2023-08-20T23:09:21,913 Created temporary directory: /tmp/pip-build-tracker-74oabdzg 2023-08-20T23:09:21,916 Initialized build tracking at /tmp/pip-build-tracker-74oabdzg 2023-08-20T23:09:21,917 Created build tracker: /tmp/pip-build-tracker-74oabdzg 2023-08-20T23:09:21,917 Entered build tracker: /tmp/pip-build-tracker-74oabdzg 2023-08-20T23:09:21,918 Created temporary directory: /tmp/pip-wheel-0chl41pi 2023-08-20T23:09:21,927 Created temporary directory: /tmp/pip-ephem-wheel-cache-1jtsdt7j 2023-08-20T23:09:21,992 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-20T23:09:22,000 2 location(s) to search for versions of pyhmmer: 2023-08-20T23:09:22,000 * https://pypi.org/simple/pyhmmer/ 2023-08-20T23:09:22,000 * https://www.piwheels.org/simple/pyhmmer/ 2023-08-20T23:09:22,001 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2023-08-20T23:09:22,002 Getting page https://pypi.org/simple/pyhmmer/ 2023-08-20T23:09:22,007 Found index url https://pypi.org/simple/ 2023-08-20T23:09:22,268 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2023-08-20T23:09:22,643 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/24/b9adc93653b83e3aa333588f8fe80cf6a058b97497a1a722e7a2cf5bc5b3/pyhmmer-0.1.0a1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,644 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/5a/594c4415860394f14b94137e10f3b6264fbd452a9ed00371fef870bdd68e/pyhmmer-0.1.0a1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,644 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/fe/4cf2fc8c5eb288fc72cbbc151d6da1b6f6e73fcba66842ed40532069902d/pyhmmer-0.1.0a1-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,645 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/c9/3f46d702c63e188539c28555af361e58ead4bff416799042c5ecf97805cb/pyhmmer-0.1.0a1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,645 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/12/f5d1ef8114cc5e0ab890d562768e9a6eb253b3e3bf258f8105c1d1841c73/pyhmmer-0.1.0a1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,646 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/b6/b92f44fcc712bc3dd621eccefe34d569a17f0ae73133f352a47fb2029c44/pyhmmer-0.1.0a1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,646 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/b6/0ca49ee6803d761eefc93528e9e8106151e06acf77ba9f669275c01863ac/pyhmmer-0.1.0a1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,647 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/0d/e2e21b3925af6887baf35a3e8993b5fe4863d93638138e7d5f236bcf2197/pyhmmer-0.1.0a1-cp38-cp38-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,647 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/3d/aac55b3f74ecd81ff3f619083c277ba40df45d8e6b8fc19d58eb74fab09b/pyhmmer-0.1.0a1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,648 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/cc/11cb714fad98ed3c1689ce83a31a29d744ed34c822af3ae63b2450e6b159/pyhmmer-0.1.0a1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,648 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/39/ca6e515c639a28632e52579a75aabe22d6bf2fe2a66cb2bd407fea81a1fe/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,649 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2023-08-20T23:09:22,649 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2023-08-20T23:09:22,650 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,651 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/a8/b31471655d0f09813748c9d8888587e3a1e1573f0c01c748676d03cc3c51/pyhmmer-0.1.0a2-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,651 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/1f/4b3aef73b2a9d4e07d56700a1a11794e6c92dd9018c1008b53e6c0e903ca/pyhmmer-0.1.0a2-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,652 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/83/a386d9e2350ec96fe9d0c6d8c274c72afda82745e5586926966b0c8e678f/pyhmmer-0.1.0a2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,652 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,653 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,653 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,654 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,654 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,655 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,655 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,656 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,657 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,658 Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2 2023-08-20T23:09:22,659 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,659 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl 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binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,662 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,662 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,663 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/67/4cb6f3ff89e47e060598f940d771799fdd7b1427544cd8da94ce895e9e4f/pyhmmer-0.1.0a3-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,663 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/61/e5f4b60a3ea29110b78672a95dac9bc165727c96732e34868f249e3422e1/pyhmmer-0.1.0a3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,664 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/37/df/8c9ccb8baeec522b05e956beaf899596ada02a3b383dc7a8d259b69e825b/pyhmmer-0.1.0a3-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,664 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5f/78/7cd9016de0f1aa1ee2da0200224cb886959e62cb97c933553cdc7fd2560f/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,665 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,666 Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3 2023-08-20T23:09:22,667 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl 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binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/90/3f2cc3b8d0d2400b4cb21655f124b1704f0b71b05a0680f6671b19ec566c/pyhmmer-0.1.0a4-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,670 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c2/da/bc625da5fac25a825470749a1a0465f15cceb4c702cb9efd8b69e76de5e7/pyhmmer-0.1.0a4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,670 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4c/35/22c6cb71edfcb82ef9d649d3adb11574f1f1ec930491242295c3916e7572/pyhmmer-0.1.0a4-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2023-08-20T23:09:22,671 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5a/91/1166980fd7eb5106ef2f34ede5ae0043daf2f276f05b0e9f93cc2d968827/pyhmmer-0.4.8.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.8 2023-08-20T23:09:22,825 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,826 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,826 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,827 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/07/442980e0fc7b4d336157fd80d843b3ad0b71709087b0daf910f2beee93cd/pyhmmer-0.4.9-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,827 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/41/f5b4ffcedcf3116573ff5740de4877723f0d69b7527ece4a794069de2235/pyhmmer-0.4.9-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,828 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,837 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,838 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,838 Skipping link: No binaries permitted for 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https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,917 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/8b/45d7eb18b457d0a36bacee35ad14a52af74c6ad5eab2901492996e9aa4b7/pyhmmer-0.7.0rc3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,917 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/75/25d2b67c70032fd8201bcead370e87316ed0531854aaf2b9f3061623fe33/pyhmmer-0.7.0rc3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,918 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/f3/a6f3b814701a7fc0652810dcdeaaf6a60aaf90d30de21ca7c2fb873b5762/pyhmmer-0.7.0rc3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,918 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,919 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:22,919 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/95/c6/12ae4d6960a04324826ca90ee7b6d880572e3591d5de09f2f68ba019fa17/pyhmmer-0.10.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.10.1 2023-08-20T23:09:23,078 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ad/90/7e2706935cad0e387214d34a599095426f6e44d1ad7e3ec9802d162c9ee0/pyhmmer-0.10.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,079 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/d7/437b2fc607ddcf697605a04df0b04b64a8fa1b0b55db229b7aca4f035969/pyhmmer-0.10.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,079 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/44/fc/1e1e14aa7a2ab693090cf1040ed246036f708cc48bf5701c57c296f297b7/pyhmmer-0.10.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,080 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/38/d3/831e1ee37974436d6ab742d436fdc6ff2df1fda3e7e97026f196d2593e1f/pyhmmer-0.10.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,080 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/e4/459d0124030c15a82159194edb62f5f6a010b10032235e3ffee709baa1fc/pyhmmer-0.10.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,081 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/9c/ac/e52c9389b4c55232e21c2a780dff1b7f015d55e44f52b20cf9c3750af94f/pyhmmer-0.10.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,084 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/57/4c/cd94d4d44ac7bcaa0441c43b497a12e245bc193bdd7e147c1052cd41f72e/pyhmmer-0.10.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,085 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/0c/c9f8d62fe5bda81f38b0c72d84086b40be4b0a136a40add396a0973392d0/pyhmmer-0.10.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,085 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/b9/d79db5cf812844b04d98038e6810d093280a46a1f77e75499110374b2923/pyhmmer-0.10.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,086 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/9c/ad5030125df8c305a9751ef243509a981f8d994fb35b3cdce754391e33b7/pyhmmer-0.10.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,086 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/90/65/4064f6b16fbb6fbc35eebab09b2ffd176bbdff7d8d6e0b4e56a8f6769648/pyhmmer-0.10.2-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,087 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9b/e2/3a3a4592324e1a19b8cdecf975205d4349d59a4bf46919cb088ee289ac40/pyhmmer-0.10.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,087 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/e2/4dee973513424feec48066ef207ae699509f234e0399c6a7cf706fa41245/pyhmmer-0.10.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,088 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/5f/076e18530a98a4794d72f061f09aeec598a29fc265316e99d62f0d1f604e/pyhmmer-0.10.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,088 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/25/6915d1f146edf0ff74781d3bb8c1647cb94985028a6748cf24f46715a89e/pyhmmer-0.10.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,089 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/78/03/bacf935a39087492a87510664ba04a3cbec2181299049c723b2f248bb1ad/pyhmmer-0.10.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,089 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/24/da/62855a8422e98a83d3c1dbc04413826424e8e423f91265260fa56020f5b7/pyhmmer-0.10.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,090 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/53/246a8e4591ab76bff76f58018bddca4b050ff1f82279083ce4aed6750d89/pyhmmer-0.10.2-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,090 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/a3/7f05801ed46cbcf805ae42a2a55d98b64fdd8295ebacbcbb3b1a7c8d35db/pyhmmer-0.10.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/a9/b9749543dd1845839f3aa1cacac9ff19eac8636c7c8411242631afa1d5f6/pyhmmer-0.10.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,091 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/66/bfc2e4c80e1681158948d466202a30ab7768494adacffa9697074a4cc7c1/pyhmmer-0.10.2-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/43/63/073760d0690bddaf5503fa4da4fd2584572b316553f7933ac5aaf5c3ddf5/pyhmmer-0.10.2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,092 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/f8/fef1c893c5fef72b50472ca932c4f81ca97150c12ce309c0a4125fd076a5/pyhmmer-0.10.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,093 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e3/e8/3fa6f94382093941d7bbaa194e2a8558d3d4a8078e03553104472dde89c3/pyhmmer-0.10.2-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,093 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/00/f8/07c56b73bad1406945aa8b47ac82fad065da971cd24678b1ef09708422fe/pyhmmer-0.10.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,095 Found link https://files.pythonhosted.org/packages/ec/58/b52d2eff6050d58fda2ed7aa9dadbb805cc9a36b1f034030257613cee316/pyhmmer-0.10.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.10.2 2023-08-20T23:09:23,096 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2023-08-20T23:09:23,097 Getting page https://www.piwheels.org/simple/pyhmmer/ 2023-08-20T23:09:23,099 Found index url https://www.piwheels.org/simple/ 2023-08-20T23:09:23,320 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2023-08-20T23:09:23,328 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.1-cp39-cp39-linux_armv7l.whl#sha256=080392c3128396a3e3807316deb771622a30cfd15912daa4618ccc307f573060 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,328 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.1-cp39-cp39-linux_armv6l.whl#sha256=080392c3128396a3e3807316deb771622a30cfd15912daa4618ccc307f573060 (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,329 Skipping link: No binaries permitted for pyhmmer: 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https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp39-cp39-linux_armv6l.whl#sha256=bc599f2682ac5c067c98071ddc2b813b7f322ee725995f783a9fa338baf42fca (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,331 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp37-cp37m-linux_armv7l.whl#sha256=d3dccbcc605d6187a81a48ed89b005185e14e946e16b01cc495a93a4a4e4893d (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,331 Skipping link: No binaries permitted for pyhmmer: https://www.piwheels.org/simple/pyhmmer/pyhmmer-0.10.0-cp37-cp37m-linux_armv6l.whl#sha256=d3dccbcc605d6187a81a48ed89b005185e14e946e16b01cc495a93a4a4e4893d (from https://www.piwheels.org/simple/pyhmmer/) (requires-python:>=3.6) 2023-08-20T23:09:23,332 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2023-08-20T23:09:23,332 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2023-08-20T23:09:23,381 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2023-08-20T23:09:23,412 Collecting pyhmmer==0.10.2 2023-08-20T23:09:23,417 Created temporary directory: /tmp/pip-unpack-4zyegjak 2023-08-20T23:09:23,592 Downloading pyhmmer-0.10.2.tar.gz (11.1 MB) 2023-08-20T23:09:33,486 Added pyhmmer==0.10.2 from https://files.pythonhosted.org/packages/ec/58/b52d2eff6050d58fda2ed7aa9dadbb805cc9a36b1f034030257613cee316/pyhmmer-0.10.2.tar.gz to build tracker '/tmp/pip-build-tracker-74oabdzg' 2023-08-20T23:09:33,495 Created temporary directory: /tmp/pip-build-env-tiw3hkgy 2023-08-20T23:09:33,515 Installing build dependencies: started 2023-08-20T23:09:33,517 Running command pip subprocess to install build dependencies 2023-08-20T23:09:36,289 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-08-20T23:09:37,243 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-20T23:09:39,143 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/b8/49/b3b29c52b09075fb77f69309763a563b4054d5808a3f3b95df3a62ef3d3f/setuptools-68.1.0-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2023-08-20T23:09:39,147 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/83/b0/18310b45f6eec3757c0554dbc1e03f2f7685c8a87831aea6adc1276faacc/setuptools-68.1.0.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2023-08-20T23:09:39,151 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/4f/ab/0bcfebdfc3bfa8554b2b2c97a555569c4c1ebc74ea288741ea8326c51906/setuptools-68.1.2-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2023-08-20T23:09:39,155 Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/19/20/d8dd9d8becaf3e2d6fdc17cc41870d5ada5ceda518996cf5968c2ca71bd8/setuptools-68.1.2.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8) 2023-08-20T23:09:39,780 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.1.2-py3-none-any.whl#sha256=9e076b8e4f5535e0e67305a15e9eb418006751b9bf0bb8d0a367d09ad0adf3a1 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2023-08-20T23:09:39,783 Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.1.0-py3-none-any.whl#sha256=0637a8df7f9d79ffffa7010fdd3db5ca70836acda6994af5f7edb9524838aa23 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8) 2023-08-20T23:09:41,231 Collecting setuptools>=46.4 2023-08-20T23:09:41,424 Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB) 2023-08-20T23:09:45,009 Collecting cython~=3.0 2023-08-20T23:09:45,883 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.0-cp37-cp37m-linux_armv7l.whl (4.3 MB) 2023-08-20T23:09:52,593 Installing collected packages: setuptools, cython 2023-08-20T23:10:02,827 Creating /tmp/pip-build-env-tiw3hkgy/overlay/bin 2023-08-20T23:10:02,832 changing mode of /tmp/pip-build-env-tiw3hkgy/overlay/bin/cygdb to 755 2023-08-20T23:10:02,837 changing mode of /tmp/pip-build-env-tiw3hkgy/overlay/bin/cython to 755 2023-08-20T23:10:02,842 changing mode of /tmp/pip-build-env-tiw3hkgy/overlay/bin/cythonize to 755 2023-08-20T23:10:02,887 Successfully installed cython-3.0.0 setuptools-68.0.0 2023-08-20T23:10:02,926 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-20T23:10:02,926 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-20T23:10:03,460 Installing build dependencies: finished with status 'done' 2023-08-20T23:10:03,471 Getting requirements to build wheel: started 2023-08-20T23:10:03,473 Running command Getting requirements to build wheel 2023-08-20T23:10:05,600 Getting requirements to build wheel: finished with status 'done' 2023-08-20T23:10:05,637 Installing backend dependencies: started 2023-08-20T23:10:05,639 Running command pip subprocess to install backend dependencies 2023-08-20T23:10:08,422 Using pip 23.1.2 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-08-20T23:10:09,361 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-20T23:10:10,371 Collecting wheel 2023-08-20T23:10:10,410 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.1-py3-none-any.whl (64 kB) 2023-08-20T23:10:16,022 Installing collected packages: wheel 2023-08-20T23:10:16,464 Creating /tmp/pip-build-env-tiw3hkgy/normal/bin 2023-08-20T23:10:16,469 changing mode of /tmp/pip-build-env-tiw3hkgy/normal/bin/wheel to 755 2023-08-20T23:10:16,496 Successfully installed wheel-0.41.1 2023-08-20T23:10:16,533 [notice] A new release of pip is available: 23.1.2 -> 23.2.1 2023-08-20T23:10:16,534 [notice] To update, run: python3 -m pip install --upgrade pip 2023-08-20T23:10:16,920 Installing backend dependencies: finished with status 'done' 2023-08-20T23:10:16,926 Created temporary directory: /tmp/pip-modern-metadata-6l2620ov 2023-08-20T23:10:16,933 Preparing metadata (pyproject.toml): started 2023-08-20T23:10:16,935 Running command Preparing metadata (pyproject.toml) 2023-08-20T23:10:18,964 running dist_info 2023-08-20T23:10:18,992 creating /tmp/pip-modern-metadata-6l2620ov/pyhmmer.egg-info 2023-08-20T23:10:19,002 writing /tmp/pip-modern-metadata-6l2620ov/pyhmmer.egg-info/PKG-INFO 2023-08-20T23:10:19,009 writing dependency_links to /tmp/pip-modern-metadata-6l2620ov/pyhmmer.egg-info/dependency_links.txt 2023-08-20T23:10:19,013 writing requirements to /tmp/pip-modern-metadata-6l2620ov/pyhmmer.egg-info/requires.txt 2023-08-20T23:10:19,015 writing top-level names to /tmp/pip-modern-metadata-6l2620ov/pyhmmer.egg-info/top_level.txt 2023-08-20T23:10:19,018 writing manifest file '/tmp/pip-modern-metadata-6l2620ov/pyhmmer.egg-info/SOURCES.txt' 2023-08-20T23:10:19,135 reading manifest file '/tmp/pip-modern-metadata-6l2620ov/pyhmmer.egg-info/SOURCES.txt' 2023-08-20T23:10:19,140 reading manifest template 'MANIFEST.in' 2023-08-20T23:10:20,470 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-08-20T23:10:20,476 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-08-20T23:10:20,480 no previously-included directories found matching 'vendor/easel/demotic' 2023-08-20T23:10:20,485 no previously-included directories found matching 'vendor/easel/documentation' 2023-08-20T23:10:20,489 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-08-20T23:10:20,493 no previously-included directories found matching 'vendor/easel/miniapps' 2023-08-20T23:10:20,497 no previously-included directories found matching 'vendor/easel/testsuite' 2023-08-20T23:10:20,501 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-08-20T23:10:20,506 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-08-20T23:10:20,511 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-08-20T23:10:20,516 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-08-20T23:10:20,521 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-08-20T23:10:20,525 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-08-20T23:10:20,529 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-08-20T23:10:20,530 adding license file 'COPYING' 2023-08-20T23:10:20,607 writing manifest file '/tmp/pip-modern-metadata-6l2620ov/pyhmmer.egg-info/SOURCES.txt' 2023-08-20T23:10:20,611 creating '/tmp/pip-modern-metadata-6l2620ov/pyhmmer-0.10.2.dist-info' 2023-08-20T23:10:20,959 Preparing metadata (pyproject.toml): finished with status 'done' 2023-08-20T23:10:20,977 Source in /tmp/pip-wheel-0chl41pi/pyhmmer_9b6f089383e74c2c928c3ffaaf432819 has version 0.10.2, which satisfies requirement pyhmmer==0.10.2 from https://files.pythonhosted.org/packages/ec/58/b52d2eff6050d58fda2ed7aa9dadbb805cc9a36b1f034030257613cee316/pyhmmer-0.10.2.tar.gz 2023-08-20T23:10:20,979 Removed pyhmmer==0.10.2 from https://files.pythonhosted.org/packages/ec/58/b52d2eff6050d58fda2ed7aa9dadbb805cc9a36b1f034030257613cee316/pyhmmer-0.10.2.tar.gz from build tracker '/tmp/pip-build-tracker-74oabdzg' 2023-08-20T23:10:20,998 Created temporary directory: /tmp/pip-unpack-tl48c55e 2023-08-20T23:10:20,999 Building wheels for collected packages: pyhmmer 2023-08-20T23:10:21,008 Created temporary directory: /tmp/pip-wheel-ymvbk03n 2023-08-20T23:10:21,008 Destination directory: /tmp/pip-wheel-ymvbk03n 2023-08-20T23:10:21,013 Building wheel for pyhmmer (pyproject.toml): started 2023-08-20T23:10:21,015 Running command Building wheel for pyhmmer (pyproject.toml) 2023-08-20T23:10:23,099 running bdist_wheel 2023-08-20T23:10:23,158 running build 2023-08-20T23:10:23,159 running build_py 2023-08-20T23:10:23,177 creating build 2023-08-20T23:10:23,178 creating build/lib.linux-armv7l-cpython-37 2023-08-20T23:10:23,179 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:23,181 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:23,185 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:23,194 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:23,199 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-20T23:10:23,200 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-20T23:10:23,205 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-20T23:10:23,210 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-20T23:10:23,213 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-20T23:10:23,217 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-20T23:10:23,222 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,224 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,228 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,232 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,238 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,243 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,246 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,249 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,254 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,259 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,263 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,268 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,271 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,276 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2023-08-20T23:10:23,282 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,284 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,289 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,293 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,298 copying pyhmmer/tests/test_easel/test_gencode.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,301 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,305 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,309 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,312 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,318 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,322 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,326 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,330 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,334 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,340 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2023-08-20T23:10:23,343 running egg_info 2023-08-20T23:10:23,354 writing pyhmmer.egg-info/PKG-INFO 2023-08-20T23:10:23,360 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2023-08-20T23:10:23,365 writing requirements to pyhmmer.egg-info/requires.txt 2023-08-20T23:10:23,368 writing top-level names to pyhmmer.egg-info/top_level.txt 2023-08-20T23:10:23,407 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-08-20T23:10:23,453 reading manifest template 'MANIFEST.in' 2023-08-20T23:10:24,697 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2023-08-20T23:10:24,704 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2023-08-20T23:10:24,710 no previously-included directories found matching 'vendor/easel/demotic' 2023-08-20T23:10:24,715 no previously-included directories found matching 'vendor/easel/documentation' 2023-08-20T23:10:24,720 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2023-08-20T23:10:24,725 no previously-included directories found matching 'vendor/easel/miniapps' 2023-08-20T23:10:24,731 no previously-included directories found matching 'vendor/easel/testsuite' 2023-08-20T23:10:24,736 no previously-included directories found matching 'vendor/hmmer/autobuild' 2023-08-20T23:10:24,741 no previously-included directories found matching 'vendor/hmmer/documentation' 2023-08-20T23:10:24,746 no previously-included directories found matching 'vendor/hmmer/contrib' 2023-08-20T23:10:24,751 no previously-included directories found matching 'vendor/hmmer/profmark' 2023-08-20T23:10:24,756 no previously-included directories found matching 'vendor/hmmer/testsuite' 2023-08-20T23:10:24,762 no previously-included directories found matching 'vendor/hmmer/test-speed' 2023-08-20T23:10:24,767 no previously-included directories found matching 'vendor/hmmer/tutorial' 2023-08-20T23:10:24,767 adding license file 'COPYING' 2023-08-20T23:10:24,870 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2023-08-20T23:10:24,892 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.fileobj' is absent from the `packages` configuration. 