis/analysis/gnm.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,776 copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,779 copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,782 copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,785 copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,788 copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,791 copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,793 copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,795 copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,799 copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,803 copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,805 copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,808 copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,811 copying MDAnalysis/analysis/contacts.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,814 copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,817 copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:02:20,820 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-08-16T00:02:20,821 copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-08-16T00:02:20,825 copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-08-16T00:02:20,827 copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-08-16T00:02:20,830 copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-08-16T00:02:20,833 copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-08-16T00:02:20,836 copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-08-16T00:02:20,838 copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters 2023-08-16T00:02:20,841 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization 2023-08-16T00:02:20,843 copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization 2023-08-16T00:02:20,845 copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization 2023-08-16T00:02:20,847 copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization 2023-08-16T00:02:20,852 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-08-16T00:02:20,853 copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-08-16T00:02:20,856 copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-08-16T00:02:20,858 copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-08-16T00:02:20,861 copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-08-16T00:02:20,864 copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary 2023-08-16T00:02:20,868 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,869 copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,872 copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,874 copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,878 copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,882 copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,885 copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,887 copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,889 copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,893 copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,895 copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,899 copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:20,903 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/tests 2023-08-16T00:02:20,905 copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/tests 2023-08-16T00:02:20,907 copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/tests 2023-08-16T00:02:20,909 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-08-16T00:02:20,911 copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-08-16T00:02:20,914 copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-08-16T00:02:20,917 copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-08-16T00:02:20,919 copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr 2023-08-16T00:02:20,922 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-08-16T00:02:20,923 copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-08-16T00:02:20,925 copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-08-16T00:02:20,928 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy 2023-08-16T00:02:20,929 copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy 2023-08-16T00:02:20,931 copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy 2023-08-16T00:02:20,935 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:20,936 copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:20,939 copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:20,941 copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:20,944 copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:20,947 copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:20,950 copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:20,953 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-08-16T00:02:20,954 copying MDAnalysis/analysis/hole2/hole.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-08-16T00:02:20,958 copying MDAnalysis/analysis/hole2/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-08-16T00:02:20,960 copying MDAnalysis/analysis/hole2/templates.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-08-16T00:02:20,963 copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2 2023-08-16T00:02:20,966 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:02:20,967 copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:02:20,971 copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:02:20,974 copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:02:20,977 copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:02:20,980 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds 2023-08-16T00:02:20,981 copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds 2023-08-16T00:02:20,983 copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds 2023-08-16T00:02:20,986 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-08-16T00:02:20,987 copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-08-16T00:02:20,990 copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-08-16T00:02:20,992 copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-08-16T00:02:20,995 copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-08-16T00:02:20,997 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:02:20,998 copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:02:21,001 copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:02:21,003 copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:02:21,006 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,007 copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,009 running egg_info 2023-08-16T00:02:21,015 writing MDAnalysis.egg-info/PKG-INFO 2023-08-16T00:02:21,019 writing dependency_links to MDAnalysis.egg-info/dependency_links.txt 2023-08-16T00:02:21,021 writing requirements to MDAnalysis.egg-info/requires.txt 2023-08-16T00:02:21,022 writing top-level names to MDAnalysis.egg-info/top_level.txt 2023-08-16T00:02:21,045 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,046 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,046 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,046 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,047 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,048 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the 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/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,050 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,050 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,050 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,051 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,051 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,052 dependency /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,052 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,052 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,053 dependency 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manifest: the path must be relative 2023-08-16T00:02:21,068 dependency /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,068 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,069 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,069 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,069 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,070 dependency /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2023-08-16T00:02:21,076 reading manifest file 'MDAnalysis.egg-info/SOURCES.txt' 2023-08-16T00:02:21,088 reading manifest template 'MANIFEST.in' 2023-08-16T00:02:21,259 warning: no previously-included files matching 'doc/html/html' found anywhere in distribution 2023-08-16T00:02:21,262 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-08-16T00:02:21,265 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-08-16T00:02:21,268 warning: no previously-included files matching '*.pyd' found anywhere in distribution 2023-08-16T00:02:21,270 warning: no previously-included files matching '*~' found anywhere in distribution 2023-08-16T00:02:21,273 warning: no previously-included files matching '.git' found anywhere in distribution 2023-08-16T00:02:21,273 adding license file 'LICENSE' 2023-08-16T00:02:21,274 adding license file 'AUTHORS' 2023-08-16T00:02:21,297 writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' 2023-08-16T00:02:21,301 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.clustering.include' is absent from the `packages` configuration. 2023-08-16T00:02:21,302 !! 2023-08-16T00:02:21,302 ******************************************************************************** 2023-08-16T00:02:21,302 ############################ 2023-08-16T00:02:21,302 # Package would be ignored # 2023-08-16T00:02:21,302 ############################ 2023-08-16T00:02:21,302 Python recognizes 'MDAnalysis.analysis.encore.clustering.include' as an importable package[^1], 2023-08-16T00:02:21,302 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,303 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,303 package, please make sure that 'MDAnalysis.analysis.encore.clustering.include' is explicitly added 2023-08-16T00:02:21,303 to the `packages` configuration field. 2023-08-16T00:02:21,303 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,303 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,303 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,304 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,304 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,304 If you don't want 'MDAnalysis.analysis.encore.clustering.include' to be distributed and are 2023-08-16T00:02:21,304 already explicitly excluding 'MDAnalysis.analysis.encore.clustering.include' via 2023-08-16T00:02:21,304 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,304 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,304 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,305 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,305 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,305 even if it does not contain any `.py` files. 2023-08-16T00:02:21,305 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,306 directory, all directories are treated like packages. 2023-08-16T00:02:21,306 ******************************************************************************** 2023-08-16T00:02:21,306 !! 2023-08-16T00:02:21,306 check.warn(importable) 2023-08-16T00:02:21,307 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.clustering.src' is absent from the `packages` configuration. 2023-08-16T00:02:21,307 !! 2023-08-16T00:02:21,307 ******************************************************************************** 2023-08-16T00:02:21,307 ############################ 2023-08-16T00:02:21,307 # Package would be ignored # 2023-08-16T00:02:21,307 ############################ 2023-08-16T00:02:21,308 Python recognizes 'MDAnalysis.analysis.encore.clustering.src' as an importable package[^1], 2023-08-16T00:02:21,308 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,308 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,308 package, please make sure that 'MDAnalysis.analysis.encore.clustering.src' is explicitly added 2023-08-16T00:02:21,308 to the `packages` configuration field. 2023-08-16T00:02:21,308 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,308 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,309 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,309 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,309 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,309 If you don't want 'MDAnalysis.analysis.encore.clustering.src' to be distributed and are 2023-08-16T00:02:21,309 already explicitly excluding 'MDAnalysis.analysis.encore.clustering.src' via 2023-08-16T00:02:21,309 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,310 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,310 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,310 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,310 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,310 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,311 even if it does not contain any `.py` files. 