2023-08-20T23:10:24,892 !! 2023-08-20T23:10:24,893 ******************************************************************************** 2023-08-20T23:10:24,893 ############################ 2023-08-20T23:10:24,893 # Package would be ignored # 2023-08-20T23:10:24,894 ############################ 2023-08-20T23:10:24,894 Python recognizes 'pyhmmer.fileobj' as an importable package[^1], 2023-08-20T23:10:24,894 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,895 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,895 package, please make sure that 'pyhmmer.fileobj' is explicitly added 2023-08-20T23:10:24,896 to the `packages` configuration field. 2023-08-20T23:10:24,896 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,897 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,897 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,897 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,899 If you don't want 'pyhmmer.fileobj' to be distributed and are 2023-08-20T23:10:24,899 already explicitly excluding 'pyhmmer.fileobj' via 2023-08-20T23:10:24,899 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,899 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,900 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,900 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,901 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,902 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,902 even if it does not contain any `.py` files. 2023-08-20T23:10:24,902 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,903 directory, all directories are treated like packages. 2023-08-20T23:10:24,903 ******************************************************************************** 2023-08-20T23:10:24,904 !! 2023-08-20T23:10:24,904 check.warn(importable) 2023-08-20T23:10:24,904 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.reexports' is absent from the `packages` configuration. 2023-08-20T23:10:24,905 !! 2023-08-20T23:10:24,905 ******************************************************************************** 2023-08-20T23:10:24,905 ############################ 2023-08-20T23:10:24,906 # Package would be ignored # 2023-08-20T23:10:24,906 ############################ 2023-08-20T23:10:24,906 Python recognizes 'pyhmmer.reexports' as an importable package[^1], 2023-08-20T23:10:24,907 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,907 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,908 package, please make sure that 'pyhmmer.reexports' is explicitly added 2023-08-20T23:10:24,908 to the `packages` configuration field. 2023-08-20T23:10:24,908 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,909 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,909 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,910 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,910 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,911 If you don't want 'pyhmmer.reexports' to be distributed and are 2023-08-20T23:10:24,911 already explicitly excluding 'pyhmmer.reexports' via 2023-08-20T23:10:24,911 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,912 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,912 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,913 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,913 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,914 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,914 even if it does not contain any `.py` files. 2023-08-20T23:10:24,914 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,915 directory, all directories are treated like packages. 2023-08-20T23:10:24,915 ******************************************************************************** 2023-08-20T23:10:24,916 !! 2023-08-20T23:10:24,916 check.warn(importable) 2023-08-20T23:10:24,916 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data' is absent from the `packages` configuration. 2023-08-20T23:10:24,917 !! 2023-08-20T23:10:24,917 ******************************************************************************** 2023-08-20T23:10:24,917 ############################ 2023-08-20T23:10:24,918 # Package would be ignored # 2023-08-20T23:10:24,918 ############################ 2023-08-20T23:10:24,918 Python recognizes 'pyhmmer.tests.data' as an importable package[^1], 2023-08-20T23:10:24,919 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,919 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,919 package, please make sure that 'pyhmmer.tests.data' is explicitly added 2023-08-20T23:10:24,920 to the `packages` configuration field. 2023-08-20T23:10:24,920 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,921 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,921 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,921 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,922 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,923 If you don't want 'pyhmmer.tests.data' to be distributed and are 2023-08-20T23:10:24,923 already explicitly excluding 'pyhmmer.tests.data' via 2023-08-20T23:10:24,923 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,923 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,924 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,924 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,925 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,926 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,926 even if it does not contain any `.py` files. 2023-08-20T23:10:24,926 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,927 directory, all directories are treated like packages. 2023-08-20T23:10:24,927 ******************************************************************************** 2023-08-20T23:10:24,927 !! 2023-08-20T23:10:24,928 check.warn(importable) 2023-08-20T23:10:24,928 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms' is absent from the `packages` configuration. 2023-08-20T23:10:24,928 !! 2023-08-20T23:10:24,929 ******************************************************************************** 2023-08-20T23:10:24,929 ############################ 2023-08-20T23:10:24,929 # Package would be ignored # 2023-08-20T23:10:24,930 ############################ 2023-08-20T23:10:24,930 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package[^1], 2023-08-20T23:10:24,930 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,931 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,931 package, please make sure that 'pyhmmer.tests.data.hmms' is explicitly added 2023-08-20T23:10:24,931 to the `packages` configuration field. 2023-08-20T23:10:24,932 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,932 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,933 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,933 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,934 If you don't want 'pyhmmer.tests.data.hmms' to be distributed and are 2023-08-20T23:10:24,935 already explicitly excluding 'pyhmmer.tests.data.hmms' via 2023-08-20T23:10:24,935 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,935 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,935 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,936 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,937 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,937 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,938 even if it does not contain any `.py` files. 2023-08-20T23:10:24,938 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,938 directory, all directories are treated like packages. 2023-08-20T23:10:24,939 ******************************************************************************** 2023-08-20T23:10:24,939 !! 2023-08-20T23:10:24,940 check.warn(importable) 2023-08-20T23:10:24,940 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.bin' is absent from the `packages` configuration. 2023-08-20T23:10:24,940 !! 2023-08-20T23:10:24,941 ******************************************************************************** 2023-08-20T23:10:24,941 ############################ 2023-08-20T23:10:24,941 # Package would be ignored # 2023-08-20T23:10:24,942 ############################ 2023-08-20T23:10:24,942 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package[^1], 2023-08-20T23:10:24,942 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,943 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,943 package, please make sure that 'pyhmmer.tests.data.hmms.bin' is explicitly added 2023-08-20T23:10:24,943 to the `packages` configuration field. 2023-08-20T23:10:24,944 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,944 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,945 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,946 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,946 If you don't want 'pyhmmer.tests.data.hmms.bin' to be distributed and are 2023-08-20T23:10:24,946 already explicitly excluding 'pyhmmer.tests.data.hmms.bin' via 2023-08-20T23:10:24,947 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,947 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,947 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,948 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,948 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,949 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,950 even if it does not contain any `.py` files. 2023-08-20T23:10:24,950 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,950 directory, all directories are treated like packages. 2023-08-20T23:10:24,950 ******************************************************************************** 2023-08-20T23:10:24,951 !! 2023-08-20T23:10:24,951 check.warn(importable) 2023-08-20T23:10:24,952 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.db' is absent from the `packages` configuration. 2023-08-20T23:10:24,952 !! 2023-08-20T23:10:24,952 ******************************************************************************** 2023-08-20T23:10:24,953 ############################ 2023-08-20T23:10:24,953 # Package would be ignored # 2023-08-20T23:10:24,953 ############################ 2023-08-20T23:10:24,954 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package[^1], 2023-08-20T23:10:24,954 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,954 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,955 package, please make sure that 'pyhmmer.tests.data.hmms.db' is explicitly added 2023-08-20T23:10:24,955 to the `packages` configuration field. 2023-08-20T23:10:24,956 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,956 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,956 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,957 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,958 If you don't want 'pyhmmer.tests.data.hmms.db' to be distributed and are 2023-08-20T23:10:24,958 already explicitly excluding 'pyhmmer.tests.data.hmms.db' via 2023-08-20T23:10:24,958 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,959 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,959 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,959 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,960 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,961 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,961 even if it does not contain any `.py` files. 2023-08-20T23:10:24,961 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,962 directory, all directories are treated like packages. 2023-08-20T23:10:24,962 ******************************************************************************** 2023-08-20T23:10:24,963 !! 2023-08-20T23:10:24,963 check.warn(importable) 2023-08-20T23:10:24,963 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.txt' is absent from the `packages` configuration. 2023-08-20T23:10:24,964 !! 2023-08-20T23:10:24,964 ******************************************************************************** 2023-08-20T23:10:24,964 ############################ 2023-08-20T23:10:24,965 # Package would be ignored # 2023-08-20T23:10:24,965 ############################ 2023-08-20T23:10:24,965 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package[^1], 2023-08-20T23:10:24,966 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,966 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,967 package, please make sure that 'pyhmmer.tests.data.hmms.txt' is explicitly added 2023-08-20T23:10:24,967 to the `packages` configuration field. 2023-08-20T23:10:24,967 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,968 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,969 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,969 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,970 If you don't want 'pyhmmer.tests.data.hmms.txt' to be distributed and are 2023-08-20T23:10:24,970 already explicitly excluding 'pyhmmer.tests.data.hmms.txt' via 2023-08-20T23:10:24,970 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,971 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,971 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,971 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,972 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,973 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,973 even if it does not contain any `.py` files. 2023-08-20T23:10:24,973 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,974 directory, all directories are treated like packages. 2023-08-20T23:10:24,974 ******************************************************************************** 2023-08-20T23:10:24,974 !! 2023-08-20T23:10:24,975 check.warn(importable) 2023-08-20T23:10:24,975 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.hmms.txt2' is absent from the `packages` configuration. 2023-08-20T23:10:24,975 !! 2023-08-20T23:10:24,976 ******************************************************************************** 2023-08-20T23:10:24,976 ############################ 2023-08-20T23:10:24,977 # Package would be ignored # 2023-08-20T23:10:24,977 ############################ 2023-08-20T23:10:24,977 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package[^1], 2023-08-20T23:10:24,977 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,978 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,978 package, please make sure that 'pyhmmer.tests.data.hmms.txt2' is explicitly added 2023-08-20T23:10:24,979 to the `packages` configuration field. 2023-08-20T23:10:24,979 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,979 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,980 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,980 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,981 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,981 If you don't want 'pyhmmer.tests.data.hmms.txt2' to be distributed and are 2023-08-20T23:10:24,982 already explicitly excluding 'pyhmmer.tests.data.hmms.txt2' via 2023-08-20T23:10:24,982 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,983 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,983 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,985 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,985 even if it does not contain any `.py` files. 2023-08-20T23:10:24,986 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,986 directory, all directories are treated like packages. 2023-08-20T23:10:24,986 ******************************************************************************** 2023-08-20T23:10:24,987 !! 2023-08-20T23:10:24,987 check.warn(importable) 2023-08-20T23:10:24,988 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.jackhmmer' is absent from the `packages` configuration. 2023-08-20T23:10:24,988 !! 2023-08-20T23:10:24,989 ******************************************************************************** 2023-08-20T23:10:24,989 ############################ 2023-08-20T23:10:24,989 # Package would be ignored # 2023-08-20T23:10:24,990 ############################ 2023-08-20T23:10:24,990 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package[^1], 2023-08-20T23:10:24,990 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:24,991 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:24,991 package, please make sure that 'pyhmmer.tests.data.jackhmmer' is explicitly added 2023-08-20T23:10:24,992 to the `packages` configuration field. 2023-08-20T23:10:24,992 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:24,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:24,993 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:24,993 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:24,994 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:24,995 If you don't want 'pyhmmer.tests.data.jackhmmer' to be distributed and are 2023-08-20T23:10:24,995 already explicitly excluding 'pyhmmer.tests.data.jackhmmer' via 2023-08-20T23:10:24,996 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:24,996 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:24,996 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:24,997 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:24,997 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:24,998 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:24,999 even if it does not contain any `.py` files. 2023-08-20T23:10:24,999 On the other hand, currently there is no concept of package data 2023-08-20T23:10:24,999 directory, all directories are treated like packages. 2023-08-20T23:10:25,000 ******************************************************************************** 2023-08-20T23:10:25,001 !! 2023-08-20T23:10:25,002 check.warn(importable) 2023-08-20T23:10:25,002 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.msa' is absent from the `packages` configuration. 2023-08-20T23:10:25,002 !! 2023-08-20T23:10:25,003 ******************************************************************************** 2023-08-20T23:10:25,003 ############################ 2023-08-20T23:10:25,004 # Package would be ignored # 2023-08-20T23:10:25,004 ############################ 2023-08-20T23:10:25,004 Python recognizes 'pyhmmer.tests.data.msa' as an importable package[^1], 2023-08-20T23:10:25,005 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:25,005 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:25,006 package, please make sure that 'pyhmmer.tests.data.msa' is explicitly added 2023-08-20T23:10:25,007 to the `packages` configuration field. 2023-08-20T23:10:25,007 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:25,008 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:25,008 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:25,009 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:25,009 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:25,010 If you don't want 'pyhmmer.tests.data.msa' to be distributed and are 2023-08-20T23:10:25,010 already explicitly excluding 'pyhmmer.tests.data.msa' via 2023-08-20T23:10:25,010 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:25,012 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:25,013 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:25,014 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:25,015 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:25,016 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:25,016 even if it does not contain any `.py` files. 2023-08-20T23:10:25,017 On the other hand, currently there is no concept of package data 2023-08-20T23:10:25,017 directory, all directories are treated like packages. 2023-08-20T23:10:25,017 ******************************************************************************** 2023-08-20T23:10:25,018 !! 2023-08-20T23:10:25,018 check.warn(importable) 2023-08-20T23:10:25,019 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.seqs' is absent from the `packages` configuration. 2023-08-20T23:10:25,022 !! 2023-08-20T23:10:25,027 ******************************************************************************** 2023-08-20T23:10:25,027 ############################ 2023-08-20T23:10:25,028 # Package would be ignored # 2023-08-20T23:10:25,028 ############################ 2023-08-20T23:10:25,029 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package[^1], 2023-08-20T23:10:25,029 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:25,030 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:25,031 package, please make sure that 'pyhmmer.tests.data.seqs' is explicitly added 2023-08-20T23:10:25,031 to the `packages` configuration field. 2023-08-20T23:10:25,032 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:25,033 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:25,033 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:25,034 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:25,035 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:25,036 If you don't want 'pyhmmer.tests.data.seqs' to be distributed and are 2023-08-20T23:10:25,037 already explicitly excluding 'pyhmmer.tests.data.seqs' via 2023-08-20T23:10:25,037 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:25,038 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:25,038 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:25,039 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:25,040 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:25,041 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:25,042 even if it does not contain any `.py` files. 2023-08-20T23:10:25,042 On the other hand, currently there is no concept of package data 2023-08-20T23:10:25,043 directory, all directories are treated like packages. 2023-08-20T23:10:25,043 ******************************************************************************** 2023-08-20T23:10:25,044 !! 2023-08-20T23:10:25,045 check.warn(importable) 2023-08-20T23:10:25,045 /tmp/pip-build-env-tiw3hkgy/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'pyhmmer.tests.data.tables' is absent from the `packages` configuration. 2023-08-20T23:10:25,046 !! 2023-08-20T23:10:25,047 ******************************************************************************** 2023-08-20T23:10:25,048 ############################ 2023-08-20T23:10:25,048 # Package would be ignored # 2023-08-20T23:10:25,049 ############################ 2023-08-20T23:10:25,049 Python recognizes 'pyhmmer.tests.data.tables' as an importable package[^1], 2023-08-20T23:10:25,050 but it is absent from setuptools' `packages` configuration. 2023-08-20T23:10:25,050 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-20T23:10:25,052 package, please make sure that 'pyhmmer.tests.data.tables' is explicitly added 2023-08-20T23:10:25,053 to the `packages` configuration field. 2023-08-20T23:10:25,054 Alternatively, you can also rely on setuptools' discovery methods 2023-08-20T23:10:25,055 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-20T23:10:25,055 instead of `find_packages(...)`/`find:`). 2023-08-20T23:10:25,056 You can read more about "package discovery" on setuptools documentation page: 2023-08-20T23:10:25,057 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-20T23:10:25,057 If you don't want 'pyhmmer.tests.data.tables' to be distributed and are 2023-08-20T23:10:25,058 already explicitly excluding 'pyhmmer.tests.data.tables' via 2023-08-20T23:10:25,058 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-20T23:10:25,058 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-20T23:10:25,059 combination with a more fine grained `package-data` configuration. 2023-08-20T23:10:25,059 You can read more about "package data files" on setuptools documentation page: 2023-08-20T23:10:25,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-20T23:10:25,062 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-20T23:10:25,062 even if it does not contain any `.py` files. 2023-08-20T23:10:25,063 On the other hand, currently there is no concept of package data 2023-08-20T23:10:25,063 directory, all directories are treated like packages. 2023-08-20T23:10:25,064 ******************************************************************************** 2023-08-20T23:10:25,065 !! 2023-08-20T23:10:25,065 check.warn(importable) 2023-08-20T23:10:25,066 copying pyhmmer/_getid.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,066 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,067 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,067 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,068 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,068 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,069 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,071 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,072 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,072 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,072 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,073 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,073 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,075 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:10:25,078 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-20T23:10:25,080 copying pyhmmer/fileobj/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-20T23:10:25,084 copying pyhmmer/fileobj/bsd.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-20T23:10:25,088 copying pyhmmer/fileobj/bsd.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-20T23:10:25,092 copying pyhmmer/fileobj/linux.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-20T23:10:25,097 copying pyhmmer/fileobj/linux.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-20T23:10:25,101 copying pyhmmer/fileobj/util.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2023-08-20T23:10:25,105 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-20T23:10:25,106 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-20T23:10:25,110 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-20T23:10:25,114 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-20T23:10:25,118 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-20T23:10:25,123 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-20T23:10:25,127 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-20T23:10:25,131 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2023-08-20T23:10:25,135 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2023-08-20T23:10:25,139 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2023-08-20T23:10:25,141 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2023-08-20T23:10:25,145 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2023-08-20T23:10:25,147 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2023-08-20T23:10:25,151 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-20T23:10:25,153 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-20T23:10:25,160 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-20T23:10:25,167 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-20T23:10:25,175 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2023-08-20T23:10:25,286 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,288 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,299 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,304 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,308 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,314 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,321 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,333 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,339 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,343 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,350 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,358 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,368 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,375 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,379 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,387 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,394 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,633 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,692 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,697 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,822 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2023-08-20T23:10:25,970 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-20T23:10:25,972 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-20T23:10:25,987 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-20T23:10:25,997 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-20T23:10:26,010 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-20T23:10:26,022 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-20T23:10:26,037 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-20T23:10:26,059 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2023-08-20T23:10:26,311 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-20T23:10:26,313 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-20T23:10:26,321 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-20T23:10:26,332 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-20T23:10:26,341 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2023-08-20T23:10:26,532 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,533 copying pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,539 copying pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,544 copying pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,549 copying pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,554 copying pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,559 copying pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,565 copying pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,570 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,574 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,579 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2023-08-20T23:10:26,584 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-20T23:10:26,585 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-20T23:10:26,590 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-20T23:10:26,595 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-20T23:10:26,600 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2023-08-20T23:10:26,605 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-20T23:10:26,607 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-20T23:10:26,661 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-20T23:10:26,681 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-20T23:10:26,887 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-20T23:10:26,898 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-20T23:10:26,902 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-20T23:10:26,909 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2023-08-20T23:10:26,913 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,915 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,920 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,925 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,930 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,934 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,938 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,941 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,949 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,954 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2023-08-20T23:10:26,968 running build_clib 2023-08-20T23:10:26,987 creating build/temp.linux-armv7l-cpython-37 2023-08-20T23:10:26,989 generating "divsufsort.h" for divsufsort library 2023-08-20T23:10:26,989 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2023-08-20T23:10:26,993 generating "esl_config.h" for easel library 2023-08-20T23:10:26,997 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -c build/temp.linux-armv7l-cpython-37/have_NEON.c -o build/temp.linux-armv7l-cpython-37/have_NEON.o 2023-08-20T23:10:27,740 arm-linux-gnueabihf-gcc -pthread -mfpu=neon build/temp.linux-armv7l-cpython-37/have_NEON.o -o build/temp.linux-armv7l-cpython-37/have_NEON 2023-08-20T23:10:28,399 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdio_h.c -o build/temp.linux-armv7l-cpython-37/have_stdio_h.o 2023-08-20T23:10:28,608 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-37/have_stdlib_h.o 2023-08-20T23:10:28,838 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_string_h.c -o build/temp.linux-armv7l-cpython-37/have_string_h.o 2023-08-20T23:10:29,021 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2023-08-20T23:10:29,207 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2023-08-20T23:10:29,384 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strings_h.c -o build/temp.linux-armv7l-cpython-37/have_strings_h.o 2023-08-20T23:10:29,558 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_stat_h.o 2023-08-20T23:10:29,738 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2023-08-20T23:10:29,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2023-08-20T23:10:30,125 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2023-08-20T23:10:30,304 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2023-08-20T23:10:30,550 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2023-08-20T23:10:30,803 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2023-08-20T23:10:30,993 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -Wno-all 2023-08-20T23:10:31,241 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.bin 2023-08-20T23:10:31,860 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2023-08-20T23:10:32,122 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2023-08-20T23:10:32,747 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2023-08-20T23:10:32,970 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2023-08-20T23:10:33,600 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -Wno-all 2023-08-20T23:10:33,837 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.bin 2023-08-20T23:10:34,453 /usr/bin/ld: /tmp/ccTNmNeb.ltrans0.ltrans.o: in function `main': 2023-08-20T23:10:34,454 :(.text.startup+0xc): undefined reference to `_mm_malloc' 2023-08-20T23:10:34,455 collect2: error: ld returned 1 exit status 2023-08-20T23:10:34,466 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2023-08-20T23:10:34,698 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2023-08-20T23:10:35,330 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -Wno-all 2023-08-20T23:10:35,585 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.bin 2023-08-20T23:10:36,217 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2023-08-20T23:10:36,414 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2023-08-20T23:10:37,036 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2023-08-20T23:10:37,247 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2023-08-20T23:10:37,878 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2023-08-20T23:10:38,102 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2023-08-20T23:10:38,729 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2023-08-20T23:10:38,979 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2023-08-20T23:10:39,603 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2023-08-20T23:10:39,810 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2023-08-20T23:10:40,435 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fseeko.c -o build/temp.linux-armv7l-cpython-37/have_fseeko.o -Wno-all 2023-08-20T23:10:40,668 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fseeko.o -o build/temp.linux-armv7l-cpython-37/have_fseeko.bin 2023-08-20T23:10:41,296 generating "p7_config.h" for hmmer library 2023-08-20T23:10:41,299 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -c build/temp.linux-armv7l-cpython-37/have_NEON.c -o build/temp.linux-armv7l-cpython-37/have_NEON.o 2023-08-20T23:10:42,032 arm-linux-gnueabihf-gcc -pthread -mfpu=neon build/temp.linux-armv7l-cpython-37/have_NEON.o -o build/temp.linux-armv7l-cpython-37/have_NEON 2023-08-20T23:10:42,680 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2023-08-20T23:10:42,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2023-08-20T23:10:43,042 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2023-08-20T23:10:43,223 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2023-08-20T23:10:43,421 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2023-08-20T23:10:43,618 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2023-08-20T23:10:43,856 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2023-08-20T23:10:44,104 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2023-08-20T23:10:44,287 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_mkstemp.c -o build/temp.linux-armv7l-cpython-37/have_mkstemp.o -Wno-all 2023-08-20T23:10:44,531 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_mkstemp.o -o build/temp.linux-armv7l-cpython-37/have_mkstemp.bin 2023-08-20T23:10:45,155 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2023-08-20T23:10:45,387 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2023-08-20T23:10:46,022 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_putenv.c -o build/temp.linux-armv7l-cpython-37/have_putenv.o -Wno-all 2023-08-20T23:10:46,268 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_putenv.o -o build/temp.linux-armv7l-cpython-37/have_putenv.bin 2023-08-20T23:10:46,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2023-08-20T23:10:47,102 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2023-08-20T23:10:47,721 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2023-08-20T23:10:47,927 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2023-08-20T23:10:48,558 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2023-08-20T23:10:48,762 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2023-08-20T23:10:49,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2023-08-20T23:10:49,614 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2023-08-20T23:10:50,238 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2023-08-20T23:10:50,488 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2023-08-20T23:10:51,114 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2023-08-20T23:10:51,336 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2023-08-20T23:10:51,970 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getcwd.c -o build/temp.linux-armv7l-cpython-37/have_getcwd.o -Wno-all 2023-08-20T23:10:52,194 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getcwd.o -o build/temp.linux-armv7l-cpython-37/have_getcwd.bin 2023-08-20T23:10:52,816 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_chmod.c -o build/temp.linux-armv7l-cpython-37/have_chmod.o -Wno-all 2023-08-20T23:10:53,030 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_chmod.o -o build/temp.linux-armv7l-cpython-37/have_chmod.bin 2023-08-20T23:10:53,658 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stat.c -o build/temp.linux-armv7l-cpython-37/have_stat.o -Wno-all 2023-08-20T23:10:53,881 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_stat.o -o build/temp.linux-armv7l-cpython-37/have_stat.bin 2023-08-20T23:10:54,533 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fstat.c -o build/temp.linux-armv7l-cpython-37/have_fstat.o -Wno-all 2023-08-20T23:10:54,758 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fstat.o -o build/temp.linux-armv7l-cpython-37/have_fstat.bin 2023-08-20T23:10:55,395 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2023-08-20T23:10:55,653 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2023-08-20T23:10:56,281 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2023-08-20T23:10:56,297 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2023-08-20T23:10:56,298 creating build/temp.linux-armv7l-cpython-37/vendor 2023-08-20T23:10:56,299 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2023-08-20T23:10:56,301 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2023-08-20T23:10:56,303 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2023-08-20T23:11:05,323 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2023-08-20T23:11:05,382 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_mem.c, vendor/easel/esl_msafile.c, vendor/easel/esl_subcmd.c, vendor/easel/interface_gsl.c, vendor/easel/esl_heap.c, vendor/easel/esl_varint.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_alloc.c, vendor/easel/esl_hmm.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_tree.c, vendor/easel/esl_arr2.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_mpi.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_gencode.c, vendor/easel/interface_lapack.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_histogram.c, vendor/easel/esl_gamma.c, vendor/easel/esl_wuss.c, vendor/easel/esl_buffer.c, vendor/easel/esl_distance.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_gev.c, vendor/easel/esl_arr3.c, vendor/easel/esl_ssi.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_red_black.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_composition.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_stack.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_cpu.c, vendor/easel/esl_normal.c, vendor/easel/esl_huffman.c, vendor/easel/esl_lognormal.c, vendor/easel/esl_msa.c, vendor/easel/esl_exponential.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_graph.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_neon.c, vendor/easel/esl_avx.c, vendor/easel/esl_cluster.c, vendor/easel/esl_random.c, vendor/easel/esl_recorder.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_sqio_ascii.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_paml.c, vendor/easel/easel.c, vendor/easel/esl_avx512.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_stats.c, vendor/easel/esl_threads.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_sse.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_weibull.c, vendor/easel/esl_iset.c, vendor/easel/esl_rand64.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_vmx.c, vendor/easel/esl_regexp.c, vendor/easel/esl_sq.c, vendor/easel/esl_swat.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_json.c, vendor/easel/esl_getopts.c, vendor/easel/esl_sqio.c 2023-08-20T23:11:05,383 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2023-08-20T23:11:05,415 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2023-08-20T23:11:05,417 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2023-08-20T23:11:05,418 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2023-08-20T23:11:05,419 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2023-08-20T23:11:05,420 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-08-20T23:11:05,420 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-08-20T23:11:05,421 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-08-20T23:11:05,421 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2023-08-20T23:11:05,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2023-08-20T23:11:05,424 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2023-08-20T23:11:05,425 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2023-08-20T23:11:05,463 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2023-08-20T23:11:07,902 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2023-08-20T23:11:07,904 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2023-08-20T23:11:08,367 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2023-08-20T23:11:08,369 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2023-08-20T23:11:08,563 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2023-08-20T23:11:08,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2023-08-20T23:11:09,436 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2023-08-20T23:11:09,438 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2023-08-20T23:11:10,441 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2023-08-20T23:11:10,443 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2023-08-20T23:11:11,018 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2023-08-20T23:11:11,020 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2023-08-20T23:11:11,209 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2023-08-20T23:11:11,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2023-08-20T23:11:11,708 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2023-08-20T23:11:11,710 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2023-08-20T23:11:12,211 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2023-08-20T23:11:12,213 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2023-08-20T23:11:12,232 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2023-08-20T23:11:12,234 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2023-08-20T23:11:12,307 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2023-08-20T23:11:12,309 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2023-08-20T23:11:12,389 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2023-08-20T23:11:12,391 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2023-08-20T23:11:12,409 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2023-08-20T23:11:12,411 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2023-08-20T23:11:12,885 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2023-08-20T23:11:12,887 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2023-08-20T23:11:13,267 In file included from vendor/easel/esl_hmm.c:9: 2023-08-20T23:11:13,268 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2023-08-20T23:11:13,269 vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:13,270 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-20T23:11:13,271 ^ 2023-08-20T23:11:13,272 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-08-20T23:11:13,272 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-08-20T23:11:13,273 ^~~~~~~ 2023-08-20T23:11:13,274 vendor/easel/easel.h:431:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:11:13,275 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-20T23:11:13,275 ^~~ 2023-08-20T23:11:13,276 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2023-08-20T23:11:13,276 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2023-08-20T23:11:13,277 ^~~~~~~ 2023-08-20T23:11:13,295 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2023-08-20T23:11:13,296 vendor/easel/esl_varint.c:471:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:11:13,297 if (grp & cmask) { status = eslEOD; goto ERROR; } 2023-08-20T23:11:13,297 ~~~~^~~~~~~ 2023-08-20T23:11:13,510 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2023-08-20T23:11:13,512 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2023-08-20T23:11:13,604 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2023-08-20T23:11:13,606 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2023-08-20T23:11:14,225 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2023-08-20T23:11:14,226 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:11:14,227 return status; 2023-08-20T23:11:14,227 ^~~~~~ 2023-08-20T23:11:14,382 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2023-08-20T23:11:14,384 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2023-08-20T23:11:15,306 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2023-08-20T23:11:15,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2023-08-20T23:11:15,494 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2023-08-20T23:11:15,496 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2023-08-20T23:11:15,768 In file included from vendor/easel/esl_msafile2.c:26: 2023-08-20T23:11:15,769 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2023-08-20T23:11:15,769 vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:15,770 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-20T23:11:15,770 ^ 2023-08-20T23:11:15,771 vendor/easel/esl_msafile2.c:632:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-20T23:11:15,771 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-08-20T23:11:15,772 ^~~~~~~ 2023-08-20T23:11:15,772 vendor/easel/easel.h:432:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:11:15,773 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-20T23:11:15,773 ^~~ 2023-08-20T23:11:15,774 vendor/easel/esl_msafile2.c:632:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-20T23:11:15,774 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2023-08-20T23:11:15,775 ^~~~~~~ 2023-08-20T23:11:15,775 vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:15,776 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-20T23:11:15,776 ^ 2023-08-20T23:11:15,777 vendor/easel/esl_msafile2.c:641:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-20T23:11:15,777 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-08-20T23:11:15,777 ^~~~~~~ 2023-08-20T23:11:15,778 vendor/easel/easel.h:432:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:11:15,778 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-20T23:11:15,779 ^~~ 2023-08-20T23:11:15,780 vendor/easel/esl_msafile2.c:641:43: note: in expansion of macro ‘ESL_MAX’ 2023-08-20T23:11:15,781 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2023-08-20T23:11:15,781 ^~~~~~~ 2023-08-20T23:11:15,914 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2023-08-20T23:11:15,914 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:15,915 if (rank > h->n) 2023-08-20T23:11:15,916 ^ 2023-08-20T23:11:15,966 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2023-08-20T23:11:15,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2023-08-20T23:11:18,530 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2023-08-20T23:11:18,532 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2023-08-20T23:11:18,979 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2023-08-20T23:11:18,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2023-08-20T23:11:19,031 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2023-08-20T23:11:19,033 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2023-08-20T23:11:19,390 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2023-08-20T23:11:19,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2023-08-20T23:11:19,845 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2023-08-20T23:11:19,847 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2023-08-20T23:11:20,715 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2023-08-20T23:11:20,717 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2023-08-20T23:11:21,316 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2023-08-20T23:11:21,318 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2023-08-20T23:11:21,625 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2023-08-20T23:11:21,628 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2023-08-20T23:11:21,711 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2023-08-20T23:11:21,713 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2023-08-20T23:11:21,913 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2023-08-20T23:11:21,915 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2023-08-20T23:11:22,037 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2023-08-20T23:11:22,038 static double stopwatch_getRealTime(void); 2023-08-20T23:11:22,038 ^~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:11:22,258 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2023-08-20T23:11:22,259 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,260 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2023-08-20T23:11:22,260 ^~ 2023-08-20T23:11:22,282 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2023-08-20T23:11:22,283 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,284 if ((n+1) > ns->flen) ns->flen = n+1; 2023-08-20T23:11:22,284 ^ 2023-08-20T23:11:22,291 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2023-08-20T23:11:22,292 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,292 if (n > ns->plen) ns->plen = n; 2023-08-20T23:11:22,293 ^ 2023-08-20T23:11:22,295 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,296 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2023-08-20T23:11:22,297 ^ 2023-08-20T23:11:22,298 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2023-08-20T23:11:22,298 