2023-08-16T00:02:21,311 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,311 directory, all directories are treated like packages. 2023-08-16T00:02:21,311 ******************************************************************************** 2023-08-16T00:02:21,311 !! 2023-08-16T00:02:21,311 check.warn(importable) 2023-08-16T00:02:21,312 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is absent from the `packages` configuration. 2023-08-16T00:02:21,312 !! 2023-08-16T00:02:21,312 ******************************************************************************** 2023-08-16T00:02:21,313 ############################ 2023-08-16T00:02:21,313 # Package would be ignored # 2023-08-16T00:02:21,313 ############################ 2023-08-16T00:02:21,313 Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.include' as an importable package[^1], 2023-08-16T00:02:21,313 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,313 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,313 package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is explicitly added 2023-08-16T00:02:21,313 to the `packages` configuration field. 2023-08-16T00:02:21,314 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,314 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,314 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,314 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,315 If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.include' to be distributed and are 2023-08-16T00:02:21,315 already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.include' via 2023-08-16T00:02:21,315 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,315 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,315 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,315 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,316 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,316 even if it does not contain any `.py` files. 2023-08-16T00:02:21,316 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,316 directory, all directories are treated like packages. 2023-08-16T00:02:21,316 ******************************************************************************** 2023-08-16T00:02:21,317 !! 2023-08-16T00:02:21,317 check.warn(importable) 2023-08-16T00:02:21,317 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is absent from the `packages` configuration. 2023-08-16T00:02:21,317 !! 2023-08-16T00:02:21,317 ******************************************************************************** 2023-08-16T00:02:21,317 ############################ 2023-08-16T00:02:21,318 # Package would be ignored # 2023-08-16T00:02:21,318 ############################ 2023-08-16T00:02:21,318 Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.src' as an importable package[^1], 2023-08-16T00:02:21,318 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,318 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,318 package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is explicitly added 2023-08-16T00:02:21,318 to the `packages` configuration field. 2023-08-16T00:02:21,319 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,319 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,319 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,319 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,319 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,319 If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.src' to be distributed and are 2023-08-16T00:02:21,319 already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.src' via 2023-08-16T00:02:21,320 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,320 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,320 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,320 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,320 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,321 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,321 even if it does not contain any `.py` files. 2023-08-16T00:02:21,321 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,321 directory, all directories are treated like packages. 2023-08-16T00:02:21,321 ******************************************************************************** 2023-08-16T00:02:21,321 !! 2023-08-16T00:02:21,321 check.warn(importable) 2023-08-16T00:02:21,322 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.formats.include' is absent from the `packages` configuration. 2023-08-16T00:02:21,322 !! 2023-08-16T00:02:21,322 ******************************************************************************** 2023-08-16T00:02:21,322 ############################ 2023-08-16T00:02:21,322 # Package would be ignored # 2023-08-16T00:02:21,322 ############################ 2023-08-16T00:02:21,322 Python recognizes 'MDAnalysis.lib.formats.include' as an importable package[^1], 2023-08-16T00:02:21,322 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,323 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,323 package, please make sure that 'MDAnalysis.lib.formats.include' is explicitly added 2023-08-16T00:02:21,323 to the `packages` configuration field. 2023-08-16T00:02:21,323 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,323 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,323 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,324 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,324 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,324 If you don't want 'MDAnalysis.lib.formats.include' to be distributed and are 2023-08-16T00:02:21,324 already explicitly excluding 'MDAnalysis.lib.formats.include' via 2023-08-16T00:02:21,324 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,324 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,324 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,325 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,325 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,325 even if it does not contain any `.py` files. 2023-08-16T00:02:21,325 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,326 directory, all directories are treated like packages. 2023-08-16T00:02:21,326 ******************************************************************************** 2023-08-16T00:02:21,326 !! 2023-08-16T00:02:21,326 check.warn(importable) 2023-08-16T00:02:21,326 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.formats.src' is absent from the `packages` configuration. 2023-08-16T00:02:21,326 !! 2023-08-16T00:02:21,326 ******************************************************************************** 2023-08-16T00:02:21,327 ############################ 2023-08-16T00:02:21,327 # Package would be ignored # 2023-08-16T00:02:21,327 ############################ 2023-08-16T00:02:21,327 Python recognizes 'MDAnalysis.lib.formats.src' as an importable package[^1], 2023-08-16T00:02:21,327 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,327 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,327 package, please make sure that 'MDAnalysis.lib.formats.src' is explicitly added 2023-08-16T00:02:21,327 to the `packages` configuration field. 2023-08-16T00:02:21,328 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,328 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,328 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,328 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,328 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,329 If you don't want 'MDAnalysis.lib.formats.src' to be distributed and are 2023-08-16T00:02:21,329 already explicitly excluding 'MDAnalysis.lib.formats.src' via 2023-08-16T00:02:21,329 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,329 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,329 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,329 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,329 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,330 even if it does not contain any `.py` files. 2023-08-16T00:02:21,330 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,330 directory, all directories are treated like packages. 2023-08-16T00:02:21,330 ******************************************************************************** 2023-08-16T00:02:21,330 !! 2023-08-16T00:02:21,331 check.warn(importable) 2023-08-16T00:02:21,331 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.include' is absent from the `packages` configuration. 2023-08-16T00:02:21,331 !! 2023-08-16T00:02:21,331 ******************************************************************************** 2023-08-16T00:02:21,331 ############################ 2023-08-16T00:02:21,331 # Package would be ignored # 2023-08-16T00:02:21,331 ############################ 2023-08-16T00:02:21,332 Python recognizes 'MDAnalysis.lib.include' as an importable package[^1], 2023-08-16T00:02:21,332 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,332 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,332 package, please make sure that 'MDAnalysis.lib.include' is explicitly added 2023-08-16T00:02:21,332 to the `packages` configuration field. 2023-08-16T00:02:21,332 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,333 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,333 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,333 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,333 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,333 If you don't want 'MDAnalysis.lib.include' to be distributed and are 2023-08-16T00:02:21,333 already explicitly excluding 'MDAnalysis.lib.include' via 2023-08-16T00:02:21,334 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,334 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,334 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,334 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,334 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,335 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,335 even if it does not contain any `.py` files. 2023-08-16T00:02:21,335 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,335 directory, all directories are treated like packages. 2023-08-16T00:02:21,335 ******************************************************************************** 2023-08-16T00:02:21,335 !! 2023-08-16T00:02:21,335 check.warn(importable) 2023-08-16T00:02:21,336 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.libmdanalysis' is absent from the `packages` configuration. 2023-08-16T00:02:21,336 !! 2023-08-16T00:02:21,336 ******************************************************************************** 2023-08-16T00:02:21,336 ############################ 2023-08-16T00:02:21,336 # Package would be ignored # 2023-08-16T00:02:21,336 ############################ 2023-08-16T00:02:21,336 Python recognizes 'MDAnalysis.lib.libmdanalysis' as an importable package[^1], 2023-08-16T00:02:21,337 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,337 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,337 package, please make sure that 'MDAnalysis.lib.libmdanalysis' is explicitly added 2023-08-16T00:02:21,337 to the `packages` configuration field. 2023-08-16T00:02:21,337 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,337 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,338 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,338 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,338 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,338 If you don't want 'MDAnalysis.lib.libmdanalysis' to be distributed and are 2023-08-16T00:02:21,339 already explicitly excluding 'MDAnalysis.lib.libmdanalysis' via 2023-08-16T00:02:21,339 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,339 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,339 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,339 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,340 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,340 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,340 even if it does not contain any `.py` files. 2023-08-16T00:02:21,340 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,340 directory, all directories are treated like packages. 2023-08-16T00:02:21,341 ******************************************************************************** 2023-08-16T00:02:21,341 !! 2023-08-16T00:02:21,341 check.warn(importable) 2023-08-16T00:02:21,341 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'MDAnalysis.lib.src.transformations' is absent from the `packages` configuration. 2023-08-16T00:02:21,341 !! 2023-08-16T00:02:21,342 ******************************************************************************** 2023-08-16T00:02:21,342 ############################ 2023-08-16T00:02:21,342 # Package would be ignored # 2023-08-16T00:02:21,342 ############################ 2023-08-16T00:02:21,342 Python recognizes 'MDAnalysis.lib.src.transformations' as an importable package[^1], 2023-08-16T00:02:21,342 but it is absent from setuptools' `packages` configuration. 2023-08-16T00:02:21,342 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-16T00:02:21,343 package, please make sure that 'MDAnalysis.lib.src.transformations' is explicitly added 2023-08-16T00:02:21,343 to the `packages` configuration field. 