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,299 if (n > ns->slen) ns->slen = n; 2023-08-20T23:11:22,299 ^ 2023-08-20T23:11:22,302 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,302 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2023-08-20T23:11:22,303 ^ 2023-08-20T23:11:22,315 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2023-08-20T23:11:22,316 vendor/easel/esl_ssi.c:1143:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,316 for (i = 0; i < ns->nprimary; i++) 2023-08-20T23:11:22,317 ^ 2023-08-20T23:11:22,318 vendor/easel/esl_ssi.c:1161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,319 for (i = 0; i < ns->nprimary; i++) 2023-08-20T23:11:22,319 ^ 2023-08-20T23:11:22,321 vendor/easel/esl_ssi.c:1181:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,322 for (i = 0; i < ns->nsecondary; i++) 2023-08-20T23:11:22,322 ^ 2023-08-20T23:11:22,324 vendor/easel/esl_ssi.c:1198:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,324 for (i = 0; i < ns->nsecondary; i++) 2023-08-20T23:11:22,325 ^ 2023-08-20T23:11:22,332 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2023-08-20T23:11:22,333 vendor/easel/esl_ssi.c:1247:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,334 for (i = 0; i < ns->nprimary; i++) 2023-08-20T23:11:22,334 ^ 2023-08-20T23:11:22,335 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,335 for (i = 0; i < ns->nsecondary; i++) 2023-08-20T23:11:22,336 ^ 2023-08-20T23:11:22,346 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2023-08-20T23:11:22,347 vendor/easel/esl_ssi.c:1345:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,348 for (i = 0; i < ns->nprimary; i++) { 2023-08-20T23:11:22,348 ^ 2023-08-20T23:11:22,349 vendor/easel/esl_ssi.c:1364:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,350 for (i = 0; i < ns->nsecondary; i++) 2023-08-20T23:11:22,350 ^ 2023-08-20T23:11:22,351 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,352 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2023-08-20T23:11:22,353 ^ 2023-08-20T23:11:22,354 vendor/easel/esl_ssi.c:1371:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,355 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2023-08-20T23:11:22,355 ^ 2023-08-20T23:11:22,356 vendor/easel/esl_ssi.c:1372:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:22,357 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2023-08-20T23:11:22,358 ^ 2023-08-20T23:11:22,464 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2023-08-20T23:11:22,466 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2023-08-20T23:11:22,785 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2023-08-20T23:11:22,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2023-08-20T23:11:22,929 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2023-08-20T23:11:22,930 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2023-08-20T23:11:23,480 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2023-08-20T23:11:23,483 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2023-08-20T23:11:25,225 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_lognormal.o from vendor/easel/esl_lognormal.c 2023-08-20T23:11:25,228 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_lognormal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_lognormal.o 2023-08-20T23:11:26,008 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2023-08-20T23:11:26,010 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2023-08-20T23:11:26,372 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2023-08-20T23:11:26,374 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2023-08-20T23:11:27,077 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2023-08-20T23:11:27,079 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2023-08-20T23:11:27,955 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2023-08-20T23:11:27,957 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2023-08-20T23:11:28,370 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2023-08-20T23:11:28,372 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2023-08-20T23:11:28,587 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2023-08-20T23:11:28,589 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2023-08-20T23:11:28,996 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2023-08-20T23:11:28,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2023-08-20T23:11:29,191 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2023-08-20T23:11:29,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2023-08-20T23:11:30,042 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2023-08-20T23:11:30,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2023-08-20T23:11:30,546 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2023-08-20T23:11:30,548 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2023-08-20T23:11:31,813 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2023-08-20T23:11:31,815 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2023-08-20T23:11:32,155 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2023-08-20T23:11:32,157 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:32,158 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2023-08-20T23:11:32,159 ^~ 2023-08-20T23:11:32,274 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2023-08-20T23:11:32,274 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:11:32,275 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2023-08-20T23:11:32,276 ^ 2023-08-20T23:11:32,276 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2023-08-20T23:11:32,277 char *p; 2023-08-20T23:11:32,277 ^ 2023-08-20T23:11:34,626 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2023-08-20T23:11:34,628 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2023-08-20T23:11:35,612 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2023-08-20T23:11:35,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2023-08-20T23:11:35,670 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2023-08-20T23:11:35,672 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2023-08-20T23:11:35,950 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2023-08-20T23:11:35,952 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2023-08-20T23:11:36,286 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2023-08-20T23:11:36,288 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2023-08-20T23:11:36,342 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2023-08-20T23:11:36,343 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,343 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2023-08-20T23:11:36,344 ^~ 2023-08-20T23:11:36,345 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,345 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-08-20T23:11:36,346 ^~ 2023-08-20T23:11:36,347 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,347 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2023-08-20T23:11:36,348 ^~ 2023-08-20T23:11:36,369 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2023-08-20T23:11:36,370 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,370 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-20T23:11:36,371 ^~ 2023-08-20T23:11:36,372 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2023-08-20T23:11:36,373 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,374 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-20T23:11:36,374 ^~ 2023-08-20T23:11:36,375 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2023-08-20T23:11:36,376 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,376 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-20T23:11:36,377 ^~ 2023-08-20T23:11:36,393 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2023-08-20T23:11:36,394 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,394 if (status != eslOK || nres != W) { 2023-08-20T23:11:36,394 ^~ 2023-08-20T23:11:36,395 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,396 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-20T23:11:36,396 ^~ 2023-08-20T23:11:36,406 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2023-08-20T23:11:36,406 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2023-08-20T23:11:36,436 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2023-08-20T23:11:36,437 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,438 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2023-08-20T23:11:36,438 ^ 2023-08-20T23:11:36,446 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,447 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2023-08-20T23:11:36,447 ^~ 2023-08-20T23:11:36,451 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2023-08-20T23:11:36,452 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,453 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2023-08-20T23:11:36,453 ^ 2023-08-20T23:11:36,455 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,456 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-20T23:11:36,457 ^~ 2023-08-20T23:11:36,458 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,459 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-20T23:11:36,459 ^ 2023-08-20T23:11:36,461 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,462 if (ncbi->index_start == -1 || inx < start || inx > end) { 2023-08-20T23:11:36,463 ^ 2023-08-20T23:11:36,464 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,465 if (inx < volume->start_seq || inx > volume->end_seq) { 2023-08-20T23:11:36,465 ^ 2023-08-20T23:11:36,467 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,468 if (inx < volume->start_seq || inx > volume->end_seq) { 2023-08-20T23:11:36,468 ^ 2023-08-20T23:11:36,472 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,472 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2023-08-20T23:11:36,473 ^ 2023-08-20T23:11:36,473 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,474 if (inx < volume->end_seq) break; 2023-08-20T23:11:36,474 ^ 2023-08-20T23:11:36,486 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,486 if (cnt >= ncbi->volumes) return eslFAIL; 2023-08-20T23:11:36,487 ^~ 2023-08-20T23:11:36,487 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,488 if (ncbi->index_start == -1 || inx > end) { 2023-08-20T23:11:36,488 ^~ 2023-08-20T23:11:36,489 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,489 if (ncbi->index_start == -1 || inx > end) { 2023-08-20T23:11:36,490 ^ 2023-08-20T23:11:36,490 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,491 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-20T23:11:36,491 ^~ 2023-08-20T23:11:36,491 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,492 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-20T23:11:36,492 ^~ 2023-08-20T23:11:36,493 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,493 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2023-08-20T23:11:36,494 ^~ 2023-08-20T23:11:36,494 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2023-08-20T23:11:36,495 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,495 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-20T23:11:36,496 ^~ 2023-08-20T23:11:36,499 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,499 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-20T23:11:36,500 ^~ 2023-08-20T23:11:36,503 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,503 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-20T23:11:36,504 ^~ 2023-08-20T23:11:36,506 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2023-08-20T23:11:36,512 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,513 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-20T23:11:36,513 ^~ 2023-08-20T23:11:36,513 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,514 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-20T23:11:36,514 ^~ 2023-08-20T23:11:36,522 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,522 if (ncbi->seq_apos - sq->doff < size) { 2023-08-20T23:11:36,523 ^ 2023-08-20T23:11:36,529 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2023-08-20T23:11:36,530 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,531 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-20T23:11:36,531 ^~ 2023-08-20T23:11:36,537 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,537 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2023-08-20T23:11:36,538 ^~ 2023-08-20T23:11:36,550 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2023-08-20T23:11:36,551 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,552 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2023-08-20T23:11:36,552 ^~ 2023-08-20T23:11:36,560 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,561 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2023-08-20T23:11:36,561 ^~ 2023-08-20T23:11:36,576 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2023-08-20T23:11:36,577 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,578 for (x = 0; x < strlen(ncbisym); ++x) { 2023-08-20T23:11:36,579 ^ 2023-08-20T23:11:36,580 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,581 for (y = 0; y < strlen(abc->sym); ++y) { 2023-08-20T23:11:36,581 ^ 2023-08-20T23:11:36,583 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,583 if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-08-20T23:11:36,584 ^~ 2023-08-20T23:11:36,589 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2023-08-20T23:11:36,590 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,590 for (x = 0; x < strlen(ncbisym); ++x) { 2023-08-20T23:11:36,591 ^ 2023-08-20T23:11:36,592 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,593 for (y = 0; y < strlen(abc->sym); ++y) { 2023-08-20T23:11:36,593 ^ 2023-08-20T23:11:36,595 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:36,596 if (y >= strlen(abc->sym)) return eslEFORMAT; 2023-08-20T23:11:36,596 ^~ 2023-08-20T23:11:36,605 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2023-08-20T23:11:36,607 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:36,607 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2023-08-20T23:11:36,608 ^~ 2023-08-20T23:11:37,370 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2023-08-20T23:11:37,372 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2023-08-20T23:11:37,474 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2023-08-20T23:11:37,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2023-08-20T23:11:37,644 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2023-08-20T23:11:37,646 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2023-08-20T23:11:37,954 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2023-08-20T23:11:37,954 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:37,955 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2023-08-20T23:11:37,956 ^ 2023-08-20T23:11:38,217 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2023-08-20T23:11:38,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2023-08-20T23:11:38,403 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2023-08-20T23:11:38,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2023-08-20T23:11:38,598 vendor/easel/esl_random.c: In function ‘esl_rnd_Roll’: 2023-08-20T23:11:38,599 vendor/easel/esl_random.c:319:54: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:38,599 do { u = esl_random_uint32(r) / factor; } while (u >= n); 2023-08-20T23:11:38,600 ^~ 2023-08-20T23:11:38,600 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2023-08-20T23:11:38,602 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2023-08-20T23:11:38,616 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2023-08-20T23:11:38,616 vendor/easel/esl_random.c:655:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2023-08-20T23:11:38,617 for (i = 0; i < a; i++) 2023-08-20T23:11:38,617 ^ 2023-08-20T23:11:39,307 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2023-08-20T23:11:39,309 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2023-08-20T23:11:40,126 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2023-08-20T23:11:40,128 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2023-08-20T23:11:40,236 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_iset.o from vendor/easel/esl_iset.c 2023-08-20T23:11:40,238 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_iset.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_iset.o 2023-08-20T23:11:40,577 vendor/easel/esl_iset.c: In function ‘esl_iset_monoCobalt’: 2023-08-20T23:11:40,579 vendor/easel/esl_iset.c:127:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:40,579 for (v = 0; v < n; v++) a[v] = n-v-1; // initialize by putting all vertices into array a 2023-08-20T23:11:40,580 ^ 2023-08-20T23:11:40,581 vendor/easel/esl_iset.c:131:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:40,581 for (j = 0; j < n; j++) 2023-08-20T23:11:40,582 ^ 2023-08-20T23:11:40,582 vendor/easel/esl_iset.c:135:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:40,583 for (i = n; i < n+nb; i++) 2023-08-20T23:11:40,583 ^ 2023-08-20T23:11:40,584 vendor/easel/esl_iset.c: In function ‘esl_iset_biCobalt’: 2023-08-20T23:11:40,585 vendor/easel/esl_iset.c:209:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:40,585 for (v = 0; v < n; v++) a[v] = n-v-1; // initialize by putting all vertices into an array 2023-08-20T23:11:40,586 ^ 2023-08-20T23:11:40,586 vendor/easel/esl_iset.c:213:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:40,587 for (j = 0; j abc_r->type) 2023-08-20T23:11:43,649 ^~ 2023-08-20T23:11:43,670 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2023-08-20T23:11:43,670 vendor/easel/esl_dsqdata.c:617:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:11:43,671 if (sq->n > max_seqlen) max_seqlen = sq->n; 2023-08-20T23:11:43,672 ^ 2023-08-20T23:11:43,672 vendor/easel/esl_dsqdata.c:618:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:43,673 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2023-08-20T23:11:43,673 ^ 2023-08-20T23:11:43,674 vendor/easel/esl_dsqdata.c:619:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:43,674 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2023-08-20T23:11:43,675 ^ 2023-08-20T23:11:43,676 vendor/easel/esl_dsqdata.c:620:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:43,676 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2023-08-20T23:11:43,677 ^ 2023-08-20T23:11:43,681 vendor/easel/esl_dsqdata.c:677:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:43,682 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2023-08-20T23:11:43,682 ^~ 2023-08-20T23:11:43,683 vendor/easel/esl_dsqdata.c:683:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:43,684 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2023-08-20T23:11:43,684 ^~ 2023-08-20T23:11:43,685 vendor/easel/esl_dsqdata.c:688:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:43,686 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2023-08-20T23:11:43,686 ^~ 2023-08-20T23:11:43,687 vendor/easel/esl_dsqdata.c:693:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:43,687 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2023-08-20T23:11:43,688 ^~ 2023-08-20T23:11:43,761 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2023-08-20T23:11:43,762 vendor/easel/esl_dsqdata.c:1130:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-08-20T23:11:43,763 } 2023-08-20T23:11:43,763 ^ 2023-08-20T23:11:43,778 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2023-08-20T23:11:43,779 vendor/easel/esl_dsqdata.c:1053:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-08-20T23:11:43,780 } 2023-08-20T23:11:43,780 ^ 2023-08-20T23:11:44,141 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2023-08-20T23:11:44,143 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2023-08-20T23:11:44,368 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2023-08-20T23:11:44,370 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2023-08-20T23:11:44,589 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2023-08-20T23:11:44,590 vendor/easel/esl_getopts.c:1391:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:44,590 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2023-08-20T23:11:44,591 ^~ 2023-08-20T23:11:45,861 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2023-08-20T23:11:45,862 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2023-08-20T23:11:46,315 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2023-08-20T23:11:46,316 vendor/easel/esl_sq.c:1638:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-08-20T23:11:46,317 for (pos = 0; pos < sq->n; pos++) 2023-08-20T23:11:46,317 ^ 2023-08-20T23:11:46,318 vendor/easel/esl_sq.c:1647:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2023-08-20T23:11:46,318 for (pos = 1; pos <= sq->n; pos++) 2023-08-20T23:11:46,319 ^~ 2023-08-20T23:11:47,306 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2023-08-20T23:11:47,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2023-08-20T23:11:48,016 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2023-08-20T23:11:48,018 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2023-08-20T23:11:48,158 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2023-08-20T23:11:48,159 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:11:48,159 if (opt_fx) *opt_fx = fx; 2023-08-20T23:11:48,160 ~~~~~~~~^~~~ 2023-08-20T23:11:48,160 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:11:48,161 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2023-08-20T23:11:48,161 ~~^~~ 2023-08-20T23:11:48,161 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2023-08-20T23:11:48,162 double ax,bx,cx; 2023-08-20T23:11:48,162 ^~ 2023-08-20T23:11:48,163 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:11:48,163 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2023-08-20T23:11:48,164 ~^~~~~~~~~~~~~ 2023-08-20T23:11:48,164 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2023-08-20T23:11:48,165 double ax,bx,cx; 2023-08-20T23:11:48,165 ^~ 2023-08-20T23:11:48,424 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2023-08-20T23:11:48,426 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2023-08-20T23:11:48,750 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2023-08-20T23:11:48,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2023-08-20T23:11:49,246 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2023-08-20T23:11:49,247 vendor/easel/easel.c:1942:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:11:49,248 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2023-08-20T23:11:49,248 ^~~~~~~~~~~~~~~~ 2023-08-20T23:11:49,305 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2023-08-20T23:11:49,307 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2023-08-20T23:11:50,865 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2023-08-20T23:11:50,867 creating build/temp.linux-armv7l-cpython-37/build 2023-08-20T23:11:50,868 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2023-08-20T23:11:50,871 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2023-08-20T23:11:50,943 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2023-08-20T23:11:50,944 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2023-08-20T23:11:51,410 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2023-08-20T23:11:51,411 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1671:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:11:51,412 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2023-08-20T23:11:51,412 ^~ 2023-08-20T23:11:52,047 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2023-08-20T23:11:52,049 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2023-08-20T23:11:52,211 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2023-08-20T23:11:52,213 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2023-08-20T23:11:52,494 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2023-08-20T23:11:52,496 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2023-08-20T23:11:52,833 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2023-08-20T23:11:52,833 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2023-08-20T23:11:52,854 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2023-08-20T23:11:52,855 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-08-20T23:11:52,856 for (h = 0; h < kh->hashsize; h++) 2023-08-20T23:11:52,857 ^ 2023-08-20T23:11:52,858 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2023-08-20T23:11:52,858 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:52,859 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-20T23:11:52,860 ^ 2023-08-20T23:11:52,861 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2023-08-20T23:11:52,862 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-08-20T23:11:52,863 for (h = 0; h < kh->hashsize; h++) 2023-08-20T23:11:52,863 ^ 2023-08-20T23:11:52,866 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2023-08-20T23:11:52,867 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:52,868 if (kh->nkeys > 3*kh->hashsize) 2023-08-20T23:11:52,869 ^ 2023-08-20T23:11:52,872 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2023-08-20T23:11:52,873 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:52,875 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-20T23:11:52,877 ^ 2023-08-20T23:11:52,878 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2023-08-20T23:11:52,884 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:11:52,885 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2023-08-20T23:11:52,886 ^ 2023-08-20T23:11:54,860 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2023-08-20T23:11:54,861 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2023-08-20T23:11:58,506 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_lognormal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_iset.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2023-08-20T23:11:59,068 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmfile.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c 2023-08-20T23:11:59,069 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2023-08-20T23:11:59,101 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2023-08-20T23:11:59,102 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/evalues.o from vendor/hmmer/src/evalues.c 2023-08-20T23:11:59,104 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2023-08-20T23:11:59,104 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2023-08-20T23:11:59,105 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback_banded.o from vendor/hmmer/src/generic_fwdback_banded.c 2023-08-20T23:11:59,109 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_viterbi.o from vendor/hmmer/src/generic_viterbi.c 2023-08-20T23:11:59,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_viterbi.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_viterbi.o 2023-08-20T23:11:59,111 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/evalues.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/evalues.o 2023-08-20T23:11:59,120 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2023-08-20T23:11:59,148 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_fwdback_banded.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback_banded.o 2023-08-20T23:12:00,705 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_null2.o from vendor/hmmer/src/generic_null2.c 2023-08-20T23:12:00,708 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_null2.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_null2.o 2023-08-20T23:12:01,274 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2023-08-20T23:12:01,276 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2023-08-20T23:12:01,433 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/eweight.o from vendor/hmmer/src/eweight.c 2023-08-20T23:12:01,435 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/eweight.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/eweight.o 2023-08-20T23:12:01,696 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/cachedb.o from vendor/hmmer/src/cachedb.c 2023-08-20T23:12:01,699 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/cachedb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/cachedb.o 2023-08-20T23:12:02,430 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2023-08-20T23:12:02,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2023-08-20T23:12:02,825 vendor/hmmer/src/cachedb.c: In function ‘p7_seqcache_Open’: 2023-08-20T23:12:02,826 vendor/hmmer/src/cachedb.c:95:14: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-08-20T23:12:02,827 if (db_cnt > (sizeof(db_inx)/sizeof(db_inx[0]))) return eslEFORMAT; 2023-08-20T23:12:02,827 ^ 2023-08-20T23:12:02,834 vendor/hmmer/src/cachedb.c:157:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:02,835 if (inx >= seq_cnt) { printf("inx: %d\n", inx); return eslEFORMAT; } 2023-08-20T23:12:02,836 ^~ 2023-08-20T23:12:02,836 vendor/hmmer/src/cachedb.c:158:19: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:02,837 if (sq->n + 1 > res_size) { printf("inx: %d size %d %d\n", inx, (int)sq->n + 1, (int)res_size); return eslEFORMAT; } 2023-08-20T23:12:02,837 ^ 2023-08-20T23:12:02,838 vendor/hmmer/src/cachedb.c:179:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:02,838 if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db %d %s\n", inx, db_key, sq->desc); return eslEFORMAT; } 2023-08-20T23:12:02,839 ^~ 2023-08-20T23:12:02,839 vendor/hmmer/src/cachedb.c:212:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:02,840 if (inx != seq_cnt) { printf("inx:: %d %" PRIu64 "\n", inx, seq_cnt); return eslEFORMAT; } 2023-08-20T23:12:02,840 ^~ 2023-08-20T23:12:02,841 vendor/hmmer/src/cachedb.c:222:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:02,841 for (i = 0 ; i < seq_cnt; ++i) { 2023-08-20T23:12:02,842 ^ 2023-08-20T23:12:02,842 vendor/hmmer/src/cachedb.c:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:02,843 for (i = 0 ; i < seq_cnt; ++i) { 2023-08-20T23:12:02,843 ^ 2023-08-20T23:12:02,844 vendor/hmmer/src/cachedb.c:236:25: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:02,844 if (db_inx[inx] >= db->count) { printf("sort:: %d %d\n", db_inx[inx], db->count); return eslEFORMAT; } 2023-08-20T23:12:02,845 ^~ 2023-08-20T23:12:02,845 vendor/hmmer/src/cachedb.c:246:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:02,856 for (i = 0; i < cache->db_cnt; ++i) { 2023-08-20T23:12:02,856 ^ 2023-08-20T23:12:02,857 vendor/hmmer/src/cachedb.c: In function ‘p7_seqcache_Close’: 2023-08-20T23:12:02,858 vendor/hmmer/src/cachedb.c:284:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:02,858 for (i = 0; i < cache->db_cnt; ++i) { 2023-08-20T23:12:02,859 ^ 2023-08-20T23:12:02,995 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_decoding.o from vendor/hmmer/src/generic_decoding.c 2023-08-20T23:12:02,997 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_decoding.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_decoding.o 2023-08-20T23:12:03,354 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/h2_io.o from vendor/hmmer/src/h2_io.c 2023-08-20T23:12:03,355 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/h2_io.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/h2_io.o 2023-08-20T23:12:04,202 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/cachedb_shard.o from vendor/hmmer/src/cachedb_shard.c 2023-08-20T23:12:04,204 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/cachedb_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/cachedb_shard.o 2023-08-20T23:12:04,243 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_optacc.o from vendor/hmmer/src/generic_optacc.c 2023-08-20T23:12:04,246 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_optacc.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_optacc.o 2023-08-20T23:12:04,634 vendor/hmmer/src/h2_io.c: In function ‘h2_multiline’: 2023-08-20T23:12:04,635 vendor/hmmer/src/h2_io.c:213:40: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:04,636 if (fwrite(sptr, sizeof(char), n, fp) != n) ESL_EXCEPTION_SYS(eslEWRITE, "h2 profile write failed"); /* using fwrite lets us write fixed # of chars */ 2023-08-20T23:12:04,637 ^~ 2023-08-20T23:12:04,749 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2023-08-20T23:12:04,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2023-08-20T23:12:05,357 vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Open_master’: 2023-08-20T23:12:05,357 vendor/hmmer/src/cachedb_shard.c:117:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,358 for (i = 0; i < db_cnt; ++i) { 2023-08-20T23:12:05,358 ^ 2023-08-20T23:12:05,361 vendor/hmmer/src/cachedb_shard.c:159:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,362 for (i = 0; i < db_cnt; ++i) db_inx[i] = 0; 2023-08-20T23:12:05,363 ^ 2023-08-20T23:12:05,363 vendor/hmmer/src/cachedb_shard.c:167:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,364 if (inx >= seq_cnt) { printf("inx: %d\n", inx); return eslEFORMAT; } 2023-08-20T23:12:05,364 ^~ 2023-08-20T23:12:05,365 vendor/hmmer/src/cachedb_shard.c:191:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:05,365 if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db_cnt %d db %d %s\n", inx, db_cnt, db_key, sq->desc); return eslEFORMAT; } 2023-08-20T23:12:05,366 ^~ 2023-08-20T23:12:05,367 vendor/hmmer/src/cachedb_shard.c:225:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,367 if (inx != seq_cnt) { printf("inx:: %d %" PRIu64 "\n", inx, seq_cnt); return eslEFORMAT; } 2023-08-20T23:12:05,368 ^~ 2023-08-20T23:12:05,368 vendor/hmmer/src/cachedb_shard.c:235:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,369 for (i = 0 ; i < seq_cnt; ++i) { 2023-08-20T23:12:05,370 ^ 2023-08-20T23:12:05,370 vendor/hmmer/src/cachedb_shard.c:243:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,371 for (i = 0 ; i < seq_cnt; ++i) { 2023-08-20T23:12:05,371 ^ 2023-08-20T23:12:05,372 vendor/hmmer/src/cachedb_shard.c:259:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,372 for (i = 0; i < cache->db_cnt; ++i) { 2023-08-20T23:12:05,373 ^ 2023-08-20T23:12:05,373 vendor/hmmer/src/cachedb_shard.c:282:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,374 for (i = 0; i < db_cnt; ++i) { 2023-08-20T23:12:05,375 ^ 2023-08-20T23:12:05,375 vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Close_master’: 2023-08-20T23:12:05,376 vendor/hmmer/src/cachedb_shard.c:297:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,376 for (i = 0; i < cache->db_cnt; ++i) { 2023-08-20T23:12:05,377 ^ 2023-08-20T23:12:05,378 vendor/hmmer/src/cachedb_shard.c: In function ‘p7_seqcache_Open_shard’: 2023-08-20T23:12:05,378 vendor/hmmer/src/cachedb_shard.c:388:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,379 for (i = 0; i < db_cnt; ++i) { 2023-08-20T23:12:05,379 ^ 2023-08-20T23:12:05,381 vendor/hmmer/src/cachedb_shard.c:398:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,382 for (i = 0; i < db_cnt; i++){ 2023-08-20T23:12:05,382 ^ 2023-08-20T23:12:05,385 vendor/hmmer/src/cachedb_shard.c:434:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,386 for (i = 0; i < db_cnt; ++i) db_inx[i] = 0; 2023-08-20T23:12:05,387 ^ 2023-08-20T23:12:05,406 vendor/hmmer/src/cachedb_shard.c:445:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,407 if (inx >= seq_cnt) { printf("inx: %d\n", inx); return eslEFORMAT; } 2023-08-20T23:12:05,407 ^~ 2023-08-20T23:12:05,408 vendor/hmmer/src/cachedb_shard.c:446:19: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,408 if (sq->n + 1 > res_size) { printf("inx: %d size %d %d\n", inx, (int)sq->n + 1, (int)res_size); return eslEFORMAT; } 2023-08-20T23:12:05,409 ^ 2023-08-20T23:12:05,409 vendor/hmmer/src/cachedb_shard.c:463:41: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:05,410 if(db_seq_count[i] % num_shards == my_shard){ //this sequence is part of database i and belongs to this node's shard 2023-08-20T23:12:05,410 ^~ 2023-08-20T23:12:05,411 vendor/hmmer/src/cachedb_shard.c:475:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:05,411 if (db_key >= (1 << (db_cnt + 1))) { printf("inx: %d db %d %s\n", inx, db_key, sq->desc); return eslEFORMAT; } 2023-08-20T23:12:05,412 ^~ 2023-08-20T23:12:05,415 vendor/hmmer/src/cachedb_shard.c:544:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,416 for(i = 0; i < db_cnt; i++){ 2023-08-20T23:12:05,416 ^ 2023-08-20T23:12:05,417 vendor/hmmer/src/cachedb_shard.c:560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,417 for (i = 0 ; i < seq_cnt; ++i) { 2023-08-20T23:12:05,418 ^ 2023-08-20T23:12:05,427 vendor/hmmer/src/cachedb_shard.c:568:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,428 for (i = 0 ; i < seq_cnt; ++i) { 2023-08-20T23:12:05,428 ^ 2023-08-20T23:12:05,429 vendor/hmmer/src/cachedb_shard.c:585:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,430 for (i = 0; i < cache->db_cnt; ++i) { 2023-08-20T23:12:05,430 ^ 2023-08-20T23:12:05,432 vendor/hmmer/src/cachedb_shard.c:615:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:05,433 for (i = 0; i < db_cnt; ++i) { 2023-08-20T23:12:05,433 ^ 2023-08-20T23:12:05,800 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/heatmap.o from vendor/hmmer/src/heatmap.c 2023-08-20T23:12:05,801 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/heatmap.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/heatmap.o 2023-08-20T23:12:06,452 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmlogo.o from vendor/hmmer/src/hmmlogo.c 2023-08-20T23:12:06,454 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmlogo.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmlogo.o 2023-08-20T23:12:06,917 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_stotrace.o from vendor/hmmer/src/generic_stotrace.c 2023-08-20T23:12:06,919 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_stotrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_stotrace.o 2023-08-20T23:12:07,085 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback_chk.o from vendor/hmmer/src/generic_fwdback_chk.c 2023-08-20T23:12:07,085 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/generic_fwdback_chk.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback_chk.o 2023-08-20T23:12:08,027 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/emit.o from vendor/hmmer/src/emit.c 2023-08-20T23:12:08,030 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/emit.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/emit.o 2023-08-20T23:12:08,304 vendor/hmmer/src/generic_stotrace.c: In function ‘p7_GStochasticTrace’: 2023-08-20T23:12:08,305 vendor/hmmer/src/generic_stotrace.c:175:44: warning: ‘scur’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:08,306 if ( (scur == p7T_N || scur == p7T_J || scur == p7T_C) && scur == sprv) i--; 2023-08-20T23:12:08,307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2023-08-20T23:12:08,813 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2023-08-20T23:12:08,815 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2023-08-20T23:12:08,904 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2023-08-20T23:12:08,906 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2023-08-20T23:12:09,024 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2023-08-20T23:12:09,026 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2023-08-20T23:12:09,106 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2023-08-20T23:12:09,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2023-08-20T23:12:09,236 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2023-08-20T23:12:09,238 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2023-08-20T23:12:10,637 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/logsum.o from vendor/hmmer/src/logsum.c 2023-08-20T23:12:10,639 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/logsum.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/logsum.o 2023-08-20T23:12:10,679 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2023-08-20T23:12:10,681 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2023-08-20T23:12:10,830 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr.o from vendor/hmmer/src/hmmdwrkr.c 2023-08-20T23:12:10,833 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmdwrkr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr.o 2023-08-20T23:12:11,027 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2023-08-20T23:12:11,029 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2023-08-20T23:12:11,218 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/mpisupport.o from vendor/hmmer/src/mpisupport.c 2023-08-20T23:12:11,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/mpisupport.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/mpisupport.o 2023-08-20T23:12:11,439 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/seqmodel.o from vendor/hmmer/src/seqmodel.c 2023-08-20T23:12:11,441 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/seqmodel.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/seqmodel.o 2023-08-20T23:12:12,060 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2023-08-20T23:12:12,066 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2023-08-20T23:12:12,084 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_builder.o from vendor/hmmer/src/p7_builder.c 2023-08-20T23:12:12,088 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_builder.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_builder.o 2023-08-20T23:12:12,116 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2023-08-20T23:12:12,118 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2023-08-20T23:12:12,851 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2023-08-20T23:12:12,853 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2023-08-20T23:12:14,086 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelstats.o from vendor/hmmer/src/modelstats.c 2023-08-20T23:12:14,086 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/modelstats.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelstats.o 2023-08-20T23:12:14,179 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxchk.o from vendor/hmmer/src/p7_gmxchk.c 2023-08-20T23:12:14,182 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_gmxchk.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxchk.o 2023-08-20T23:12:15,967 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmd_search_stats.o from vendor/hmmer/src/p7_hmmd_search_stats.c 2023-08-20T23:12:15,971 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_hmmd_search_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmd_search_stats.o 2023-08-20T23:12:16,069 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hit.o from vendor/hmmer/src/p7_hit.c 2023-08-20T23:12:16,072 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_hit.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hit.o 2023-08-20T23:12:16,121 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2023-08-20T23:12:16,125 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2023-08-20T23:12:17,078 vendor/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Serialize’: 2023-08-20T23:12:17,079 vendor/hmmer/src/p7_hmmd_search_stats.c:89:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,080 network_64bit = esl_hton64(*((uint64_t *) &(obj->elapsed))); // ow, this hurts, but is probably the best way to get the 2023-08-20T23:12:17,080 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,081 vendor/hmmer/src/p7_hmmd_search_stats.c:97:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,082 network_64bit = esl_hton64(*((uint64_t *) &(obj->user))); 2023-08-20T23:12:17,082 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,083 vendor/hmmer/src/p7_hmmd_search_stats.c:103:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,083 network_64bit = esl_hton64(*((uint64_t *) &(obj->sys))); 2023-08-20T23:12:17,084 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,084 vendor/hmmer/src/p7_hmmd_search_stats.c:109:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,085 network_64bit = esl_hton64(*((uint64_t *) &(obj->Z))); 2023-08-20T23:12:17,085 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,086 vendor/hmmer/src/p7_hmmd_search_stats.c:115:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,086 network_64bit = esl_hton64(*((uint64_t *) &(obj->domZ))); 2023-08-20T23:12:17,087 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,087 vendor/hmmer/src/p7_hmmd_search_stats.c:205:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘const long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:17,088 for (i = 0; i < obj->nhits; i++) 2023-08-20T23:12:17,089 ^ 2023-08-20T23:12:17,089 vendor/hmmer/src/p7_hmmd_search_stats.c: In function ‘p7_hmmd_search_stats_Deserialize’: 2023-08-20T23:12:17,090 vendor/hmmer/src/p7_hmmd_search_stats.c:258:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,090 ret_obj->elapsed = *((double *) &host_64bit); 2023-08-20T23:12:17,090 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,091 vendor/hmmer/src/p7_hmmd_search_stats.c:264:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,091 ret_obj->user = *((double *) &host_64bit); 2023-08-20T23:12:17,092 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,092 vendor/hmmer/src/p7_hmmd_search_stats.c:270:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,093 ret_obj->sys = *((double *) &host_64bit); 2023-08-20T23:12:17,094 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,095 vendor/hmmer/src/p7_hmmd_search_stats.c:276:18: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,106 ret_obj->Z = *((double *) &host_64bit); 2023-08-20T23:12:17,107 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,107 vendor/hmmer/src/p7_hmmd_search_stats.c:282:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,108 ret_obj->domZ = *((double *) &host_64bit); 2023-08-20T23:12:17,108 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,109 vendor/hmmer/src/p7_hmmd_search_stats.c:380:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:17,109 for (i = 1; i < ret_obj->nhits; i++) 2023-08-20T23:12:17,110 ^ 2023-08-20T23:12:17,181 vendor/hmmer/src/p7_hit.c: In function ‘p7_hit_Serialize’: 2023-08-20T23:12:17,183 vendor/hmmer/src/p7_hit.c:287:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,184 network_64bit = esl_hton64(*((uint64_t *) &(obj->sortkey))); 2023-08-20T23:12:17,184 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,186 vendor/hmmer/src/p7_hit.c:292:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,186 network_32bit = esl_hton32(*((uint32_t *) &(obj->score))); 2023-08-20T23:12:17,187 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,188 vendor/hmmer/src/p7_hit.c:297:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,189 network_32bit = esl_hton32(*((uint32_t *) &(obj->pre_score))); 2023-08-20T23:12:17,189 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,190 vendor/hmmer/src/p7_hit.c:302:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,191 network_32bit = esl_hton32(*((uint32_t *) &(obj->sum_score))); 2023-08-20T23:12:17,191 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,193 vendor/hmmer/src/p7_hit.c:307:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,193 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-08-20T23:12:17,194 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,206 vendor/hmmer/src/p7_hit.c:312:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,206 network_64bit = esl_hton64(*((uint64_t *) &(obj->pre_lnP))); 2023-08-20T23:12:17,207 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,208 vendor/hmmer/src/p7_hit.c:317:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,208 network_64bit = esl_hton64(*((uint64_t *) &(obj->sum_lnP))); 2023-08-20T23:12:17,209 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,209 vendor/hmmer/src/p7_hit.c:322:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,209 network_32bit = esl_hton32(*((uint32_t *) &(obj->nexpected))); 2023-08-20T23:12:17,210 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,210 vendor/hmmer/src/p7_hit.c:403:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:17,211 if(ptr -(*buf + *n) != ser_size){ 2023-08-20T23:12:17,211 ^~ 2023-08-20T23:12:17,212 vendor/hmmer/src/p7_hit.c: In function ‘p7_hit_Deserialize’: 2023-08-20T23:12:17,212 vendor/hmmer/src/p7_hit.c:471:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,213 ret_obj->sortkey = *((double *) &host_64bit); 2023-08-20T23:12:17,213 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,214 vendor/hmmer/src/p7_hit.c:477:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,214 ret_obj->score = *((float *) &host_32bit); 2023-08-20T23:12:17,214 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,215 vendor/hmmer/src/p7_hit.c:483:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,215 ret_obj->pre_score = *((float *) &host_32bit); 2023-08-20T23:12:17,216 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,216 vendor/hmmer/src/p7_hit.c:489:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,217 ret_obj->sum_score = *((float *) &host_32bit); 2023-08-20T23:12:17,217 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,218 vendor/hmmer/src/p7_hit.c:495:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,218 ret_obj->lnP = *((double *) &host_64bit); 2023-08-20T23:12:17,219 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,219 vendor/hmmer/src/p7_hit.c:501:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,220 ret_obj->pre_lnP = *((double *) &host_64bit); 2023-08-20T23:12:17,221 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,222 vendor/hmmer/src/p7_hit.c:507:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,223 ret_obj->sum_lnP = *((double *) &host_64bit); 2023-08-20T23:12:17,224 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,225 vendor/hmmer/src/p7_hit.c:513:26: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,225 ret_obj->nexpected = *((float *) &host_32bit); 2023-08-20T23:12:17,226 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,226 vendor/hmmer/src/p7_hit.c:621:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:17,227 if((ptr - (buf + *n)) !=obj_size){ 2023-08-20T23:12:17,228 ^~ 2023-08-20T23:12:17,327 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2023-08-20T23:12:17,327 vendor/hmmer/src/p7_domain.c:228:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,328 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2023-08-20T23:12:17,328 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,329 vendor/hmmer/src/p7_domain.c:235:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,329 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2023-08-20T23:12:17,330 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,330 vendor/hmmer/src/p7_domain.c:240:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,330 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2023-08-20T23:12:17,331 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,331 vendor/hmmer/src/p7_domain.c:245:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,332 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2023-08-20T23:12:17,332 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,332 vendor/hmmer/src/p7_domain.c:250:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,333 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2023-08-20T23:12:17,333 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,334 vendor/hmmer/src/p7_domain.c:255:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,334 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2023-08-20T23:12:17,334 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,335 vendor/hmmer/src/p7_domain.c:290:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:17,335 if (ser_size != ptr - (*buf + *n)){ 2023-08-20T23:12:17,338 ^~ 2023-08-20T23:12:17,349 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2023-08-20T23:12:17,360 vendor/hmmer/src/p7_domain.c:379:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,369 ret_obj->envsc = *((float *) &host_32bit); 2023-08-20T23:12:17,376 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,377 vendor/hmmer/src/p7_domain.c:385:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,377 ret_obj->domcorrection = *((float *) &host_32bit); 2023-08-20T23:12:17,378 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,378 vendor/hmmer/src/p7_domain.c:391:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,379 ret_obj->dombias = *((float *) &host_32bit); 2023-08-20T23:12:17,379 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,380 vendor/hmmer/src/p7_domain.c:397:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,380 ret_obj->oasc = *((float *) &host_32bit); 2023-08-20T23:12:17,380 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,381 vendor/hmmer/src/p7_domain.c:403:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,382 ret_obj->bitscore = *((float *) &host_32bit); 2023-08-20T23:12:17,382 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,383 vendor/hmmer/src/p7_domain.c:409:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,383 ret_obj->lnP = *((double *) &host_64bit); 2023-08-20T23:12:17,384 ~^~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,384 vendor/hmmer/src/p7_domain.c:436:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2023-08-20T23:12:17,385 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2023-08-20T23:12:17,385 ~^~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:17,406 vendor/hmmer/src/p7_domain.c:442:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:17,406 if(ptr - (buf + *n) != obj_size){ 2023-08-20T23:12:17,407 ^~ 2023-08-20T23:12:17,626 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_alidisplay.o from vendor/hmmer/src/p7_alidisplay.c 2023-08-20T23:12:17,626 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_alidisplay.