2023-08-16T00:02:21,343 Alternatively, you can also rely on setuptools' discovery methods 2023-08-16T00:02:21,343 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-16T00:02:21,343 instead of `find_packages(...)`/`find:`). 2023-08-16T00:02:21,343 You can read more about "package discovery" on setuptools documentation page: 2023-08-16T00:02:21,344 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-16T00:02:21,344 If you don't want 'MDAnalysis.lib.src.transformations' to be distributed and are 2023-08-16T00:02:21,344 already explicitly excluding 'MDAnalysis.lib.src.transformations' via 2023-08-16T00:02:21,344 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-16T00:02:21,344 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-16T00:02:21,345 combination with a more fine grained `package-data` configuration. 2023-08-16T00:02:21,345 You can read more about "package data files" on setuptools documentation page: 2023-08-16T00:02:21,345 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-16T00:02:21,345 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-16T00:02:21,345 even if it does not contain any `.py` files. 2023-08-16T00:02:21,346 On the other hand, currently there is no concept of package data 2023-08-16T00:02:21,346 directory, all directories are treated like packages. 2023-08-16T00:02:21,346 ******************************************************************************** 2023-08-16T00:02:21,346 !! 2023-08-16T00:02:21,346 check.warn(importable) 2023-08-16T00:02:21,346 copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-08-16T00:02:21,346 copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data 2023-08-16T00:02:21,347 copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:21,369 copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:21,371 copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:02:21,374 copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,397 copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,400 copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,422 copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,424 copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,426 copying MDAnalysis/lib/c_distances.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,462 copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,464 copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,476 copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,478 copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,503 copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,506 copying MDAnalysis/lib/qcprot.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,517 copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,519 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include 2023-08-16T00:02:21,520 copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include 2023-08-16T00:02:21,523 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis 2023-08-16T00:02:21,524 copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis 2023-08-16T00:02:21,526 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src 2023-08-16T00:02:21,526 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-08-16T00:02:21,527 copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-08-16T00:02:21,529 copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-08-16T00:02:21,531 copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-08-16T00:02:21,537 copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:21,550 copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:02:21,552 copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-08-16T00:02:21,569 copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-08-16T00:02:21,571 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include 2023-08-16T00:02:21,572 copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include 2023-08-16T00:02:21,574 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src 2023-08-16T00:02:21,575 copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src 2023-08-16T00:02:21,578 copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:02:21,592 copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:02:21,594 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include 2023-08-16T00:02:21,595 copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include 2023-08-16T00:02:21,597 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-08-16T00:02:21,598 copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-08-16T00:02:21,600 copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,629 copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,630 copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,633 copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,658 copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,660 copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,664 copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,689 copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,691 copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,695 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,697 copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,700 copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,704 copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,708 copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,712 copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,715 copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,718 copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,720 copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include 2023-08-16T00:02:21,723 creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-08-16T00:02:21,724 copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-08-16T00:02:21,726 copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-08-16T00:02:21,731 copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-08-16T00:02:21,734 copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-08-16T00:02:21,737 copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-08-16T00:02:21,761 running build_ext 2023-08-16T00:02:21,765 building 'MDAnalysis.lib.formats.libdcd' extension 2023-08-16T00:02:21,766 creating build/temp.linux-armv7l-cpython-39 2023-08-16T00:02:21,766 creating build/temp.linux-armv7l-cpython-39/MDAnalysis 2023-08-16T00:02:21,767 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib 2023-08-16T00:02:21,768 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats 2023-08-16T00:02:21,770 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:02:22,134 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:02:22,134 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:02:22,134 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:02:22,134 from MDAnalysis/lib/formats/libdcd.c:1118: 2023-08-16T00:02:22,134 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:02:22,135 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:02:22,135 | ^~~~~~~ 2023-08-16T00:02:22,194 In file included from MDAnalysis/lib/formats/libdcd.c:1125: 2023-08-16T00:02:22,194 MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’: 2023-08-16T00:02:22,195 MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-16T00:02:22,195 562 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT; 2023-08-16T00:02:22,195 | ^~ 2023-08-16T00:02:22,197 MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’: 2023-08-16T00:02:22,197 MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable] 2023-08-16T00:02:22,198 698 | struct tm *tmbuf; 2023-08-16T00:02:22,198 | ^~~~~ 2023-08-16T00:02:22,198 MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable] 2023-08-16T00:02:22,198 697 | time_t cur_time; 2023-08-16T00:02:22,198 | ^~~~~~~~ 2023-08-16T00:02:24,565 In file included from MDAnalysis/lib/formats/include/readdcd.h:25, 2023-08-16T00:02:24,565 from MDAnalysis/lib/formats/libdcd.c:1125: 2023-08-16T00:02:24,565 At top level: 2023-08-16T00:02:24,565 MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function] 2023-08-16T00:02:24,566 96 | static void swap2_aligned(void *v, long ndata) { 2023-08-16T00:02:24,566 | ^~~~~~~~~~~~~ 2023-08-16T00:02:24,566 MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function] 2023-08-16T00:02:24,566 32 | static void swap2_unaligned(void *v, long ndata) { 2023-08-16T00:02:24,566 | ^~~~~~~~~~~~~~~ 2023-08-16T00:02:24,566 In file included from MDAnalysis/lib/formats/libdcd.c:1124: 2023-08-16T00:02:24,566 MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function] 2023-08-16T00:02:24,567 453 | static int fio_write_str(fio_fd fd, const char *str) { 2023-08-16T00:02:24,567 | ^~~~~~~~~~~~~ 2023-08-16T00:02:24,567 MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function] 2023-08-16T00:02:24,567 449 | static int fio_read_int32(fio_fd fd, int *i) { 2023-08-16T00:02:24,567 | ^~~~~~~~~~~~~~ 2023-08-16T00:03:19,250 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:03:19,459 building 'MDAnalysis.lib.c_distances' extension 2023-08-16T00:03:19,460 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:03:19,824 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:03:19,825 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:03:19,825 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:03:19,825 from MDAnalysis/lib/c_distances.c:1118: 2023-08-16T00:03:19,825 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:03:19,825 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:03:19,826 | ^~~~~~~ 2023-08-16T00:04:09,161 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:04:09,376 building 'MDAnalysis.lib.c_distances_openmp' extension 2023-08-16T00:04:09,377 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPARALLEL -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:04:09,695 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:04:09,695 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:04:09,695 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:04:09,695 from MDAnalysis/lib/c_distances_openmp.c:1129: 2023-08-16T00:04:09,695 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:04:09,696 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:04:09,696 | ^~~~~~~ 2023-08-16T00:04:22,935 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.o -L/usr/lib -lm -lgomp -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so -fopenmp 2023-08-16T00:04:23,104 building 'MDAnalysis.lib.qcprot' extension 2023-08-16T00:04:23,104 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:04:23,419 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:04:23,419 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:04:23,419 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:04:23,419 from MDAnalysis/lib/qcprot.c:1112: 2023-08-16T00:04:23,420 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:04:23,420 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:04:23,420 | ^~~~~~~ 2023-08-16T00:04:23,483 MDAnalysis/lib/qcprot.c: In function ‘__pyx_pf_10MDAnalysis_3lib_6qcprot_InnerProduct’: 2023-08-16T00:04:23,485 MDAnalysis/lib/qcprot.c:4948:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:04:23,485 4948 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { 2023-08-16T00:04:23,485 | ^ 2023-08-16T00:04:23,489 MDAnalysis/lib/qcprot.c:5156:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:04:23,490 5156 | for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { 2023-08-16T00:04:23,490 | ^ 2023-08-16T00:04:38,033 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:04:38,154 building 'MDAnalysis.lib._transformations' extension 2023-08-16T00:04:38,155 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src 2023-08-16T00:04:38,155 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations 2023-08-16T00:04:38,157 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:04:38,470 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:04:38,470 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:04:38,470 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:04:38,470 from MDAnalysis/lib/src/transformations/transformations.c:73: 2023-08-16T00:04:38,470 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:04:38,471 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:04:38,471 | ^~~~~~~ 2023-08-16T00:04:38,531 MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’: 2023-08-16T00:04:38,531 MDAnalysis/lib/src/transformations/transformations.c:1845: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,531 1845 | #pragma vector always 2023-08-16T00:04:38,531 | 2023-08-16T00:04:38,533 MDAnalysis/lib/src/transformations/transformations.c:1962: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,533 1962 | #pragma vector always 2023-08-16T00:04:38,534 | 2023-08-16T00:04:38,534 MDAnalysis/lib/src/transformations/transformations.c:1986: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,534 1986 | #pragma vector always 2023-08-16T00:04:38,534 | 2023-08-16T00:04:38,537 MDAnalysis/lib/src/transformations/transformations.c: In function ‘axis2tuple’: 2023-08-16T00:04:38,538 MDAnalysis/lib/src/transformations/transformations.c:2122:5: warning: ‘PyUnicode_GetSize’ is deprecated [-Wdeprecated-declarations] 2023-08-16T00:04:38,538 2122 | if (PyUnicode_Check(axes) && (PyUnicode_GetSize(axes) == 4)) { 2023-08-16T00:04:38,539 | ^~ 2023-08-16T00:04:38,539 In file included from /usr/include/python3.9/Python.h:97, 2023-08-16T00:04:38,539 from MDAnalysis/lib/src/transformations/transformations.c:68: 2023-08-16T00:04:38,539 /usr/include/python3.9/unicodeobject.h:177:43: note: declared here 2023-08-16T00:04:38,539 177 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_ssize_t) PyUnicode_GetSize( 2023-08-16T00:04:38,539 | ^~~~~~~~~~~~~~~~~ 2023-08-16T00:04:38,574 MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’: 2023-08-16T00:04:38,574 MDAnalysis/lib/src/transformations/transformations.c:3427: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,575 3427 | #pragma vector always 2023-08-16T00:04:38,575 | 2023-08-16T00:04:38,577 MDAnalysis/lib/src/transformations/transformations.c:3508: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,577 3508 | #pragma vector always 2023-08-16T00:04:38,577 | 2023-08-16T00:04:38,582 MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’: 2023-08-16T00:04:38,582 MDAnalysis/lib/src/transformations/transformations.c:3610: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,583 3610 | #pragma vector always 2023-08-16T00:04:38,583 | 2023-08-16T00:04:38,583 MDAnalysis/lib/src/transformations/transformations.c:3615: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,583 3615 | #pragma vector always 2023-08-16T00:04:38,583 | 2023-08-16T00:04:38,587 MDAnalysis/lib/src/transformations/transformations.c:3679: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,587 3679 | #pragma vector always 2023-08-16T00:04:38,587 | 2023-08-16T00:04:38,587 MDAnalysis/lib/src/transformations/transformations.c:3684: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas] 2023-08-16T00:04:38,587 3684 | #pragma vector always 2023-08-16T00:04:38,587 | 2023-08-16T00:04:38,655 At top level: 2023-08-16T00:04:38,655 MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function] 2023-08-16T00:04:38,655 910 | PyConverter_DoubleVector4Copy( 2023-08-16T00:04:38,656 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:04:38,656 MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function] 2023-08-16T00:04:38,656 804 | PyConverter_DoubleArrayOrNone( 2023-08-16T00:04:38,656 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:04:38,656 MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function] 2023-08-16T00:04:38,656 774 | PyConverter_DoubleArray( 2023-08-16T00:04:38,656 | ^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:04:44,447 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:04:44,574 building 'MDAnalysis.lib.formats.libmdaxdr' extension 2023-08-16T00:04:44,575 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src 2023-08-16T00:04:44,576 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:04:44,899 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:04:44,899 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:04:44,899 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:04:44,899 from MDAnalysis/lib/formats/libmdaxdr.c:1139: 2023-08-16T00:04:44,899 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:04:44,899 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:04:44,899 | ^~~~~~~ 2023-08-16T00:04:44,933 In file included from MDAnalysis/lib/formats/libmdaxdr.c:1145: 2023-08-16T00:04:44,934 MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:04:44,934 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:04:44,934 | 2023-08-16T00:04:44,936 In file included from MDAnalysis/lib/formats/libmdaxdr.c:1146: 2023-08-16T00:04:44,936 MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:04:44,936 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:04:44,936 | 2023-08-16T00:04:44,937 In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, 2023-08-16T00:04:44,937 from MDAnalysis/lib/formats/libmdaxdr.c:1146: 2023-08-16T00:04:44,937 MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:04:44,937 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:04:44,937 | 2023-08-16T00:04:44,938 In file included from MDAnalysis/lib/formats/libmdaxdr.c:1147: 2023-08-16T00:04:44,939 MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:04:44,939 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:04:44,939 | 2023-08-16T00:05:39,199 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:05:39,275 In file included from MDAnalysis/lib/formats/src/trr_seek.c:30: 2023-08-16T00:05:39,276 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:39,276 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:39,276 | 2023-08-16T00:05:39,280 In file included from MDAnalysis/lib/formats/src/trr_seek.c:31: 2023-08-16T00:05:39,281 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:39,281 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:39,281 | 2023-08-16T00:05:39,281 In file included from /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile_trr.h:42, 2023-08-16T00:05:39,281 from MDAnalysis/lib/formats/src/trr_seek.c:31: 2023-08-16T00:05:39,282 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:39,282 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:39,282 | 2023-08-16T00:05:39,284 MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’: 2023-08-16T00:05:39,285 MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable] 2023-08-16T00:05:39,285 39 | int result, framebytes, totalframebytes; 2023-08-16T00:05:39,285 | ^~~~~~~~~~~~~~~ 2023-08-16T00:05:39,285 MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable] 2023-08-16T00:05:39,285 38 | float time, lambda; 2023-08-16T00:05:39,286 | ^~~~~~ 2023-08-16T00:05:39,286 MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable] 2023-08-16T00:05:39,286 38 | float time, lambda; 2023-08-16T00:05:39,286 | ^~~~ 2023-08-16T00:05:39,390 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:05:39,505 In file included from MDAnalysis/lib/formats/src/xdrfile.c:62: 2023-08-16T00:05:39,505 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:39,505 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:39,505 | 2023-08-16T00:05:39,514 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’: 2023-08-16T00:05:39,515 MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-16T00:05:39,515 501 | while (size >= num && num_of_bits < 32) 2023-08-16T00:05:39,515 | ^~ 2023-08-16T00:05:39,516 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’: 2023-08-16T00:05:39,516 MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:05:39,516 547 | while (bytes[num_of_bytes] >= num) 2023-08-16T00:05:39,516 | ^~ 2023-08-16T00:05:39,517 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’: 2023-08-16T00:05:39,518 MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-16T00:05:39,518 656 | if (num_of_bits >= num_of_bytes * 8) 2023-08-16T00:05:39,518 | ^~ 2023-08-16T00:05:39,519 MDAnalysis/lib/formats/src/xdrfile.c:658:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-16T00:05:39,519 658 | for (i = 0; i < num_of_bytes; i++) 2023-08-16T00:05:39,519 | ^ 2023-08-16T00:05:39,519 MDAnalysis/lib/formats/src/xdrfile.c:666:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-16T00:05:39,520 666 | for (i = 0; i < num_of_bytes-1; i++) 2023-08-16T00:05:39,520 | ^ 2023-08-16T00:05:39,520 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’: 2023-08-16T00:05:39,521 MDAnalysis/lib/formats/src/xdrfile.c:706:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:05:39,521 706 | if (lastbits < num_of_bits) 2023-08-16T00:05:39,521 | ^ 2023-08-16T00:05:39,523 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2023-08-16T00:05:39,524 MDAnalysis/lib/formats/src/xdrfile.c:816:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:05:39,524 816 | if(size3>xfp->buf1size) 2023-08-16T00:05:39,524 | ^ 2023-08-16T00:05:39,526 MDAnalysis/lib/formats/src/xdrfile.c:868:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:05:39,526 868 | maxidx = (LASTIDXxfp->buf1size) 2023-08-16T00:05:39,532 | ^ 2023-08-16T00:05:39,537 MDAnalysis/lib/formats/src/xdrfile.c:1135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-16T00:05:39,537 1135 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2023-08-16T00:05:39,537 | ^ 2023-08-16T00:05:39,538 MDAnalysis/lib/formats/src/xdrfile.c:1141:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:05:39,538 1141 | maxidx = (LASTIDXxfp->buf1size) 2023-08-16T00:05:39,546 | ^ 2023-08-16T00:05:39,548 MDAnalysis/lib/formats/src/xdrfile.c:1368:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:05:39,548 1368 | maxidx = (LASTIDXxfp->buf1size) { 2023-08-16T00:05:39,556 | ^ 2023-08-16T00:05:39,562 MDAnalysis/lib/formats/src/xdrfile.c:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-16T00:05:39,562 1619 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2023-08-16T00:05:39,562 | ^ 2023-08-16T00:05:39,563 MDAnalysis/lib/formats/src/xdrfile.c:1624:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-16T00:05:39,564 1624 | maxidx = (LASTIDX maxsize) 2023-08-16T00:05:41,218 | ^ 2023-08-16T00:05:41,219 MDAnalysis/lib/formats/src/xdrfile.c:2335:15: note: ‘size’ was declared here 2023-08-16T00:05:41,219 2335 | unsigned int size; 2023-08-16T00:05:41,219 | ^~~~ 2023-08-16T00:05:41,651 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’: 2023-08-16T00:05:41,652 MDAnalysis/lib/formats/src/xdrfile.c:1157:21: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-16T00:05:41,652 1157 | abs(thiscoord[2] - prevcoord[2]) < larger) { 2023-08-16T00:05:41,652 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-08-16T00:05:41,653 MDAnalysis/lib/formats/src/xdrfile.c:1156:21: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-16T00:05:41,653 1156 | abs(thiscoord[1] - prevcoord[1]) < larger && 2023-08-16T00:05:41,653 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-08-16T00:05:41,654 MDAnalysis/lib/formats/src/xdrfile.c:1155:21: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-16T00:05:41,654 1155 | abs(thiscoord[0] - prevcoord[0]) < larger && 2023-08-16T00:05:41,654 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-08-16T00:05:42,407 MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’: 2023-08-16T00:05:42,408 MDAnalysis/lib/formats/src/xdrfile.c:1639:21: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-16T00:05:42,409 1639 | abs(thiscoord[2] - prevcoord[2]) < larger) { 2023-08-16T00:05:42,409 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-08-16T00:05:42,410 MDAnalysis/lib/formats/src/xdrfile.c:1638:21: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-16T00:05:42,410 1638 | abs(thiscoord[1] - prevcoord[1]) < larger && 2023-08-16T00:05:42,410 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-08-16T00:05:42,411 MDAnalysis/lib/formats/src/xdrfile.c:1637:21: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-16T00:05:42,411 1637 | abs(thiscoord[0] - prevcoord[0]) < larger && 2023-08-16T00:05:42,411 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2023-08-16T00:05:43,423 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:05:43,494 In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38: 2023-08-16T00:05:43,494 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:43,494 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:43,495 | 2023-08-16T00:05:43,499 In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39: 2023-08-16T00:05:43,499 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:43,499 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:43,500 | 2023-08-16T00:05:43,500 In file included from /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile_trr.h:42, 2023-08-16T00:05:43,500 from MDAnalysis/lib/formats/src/xdrfile_trr.c:39: 2023-08-16T00:05:43,500 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:43,501 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:43,501 | 2023-08-16T00:05:43,503 MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’: 2023-08-16T00:05:43,503 MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-16T00:05:43,503 78 | if (slen != strlen(version) + 1) 2023-08-16T00:05:43,503 | ^~ 2023-08-16T00:05:43,504 MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-16T00:05:43,504 86 | if (xdrfile_write_string(version, xd) != (strlen(version) + 1)) 2023-08-16T00:05:43,504 | ^~ 2023-08-16T00:05:43,520 MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’: 2023-08-16T00:05:43,520 MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized in this function [-Wuninitialized] 2023-08-16T00:05:43,520 408 | return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder); 2023-08-16T00:05:43,521 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:05:44,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:05:44,644 In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30: 2023-08-16T00:05:44,645 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:44,645 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:44,645 | 2023-08-16T00:05:44,656 In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31: 2023-08-16T00:05:44,656 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:44,656 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:44,656 | 2023-08-16T00:05:44,657 In file included from /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, 2023-08-16T00:05:44,657 from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31: 2023-08-16T00:05:44,657 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:44,657 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:44,657 | 2023-08-16T00:05:44,775 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:05:44,820 In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25: 2023-08-16T00:05:44,820 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:44,821 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:44,821 | 2023-08-16T00:05:44,830 In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26: 2023-08-16T00:05:44,831 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:44,831 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:44,831 | 2023-08-16T00:05:44,831 In file included from /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43, 2023-08-16T00:05:44,831 from MDAnalysis/lib/formats/src/xtc_seek.c:26: 2023-08-16T00:05:44,831 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment] 2023-08-16T00:05:44,832 5 | /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*- 2023-08-16T00:05:44,832 | 2023-08-16T00:05:44,984 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:05:45,206 building 'MDAnalysis.lib.formats.cython_util' extension 2023-08-16T00:05:45,207 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.o -std=c99 -O3 -funroll-loops -fsigned-zeros 2023-08-16T00:05:45,527 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:05:45,527 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:05:45,528 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:05:45,528 from MDAnalysis/lib/formats/cython_util.c:1129: 2023-08-16T00:05:45,528 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:05:45,528 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:05:45,528 | ^~~~~~~ 2023-08-16T00:06:09,822 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:06:09,983 building 'MDAnalysis.analysis.encore.cutils' extension 2023-08-16T00:06:09,983 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis 2023-08-16T00:06:09,984 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore 2023-08-16T00:06:09,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.o -std=c99 -funroll-loops -fsigned-zeros -O3 2023-08-16T00:06:10,294 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:06:10,294 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:06:10,294 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:06:10,294 from MDAnalysis/analysis/encore/cutils.c:1112: 2023-08-16T00:06:10,295 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:06:10,295 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:06:10,295 | ^~~~~~~ 2023-08-16T00:06:15,489 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:06:15,603 building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension 2023-08-16T00:06:15,604 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering 2023-08-16T00:06:15,604 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src 2023-08-16T00:06:15,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -funroll-loops -fsigned-zeros -O3 2023-08-16T00:06:15,949 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:06:15,950 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:06:15,950 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:06:15,950 from MDAnalysis/analysis/encore/clustering/affinityprop.c:1118: 2023-08-16T00:06:15,950 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:06:15,950 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:06:15,951 | ^~~~~~~ 2023-08-16T00:06:31,890 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -funroll-loops -fsigned-zeros -O3 2023-08-16T00:06:32,917 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:06:33,063 building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension 2023-08-16T00:06:33,063 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:06:33,064 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-08-16T00:06:33,065 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -funroll-loops -fsigned-zeros -O3 2023-08-16T00:06:33,774 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -funroll-loops -fsigned-zeros -O3 2023-08-16T00:06:34,089 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:06:34,089 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:06:34,090 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:06:34,090 from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:1118: 2023-08-16T00:06:34,090 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:06:34,090 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:06:34,090 | ^~~~~~~ 2023-08-16T00:06:41,871 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:06:42,009 building 'MDAnalysis.lib._cutil' extension 2023-08-16T00:06:42,011 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.o -O3 -funroll-loops -fsigned-zeros -std=c++11 2023-08-16T00:06:42,276 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:06:42,276 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:06:42,276 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:06:42,276 from MDAnalysis/lib/_cutil.cpp:1130: 2023-08-16T00:06:42,276 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:06:42,277 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:06:42,277 | ^~~~~~~ 2023-08-16T00:06:45,326 In file included from MDAnalysis/lib/_cutil.cpp:1156: 2023-08-16T00:06:45,326 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,326 827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,326 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,327 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,327 791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,327 | ^~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,327 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,327 764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,327 | ^~~~~~~~~~~~~~ 2023-08-16T00:06:45,328 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,328 689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,328 | ^~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,328 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,328 647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,329 | ^~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,329 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,329 618 | static void _calc_angle(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,329 | ^~~~~~~~~~~ 2023-08-16T00:06:45,329 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,329 596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,330 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,330 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,330 573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,330 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,330 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,330 557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2, 2023-08-16T00:06:45,331 | ^~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,331 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,331 505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref, 2023-08-16T00:06:45,331 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,331 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,332 472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref, 2023-08-16T00:06:45,332 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,332 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,332 448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref, 2023-08-16T00:06:45,332 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,332 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,332 424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref, 2023-08-16T00:06:45,333 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,333 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,333 399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf, 2023-08-16T00:06:45,333 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,334 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,334 381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf, 2023-08-16T00:06:45,334 | ^~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:06:45,334 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:116:13: warning: ‘void _ortho_pbc(float (*)[3], uint64_t, float*)’ defined but not used [-Wunused-function] 2023-08-16T00:06:45,334 116 | static void _ortho_pbc(coordinate* coords, uint64_t numcoords, float* box) 2023-08-16T00:06:45,334 | ^~~~~~~~~~ 2023-08-16T00:07:21,621 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:07:21,964 building 'MDAnalysis.lib._augment' extension 2023-08-16T00:07:21,965 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.o -O3 -funroll-loops -fsigned-zeros -std=c++11 2023-08-16T00:07:22,235 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:07:22,235 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:07:22,235 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:07:22,235 from MDAnalysis/lib/_augment.cpp:1125: 2023-08-16T00:07:22,236 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:07:22,236 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:07:22,236 | ^~~~~~~ 2023-08-16T00:07:52,809 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:07:53,121 building 'MDAnalysis.lib.nsgrid' extension 2023-08-16T00:07:53,121 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.o -O3 -funroll-loops -fsigned-zeros -std=c++11 2023-08-16T00:07:55,863 In file included from MDAnalysis/lib/nsgrid.cpp:1123: 2023-08-16T00:07:55,863 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,863 827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,863 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,864 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,864 791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,864 | ^~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,864 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,864 764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,865 | ^~~~~~~~~~~~~~ 2023-08-16T00:07:55,865 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,865 689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,865 | ^~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,865 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,865 647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,866 | ^~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,866 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,866 618 | static void _calc_angle(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,866 | ^~~~~~~~~~~ 2023-08-16T00:07:55,866 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,866 596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,867 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,867 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,867 573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,867 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,867 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,867 557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2, 2023-08-16T00:07:55,867 | ^~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,867 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,868 505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref, 2023-08-16T00:07:55,868 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,868 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,868 472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref, 2023-08-16T00:07:55,868 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,868 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,868 448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref, 2023-08-16T00:07:55,869 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,869 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,869 424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref, 2023-08-16T00:07:55,869 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,869 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,869 399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf, 2023-08-16T00:07:55,869 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:07:55,870 /tmp/pip-wheel-dra2eqln/mdanalysis_6bc344e8fc2a45c49f09e1520e179b5b/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function] 2023-08-16T00:07:55,870 381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf, 2023-08-16T00:07:55,870 | ^~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:08:27,268 In file included from /usr/include/c++/10/vector:72, 2023-08-16T00:08:27,268 from MDAnalysis/lib/nsgrid.cpp:1121: 2023-08-16T00:08:27,268 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-08-16T00:08:27,269 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-08-16T00:08:27,269 426 | vector<_Tp, _Alloc>:: 2023-08-16T00:08:27,269 | ^~~~~~~~~~~~~~~~~~~ 2023-08-16T00:08:27,306 In file included from /usr/include/c++/10/vector:67, 2023-08-16T00:08:27,306 from MDAnalysis/lib/nsgrid.cpp:1121: 2023-08-16T00:08:27,306 /usr/include/c++/10/bits/stl_vector.h: In function ‘void __pyx_f_10MDAnalysis_3lib_6nsgrid_9NSResults_add_neighbors(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, int, int, double)’: 2023-08-16T00:08:27,306 /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-08-16T00:08:27,306 1198 | _M_realloc_insert(end(), __x); 2023-08-16T00:08:27,306 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-08-16T00:08:27,347 In file included from /usr/include/c++/10/vector:72, 2023-08-16T00:08:27,348 from MDAnalysis/lib/nsgrid.cpp:1121: 2023-08-16T00:08:27,348 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-08-16T00:08:27,348 /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-08-16T00:08:27,348 426 | vector<_Tp, _Alloc>:: 2023-08-16T00:08:27,348 | ^~~~~~~~~~~~~~~~~~~ 2023-08-16T00:08:27,596 /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* __pyx_f_10MDAnalysis_3lib_6nsgrid___pyx_unpickle_NSResults__set_state(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, PyObject*)’: 2023-08-16T00:08:27,596 /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-08-16T00:08:27,596 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-08-16T00:08:27,596 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-16T00:08:31,300 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:08:31,640 building 'MDAnalysis.coordinates.timestep' extension 2023-08-16T00:08:31,641 creating build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates 2023-08-16T00:08:31,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/coordinates/timestep.