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_alidisplay.o 2023-08-20T23:12:17,912 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmwindow.o from vendor/hmmer/src/p7_hmmwindow.c 2023-08-20T23:12:17,914 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_hmmwindow.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmwindow.o 2023-08-20T23:12:18,481 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domaindef.o from vendor/hmmer/src/p7_domaindef.c 2023-08-20T23:12:18,483 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_domaindef.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domaindef.o 2023-08-20T23:12:18,798 vendor/hmmer/src/p7_alidisplay.c: In function ‘p7_alidisplay_Deserialize’: 2023-08-20T23:12:18,799 vendor/hmmer/src/p7_alidisplay.c:725:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:18,799 if(ret_obj->memsize < (obj_size - SER_BASE_SIZE)){ // ret_obj doesn't have enough space for this P7_ALIDISPLAY 2023-08-20T23:12:18,800 ^ 2023-08-20T23:12:18,805 vendor/hmmer/src/p7_alidisplay.c:885:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:18,806 if(mem_ptr - ret_obj->mem != (obj_size - SER_BASE_SIZE)){ 2023-08-20T23:12:18,806 ^~ 2023-08-20T23:12:18,935 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmm.o from vendor/hmmer/src/p7_hmm.c 2023-08-20T23:12:18,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmm.o 2023-08-20T23:12:19,330 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_pipeline.o from vendor/hmmer/src/p7_pipeline.c 2023-08-20T23:12:19,332 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_pipeline.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_pipeline.o 2023-08-20T23:12:20,141 vendor/hmmer/src/p7_hmm.c: In function ‘p7_hmm_Validate’: 2023-08-20T23:12:20,141 vendor/hmmer/src/p7_hmm.c:1282:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:20,142 if (hmm->flags & p7H_RF) { if (hmm->rf == NULL || strlen(hmm->rf) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_RF flag up, but rf string is invalid"); } 2023-08-20T23:12:20,143 ^~ 2023-08-20T23:12:20,143 vendor/hmmer/src/p7_hmm.c:1285:86: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:20,144 if (hmm->flags & p7H_MMASK) { if (hmm->mm == NULL || strlen(hmm->mm) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_MMASK flag up, but mm string is invalid"); } 2023-08-20T23:12:20,145 ^~ 2023-08-20T23:12:20,145 vendor/hmmer/src/p7_hmm.c:1288:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:20,146 if (hmm->flags & p7H_CONS) { if (hmm->consensus == NULL || strlen(hmm->consensus) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CONS flag up, but consensus string is invalid"); } 2023-08-20T23:12:20,147 ^~ 2023-08-20T23:12:20,147 vendor/hmmer/src/p7_hmm.c:1291:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:20,148 if (hmm->flags & p7H_CS) { if (hmm->cs == NULL || strlen(hmm->cs) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CS flag up, but cs string is invalid"); } 2023-08-20T23:12:20,148 ^~ 2023-08-20T23:12:20,149 vendor/hmmer/src/p7_hmm.c:1294:85: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:20,149 if (hmm->flags & p7H_CA) { if (hmm->ca == NULL || strlen(hmm->ca) != hmm->M+1) ESL_XFAIL(eslFAIL, errbuf, "p7H_CA flag up, but ca string is invalid"); } 2023-08-20T23:12:20,150 ^~ 2023-08-20T23:12:20,169 vendor/hmmer/src/p7_domaindef.c: In function ‘rescore_isolated_domain.isra.0’: 2023-08-20T23:12:20,170 vendor/hmmer/src/p7_domaindef.c:932:5: warning: ‘orig_L’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:20,171 p7_oprofile_ReconfigRestLength(om, orig_L); 2023-08-20T23:12:20,171 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:20,545 In file included from vendor/hmmer/src/p7_pipeline.c:15: 2023-08-20T23:12:20,546 vendor/hmmer/src/p7_pipeline.c: In function ‘p7_pli_postSSV_LongTarget’: 2023-08-20T23:12:20,548 vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:20,548 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-20T23:12:20,549 ^ 2023-08-20T23:12:20,549 vendor/hmmer/src/p7_pipeline.c:1407:61: note: in expansion of macro ‘ESL_MIN’ 2023-08-20T23:12:20,550 p7_hmmwindow_new(vit_windowlist, 0, new_n, 0, 0, ESL_MIN(max_window_len,new_len), 0.0, p7_NOCOMPLEMENT, new_len ); 2023-08-20T23:12:20,550 ^~~~~~~ 2023-08-20T23:12:20,552 vendor/easel/easel.h:431:42: warning: operand of ?: changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:12:20,552 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-20T23:12:20,553 ^~~ 2023-08-20T23:12:20,553 vendor/hmmer/src/p7_pipeline.c:1407:61: note: in expansion of macro ‘ESL_MIN’ 2023-08-20T23:12:20,553 p7_hmmwindow_new(vit_windowlist, 0, new_n, 0, 0, ESL_MIN(max_window_len,new_len), 0.0, p7_NOCOMPLEMENT, new_len ); 2023-08-20T23:12:20,554 ^~~~~~~ 2023-08-20T23:12:20,555 vendor/hmmer/src/p7_pipeline.c:1408:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:20,556 } while (new_len > max_window_len); 2023-08-20T23:12:20,556 ^ 2023-08-20T23:12:20,589 vendor/hmmer/src/p7_pipeline.c: In function ‘p7_Pipeline_LongTarget’: 2023-08-20T23:12:20,596 vendor/hmmer/src/p7_pipeline.c:1655:46: warning: operand of ?: changes signedness from ‘int64_t’ {aka ‘const long long int’} to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:12:20,596 (fmf != NULL ? seq_start : sq->start), 2023-08-20T23:12:20,597 ^~~~~~~~~ 2023-08-20T23:12:20,597 vendor/hmmer/src/p7_pipeline.c:1660:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint32_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:12:20,597 (fmf != NULL ? seq_data.length : -1), 2023-08-20T23:12:20,598 ^~ 2023-08-20T23:12:21,818 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gbands.o from vendor/hmmer/src/p7_gbands.c 2023-08-20T23:12:21,821 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_gbands.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gbands.o 2023-08-20T23:12:22,786 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmx.o from vendor/hmmer/src/p7_gmx.c 2023-08-20T23:12:22,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_gmx.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmx.o 2023-08-20T23:12:23,318 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2023-08-20T23:12:23,321 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2023-08-20T23:12:23,994 In file included from vendor/hmmer/src/hmmer.h:42, 2023-08-20T23:12:23,995 from vendor/hmmer/src/p7_gmx.c:11: 2023-08-20T23:12:23,995 vendor/hmmer/src/p7_gmx.c: In function ‘p7_gmx_GrowTo’: 2023-08-20T23:12:23,997 vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:23,998 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-20T23:12:23,999 ^ 2023-08-20T23:12:23,999 vendor/hmmer/src/p7_gmx.c:144:20: note: in expansion of macro ‘ESL_MIN’ 2023-08-20T23:12:24,000 gx->validR = ESL_MIN(gx->ncells / gx->allocW, gx->allocR); 2023-08-20T23:12:24,001 ^~~~~~~ 2023-08-20T23:12:24,002 vendor/easel/easel.h:431:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:12:24,003 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-20T23:12:24,003 ^~~ 2023-08-20T23:12:24,004 vendor/hmmer/src/p7_gmx.c:144:20: note: in expansion of macro ‘ESL_MIN’ 2023-08-20T23:12:24,005 gx->validR = ESL_MIN(gx->ncells / gx->allocW, gx->allocR); 2023-08-20T23:12:24,005 ^~~~~~~ 2023-08-20T23:12:24,536 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2023-08-20T23:12:24,537 vendor/hmmer/src/p7_hmmcache.c:111:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:24,538 for (i = 0; i < cache->n; i++) 2023-08-20T23:12:24,538 ^ 2023-08-20T23:12:24,540 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2023-08-20T23:12:24,541 vendor/hmmer/src/p7_hmmcache.c:139:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:24,541 for (i = 0; i < cache->n; i++) 2023-08-20T23:12:24,542 ^ 2023-08-20T23:12:24,544 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2023-08-20T23:12:24,545 vendor/hmmer/src/p7_hmmcache.c:162:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:24,546 for (i = 0; i < cache->n; i++) 2023-08-20T23:12:24,546 ^ 2023-08-20T23:12:24,573 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_bg.o from vendor/hmmer/src/p7_bg.c 2023-08-20T23:12:24,575 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_bg.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_bg.o 2023-08-20T23:12:25,050 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_spensemble.o from vendor/hmmer/src/p7_spensemble.c 2023-08-20T23:12:25,052 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_spensemble.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_spensemble.o 2023-08-20T23:12:25,154 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_alphabet.o from vendor/hmmer/src/fm_alphabet.c 2023-08-20T23:12:25,157 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/fm_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_alphabet.o 2023-08-20T23:12:25,633 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2023-08-20T23:12:25,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2023-08-20T23:12:26,718 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/null2.o from vendor/hmmer/src/impl_neon/null2.c 2023-08-20T23:12:26,720 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon 2023-08-20T23:12:26,722 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/null2.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/null2.o 2023-08-20T23:12:26,787 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2023-08-20T23:12:26,790 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2023-08-20T23:12:26,870 vendor/hmmer/src/p7_spensemble.c: In function ‘p7_spensemble_Cluster’: 2023-08-20T23:12:26,871 vendor/hmmer/src/p7_spensemble.c:294:25: warning: ‘mmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:26,872 int imax, jmax, kmax, mmax; 2023-08-20T23:12:26,872 ^~~~ 2023-08-20T23:12:26,873 vendor/hmmer/src/p7_spensemble.c:363:7: warning: ‘kmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:26,874 for (best_k = kmin; best_k <= kmax; best_k++) if (sp->epc[best_k-kmin] >= epc_threshold) break; 2023-08-20T23:12:26,874 ^~~ 2023-08-20T23:12:26,875 vendor/hmmer/src/p7_spensemble.c:294:13: warning: ‘jmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:26,876 int imax, jmax, kmax, mmax; 2023-08-20T23:12:26,876 ^~~~ 2023-08-20T23:12:26,876 vendor/hmmer/src/p7_spensemble.c:357:7: warning: ‘imax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:26,877 for (best_i = imin; best_i <= imax; best_i++) if (sp->epc[best_i-imin] >= epc_threshold) break; 2023-08-20T23:12:26,877 ^~~ 2023-08-20T23:12:26,878 vendor/hmmer/src/p7_spensemble.c:293:25: warning: ‘mmin’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:26,878 int imin, jmin, kmin, mmin; 2023-08-20T23:12:26,878 ^~~~ 2023-08-20T23:12:26,879 vendor/hmmer/src/p7_spensemble.c:362:82: warning: ‘kmin’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:26,879 for (h = 0; h < sp->n; h++) if (sp->assignment[h] == c) sp->epc[sp->sp[h].k-kmin]++; 2023-08-20T23:12:26,880 ~~~~~~~~~~~^~~~~ 2023-08-20T23:12:26,880 vendor/hmmer/src/p7_spensemble.c:293:13: warning: ‘jmin’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:26,881 int imin, jmin, kmin, mmin; 2023-08-20T23:12:26,881 ^~~~ 2023-08-20T23:12:27,664 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_tophits.o from vendor/hmmer/src/p7_tophits.c 2023-08-20T23:12:27,667 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_tophits.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_tophits.o 2023-08-20T23:12:27,732 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_profile.o from vendor/hmmer/src/p7_profile.c 2023-08-20T23:12:27,735 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_profile.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_profile.o 2023-08-20T23:12:27,935 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2023-08-20T23:12:27,936 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:27,936 if (ranges[lo].lower > end) return -1; 2023-08-20T23:12:27,937 ^ 2023-08-20T23:12:27,937 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:27,938 if (ranges[hi].upper < start) return -1; 2023-08-20T23:12:27,938 ^ 2023-08-20T23:12:27,939 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:27,940 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2023-08-20T23:12:27,940 ^ 2023-08-20T23:12:27,941 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:27,941 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-08-20T23:12:27,941 ^~ 2023-08-20T23:12:27,942 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:27,942 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2023-08-20T23:12:27,943 ^~ 2023-08-20T23:12:27,943 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:27,944 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-08-20T23:12:27,944 ^~ 2023-08-20T23:12:27,945 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:27,945 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2023-08-20T23:12:27,956 ^~ 2023-08-20T23:12:27,956 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2023-08-20T23:12:27,957 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2023-08-20T23:12:27,958 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-08-20T23:12:27,958 ^~ 2023-08-20T23:12:27,959 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:27,959 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2023-08-20T23:12:27,959 ^~ 2023-08-20T23:12:27,960 In file included from vendor/hmmer/src/fm_general.c:12: 2023-08-20T23:12:27,960 vendor/easel/easel.h:432:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:27,961 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-20T23:12:27,961 ^ 2023-08-20T23:12:27,962 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-08-20T23:12:27,962 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-08-20T23:12:27,963 ^~~~~~~ 2023-08-20T23:12:27,963 vendor/easel/easel.h:432:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:12:27,964 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2023-08-20T23:12:27,964 ^~~ 2023-08-20T23:12:27,965 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2023-08-20T23:12:27,965 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2023-08-20T23:12:27,965 ^~~~~~~ 2023-08-20T23:12:27,976 vendor/easel/easel.h:431:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:27,977 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-20T23:12:27,977 ^ 2023-08-20T23:12:27,978 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-08-20T23:12:27,978 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-08-20T23:12:27,978 ^~~~~~~ 2023-08-20T23:12:27,979 vendor/easel/easel.h:431:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2023-08-20T23:12:27,979 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2023-08-20T23:12:27,980 ^~~ 2023-08-20T23:12:27,980 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2023-08-20T23:12:27,981 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2023-08-20T23:12:27,981 ^~~~~~~ 2023-08-20T23:12:27,982 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:27,983 for (j= start; j<=end; j++) 2023-08-20T23:12:27,984 ^~ 2023-08-20T23:12:27,985 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2023-08-20T23:12:27,996 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-08-20T23:12:27,997 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-08-20T23:12:27,997 ^~ 2023-08-20T23:12:27,998 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-08-20T23:12:27,998 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2023-08-20T23:12:27,999 ^~ 2023-08-20T23:12:27,999 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2023-08-20T23:12:28,000 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,000 for (i=0; iseq_count; i++) { 2023-08-20T23:12:28,000 ^ 2023-08-20T23:12:28,001 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:28,001 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2023-08-20T23:12:28,002 ^~ 2023-08-20T23:12:28,002 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:28,003 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2023-08-20T23:12:28,003 ^~ 2023-08-20T23:12:28,004 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:28,004 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2023-08-20T23:12:28,005 ^~ 2023-08-20T23:12:28,005 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:28,016 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2023-08-20T23:12:28,016 ^~ 2023-08-20T23:12:28,017 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,017 for (i=0; iambig_list->count; i++) { 2023-08-20T23:12:28,018 ^ 2023-08-20T23:12:28,018 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,019 for (i=0; iseq_count; i++) 2023-08-20T23:12:28,019 ^ 2023-08-20T23:12:28,020 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2023-08-20T23:12:28,020 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,021 for (i=0; iseq_count; i++) { 2023-08-20T23:12:28,021 ^ 2023-08-20T23:12:28,652 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/stotrace.o from vendor/hmmer/src/impl_neon/stotrace.c 2023-08-20T23:12:28,654 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/stotrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/stotrace.o 2023-08-20T23:12:28,826 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Clone’: 2023-08-20T23:12:28,830 vendor/hmmer/src/p7_tophits.c:92:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,830 for (i = 0; i < h2->N; i++) { 2023-08-20T23:12:28,831 ^ 2023-08-20T23:12:28,832 vendor/hmmer/src/p7_tophits.c:100:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,832 for (i = 0; i < h2->N; i++) { 2023-08-20T23:12:28,833 ^ 2023-08-20T23:12:28,833 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Grow’: 2023-08-20T23:12:28,834 vendor/hmmer/src/p7_tophits.c:143:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,835 for (i = 0; i < h->N; i++) 2023-08-20T23:12:28,835 ^ 2023-08-20T23:12:28,858 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortBySortkey’: 2023-08-20T23:12:28,859 vendor/hmmer/src/p7_tophits.c:398:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,860 for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i; 2023-08-20T23:12:28,860 ^ 2023-08-20T23:12:28,861 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortBySeqidxAndAlipos’: 2023-08-20T23:12:28,861 vendor/hmmer/src/p7_tophits.c:431:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,862 for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i; 2023-08-20T23:12:28,862 ^ 2023-08-20T23:12:28,863 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_SortByModelnameAndAlipos’: 2023-08-20T23:12:28,864 vendor/hmmer/src/p7_tophits.c:452:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,865 for (i = 0; i < h->N; i++) h->hit[i] = h->unsrt + i; 2023-08-20T23:12:28,865 ^ 2023-08-20T23:12:28,866 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Merge’: 2023-08-20T23:12:28,867 vendor/hmmer/src/p7_tophits.c:496:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,867 for (i = 0; i < h1->N; i++) 2023-08-20T23:12:28,868 ^ 2023-08-20T23:12:28,869 vendor/hmmer/src/p7_tophits.c:504:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,869 for (i=0,j=0,k=0; i < h1->N && j < h2->N ; k++) 2023-08-20T23:12:28,870 ^ 2023-08-20T23:12:28,886 vendor/hmmer/src/p7_tophits.c:504:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,886 for (i=0,j=0,k=0; i < h1->N && j < h2->N ; k++) 2023-08-20T23:12:28,887 ^ 2023-08-20T23:12:28,887 vendor/hmmer/src/p7_tophits.c:506:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,888 while (i < h1->N) new_hit[k++] = h1->hit[i++]; 2023-08-20T23:12:28,888 ^ 2023-08-20T23:12:28,889 vendor/hmmer/src/p7_tophits.c:507:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,889 while (j < h2->N) new_hit[k++] = new2 + (h2->hit[j++] - h2->unsrt); 2023-08-20T23:12:28,889 ^ 2023-08-20T23:12:28,890 vendor/hmmer/src/p7_tophits.c:511:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,890 for (i = 0; i < h2->N; i++) 2023-08-20T23:12:28,891 ^ 2023-08-20T23:12:28,891 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxPositionLength’: 2023-08-20T23:12:28,892 vendor/hmmer/src/p7_tophits.c:559:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,892 for (i = 0; i < h->N; i++) { 2023-08-20T23:12:28,893 ^ 2023-08-20T23:12:28,893 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxNameLength’: 2023-08-20T23:12:28,893 vendor/hmmer/src/p7_tophits.c:589:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,894 for (max = 0, i = 0; i < h->N; i++) 2023-08-20T23:12:28,894 ^ 2023-08-20T23:12:28,895 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxAccessionLength’: 2023-08-20T23:12:28,895 vendor/hmmer/src/p7_tophits.c:608:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,906 for (max = 0, i = 0; i < h->N; i++) 2023-08-20T23:12:28,907 ^ 2023-08-20T23:12:28,907 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_GetMaxShownLength’: 2023-08-20T23:12:28,907 vendor/hmmer/src/p7_tophits.c:630:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,908 for (max = 0, i = 0; i < h->N; i++) 2023-08-20T23:12:28,908 ^ 2023-08-20T23:12:28,909 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Reuse’: 2023-08-20T23:12:28,909 vendor/hmmer/src/p7_tophits.c:663:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,910 for (i = 0; i < h->N; i++) 2023-08-20T23:12:28,910 ^ 2023-08-20T23:12:28,911 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Destroy’: 2023-08-20T23:12:28,911 vendor/hmmer/src/p7_tophits.c:693:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,912 for (i = 0; i < h->N; i++) 2023-08-20T23:12:28,912 ^ 2023-08-20T23:12:28,912 vendor/hmmer/src/p7_tophits.c: In function ‘workaround_bug_h74’: 2023-08-20T23:12:28,913 vendor/hmmer/src/p7_tophits.c:762:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,913 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,914 ^ 2023-08-20T23:12:28,914 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_ComputeNhmmerEvalues’: 2023-08-20T23:12:28,915 vendor/hmmer/src/p7_tophits.c:800:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,915 for (i = 0; i < th->N ; i++) 2023-08-20T23:12:28,926 ^ 2023-08-20T23:12:28,927 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_RemoveDuplicates’: 2023-08-20T23:12:28,927 vendor/hmmer/src/p7_tophits.c:836:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,927 for (i = 1; i < th->N; i++) 2023-08-20T23:12:28,928 ^ 2023-08-20T23:12:28,928 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Threshold’: 2023-08-20T23:12:28,929 vendor/hmmer/src/p7_tophits.c:935:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,929 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,930 ^ 2023-08-20T23:12:28,930 vendor/hmmer/src/p7_tophits.c:956:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,931 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,931 ^ 2023-08-20T23:12:28,932 vendor/hmmer/src/p7_tophits.c:974:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,932 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,933 ^ 2023-08-20T23:12:28,936 vendor/hmmer/src/p7_tophits.c:991:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,936 for (h = 0; h < th->N; h++) { 2023-08-20T23:12:28,937 ^ 2023-08-20T23:12:28,939 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_CompareRanking’: 2023-08-20T23:12:28,941 vendor/hmmer/src/p7_tophits.c:1069:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,941 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,942 ^ 2023-08-20T23:12:28,956 vendor/hmmer/src/p7_tophits.c:1085:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,957 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,957 ^ 2023-08-20T23:12:28,958 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’: 2023-08-20T23:12:28,958 vendor/hmmer/src/p7_tophits.c:1173:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,959 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,959 ^ 2023-08-20T23:12:28,961 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Domains’: 2023-08-20T23:12:28,962 vendor/hmmer/src/p7_tophits.c:1289:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,963 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,964 ^ 2023-08-20T23:12:28,988 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Alignment’: 2023-08-20T23:12:28,990 vendor/hmmer/src/p7_tophits.c:1528:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘const long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:28,990 for (h = 0; h < th->N; h++) 2023-08-20T23:12:28,991 ^ 2023-08-20T23:12:28,999 vendor/hmmer/src/p7_tophits.c:1554:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘const long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:29,000 for (h = 0; h < th->N; h++) 2023-08-20T23:12:29,000 ^ 2023-08-20T23:12:29,017 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularTargets’: 2023-08-20T23:12:29,018 vendor/hmmer/src/p7_tophits.c:1643:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:29,019 for (h = 0; h < th->N; h++) 2023-08-20T23:12:29,019 ^ 2023-08-20T23:12:29,031 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularDomains’: 2023-08-20T23:12:29,032 vendor/hmmer/src/p7_tophits.c:1736:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:29,033 for (h = 0; h < th->N; h++) 2023-08-20T23:12:29,034 ^ 2023-08-20T23:12:29,044 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_TabularXfam’: 2023-08-20T23:12:29,046 vendor/hmmer/src/p7_tophits.c:1838:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:29,047 for (h = 0; h < th->N; h++) 2023-08-20T23:12:29,047 ^ 2023-08-20T23:12:29,053 vendor/hmmer/src/p7_tophits.c:1872:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:29,054 for (h = 0; h < th->N; h++) 2023-08-20T23:12:29,054 ^ 2023-08-20T23:12:29,059 vendor/hmmer/src/p7_tophits.c:1893:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:29,059 for (h = 0; h < th->N; h++) 2023-08-20T23:12:29,060 ^ 2023-08-20T23:12:29,065 vendor/hmmer/src/p7_tophits.c:1927:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:29,066 for (h = 0; h < domHitlist->N; h++) 2023-08-20T23:12:29,066 ^ 2023-08-20T23:12:29,069 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_AliScores’: 2023-08-20T23:12:29,071 vendor/hmmer/src/p7_tophits.c:1980:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:29,072 for (h = 0; h < th->N; h++) { 2023-08-20T23:12:29,072 ^ 2023-08-20T23:12:30,045 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_sse.o from vendor/hmmer/src/fm_sse.c 2023-08-20T23:12:30,047 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/fm_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_sse.o 2023-08-20T23:12:30,470 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/io.o from vendor/hmmer/src/impl_neon/io.c 2023-08-20T23:12:30,473 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/io.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/io.o 2023-08-20T23:12:30,925 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/vitfilter.o from vendor/hmmer/src/impl_neon/vitfilter.c 2023-08-20T23:12:30,926 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/vitfilter.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/vitfilter.o 2023-08-20T23:12:31,162 vendor/hmmer/src/fm_sse.c: In function ‘fm_getOccCount’: 2023-08-20T23:12:31,164 vendor/hmmer/src/fm_sse.c:201:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘const long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:31,165 if (landmark >= fm->N) { // special case: for a count in the final block, just count from the bottom 2023-08-20T23:12:31,165 ^~ 2023-08-20T23:12:31,168 vendor/hmmer/src/fm_sse.c: In function ‘fm_getOccCountLT’: 2023-08-20T23:12:31,169 vendor/hmmer/src/fm_sse.c:389:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘const long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:31,170 if (landmark >= fm->N) { // special case: for a count in the final block, just count from the bottom 2023-08-20T23:12:31,170 ^~ 2023-08-20T23:12:31,173 vendor/hmmer/src/fm_sse.c:404:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:12:31,173 } else if ( b_pos != sb_pos * (meta->freq_cnt_sb / meta->freq_cnt_b)) { 2023-08-20T23:12:31,174 ^~ 2023-08-20T23:12:31,529 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_ssv.o from vendor/hmmer/src/fm_ssv.c 2023-08-20T23:12:31,530 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/fm_ssv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_ssv.o 2023-08-20T23:12:31,654 vendor/hmmer/src/impl_neon/io.c: In function ‘p7_oprofile_Write’: 2023-08-20T23:12:31,657 vendor/hmmer/src/impl_neon/io.c:100:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,657 if (fwrite((char *) om->name, sizeof(char), n+1, ffp) != n+1) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,658 ^~ 2023-08-20T23:12:31,662 vendor/hmmer/src/impl_neon/io.c:110:80: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,663 if (fwrite( (char *) om->sbv[x], sizeof(uint8x16_t), Q16x, ffp) != Q16x) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,664 ^~ 2023-08-20T23:12:31,665 vendor/hmmer/src/impl_neon/io.c:113:80: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,666 if (fwrite( (char *) om->rbv[x], sizeof(uint8x16_t), Q16, ffp) != Q16) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,667 ^~ 2023-08-20T23:12:31,671 vendor/hmmer/src/impl_neon/io.c:125:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,672 if (fwrite((char *) om->name, sizeof(char), n+1, pfp) != n+1) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,673 ^~ 2023-08-20T23:12:31,676 vendor/hmmer/src/impl_neon/io.c:133:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,677 if (fwrite((char *) om->acc, sizeof(char), n+1, pfp) != n+1) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,677 ^~ 2023-08-20T23:12:31,680 vendor/hmmer/src/impl_neon/io.c:142:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,681 if (fwrite((char *) om->desc, sizeof(char), n+1, pfp) != n+1) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,681 ^~ 2023-08-20T23:12:31,683 vendor/hmmer/src/impl_neon/io.c:145:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,684 if (fwrite((char *) om->rf, sizeof(char), om->M+2, pfp) != om->M+2) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,684 ^~ 2023-08-20T23:12:31,686 vendor/hmmer/src/impl_neon/io.c:146:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,686 if (fwrite((char *) om->mm, sizeof(char), om->M+2, pfp) != om->M+2) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,687 ^~ 2023-08-20T23:12:31,688 vendor/hmmer/src/impl_neon/io.c:147:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,689 if (fwrite((char *) om->cs, sizeof(char), om->M+2, pfp) != om->M+2) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,690 ^~ 2023-08-20T23:12:31,692 vendor/hmmer/src/impl_neon/io.c:148:77: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,693 if (fwrite((char *) om->consensus, sizeof(char), om->M+2, pfp) != om->M+2) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,693 ^~ 2023-08-20T23:12:31,706 vendor/hmmer/src/impl_neon/io.c:151:82: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,707 if (fwrite((char *) om->twv, sizeof(int16x8_t), 8*Q8, pfp) != 8*Q8) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,707 ^~ 2023-08-20T23:12:31,708 vendor/hmmer/src/impl_neon/io.c:153:82: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,708 if (fwrite( (char *) om->rwv[x], sizeof(int16x8_t), Q8, pfp) != Q8) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,709 ^~ 2023-08-20T23:12:31,709 vendor/hmmer/src/impl_neon/io.c:162:82: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,710 if (fwrite((char *) om->tfv, sizeof(float32x4_t), 8*Q4, pfp) != 8*Q4) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,710 ^~ 2023-08-20T23:12:31,711 vendor/hmmer/src/impl_neon/io.c:164:82: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:31,711 if (fwrite( (char *) om->rfv[x], sizeof(float32x4_t), Q4, pfp) != Q4) ESL_EXCEPTION_SYS(eslEWRITE, "oprofile write failed"); 2023-08-20T23:12:31,712 ^~ 2023-08-20T23:12:31,981 vendor/hmmer/src/p7_tophits.c: In function ‘p7_tophits_Targets’: 2023-08-20T23:12:31,982 vendor/hmmer/src/p7_tophits.c:1200:12: warning: ‘posw’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:31,983 if (fprintf(ofp, "%c %9.2g %6.1f %5.1f %-*s %*" PRId64 " %*" PRId64 "", 2023-08-20T23:12:31,983 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:31,984 newness, 2023-08-20T23:12:31,984 ~~~~~~~~ 2023-08-20T23:12:31,985 exp(th->hit[h]->lnP), // * pli->Z, 2023-08-20T23:12:31,985 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:31,986 th->hit[h]->score, 2023-08-20T23:12:31,986 ~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:31,987 eslCONST_LOG2R * th->hit[h]->dcl[d].dombias, // an nhmmer hit is really a domain, so this is the hit's bias correction 2023-08-20T23:12:31,987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:31,988 namew, showname, 2023-08-20T23:12:31,988 ~~~~~~~~~~~~~~~~ 2023-08-20T23:12:31,989 posw, th->hit[h]->dcl[d].iali, 2023-08-20T23:12:31,990 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:31,990 posw, th->hit[h]->dcl[d].jali) < 0) 2023-08-20T23:12:31,991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-08-20T23:12:32,708 vendor/hmmer/src/fm_ssv.c: In function ‘FM_mergeSeeds’: 2023-08-20T23:12:32,709 vendor/hmmer/src/fm_ssv.c:70:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:32,710 && ( next.n - next.k) == curr_diagval //overlapping diagonals will share the same value of (n - k) 2023-08-20T23:12:32,710 ^~ 2023-08-20T23:12:32,712 vendor/hmmer/src/fm_ssv.c:71:35: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:32,712 && next.n + next.length < curr_n + curr_len + ssv_length //overlapping, or close to it 2023-08-20T23:12:32,713 ^ 2023-08-20T23:12:32,716 vendor/hmmer/src/fm_ssv.c: In function ‘FM_backtrackSeed’: 2023-08-20T23:12:32,717 vendor/hmmer/src/fm_ssv.c:134:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-08-20T23:12:32,718 while ( j != fmf->term_loc && (j % fm_cfg->meta->freq_SA)) { //go until we hit a position in the full SA that was sampled during FM index construction 2023-08-20T23:12:32,718 ^~ 2023-08-20T23:12:32,720 vendor/hmmer/src/fm_ssv.c:141:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2023-08-20T23:12:32,721 return len + (j==fmf->term_loc ? 0 : fmf->SA[ j / fm_cfg->meta->freq_SA ]) ; // len is how many backward steps we had to take to find a sampled SA position 2023-08-20T23:12:32,721 ^~ 2023-08-20T23:12:32,740 vendor/hmmer/src/fm_ssv.c: In function ‘FM_extendSeed’: 2023-08-20T23:12:32,742 vendor/hmmer/src/fm_ssv.c:664:18: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘long long unsigned int’ [-Wsign-compare] 2023-08-20T23:12:32,742 if (target_end > fm->N-2) { 2023-08-20T23:12:32,743 ^ 2023-08-20T23:12:32,745 vendor/hmmer/src/fm_ssv.c:678:14: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2023-08-20T23:12:32,745 for ( ; k <= model_end; k++, n++) { 2023-08-20T23:12:32,746 ^~ 2023-08-20T23:12:33,336 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/fwdback.o from vendor/hmmer/src/impl_neon/fwdback.c 2023-08-20T23:12:33,336 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/fwdback.o 2023-08-20T23:12:33,934 vendor/hmmer/src/fm_ssv.c: In function ‘p7_SSVFM_longlarget’: 2023-08-20T23:12:33,935 vendor/hmmer/src/fm_ssv.c:696:31: warning: ‘max_hit_end’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:33,936 diag->length = max_hit_end - max_hit_start + 1; 2023-08-20T23:12:33,936 ~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-08-20T23:12:33,938 vendor/hmmer/src/fm_ssv.c:647:37: note: ‘max_hit_end’ was declared here 2023-08-20T23:12:33,938 int64_t hit_start, max_hit_start, max_hit_end; 2023-08-20T23:12:33,939 ^~~~~~~~~~~ 2023-08-20T23:12:33,940 vendor/hmmer/src/fm_ssv.c:695:32: warning: ‘max_hit_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:33,940 diag->k = model_start + max_hit_start - 1; 2023-08-20T23:12:33,941 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2023-08-20T23:12:33,942 vendor/hmmer/src/fm_ssv.c:647:22: note: ‘max_hit_start’ was declared here 2023-08-20T23:12:33,943 int64_t hit_start, max_hit_start, max_hit_end; 2023-08-20T23:12:33,944 ^~~~~~~~~~~~~ 2023-08-20T23:12:34,394 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/p7_omx.o from vendor/hmmer/src/impl_neon/p7_omx.c 2023-08-20T23:12:34,396 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/p7_omx.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/p7_omx.o 2023-08-20T23:12:34,886 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/p7_hmmfile.o from build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2023-08-20T23:12:34,886 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c build/temp.linux-armv7l-cpython-37/p7_hmmfile.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/p7_hmmfile.o 2023-08-20T23:12:35,553 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2023-08-20T23:12:35,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2023-08-20T23:12:36,173 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c: In function ‘p7_hmmfile_WriteBinary’: 2023-08-20T23:12:36,174 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1026:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,175 if (fwrite((char *) hmm->mat[k], sizeof(float), hmm->abc->K, fp) != hmm->abc->K) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-08-20T23:12:36,175 ^~ 2023-08-20T23:12:36,178 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1028:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,178 if (fwrite((char *) hmm->ins[k], sizeof(float), hmm->abc->K, fp) != hmm->abc->K) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-08-20T23:12:36,179 ^~ 2023-08-20T23:12:36,184 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1037:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,184 if ((hmm->flags & p7H_RF) && (fwrite((char *) hmm->rf, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* +2: 1..M and trailing \0 */ 2023-08-20T23:12:36,185 ^~ 2023-08-20T23:12:36,187 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1038:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,188 if ((hmm->flags & p7H_MMASK)&& (fwrite((char *) hmm->mm, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* +2: 1..M and trailing \0 */ 2023-08-20T23:12:36,188 ^~ 2023-08-20T23:12:36,190 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1039:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,191 if ((hmm->flags & p7H_CONS) && (fwrite((char *) hmm->consensus, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); /* don't need to test for >=3e format; p7H_CONS flag suffices (didn't exist pre-3e) */ 2023-08-20T23:12:36,191 ^~ 2023-08-20T23:12:36,193 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1040:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,193 if ((hmm->flags & p7H_CS) && (fwrite((char *) hmm->cs, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-08-20T23:12:36,194 ^~ 2023-08-20T23:12:36,196 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1041:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,196 if ((hmm->flags & p7H_CA) && (fwrite((char *) hmm->ca, sizeof(char), hmm->M+2, fp) != hmm->M+2)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-08-20T23:12:36,197 ^~ 2023-08-20T23:12:36,201 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1047:95: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,201 if ((hmm->flags & p7H_MAP) && (fwrite((char *) hmm->map, sizeof(int), hmm->M+1, fp) != hmm->M+1)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-08-20T23:12:36,202 ^~ 2023-08-20T23:12:36,206 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1064:96: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,206 if ((hmm->flags & p7H_COMPO) && (fwrite((char *) hmm->compo, sizeof(float), hmm->abc->K, fp) != hmm->abc->K)) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-08-20T23:12:36,207 ^~ 2023-08-20T23:12:36,349 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c: In function ‘multiline’: 2023-08-20T23:12:36,350 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:2022:44: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,351 if (fwrite(sptr, sizeof(char), n, fp) != n) ESL_EXCEPTION_SYS(eslEWRITE, "hmm write failed"); /* using fwrite lets us write fixed # of chars */ 2023-08-20T23:12:36,351 ^~ 2023-08-20T23:12:36,364 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c: In function ‘write_bin_string’: 2023-08-20T23:12:36,365 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:2145:56: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-08-20T23:12:36,366 if (fwrite((char *) s, sizeof(char), len, fp) != len) ESL_EXCEPTION_SYS(eslEWRITE, "hmm binary write failed"); 2023-08-20T23:12:36,367 ^~ 2023-08-20T23:12:36,539 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/decoding.o from vendor/hmmer/src/impl_neon/decoding.c 2023-08-20T23:12:36,542 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/decoding.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/decoding.o 2023-08-20T23:12:37,838 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/optacc.o from vendor/hmmer/src/impl_neon/optacc.c 2023-08-20T23:12:37,841 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/optacc.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/optacc.o 2023-08-20T23:12:38,208 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/mpi.o from vendor/hmmer/src/impl_neon/mpi.c 2023-08-20T23:12:38,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/mpi.o 2023-08-20T23:12:38,451 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/msvfilter.o from vendor/hmmer/src/impl_neon/msvfilter.c 2023-08-20T23:12:38,454 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/msvfilter.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/msvfilter.o 2023-08-20T23:12:40,162 vendor/hmmer/src/impl_neon/optacc.c: In function ‘p7_OATrace’: 2023-08-20T23:12:40,163 vendor/hmmer/src/impl_neon/optacc.c:268:21: warning: ‘kmax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:40,164 int q = (k-1) % Q; /* (q,r) is position of the current DP cell M(i,k) */ 2023-08-20T23:12:40,164 ~~^~~ 2023-08-20T23:12:40,165 vendor/hmmer/src/impl_neon/optacc.c:397:16: note: ‘kmax’ was declared here 2023-08-20T23:12:40,165 int smax, kmax; 2023-08-20T23:12:40,166 ^~~~ 2023-08-20T23:12:40,166 vendor/hmmer/src/impl_neon/optacc.c:272:3: warning: ‘smax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-20T23:12:40,167 switch (scur) { 2023-08-20T23:12:40,167 ^~~~~~ 2023-08-20T23:12:40,168 vendor/hmmer/src/impl_neon/optacc.c:397:10: note: ‘smax’ was declared here 2023-08-20T23:12:40,168 int smax, kmax; 2023-08-20T23:12:40,169 ^~~~ 2023-08-20T23:12:40,889 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_scoredata.o from vendor/hmmer/src/p7_scoredata.c 2023-08-20T23:12:40,890 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/p7_scoredata.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_scoredata.o 2023-08-20T23:12:41,239 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/ssvfilter.o from vendor/hmmer/src/impl_neon/ssvfilter.c 2023-08-20T23:12:41,241 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/ssvfilter.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/ssvfilter.o 2023-08-20T23:12:43,330 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmpgmd2msa.o from vendor/hmmer/src/hmmpgmd2msa.c 2023-08-20T23:12:43,332 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/hmmpgmd2msa.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmpgmd2msa.o 2023-08-20T23:12:44,394 vendor/hmmer/src/hmmpgmd2msa.c: In function ‘hmmpgmd2msa’: 2023-08-20T23:12:44,395 vendor/hmmer/src/hmmpgmd2msa.c:131:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:44,396 for (i = 0; i < stats->nhits; ++i) { 2023-08-20T23:12:44,396 ^ 2023-08-20T23:12:44,397 vendor/hmmer/src/hmmpgmd2msa.c:144:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:44,398 for (i=0; inhits; i++) { 2023-08-20T23:12:44,398 ^ 2023-08-20T23:12:44,399 vendor/hmmer/src/hmmpgmd2msa.c:163:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:44,399 for (i = 0; i < th->N; i++) { 2023-08-20T23:12:44,400 ^ 2023-08-20T23:12:44,400 vendor/hmmer/src/hmmpgmd2msa.c:172:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:44,401 for (i = 0; i < th->N; i++) { 2023-08-20T23:12:44,401 ^ 2023-08-20T23:12:44,408 vendor/hmmer/src/hmmpgmd2msa.c: In function ‘hmmpgmd2stats_old’: 2023-08-20T23:12:44,409 vendor/hmmer/src/hmmpgmd2msa.c:311:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:44,409 for (i=0; inhits; i++) { 2023-08-20T23:12:44,410 ^ 2023-08-20T23:12:44,410 vendor/hmmer/src/hmmpgmd2msa.c:327:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:44,411 for (i = 0; i < th.N; i++) 2023-08-20T23:12:44,411 ^ 2023-08-20T23:12:44,418 vendor/hmmer/src/hmmpgmd2msa.c:450:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:44,419 for (i = 0; i < th.N; i++) { 2023-08-20T23:12:44,419 ^ 2023-08-20T23:12:44,421 vendor/hmmer/src/hmmpgmd2msa.c:473:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2023-08-20T23:12:44,421 for (i = 0; i < th.N; i++) { 2023-08-20T23:12:44,422 ^ 2023-08-20T23:14:28,141 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/p7_oprofile.o from vendor/hmmer/src/impl_neon/p7_oprofile.c 2023-08-20T23:14:28,144 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -mfpu=neon -DeslENABLE_NEON=1 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -I/usr/include/python3.7m -c vendor/hmmer/src/impl_neon/p7_oprofile.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/p7_oprofile.o 2023-08-20T23:14:35,182 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libhmmer.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/cachedb.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/cachedb_shard.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/emit.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/evalues.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/eweight.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_decoding.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback_chk.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback_banded.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_null2.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_optacc.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_stotrace.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_viterbi.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/h2_io.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/heatmap.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmlogo.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/logsum.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelstats.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/mpisupport.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/seqmodel.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_alidisplay.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_bg.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_builder.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domaindef.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gbands.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmx.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxchk.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hit.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmm.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmd_search_stats.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmwindow.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_pipeline.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_profile.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_spensemble.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_tophits.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_scoredata.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmpgmd2msa.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_sse.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_ssv.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/p7_hmmfile.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/null2.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/stotrace.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/vitfilter.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/fwdback.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/decoding.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/io.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/p7_omx.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/optacc.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/ssvfilter.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/p7_oprofile.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/mpi.o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/impl_neon/msvfilter.o 2023-08-20T23:14:35,944 running build_ext 2023-08-20T23:15:58,173 Compiling pyhmmer/errors.pyx because it changed. 2023-08-20T23:15:58,173 Compiling pyhmmer/easel.pyx because it changed. 2023-08-20T23:15:58,174 Compiling pyhmmer/plan7.pyx because it changed. 2023-08-20T23:15:58,174 Compiling pyhmmer/daemon.pyx because it changed. 