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.o -O3 -funroll-loops -fsigned-zeros -std=c++11 2023-08-16T00:08:31,906 In file included from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, 2023-08-16T00:08:31,906 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-08-16T00:08:31,906 from /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-08-16T00:08:31,906 from MDAnalysis/coordinates/timestep.cpp:1126: 2023-08-16T00:08:31,906 /tmp/pip-build-env-4ni8pc0m/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-08-16T00:08:31,906 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-08-16T00:08:31,907 | ^~~~~~~ 2023-08-16T00:08:56,309 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so 2023-08-16T00:08:56,518 installing to build/bdist.linux-armv7l/wheel 2023-08-16T00:08:56,518 running install 2023-08-16T00:08:56,544 running install_lib 2023-08-16T00:08:56,550 creating build/bdist.linux-armv7l 2023-08-16T00:08:56,550 creating build/bdist.linux-armv7l/wheel 2023-08-16T00:08:56,552 creating build/bdist.linux-armv7l/wheel/MDAnalysis 2023-08-16T00:08:56,553 creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,554 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,557 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,559 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,562 creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-08-16T00:08:56,563 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-08-16T00:08:56,566 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-08-16T00:08:56,568 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-08-16T00:08:56,570 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr 2023-08-16T00:08:56,572 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,575 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,577 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,579 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,581 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,583 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,585 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,587 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,590 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,592 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,595 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,597 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,599 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,602 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,604 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,606 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,608 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,611 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,613 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,615 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,618 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,620 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,622 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,625 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,627 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology 2023-08-16T00:08:56,630 creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,631 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,633 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,636 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,638 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,641 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,643 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,646 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,647 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,650 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations 2023-08-16T00:08:56,653 creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,654 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,656 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,660 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,662 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,665 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,668 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,670 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,672 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,675 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,677 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,680 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,683 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,685 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,688 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,690 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,693 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,694 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,696 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,699 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,701 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,723 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,725 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,727 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,729 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,731 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,733 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,736 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,738 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,758 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,760 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,763 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,764 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,766 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,770 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,773 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,775 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,777 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates 2023-08-16T00:08:56,781 creating build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,782 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,785 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,789 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,793 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,797 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,799 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,805 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,808 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,810 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core 2023-08-16T00:08:56,815 creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-08-16T00:08:56,816 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-08-16T00:08:56,818 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-08-16T00:08:56,821 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-08-16T00:08:56,822 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-08-16T00:08:56,824 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-08-16T00:08:56,827 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-08-16T00:08:56,829 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections 2023-08-16T00:08:56,830 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-08-16T00:08:56,833 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-08-16T00:08:56,835 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,836 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,839 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,841 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,845 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-08-16T00:08:56,846 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-08-16T00:08:56,849 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-08-16T00:08:56,852 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-08-16T00:08:56,854 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data 2023-08-16T00:08:56,856 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,860 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,862 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,865 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,868 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,874 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,877 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,880 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,883 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,886 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy 2023-08-16T00:08:56,886 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy 2023-08-16T00:08:56,889 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy 2023-08-16T00:08:56,892 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:56,895 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,896 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,905 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-08-16T00:08:56,906 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-08-16T00:08:56,908 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-08-16T00:08:56,911 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-08-16T00:08:56,913 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-08-16T00:08:56,926 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-08-16T00:08:56,939 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-08-16T00:08:56,940 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering 2023-08-16T00:08:56,943 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include 2023-08-16T00:08:56,944 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include 2023-08-16T00:08:56,947 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src 2023-08-16T00:08:56,947 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src 2023-08-16T00:08:56,950 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,952 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,954 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,957 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,960 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,963 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,965 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:56,967 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:08:56,968 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:08:56,979 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:08:56,981 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:08:56,992 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:08:56,995 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:08:56,997 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction 2023-08-16T00:08:56,999 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include 2023-08-16T00:08:57,000 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include 2023-08-16T00:08:57,002 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-08-16T00:08:57,003 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src 2023-08-16T00:08:57,006 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore 2023-08-16T00:08:57,016 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,019 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-08-16T00:08:57,020 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-08-16T00:08:57,024 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-08-16T00:08:57,026 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-08-16T00:08:57,028 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2 2023-08-16T00:08:57,031 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,033 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,035 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,039 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,042 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:08:57,043 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:08:57,046 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:08:57,051 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:08:57,053 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds 2023-08-16T00:08:57,056 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,059 creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds 2023-08-16T00:08:57,060 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds 2023-08-16T00:08:57,062 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds 2023-08-16T00:08:57,063 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,066 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,068 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,071 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,073 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis 2023-08-16T00:08:57,076 creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-08-16T00:08:57,077 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-08-16T00:08:57,080 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-08-16T00:08:57,082 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-08-16T00:08:57,085 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-08-16T00:08:57,087 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-08-16T00:08:57,090 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-08-16T00:08:57,091 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters 2023-08-16T00:08:57,094 creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization 2023-08-16T00:08:57,095 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization 2023-08-16T00:08:57,097 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization 2023-08-16T00:08:57,100 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization 2023-08-16T00:08:57,103 creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-08-16T00:08:57,104 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-08-16T00:08:57,107 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-08-16T00:08:57,109 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-08-16T00:08:57,112 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-08-16T00:08:57,114 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary 2023-08-16T00:08:57,116 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-08-16T00:08:57,118 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-08-16T00:08:57,120 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-08-16T00:08:57,123 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,124 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,126 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,129 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,169 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,171 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,207 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis 2023-08-16T00:08:57,208 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis 2023-08-16T00:08:57,210 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,211 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,213 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,216 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,234 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,237 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,244 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,246 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,249 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,251 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,254 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,255 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,257 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,259 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,288 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,326 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,336 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,361 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,365 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,375 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,378 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,397 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,413 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,446 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include 2023-08-16T00:08:57,448 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include 2023-08-16T00:08:57,451 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,454 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,458 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib 2023-08-16T00:08:57,488 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src 2023-08-16T00:08:57,490 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations 2023-08-16T00:08:57,491 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations 2023-08-16T00:08:57,493 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations 2023-08-16T00:08:57,495 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations 2023-08-16T00:08:57,500 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,501 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,528 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,530 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,532 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,534 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,536 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,555 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,587 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,589 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,592 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,596 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,597 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,600 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,602 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,604 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,607 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,609 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,612 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,614 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include 2023-08-16T00:08:57,617 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,663 creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-08-16T00:08:57,663 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-08-16T00:08:57,665 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-08-16T00:08:57,668 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-08-16T00:08:57,670 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-08-16T00:08:57,672 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src 2023-08-16T00:08:57,675 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,693 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats 2023-08-16T00:08:57,721 creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests 2023-08-16T00:08:57,722 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests 2023-08-16T00:08:57,724 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests 2023-08-16T00:08:57,726 copying build/lib.linux-armv7l-cpython-39/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis 2023-08-16T00:08:57,727 running install_egg_info 2023-08-16T00:08:57,733 Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/MDAnalysis-2.6.0-py3.9.egg-info 2023-08-16T00:08:57,746 running install_scripts 2023-08-16T00:08:57,813 creating build/bdist.linux-armv7l/wheel/MDAnalysis-2.6.0.dist-info/WHEEL 2023-08-16T00:08:57,816 creating '/tmp/pip-wheel-yr1emjli/.tmp-nzz4dvr1/MDAnalysis-2.6.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-16T00:08:57,819 adding 'MDAnalysis/__init__.py' 2023-08-16T00:08:57,821 adding 'MDAnalysis/authors.py' 2023-08-16T00:08:57,822 adding 'MDAnalysis/due.py' 2023-08-16T00:08:57,823 adding 'MDAnalysis/exceptions.py' 2023-08-16T00:08:57,826 adding 'MDAnalysis/units.py' 2023-08-16T00:08:57,827 adding 'MDAnalysis/version.py' 2023-08-16T00:08:57,829 adding 'MDAnalysis/analysis/__init__.py' 2023-08-16T00:08:57,837 adding 'MDAnalysis/analysis/align.py' 2023-08-16T00:08:57,839 adding 'MDAnalysis/analysis/atomicdistances.py' 2023-08-16T00:08:57,842 adding 'MDAnalysis/analysis/base.py' 2023-08-16T00:08:57,845 adding 'MDAnalysis/analysis/bat.py' 2023-08-16T00:08:57,848 adding 'MDAnalysis/analysis/contacts.py' 2023-08-16T00:08:57,854 adding 'MDAnalysis/analysis/density.py' 2023-08-16T00:08:57,856 adding 'MDAnalysis/analysis/dielectric.py' 2023-08-16T00:08:57,858 adding 'MDAnalysis/analysis/diffusionmap.py' 2023-08-16T00:08:57,861 adding 'MDAnalysis/analysis/dihedrals.py' 2023-08-16T00:08:57,863 adding 'MDAnalysis/analysis/distances.py' 2023-08-16T00:08:57,866 adding 'MDAnalysis/analysis/gnm.py' 2023-08-16T00:08:57,869 adding 'MDAnalysis/analysis/helix_analysis.py' 2023-08-16T00:08:57,871 adding 'MDAnalysis/analysis/leaflet.py' 2023-08-16T00:08:57,873 adding 'MDAnalysis/analysis/lineardensity.py' 2023-08-16T00:08:57,877 adding 'MDAnalysis/analysis/msd.py' 2023-08-16T00:08:57,879 adding 'MDAnalysis/analysis/nucleicacids.py' 2023-08-16T00:08:57,881 adding 'MDAnalysis/analysis/nuclinfo.py' 2023-08-16T00:08:57,885 adding 'MDAnalysis/analysis/pca.py' 2023-08-16T00:08:57,888 adding 'MDAnalysis/analysis/polymer.py' 2023-08-16T00:08:57,897 adding 'MDAnalysis/analysis/psa.py' 2023-08-16T00:08:57,900 adding 'MDAnalysis/analysis/rdf.py' 2023-08-16T00:08:57,905 adding 'MDAnalysis/analysis/rms.py' 2023-08-16T00:08:57,910 adding 'MDAnalysis/analysis/waterdynamics.py' 2023-08-16T00:08:57,912 adding 'MDAnalysis/analysis/data/__init__.py' 2023-08-16T00:08:57,913 adding 'MDAnalysis/analysis/data/filenames.py' 2023-08-16T00:08:57,917 adding 'MDAnalysis/analysis/data/janin_ref_data.npy' 2023-08-16T00:08:57,923 adding 'MDAnalysis/analysis/data/rama_ref_data.npy' 2023-08-16T00:08:57,925 adding 'MDAnalysis/analysis/encore/__init__.py' 2023-08-16T00:08:57,927 adding 'MDAnalysis/analysis/encore/bootstrap.py' 2023-08-16T00:08:57,929 adding 'MDAnalysis/analysis/encore/confdistmatrix.py' 2023-08-16T00:08:57,931 adding 'MDAnalysis/analysis/encore/covariance.py' 2023-08-16T00:08:57,962 adding 'MDAnalysis/analysis/encore/cutils.c' 2023-08-16T00:08:58,026 adding 'MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:08:58,029 adding 'MDAnalysis/analysis/encore/cutils.pyx' 2023-08-16T00:08:58,035 adding 'MDAnalysis/analysis/encore/similarity.py' 2023-08-16T00:08:58,038 adding 'MDAnalysis/analysis/encore/utils.py' 2023-08-16T00:08:58,040 adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py' 2023-08-16T00:08:58,042 adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py' 2023-08-16T00:08:58,044 adding 'MDAnalysis/analysis/encore/clustering/__init__.py' 2023-08-16T00:08:58,085 adding 'MDAnalysis/analysis/encore/clustering/affinityprop.c' 2023-08-16T00:08:58,219 adding 'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:08:58,225 adding 'MDAnalysis/analysis/encore/clustering/affinityprop.pyx' 2023-08-16T00:08:58,227 adding 'MDAnalysis/analysis/encore/clustering/cluster.py' 2023-08-16T00:08:58,228 adding 'MDAnalysis/analysis/encore/clustering/include/ap.h' 2023-08-16T00:08:58,231 adding 'MDAnalysis/analysis/encore/clustering/src/ap.c' 2023-08-16T00:08:58,233 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py' 2023-08-16T00:08:58,234 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py' 2023-08-16T00:08:58,236 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py' 2023-08-16T00:08:58,271 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c' 2023-08-16T00:08:58,363 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:08:58,367 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx' 2023-08-16T00:08:58,369 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h' 2023-08-16T00:08:58,371 adding 'MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c' 2023-08-16T00:08:58,373 adding 'MDAnalysis/analysis/hbonds/__init__.py' 2023-08-16T00:08:58,374 adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py' 2023-08-16T00:08:58,377 adding 'MDAnalysis/analysis/hole2/__init__.py' 2023-08-16T00:08:58,382 adding 'MDAnalysis/analysis/hole2/hole.py' 2023-08-16T00:08:58,384 adding 'MDAnalysis/analysis/hole2/templates.py' 2023-08-16T00:08:58,388 adding 'MDAnalysis/analysis/hole2/utils.py' 2023-08-16T00:08:58,390 adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py' 2023-08-16T00:08:58,394 adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py' 2023-08-16T00:08:58,398 adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py' 2023-08-16T00:08:58,407 adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py' 2023-08-16T00:08:58,410 adding 'MDAnalysis/analysis/legacy/__init__.py' 2023-08-16T00:08:58,414 adding 'MDAnalysis/analysis/legacy/x3dna.py' 2023-08-16T00:08:58,417 adding 'MDAnalysis/auxiliary/EDR.py' 2023-08-16T00:08:58,419 adding 'MDAnalysis/auxiliary/XVG.py' 2023-08-16T00:08:58,422 adding 'MDAnalysis/auxiliary/__init__.py' 2023-08-16T00:08:58,427 adding 'MDAnalysis/auxiliary/base.py' 2023-08-16T00:08:58,429 adding 'MDAnalysis/auxiliary/core.py' 2023-08-16T00:08:58,431 adding 'MDAnalysis/converters/OpenMM.py' 2023-08-16T00:08:58,433 adding 'MDAnalysis/converters/OpenMMParser.py' 2023-08-16T00:08:58,435 adding 'MDAnalysis/converters/ParmEd.py' 2023-08-16T00:08:58,437 adding 'MDAnalysis/converters/ParmEdParser.py' 2023-08-16T00:08:58,442 adding 'MDAnalysis/converters/RDKit.py' 2023-08-16T00:08:58,444 adding 'MDAnalysis/converters/RDKitParser.py' 2023-08-16T00:08:58,446 adding 'MDAnalysis/converters/__init__.py' 2023-08-16T00:08:58,449 adding 'MDAnalysis/coordinates/CRD.py' 2023-08-16T00:08:58,452 adding 'MDAnalysis/coordinates/DCD.py' 2023-08-16T00:08:58,454 adding 'MDAnalysis/coordinates/DLPoly.py' 2023-08-16T00:08:58,455 adding 'MDAnalysis/coordinates/DMS.py' 2023-08-16T00:08:58,458 adding 'MDAnalysis/coordinates/FHIAIMS.py' 2023-08-16T00:08:58,459 adding 'MDAnalysis/coordinates/GMS.py' 2023-08-16T00:08:58,462 adding 'MDAnalysis/coordinates/GRO.py' 2023-08-16T00:08:58,464 adding 'MDAnalysis/coordinates/GSD.py' 2023-08-16T00:08:58,472 adding 'MDAnalysis/coordinates/H5MD.py' 2023-08-16T00:08:58,473 adding 'MDAnalysis/coordinates/INPCRD.py' 2023-08-16T00:08:58,477 adding 'MDAnalysis/coordinates/LAMMPS.py' 2023-08-16T00:08:58,479 adding 'MDAnalysis/coordinates/MMTF.py' 2023-08-16T00:08:58,481 adding 'MDAnalysis/coordinates/MOL2.py' 2023-08-16T00:08:58,482 adding 'MDAnalysis/coordinates/NAMDBIN.py' 2023-08-16T00:08:58,489 adding 'MDAnalysis/coordinates/PDB.py' 2023-08-16T00:08:58,492 adding 'MDAnalysis/coordinates/PDBQT.py' 2023-08-16T00:08:58,494 adding 'MDAnalysis/coordinates/PQR.py' 2023-08-16T00:08:58,496 adding 'MDAnalysis/coordinates/ParmEd.py' 2023-08-16T00:08:58,498 adding 'MDAnalysis/coordinates/TNG.py' 2023-08-16T00:08:58,505 adding 'MDAnalysis/coordinates/TRJ.py' 2023-08-16T00:08:58,507 adding 'MDAnalysis/coordinates/TRR.py' 2023-08-16T00:08:58,510 adding 'MDAnalysis/coordinates/TRZ.py' 2023-08-16T00:08:58,512 adding 'MDAnalysis/coordinates/TXYZ.py' 2023-08-16T00:08:58,514 adding 'MDAnalysis/coordinates/XDR.py' 2023-08-16T00:08:58,515 adding 'MDAnalysis/coordinates/XTC.py' 2023-08-16T00:08:58,518 adding 'MDAnalysis/coordinates/XYZ.py' 2023-08-16T00:08:58,523 adding 'MDAnalysis/coordinates/__init__.py' 2023-08-16T00:08:58,531 adding 'MDAnalysis/coordinates/base.py' 2023-08-16T00:08:58,535 adding 'MDAnalysis/coordinates/chain.py' 2023-08-16T00:08:58,538 adding 'MDAnalysis/coordinates/chemfiles.py' 2023-08-16T00:08:58,539 adding 'MDAnalysis/coordinates/core.py' 2023-08-16T00:08:58,543 adding 'MDAnalysis/coordinates/memory.py' 2023-08-16T00:08:58,544 adding 'MDAnalysis/coordinates/null.py' 2023-08-16T00:08:58,619 adding 'MDAnalysis/coordinates/timestep.cpp' 2023-08-16T00:08:58,871 adding 'MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:08:58,880 adding 'MDAnalysis/coordinates/timestep.pxd' 2023-08-16T00:08:58,883 adding 'MDAnalysis/coordinates/timestep.pyx' 2023-08-16T00:08:58,886 adding 'MDAnalysis/core/__init__.py' 2023-08-16T00:08:58,888 adding 'MDAnalysis/core/_get_readers.py' 2023-08-16T00:08:58,889 adding 'MDAnalysis/core/accessors.py' 2023-08-16T00:08:58,910 adding 'MDAnalysis/core/groups.py' 2023-08-16T00:08:58,918 adding 'MDAnalysis/core/selection.py' 2023-08-16T00:08:58,921 adding 'MDAnalysis/core/topology.py' 2023-08-16T00:08:58,933 adding 'MDAnalysis/core/topologyattrs.py' 2023-08-16T00:08:58,937 adding 'MDAnalysis/core/topologyobjects.py' 2023-08-16T00:08:58,945 adding 'MDAnalysis/core/universe.py' 2023-08-16T00:08:58,948 adding 'MDAnalysis/lib/NeighborSearch.py' 2023-08-16T00:08:58,949 adding 'MDAnalysis/lib/__init__.py' 2023-08-16T00:08:59,041 adding 'MDAnalysis/lib/_augment.cpp' 2023-08-16T00:08:59,337 adding 'MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:08:59,348 adding 'MDAnalysis/lib/_augment.pyx' 2023-08-16T00:08:59,446 adding 'MDAnalysis/lib/_cutil.cpp' 2023-08-16T00:08:59,829 adding 'MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:08:59,842 adding 'MDAnalysis/lib/_cutil.pxd' 2023-08-16T00:08:59,845 adding 'MDAnalysis/lib/_cutil.pyx' 2023-08-16T00:08:59,846 adding 'MDAnalysis/lib/_distopia.py' 2023-08-16T00:08:59,903 adding 'MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:09:00,018 adding 'MDAnalysis/lib/c_distances.c' 2023-08-16T00:09:00,421 adding 'MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:09:00,436 adding 'MDAnalysis/lib/c_distances.pyx' 2023-08-16T00:09:00,474 adding 'MDAnalysis/lib/c_distances_openmp.c' 2023-08-16T00:09:00,593 adding 'MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:09:00,599 adding 'MDAnalysis/lib/c_distances_openmp.pyx' 2023-08-16T00:09:00,601 adding 'MDAnalysis/lib/correlations.py' 2023-08-16T00:09:00,608 adding 'MDAnalysis/lib/distances.py' 2023-08-16T00:09:00,611 adding 'MDAnalysis/lib/log.py' 2023-08-16T00:09:00,613 adding 'MDAnalysis/lib/mdamath.py' 2023-08-16T00:09:00,718 adding 'MDAnalysis/lib/nsgrid.cpp' 2023-08-16T00:09:01,092 adding 'MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:09:01,108 adding 'MDAnalysis/lib/nsgrid.pyx' 2023-08-16T00:09:01,110 adding 'MDAnalysis/lib/picklable_file_io.py' 2023-08-16T00:09:01,112 adding 'MDAnalysis/lib/pkdtree.py' 2023-08-16T00:09:01,157 adding 'MDAnalysis/lib/qcprot.c' 2023-08-16T00:09:01,263 adding 'MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:09:01,269 adding 'MDAnalysis/lib/qcprot.pyx' 2023-08-16T00:09:01,277 adding 'MDAnalysis/lib/transformations.py' 2023-08-16T00:09:01,289 adding 'MDAnalysis/lib/util.py' 2023-08-16T00:09:01,291 adding 'MDAnalysis/lib/formats/__init__.py' 2023-08-16T00:09:01,377 adding 'MDAnalysis/lib/formats/cython_util.c' 2023-08-16T00:09:01,613 adding 'MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:09:01,621 adding 'MDAnalysis/lib/formats/cython_util.pxd' 2023-08-16T00:09:01,623 adding 'MDAnalysis/lib/formats/cython_util.pyx' 2023-08-16T00:09:01,743 adding 'MDAnalysis/lib/formats/libdcd.c' 2023-08-16T00:09:02,162 adding 'MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:09:02,177 adding 'MDAnalysis/lib/formats/libdcd.pxd' 2023-08-16T00:09:02,181 adding 'MDAnalysis/lib/formats/libdcd.pyx' 2023-08-16T00:09:02,301 adding 'MDAnalysis/lib/formats/libmdaxdr.c' 2023-08-16T00:09:02,754 adding 'MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so' 2023-08-16T00:09:02,770 adding 'MDAnalysis/lib/formats/libmdaxdr.pxd' 2023-08-16T00:09:02,773 adding 'MDAnalysis/lib/formats/libmdaxdr.pyx' 2023-08-16T00:09:02,776 adding 'MDAnalysis/lib/formats/include/endianswap.h' 2023-08-16T00:09:02,778 adding 'MDAnalysis/lib/formats/include/fastio.h' 2023-08-16T00:09:02,781 adding 'MDAnalysis/lib/formats/include/readdcd.h' 2023-08-16T00:09:02,782 adding 'MDAnalysis/lib/formats/include/trr_seek.h' 2023-08-16T00:09:02,785 adding 'MDAnalysis/lib/formats/include/xdrfile.h' 2023-08-16T00:09:02,787 adding 'MDAnalysis/lib/formats/include/xdrfile_trr.h' 2023-08-16T00:09:02,788 adding 'MDAnalysis/lib/formats/include/xdrfile_xtc.h' 2023-08-16T00:09:02,790 adding 'MDAnalysis/lib/formats/include/xtc_seek.h' 2023-08-16T00:09:02,792 adding 'MDAnalysis/lib/formats/src/trr_seek.c' 2023-08-16T00:09:02,798 adding 'MDAnalysis/lib/formats/src/xdrfile.c' 2023-08-16T00:09:02,801 adding 'MDAnalysis/lib/formats/src/xdrfile_trr.c' 2023-08-16T00:09:02,802 adding 'MDAnalysis/lib/formats/src/xdrfile_xtc.c' 2023-08-16T00:09:02,804 adding 'MDAnalysis/lib/formats/src/xtc_seek.c' 2023-08-16T00:09:02,808 adding 'MDAnalysis/lib/include/calc_distances.h' 2023-08-16T00:09:02,810 adding 'MDAnalysis/lib/libmdanalysis/__init__.pxd' 2023-08-16T00:09:02,812 adding 'MDAnalysis/lib/src/transformations/AUTHOR' 2023-08-16T00:09:02,813 adding 'MDAnalysis/lib/src/transformations/LICENCE' 2023-08-16T00:09:02,824 adding 'MDAnalysis/lib/src/transformations/transformations.c' 2023-08-16T00:09:02,827 adding 'MDAnalysis/selections/__init__.py' 2023-08-16T00:09:02,829 adding 'MDAnalysis/selections/base.py' 2023-08-16T00:09:02,830 adding 'MDAnalysis/selections/charmm.py' 2023-08-16T00:09:02,832 adding 'MDAnalysis/selections/gromacs.py' 2023-08-16T00:09:02,833 adding 'MDAnalysis/selections/jmol.py' 2023-08-16T00:09:02,835 adding 'MDAnalysis/selections/pymol.py' 2023-08-16T00:09:02,836 adding 'MDAnalysis/selections/vmd.py' 2023-08-16T00:09:02,838 adding 'MDAnalysis/tests/__init__.py' 2023-08-16T00:09:02,839 adding 'MDAnalysis/tests/datafiles.py' 2023-08-16T00:09:02,842 adding 'MDAnalysis/topology/CRDParser.py' 2023-08-16T00:09:02,843 adding 'MDAnalysis/topology/DLPolyParser.py' 2023-08-16T00:09:02,845 adding 'MDAnalysis/topology/DMSParser.py' 2023-08-16T00:09:02,847 adding 'MDAnalysis/topology/ExtendedPDBParser.py' 2023-08-16T00:09:02,848 adding 'MDAnalysis/topology/FHIAIMSParser.py' 2023-08-16T00:09:02,850 adding 'MDAnalysis/topology/GMSParser.py' 2023-08-16T00:09:02,851 adding 'MDAnalysis/topology/GROParser.py' 2023-08-16T00:09:02,853 adding 'MDAnalysis/topology/GSDParser.py' 2023-08-16T00:09:02,855 adding 'MDAnalysis/topology/HoomdXMLParser.py' 2023-08-16T00:09:02,858 adding 'MDAnalysis/topology/ITPParser.py' 2023-08-16T00:09:02,862 adding 'MDAnalysis/topology/LAMMPSParser.py' 2023-08-16T00:09:02,864 adding 'MDAnalysis/topology/MMTFParser.py' 2023-08-16T00:09:02,866 adding 'MDAnalysis/topology/MOL2Parser.py' 2023-08-16T00:09:02,867 adding 'MDAnalysis/topology/MinimalParser.py' 2023-08-16T00:09:02,869 adding 'MDAnalysis/topology/PDBParser.py' 2023-08-16T00:09:02,871 adding 'MDAnalysis/topology/PDBQTParser.py' 2023-08-16T00:09:02,873 adding 'MDAnalysis/topology/PQRParser.py' 2023-08-16T00:09:02,875 adding 'MDAnalysis/topology/PSFParser.py' 2023-08-16T00:09:02,877 adding 'MDAnalysis/topology/ParmEdParser.py' 2023-08-16T00:09:02,880 adding 'MDAnalysis/topology/TOPParser.py' 2023-08-16T00:09:02,882 adding 'MDAnalysis/topology/TPRParser.py' 2023-08-16T00:09:02,884 adding 'MDAnalysis/topology/TXYZParser.py' 2023-08-16T00:09:02,885 adding 'MDAnalysis/topology/XYZParser.py' 2023-08-16T00:09:02,888 adding 'MDAnalysis/topology/__init__.py' 2023-08-16T00:09:02,890 adding 'MDAnalysis/topology/base.py' 2023-08-16T00:09:02,891 adding 'MDAnalysis/topology/core.py' 2023-08-16T00:09:02,894 adding 'MDAnalysis/topology/guessers.py' 2023-08-16T00:09:02,896 adding 'MDAnalysis/topology/tables.py' 2023-08-16T00:09:02,898 adding 'MDAnalysis/topology/tpr/__init__.py' 2023-08-16T00:09:02,899 adding 'MDAnalysis/topology/tpr/obj.py' 2023-08-16T00:09:02,902 adding 'MDAnalysis/topology/tpr/setting.py' 2023-08-16T00:09:02,905 adding 'MDAnalysis/topology/tpr/utils.py' 2023-08-16T00:09:02,908 adding 'MDAnalysis/transformations/__init__.py' 2023-08-16T00:09:02,909 adding 'MDAnalysis/transformations/base.py' 2023-08-16T00:09:02,911 adding 'MDAnalysis/transformations/boxdimensions.py' 2023-08-16T00:09:02,913 adding 'MDAnalysis/transformations/fit.py' 2023-08-16T00:09:02,915 adding 'MDAnalysis/transformations/nojump.py' 2023-08-16T00:09:02,917 adding 'MDAnalysis/transformations/positionaveraging.py' 2023-08-16T00:09:02,918 adding 'MDAnalysis/transformations/rotate.py' 2023-08-16T00:09:02,920 adding 'MDAnalysis/transformations/translate.py' 2023-08-16T00:09:02,922 adding 'MDAnalysis/transformations/wrap.py' 2023-08-16T00:09:02,924 adding 'MDAnalysis/visualization/__init__.py' 2023-08-16T00:09:02,926 adding 'MDAnalysis/visualization/streamlines.py' 2023-08-16T00:09:02,929 adding 'MDAnalysis/visualization/streamlines_3D.py' 2023-08-16T00:09:02,932 adding 'MDAnalysis-2.6.0.dist-info/AUTHORS' 2023-08-16T00:09:02,936 adding 'MDAnalysis-2.6.0.dist-info/LICENSE' 2023-08-16T00:09:02,941 adding 'MDAnalysis-2.6.0.dist-info/METADATA' 2023-08-16T00:09:02,942 adding 'MDAnalysis-2.6.0.dist-info/WHEEL' 2023-08-16T00:09:02,943 adding 'MDAnalysis-2.6.0.dist-info/top_level.txt' 2023-08-16T00:09:02,947 adding 'MDAnalysis-2.6.0.dist-info/RECORD' 2023-08-16T00:09:03,113 removing build/bdist.linux-armv7l/wheel 2023-08-16T00:09:03,410 Building wheel for mdanalysis (pyproject.toml): finished with status 'done' 2023-08-16T00:09:03,645 Created wheel for mdanalysis: filename=MDAnalysis-2.6.0-cp39-cp39-linux_armv7l.whl size=9035345 sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a 2023-08-16T00:09:03,646 Stored in directory: /tmp/pip-ephem-wheel-cache-z3_4xfwt/wheels/ce/dd/71/e56066ce0e69ad8622c8d7167b531bc88b50da049b96688e43 2023-08-16T00:09:03,674 Successfully built mdanalysis 2023-08-16T00:09:03,949 Removed build tracker: '/tmp/pip-build-tracker-b9zzpblj'