2023-08-20T23:15:58,174 [1/4] Cythonizing pyhmmer/daemon.pyx 2023-08-20T23:15:58,175 [2/4] Cythonizing pyhmmer/easel.pyx 2023-08-20T23:15:58,176 [3/4] Cythonizing pyhmmer/errors.pyx 2023-08-20T23:15:58,176 [4/4] Cythonizing pyhmmer/plan7.pyx 2023-08-20T23:15:58,179 creating tmp 2023-08-20T23:15:58,180 creating tmp/pip-wheel-0chl41pi 2023-08-20T23:15:58,182 creating tmp/pip-wheel-0chl41pi/pyhmmer_9b6f089383e74c2c928c3ffaaf432819 2023-08-20T23:15:58,183 creating tmp/pip-wheel-0chl41pi/pyhmmer_9b6f089383e74c2c928c3ffaaf432819/build 2023-08-20T23:15:58,184 creating tmp/pip-wheel-0chl41pi/pyhmmer_9b6f089383e74c2c928c3ffaaf432819/build/temp.linux-armv7l-cpython-37 2023-08-20T23:15:58,186 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -I/usr/include/python3.7m -c /tmp/pip-wheel-0chl41pi/pyhmmer_9b6f089383e74c2c928c3ffaaf432819/build/temp.linux-armv7l-cpython-37/have_getidfh1t6qg3.c -o tmp/pip-wheel-0chl41pi/pyhmmer_9b6f089383e74c2c928c3ffaaf432819/build/temp.linux-armv7l-cpython-37/have_getidfh1t6qg3.o -Werror=implicit-function-declaration 2023-08-20T23:15:59,010 building 'pyhmmer.errors' extension 2023-08-20T23:15:59,012 creating build/temp.linux-armv7l-cpython-37/pyhmmer 2023-08-20T23:15:59,013 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_NEON=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-armv7l-cpython-37 -Ivendor/easel -I/usr/include/python3.7m -c pyhmmer/errors.c -o build/temp.linux-armv7l-cpython-37/pyhmmer/errors.o -mfpu=neon -Wno-unused-variable 2023-08-20T23:16:32,917 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-cpython-37/pyhmmer/errors.o build/temp.linux-armv7l-cpython-37/libeasel.a -Lbuild/temp.linux-armv7l-cpython-37 -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-37 -leasel -ldivsufsort -leasel -lhmmer -o build/lib.linux-armv7l-cpython-37/pyhmmer/errors.cpython-37m-arm-linux-gnueabihf.so -mfpu=neon 2023-08-20T23:16:58,184 building 'pyhmmer.easel' extension 2023-08-20T23:16:58,186 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_NEON=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-armv7l-cpython-37 -Ivendor/easel -I/usr/include/python3.7m -c pyhmmer/easel.c -o build/temp.linux-armv7l-cpython-37/pyhmmer/easel.o -mfpu=neon -Wno-unused-variable 2023-08-20T23:16:59,040 In file included from pyhmmer/easel.c:1139: 2023-08-20T23:16:59,040 pyhmmer/fileobj/linux.h: In function ‘fileobj_linux_read’: 2023-08-20T23:16:59,041 pyhmmer/fileobj/linux.h:48:13: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:16:59,041 if (len > size) { 2023-08-20T23:16:59,042 ^ 2023-08-20T23:25:26,086 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-cpython-37/pyhmmer/easel.o build/temp.linux-armv7l-cpython-37/libeasel.a -Lbuild/temp.linux-armv7l-cpython-37 -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-37 -leasel -ldivsufsort -leasel -lhmmer -o build/lib.linux-armv7l-cpython-37/pyhmmer/easel.cpython-37m-arm-linux-gnueabihf.so -mfpu=neon 2023-08-20T23:33:14,936 vendor/easel/esl_sqio.h:124:13: warning: type of ‘esl_sqfile_Open’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,937 extern int esl_sqfile_Open(const char *seqfile, int fmt, const char *env, ESL_SQFILE **ret_sqfp); 2023-08-20T23:33:14,937 ^ 2023-08-20T23:33:14,938 vendor/easel/esl_sqio.c:85:1: note: ‘esl_sqfile_Open’ was previously declared here 2023-08-20T23:33:14,938 esl_sqfile_Open(const char *filename, int format, const char *env, ESL_SQFILE **ret_sqfp) 2023-08-20T23:33:14,938 ^ 2023-08-20T23:33:14,939 vendor/easel/esl_sqio.c:85:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,939 vendor/easel/esl_sqio.h:128:13: warning: type of ‘esl_sqfile_SetDigital’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,939 extern int esl_sqfile_SetDigital(ESL_SQFILE *sqfp, const ESL_ALPHABET *abc); 2023-08-20T23:33:14,940 ^ 2023-08-20T23:33:14,940 vendor/easel/esl_sqio.c:286:1: note: ‘esl_sqfile_SetDigital’ was previously declared here 2023-08-20T23:33:14,940 esl_sqfile_SetDigital(ESL_SQFILE *sqfp, const ESL_ALPHABET *abc) 2023-08-20T23:33:14,941 ^ 2023-08-20T23:33:14,941 vendor/easel/esl_sqio.c:286:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,941 vendor/easel/esl_sq.h:164:16: warning: type of ‘esl_sq_IsDigital’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,942 extern int esl_sq_IsDigital(const ESL_SQ *sq); 2023-08-20T23:33:14,942 ^ 2023-08-20T23:33:14,942 vendor/easel/esl_sq.c:492:1: note: ‘esl_sq_IsDigital’ was previously declared here 2023-08-20T23:33:14,942 esl_sq_IsDigital(const ESL_SQ *sq) 2023-08-20T23:33:14,943 ^ 2023-08-20T23:33:14,943 vendor/easel/esl_sq.c:492:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,943 pyhmmer/reexports/esl_sqio_ascii.h:18:7: warning: type of ‘sqascii_GuessFileFormat’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,944 int sqascii_GuessFileFormat(ESL_SQFILE *sqfp, int *ret_fmt); 2023-08-20T23:33:14,944 ^ 2023-08-20T23:33:14,944 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:373:1: note: ‘sqascii_GuessFileFormat’ was previously declared here 2023-08-20T23:33:14,944 sqascii_GuessFileFormat(ESL_SQFILE *sqfp, int *ret_fmt) 2023-08-20T23:33:14,945 ^ 2023-08-20T23:33:14,945 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:373:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,945 pyhmmer/reexports/esl_sqio_ascii.h:51:6: warning: type of ‘config_embl’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,946 void config_embl(ESL_SQFILE *sqfp); 2023-08-20T23:33:14,946 ^ 2023-08-20T23:33:14,946 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2531:1: note: ‘config_embl’ was previously declared here 2023-08-20T23:33:14,947 config_embl(ESL_SQFILE *sqfp) 2023-08-20T23:33:14,947 ^ 2023-08-20T23:33:14,947 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2531:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,948 pyhmmer/reexports/esl_sqio_ascii.h:52:6: warning: type of ‘inmap_embl’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,948 void inmap_embl (ESL_SQFILE *sqfp, const ESL_DSQ *abc_inmap); 2023-08-20T23:33:14,948 ^ 2023-08-20T23:33:14,948 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2543:1: note: ‘inmap_embl’ was previously declared here 2023-08-20T23:33:14,949 inmap_embl(ESL_SQFILE *sqfp, const ESL_DSQ *abc_inmap) 2023-08-20T23:33:14,949 ^ 2023-08-20T23:33:14,949 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2543:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,950 pyhmmer/reexports/esl_sqio_ascii.h:58:6: warning: type of ‘config_genbank’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,950 void config_genbank(ESL_SQFILE *sqfp); 2023-08-20T23:33:14,950 ^ 2023-08-20T23:33:14,950 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2780:1: note: ‘config_genbank’ was previously declared here 2023-08-20T23:33:14,951 config_genbank(ESL_SQFILE *sqfp) 2023-08-20T23:33:14,951 ^ 2023-08-20T23:33:14,951 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2780:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,952 pyhmmer/reexports/esl_sqio_ascii.h:59:6: warning: type of ‘inmap_genbank’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,952 void inmap_genbank (ESL_SQFILE *sqfp, const ESL_DSQ *abc_inmap); 2023-08-20T23:33:14,952 ^ 2023-08-20T23:33:14,952 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2792:1: note: ‘inmap_genbank’ was previously declared here 2023-08-20T23:33:14,953 inmap_genbank(ESL_SQFILE *sqfp, const ESL_DSQ *abc_inmap) 2023-08-20T23:33:14,953 ^ 2023-08-20T23:33:14,953 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2792:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,954 pyhmmer/reexports/esl_sqio_ascii.h:65:6: warning: type of ‘config_fasta’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,954 void config_fasta(ESL_SQFILE *sqfp); 2023-08-20T23:33:14,954 ^ 2023-08-20T23:33:14,954 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2954:1: note: ‘config_fasta’ was previously declared here 2023-08-20T23:33:14,955 config_fasta(ESL_SQFILE *sqfp) 2023-08-20T23:33:14,955 ^ 2023-08-20T23:33:14,955 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2954:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,956 pyhmmer/reexports/esl_sqio_ascii.h:66:6: warning: type of ‘inmap_fasta’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,956 void inmap_fasta (ESL_SQFILE *sqfp, const ESL_DSQ *abc_inmap); 2023-08-20T23:33:14,956 ^ 2023-08-20T23:33:14,957 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2966:1: note: ‘inmap_fasta’ was previously declared here 2023-08-20T23:33:14,957 inmap_fasta(ESL_SQFILE *sqfp, const ESL_DSQ *abc_inmap) 2023-08-20T23:33:14,957 ^ 2023-08-20T23:33:14,957 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2966:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,958 pyhmmer/reexports/esl_sqio_ascii.h:72:6: warning: type of ‘config_daemon’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,958 void config_daemon(ESL_SQFILE *sqfp); 2023-08-20T23:33:14,958 ^ 2023-08-20T23:33:14,959 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:3198:1: note: ‘config_daemon’ was previously declared here 2023-08-20T23:33:14,959 config_daemon(ESL_SQFILE *sqfp) 2023-08-20T23:33:14,959 ^ 2023-08-20T23:33:14,959 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:3198:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,960 pyhmmer/reexports/esl_sqio_ascii.h:73:6: warning: type of ‘inmap_daemon’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,960 void inmap_daemon (ESL_SQFILE *sqfp, const ESL_DSQ *abc_inmap); 2023-08-20T23:33:14,960 ^ 2023-08-20T23:33:14,961 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:3210:1: note: ‘inmap_daemon’ was previously declared here 2023-08-20T23:33:14,961 inmap_daemon(ESL_SQFILE *sqfp, const ESL_DSQ *abc_inmap) 2023-08-20T23:33:14,961 ^ 2023-08-20T23:33:14,961 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:3210:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,962 pyhmmer/reexports/esl_sqio_ascii.h:42:6: warning: type of ‘loadbuf’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,962 int loadbuf (ESL_SQFILE *sqfp); 2023-08-20T23:33:14,962 ^ 2023-08-20T23:33:14,963 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2117:1: note: ‘loadbuf’ was previously declared here 2023-08-20T23:33:14,963 loadbuf(ESL_SQFILE *sqfp) 2023-08-20T23:33:14,963 ^ 2023-08-20T23:33:14,963 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:2117:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,964 pyhmmer/reexports/esl_sqio_ascii.h:77:6: warning: type of ‘fileheader_hmmpgmd’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,964 int fileheader_hmmpgmd(ESL_SQFILE *sqfp); 2023-08-20T23:33:14,964 ^ 2023-08-20T23:33:14,965 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:3379:1: note: ‘fileheader_hmmpgmd’ was previously declared here 2023-08-20T23:33:14,965 fileheader_hmmpgmd(ESL_SQFILE *sqfp) 2023-08-20T23:33:14,965 ^ 2023-08-20T23:33:14,965 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:3379:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,966 vendor/easel/esl_sqio_ascii.h:81:13: warning: type of ‘esl_sqascii_WriteFasta’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,966 extern int esl_sqascii_WriteFasta(FILE *fp, ESL_SQ *s, int update); 2023-08-20T23:33:14,966 ^ 2023-08-20T23:33:14,967 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:3159:1: note: ‘esl_sqascii_WriteFasta’ was previously declared here 2023-08-20T23:33:14,967 esl_sqascii_WriteFasta(FILE *fp, ESL_SQ *sq, int save_offsets) 2023-08-20T23:33:14,967 ^ 2023-08-20T23:33:14,967 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:3159:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,968 vendor/easel/esl_msafile.h:123:12: warning: type of ‘esl_msafile_Write’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,968 extern int esl_msafile_Write(FILE *fp, ESL_MSA *msa, int fmt); 2023-08-20T23:33:14,968 ^ 2023-08-20T23:33:14,969 vendor/easel/esl_msafile.c:1100:1: note: ‘esl_msafile_Write’ was previously declared here 2023-08-20T23:33:14,969 esl_msafile_Write(FILE *fp, ESL_MSA *msa, int fmt) 2023-08-20T23:33:14,969 ^ 2023-08-20T23:33:14,970 vendor/easel/esl_msafile.c:1100:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,970 vendor/easel/esl_msa.h:198:17: warning: type of ‘esl_msa_Compare’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,970 extern int esl_msa_Compare (ESL_MSA *a1, ESL_MSA *a2); 2023-08-20T23:33:14,971 ^ 2023-08-20T23:33:14,971 vendor/easel/esl_msa.c:3204:1: note: ‘esl_msa_Compare’ was previously declared here 2023-08-20T23:33:14,971 esl_msa_Compare(ESL_MSA *a1, ESL_MSA *a2) 2023-08-20T23:33:14,971 ^ 2023-08-20T23:33:14,972 vendor/easel/esl_msa.c:3204:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,972 vendor/easel/esl_msa.h:152:12: warning: type of ‘esl_msa_SetAccession’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,972 extern int esl_msa_SetAccession (ESL_MSA *msa, const char *s, esl_pos_t n); 2023-08-20T23:33:14,973 ^ 2023-08-20T23:33:14,973 vendor/easel/esl_msa.c:1090:1: note: ‘esl_msa_SetAccession’ was previously declared here 2023-08-20T23:33:14,973 esl_msa_SetAccession(ESL_MSA *msa, const char *s, esl_pos_t n) 2023-08-20T23:33:14,973 ^ 2023-08-20T23:33:14,974 vendor/easel/esl_msa.c:1090:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,974 vendor/easel/esl_msa.h:153:12: warning: type of ‘esl_msa_SetAuthor’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,974 extern int esl_msa_SetAuthor (ESL_MSA *msa, const char *s, esl_pos_t n); 2023-08-20T23:33:14,974 ^ 2023-08-20T23:33:14,975 vendor/easel/esl_msa.c:1118:1: note: ‘esl_msa_SetAuthor’ was previously declared here 2023-08-20T23:33:14,975 esl_msa_SetAuthor(ESL_MSA *msa, const char *s, esl_pos_t n) 2023-08-20T23:33:14,975 ^ 2023-08-20T23:33:14,976 vendor/easel/esl_msa.c:1118:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,976 vendor/easel/esl_msa.h:150:12: warning: type of ‘esl_msa_SetName’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,976 extern int esl_msa_SetName (ESL_MSA *msa, const char *s, esl_pos_t n); 2023-08-20T23:33:14,977 ^ 2023-08-20T23:33:14,977 vendor/easel/esl_msa.c:1035:1: note: ‘esl_msa_SetName’ was previously declared here 2023-08-20T23:33:14,977 esl_msa_SetName(ESL_MSA *msa, const char *s, esl_pos_t n) 2023-08-20T23:33:14,977 ^ 2023-08-20T23:33:14,978 vendor/easel/esl_msa.c:1035:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,978 vendor/easel/esl_msa.h:151:12: warning: type of ‘esl_msa_SetDesc’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,978 extern int esl_msa_SetDesc (ESL_MSA *msa, const char *s, esl_pos_t n); 2023-08-20T23:33:14,979 ^ 2023-08-20T23:33:14,979 vendor/easel/esl_msa.c:1063:1: note: ‘esl_msa_SetDesc’ was previously declared here 2023-08-20T23:33:14,979 esl_msa_SetDesc(ESL_MSA *msa, const char *s, esl_pos_t n) 2023-08-20T23:33:14,979 ^ 2023-08-20T23:33:14,980 vendor/easel/esl_msa.c:1063:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,980 vendor/easel/esl_sq.h:193:16: warning: type of ‘esl_sq_FetchFromMSA’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,980 extern int esl_sq_FetchFromMSA(const ESL_MSA *msa, int which, ESL_SQ **ret_sq); 2023-08-20T23:33:14,980 ^ 2023-08-20T23:33:14,981 vendor/easel/esl_sq.c:1884:1: note: ‘esl_sq_FetchFromMSA’ was previously declared here 2023-08-20T23:33:14,981 esl_sq_FetchFromMSA(const ESL_MSA *msa, int which, ESL_SQ **ret_sq) 2023-08-20T23:33:14,981 ^ 2023-08-20T23:33:14,982 vendor/easel/esl_sq.c:1884:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,982 vendor/easel/esl_msa.h:140:17: warning: type of ‘esl_msa_Destroy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,982 extern void esl_msa_Destroy(ESL_MSA *msa); 2023-08-20T23:33:14,982 ^ 2023-08-20T23:33:14,983 vendor/easel/esl_msa.c:505:1: note: ‘esl_msa_Destroy’ was previously declared here 2023-08-20T23:33:14,983 esl_msa_Destroy(ESL_MSA *msa) 2023-08-20T23:33:14,983 ^ 2023-08-20T23:33:14,984 vendor/easel/esl_msa.c:505:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,984 vendor/easel/esl_sq.h:169:16: warning: type of ‘esl_sq_SetAccession’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,984 extern int esl_sq_SetAccession (ESL_SQ *sq, const char *acc); 2023-08-20T23:33:14,984 ^ 2023-08-20T23:33:14,985 vendor/easel/esl_sq.c:1087:1: note: ‘esl_sq_SetAccession’ was previously declared here 2023-08-20T23:33:14,985 esl_sq_SetAccession(ESL_SQ *sq, const char *acc) 2023-08-20T23:33:14,985 ^ 2023-08-20T23:33:14,986 vendor/easel/esl_sq.c:1087:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,986 vendor/easel/esl_sq.h:168:16: warning: type of ‘esl_sq_SetName’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,986 extern int esl_sq_SetName (ESL_SQ *sq, const char *name); 2023-08-20T23:33:14,986 ^ 2023-08-20T23:33:14,987 vendor/easel/esl_sq.c:1049:1: note: ‘esl_sq_SetName’ was previously declared here 2023-08-20T23:33:14,987 esl_sq_SetName(ESL_SQ *sq, const char *name) 2023-08-20T23:33:14,987 ^ 2023-08-20T23:33:14,988 vendor/easel/esl_sq.c:1049:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,988 vendor/easel/esl_sq.h:170:16: warning: type of ‘esl_sq_SetDesc’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,988 extern int esl_sq_SetDesc (ESL_SQ *sq, const char *desc); 2023-08-20T23:33:14,988 ^ 2023-08-20T23:33:14,989 vendor/easel/esl_sq.c:1127:1: note: ‘esl_sq_SetDesc’ was previously declared here 2023-08-20T23:33:14,989 esl_sq_SetDesc(ESL_SQ *sq, const char *desc) 2023-08-20T23:33:14,989 ^ 2023-08-20T23:33:14,990 vendor/easel/esl_sq.c:1127:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,990 vendor/easel/esl_sq.h:171:16: warning: type of ‘esl_sq_SetSource’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,990 extern int esl_sq_SetSource (ESL_SQ *sq, const char *source); 2023-08-20T23:33:14,991 ^ 2023-08-20T23:33:14,991 vendor/easel/esl_sq.c:1165:1: note: ‘esl_sq_SetSource’ was previously declared here 2023-08-20T23:33:14,991 esl_sq_SetSource(ESL_SQ *sq, const char *source) 2023-08-20T23:33:14,992 ^ 2023-08-20T23:33:14,992 vendor/easel/esl_sq.c:1165:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,992 vendor/easel/esl_sq.h:165:16: warning: type of ‘esl_sq_IsText’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,992 extern int esl_sq_IsText (const ESL_SQ *sq); 2023-08-20T23:33:14,993 ^ 2023-08-20T23:33:14,993 vendor/easel/esl_sq.c:506:1: note: ‘esl_sq_IsText’ was previously declared here 2023-08-20T23:33:14,993 esl_sq_IsText(const ESL_SQ *sq) 2023-08-20T23:33:14,994 ^ 2023-08-20T23:33:14,994 vendor/easel/esl_sq.c:506:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,994 vendor/easel/esl_sq.h:166:16: warning: type of ‘esl_sq_Destroy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,994 extern void esl_sq_Destroy (ESL_SQ *sq); 2023-08-20T23:33:14,995 ^ 2023-08-20T23:33:14,995 vendor/easel/esl_sq.c:550:1: note: ‘esl_sq_Destroy’ was previously declared here 2023-08-20T23:33:14,995 esl_sq_Destroy(ESL_SQ *sq) 2023-08-20T23:33:14,996 ^ 2023-08-20T23:33:14,996 vendor/easel/esl_sq.c:550:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,996 vendor/easel/esl_msa.h:136:17: warning: type of ‘esl_msa_Create’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,996 extern ESL_MSA *esl_msa_Create(int nseq, int64_t alen); 2023-08-20T23:33:14,997 ^ 2023-08-20T23:33:14,997 vendor/easel/esl_msa.c:86:1: note: ‘esl_msa_Create’ was previously declared here 2023-08-20T23:33:14,997 esl_msa_Create(int nseq, int64_t alen) 2023-08-20T23:33:14,998 ^ 2023-08-20T23:33:14,998 vendor/easel/esl_msa.c:86:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:14,998 vendor/easel/esl_sqio.h:136:14: warning: type of ‘esl_sqio_Parse’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:14,998 extern int esl_sqio_Parse (char *buffer, int size, ESL_SQ *s, int format); 2023-08-20T23:33:14,999 ^ 2023-08-20T23:33:14,999 vendor/easel/esl_sqio.c:543:1: note: ‘esl_sqio_Parse’ was previously declared here 2023-08-20T23:33:14,999 esl_sqio_Parse(char *buf, int size, ESL_SQ *s, int format) 2023-08-20T23:33:15,000 ^ 2023-08-20T23:33:15,000 vendor/easel/esl_sqio.c:543:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,000 vendor/easel/esl_sqio.h:131:14: warning: type of ‘esl_sqio_Read’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,000 extern int esl_sqio_Read (ESL_SQFILE *sqfp, ESL_SQ *sq); 2023-08-20T23:33:15,001 ^ 2023-08-20T23:33:15,001 vendor/easel/esl_sqio.c:356:1: note: ‘esl_sqio_Read’ was previously declared here 2023-08-20T23:33:15,001 esl_sqio_Read(ESL_SQFILE *sqfp, ESL_SQ *sq) 2023-08-20T23:33:15,002 ^ 2023-08-20T23:33:15,002 vendor/easel/esl_sqio.c:356:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,002 vendor/easel/esl_sqio.h:132:14: warning: type of ‘esl_sqio_ReadInfo’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,002 extern int esl_sqio_ReadInfo (ESL_SQFILE *sqfp, ESL_SQ *sq); 2023-08-20T23:33:15,003 ^ 2023-08-20T23:33:15,003 vendor/easel/esl_sqio.c:378:1: note: ‘esl_sqio_ReadInfo’ was previously declared here 2023-08-20T23:33:15,003 esl_sqio_ReadInfo(ESL_SQFILE *sqfp, ESL_SQ *sq) 2023-08-20T23:33:15,004 ^ 2023-08-20T23:33:15,004 vendor/easel/esl_sqio.c:378:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,004 vendor/easel/esl_sqio.h:134:14: warning: type of ‘esl_sqio_ReadSequence’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,004 extern int esl_sqio_ReadSequence(ESL_SQFILE *sqfp, ESL_SQ *sq); 2023-08-20T23:33:15,005 ^ 2023-08-20T23:33:15,005 vendor/easel/esl_sqio.c:399:1: note: ‘esl_sqio_ReadSequence’ was previously declared here 2023-08-20T23:33:15,005 esl_sqio_ReadSequence(ESL_SQFILE *sqfp, ESL_SQ *sq) 2023-08-20T23:33:15,006 ^ 2023-08-20T23:33:15,006 vendor/easel/esl_sqio.c:399:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,006 vendor/easel/esl_msa.h:145:17: warning: type of ‘esl_msa_Digitize’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,006 extern int esl_msa_Digitize(const ESL_ALPHABET *abc, ESL_MSA *msa, char *errmsg); 2023-08-20T23:33:15,007 ^ 2023-08-20T23:33:15,007 vendor/easel/esl_msa.c:875:1: note: ‘esl_msa_Digitize’ was previously declared here 2023-08-20T23:33:15,007 esl_msa_Digitize(const ESL_ALPHABET *abc, ESL_MSA *msa, char *errbuf) 2023-08-20T23:33:15,008 ^ 2023-08-20T23:33:15,008 vendor/easel/esl_msa.c:875:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,008 vendor/easel/esl_msafile.h:119:13: warning: type of ‘esl_msafile_Read’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,009 extern int esl_msafile_Read(ESL_MSAFILE *afp, ESL_MSA **ret_msa); 2023-08-20T23:33:15,009 ^ 2023-08-20T23:33:15,009 vendor/easel/esl_msafile.c:997:1: note: ‘esl_msafile_Read’ was previously declared here 2023-08-20T23:33:15,009 esl_msafile_Read(ESL_MSAFILE *afp, ESL_MSA **ret_msa) 2023-08-20T23:33:15,010 ^ 2023-08-20T23:33:15,010 vendor/easel/esl_msafile.c:997:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,010 vendor/easel/esl_sqio.h:129:13: warning: type of ‘esl_sqfile_GuessAlphabet’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,011 extern int esl_sqfile_GuessAlphabet(ESL_SQFILE *sqfp, int *ret_type); 2023-08-20T23:33:15,011 ^ 2023-08-20T23:33:15,011 vendor/easel/esl_sqio.c:322:1: note: ‘esl_sqfile_GuessAlphabet’ was previously declared here 2023-08-20T23:33:15,011 esl_sqfile_GuessAlphabet(ESL_SQFILE *sqfp, int *ret_type) 2023-08-20T23:33:15,012 ^ 2023-08-20T23:33:15,012 vendor/easel/esl_sqio.c:322:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,012 vendor/easel/esl_sqio.h:141:14: warning: type of ‘esl_sqfile_GetErrorBuf’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,012 const char *esl_sqfile_GetErrorBuf(const ESL_SQFILE *sqfp); 2023-08-20T23:33:15,013 ^ 2023-08-20T23:33:15,013 vendor/easel/esl_sqio.c:660:1: note: ‘esl_sqfile_GetErrorBuf’ was previously declared here 2023-08-20T23:33:15,013 esl_sqfile_GetErrorBuf(const ESL_SQFILE *sqfp) 2023-08-20T23:33:15,014 ^ 2023-08-20T23:33:15,014 vendor/easel/esl_sqio.c:660:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,014 vendor/easel/esl_msa.h:186:12: warning: type of ‘esl_msa_Checksum’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,014 extern int esl_msa_Checksum(const ESL_MSA *msa, uint32_t *ret_checksum); 2023-08-20T23:33:15,015 ^ 2023-08-20T23:33:15,015 vendor/easel/esl_msa.c:2802:1: note: ‘esl_msa_Checksum’ was previously declared here 2023-08-20T23:33:15,015 esl_msa_Checksum(const ESL_MSA *msa, uint32_t *ret_checksum) 2023-08-20T23:33:15,016 ^ 2023-08-20T23:33:15,016 vendor/easel/esl_msa.c:2802:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,016 vendor/easel/esl_sq.h:180:16: warning: type of ‘esl_sq_Checksum’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,017 extern int esl_sq_Checksum(const ESL_SQ *sq, uint32_t *ret_checksum); 2023-08-20T23:33:15,017 ^ 2023-08-20T23:33:15,017 vendor/easel/esl_sq.c:1631:1: note: ‘esl_sq_Checksum’ was previously declared here 2023-08-20T23:33:15,017 esl_sq_Checksum(const ESL_SQ *sq, uint32_t *ret_checksum) 2023-08-20T23:33:15,018 ^ 2023-08-20T23:33:15,018 vendor/easel/esl_sq.c:1631:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,018 vendor/easel/esl_msa.h:146:17: warning: type of ‘esl_msa_Textize’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,019 extern int esl_msa_Textize(ESL_MSA *msa); 2023-08-20T23:33:15,019 ^ 2023-08-20T23:33:15,019 vendor/easel/esl_msa.c:935:1: note: ‘esl_msa_Textize’ was previously declared here 2023-08-20T23:33:15,019 esl_msa_Textize(ESL_MSA *msa) 2023-08-20T23:33:15,020 ^ 2023-08-20T23:33:15,020 vendor/easel/esl_msa.c:935:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,020 vendor/easel/esl_msa.h:139:17: warning: type of ‘esl_msa_Clone’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,020 extern ESL_MSA *esl_msa_Clone(const ESL_MSA *msa); 2023-08-20T23:33:15,021 ^ 2023-08-20T23:33:15,021 vendor/easel/esl_msa.c:407:1: note: ‘esl_msa_Clone’ was previously declared here 2023-08-20T23:33:15,021 esl_msa_Clone(const ESL_MSA *msa) 2023-08-20T23:33:15,022 ^ 2023-08-20T23:33:15,022 vendor/easel/esl_msa.c:407:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,022 vendor/easel/esl_sq.h:183:16: warning: type of ‘esl_sq_CreateDigital’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,022 extern ESL_SQ *esl_sq_CreateDigital(const ESL_ALPHABET *abc); 2023-08-20T23:33:15,023 ^ 2023-08-20T23:33:15,023 vendor/easel/esl_sq.c:730:1: note: ‘esl_sq_CreateDigital’ was previously declared here 2023-08-20T23:33:15,023 esl_sq_CreateDigital(const ESL_ALPHABET *abc) 2023-08-20T23:33:15,024 ^ 2023-08-20T23:33:15,024 vendor/easel/esl_sq.c:730:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,024 vendor/easel/esl_msa.h:192:12: warning: type of ‘esl_msa_Hash’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,025 extern int esl_msa_Hash(ESL_MSA *msa); 2023-08-20T23:33:15,025 ^ 2023-08-20T23:33:15,025 vendor/easel/esl_msa.c:3050:1: note: ‘esl_msa_Hash’ was previously declared here 2023-08-20T23:33:15,025 esl_msa_Hash(ESL_MSA *msa) 2023-08-20T23:33:15,026 ^ 2023-08-20T23:33:15,026 vendor/easel/esl_msa.c:3050:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,026 vendor/easel/esl_msa.h:154:12: warning: type of ‘esl_msa_SetSeqName’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,027 extern int esl_msa_SetSeqName (ESL_MSA *msa, int idx, const char *s, esl_pos_t n); 2023-08-20T23:33:15,027 ^ 2023-08-20T23:33:15,027 vendor/easel/esl_msa.c:1147:1: note: ‘esl_msa_SetSeqName’ was previously declared here 2023-08-20T23:33:15,027 esl_msa_SetSeqName(ESL_MSA *msa, int idx, const char *s, esl_pos_t n) 2023-08-20T23:33:15,028 ^ 2023-08-20T23:33:15,028 vendor/easel/esl_msa.c:1147:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,028 vendor/easel/esl_msa.h:155:12: warning: type of ‘esl_msa_SetSeqAccession’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,029 extern int esl_msa_SetSeqAccession (ESL_MSA *msa, int idx, const char *s, esl_pos_t n); 2023-08-20T23:33:15,029 ^ 2023-08-20T23:33:15,029 vendor/easel/esl_msa.c:1178:1: note: ‘esl_msa_SetSeqAccession’ was previously declared here 2023-08-20T23:33:15,030 esl_msa_SetSeqAccession(ESL_MSA *msa, int idx, const char *s, esl_pos_t n) 2023-08-20T23:33:15,030 ^ 2023-08-20T23:33:15,030 vendor/easel/esl_msa.c:1178:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,030 vendor/easel/esl_msa.h:156:12: warning: type of ‘esl_msa_SetSeqDescription’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,031 extern int esl_msa_SetSeqDescription(ESL_MSA *msa, int idx, const char *s, esl_pos_t n); 2023-08-20T23:33:15,031 ^ 2023-08-20T23:33:15,031 vendor/easel/esl_msa.c:1230:1: note: ‘esl_msa_SetSeqDescription’ was previously declared here 2023-08-20T23:33:15,032 esl_msa_SetSeqDescription(ESL_MSA *msa, int idx, const char *s, esl_pos_t n) 2023-08-20T23:33:15,032 ^ 2023-08-20T23:33:15,032 vendor/easel/esl_msa.c:1230:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,032 vendor/easel/esl_msa.h:144:17: warning: type of ‘esl_msa_CreateDigital’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,033 extern ESL_MSA *esl_msa_CreateDigital(const ESL_ALPHABET *abc, int nseq, int64_t alen); 2023-08-20T23:33:15,033 ^ 2023-08-20T23:33:15,033 vendor/easel/esl_msa.c:811:1: note: ‘esl_msa_CreateDigital’ was previously declared here 2023-08-20T23:33:15,034 esl_msa_CreateDigital(const ESL_ALPHABET *abc, int nseq, int64_t alen) 2023-08-20T23:33:15,034 ^ 2023-08-20T23:33:15,034 vendor/easel/esl_msa.c:811:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,034 vendor/easel/esl_sq.h:157:16: warning: type of ‘esl_sq_CreateFrom’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,035 extern ESL_SQ *esl_sq_CreateFrom(const char *name, const char *seq, 2023-08-20T23:33:15,035 ^ 2023-08-20T23:33:15,035 vendor/easel/esl_sq.c:93:1: note: ‘esl_sq_CreateFrom’ was previously declared here 2023-08-20T23:33:15,036 esl_sq_CreateFrom(const char *name, const char *seq, const char *desc, const char *acc, const char *ss) 2023-08-20T23:33:15,036 ^ 2023-08-20T23:33:15,036 vendor/easel/esl_sq.c:93:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,036 vendor/easel/esl_sq.h:156:16: warning: type of ‘esl_sq_Create’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,037 extern ESL_SQ *esl_sq_Create(void); 2023-08-20T23:33:15,037 ^ 2023-08-20T23:33:15,037 vendor/easel/esl_sq.c:58:1: note: ‘esl_sq_Create’ was previously declared here 2023-08-20T23:33:15,038 esl_sq_Create(void) 2023-08-20T23:33:15,038 ^ 2023-08-20T23:33:15,038 vendor/easel/esl_sq.c:58:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,038 vendor/easel/esl_sq.h:179:16: warning: type of ‘esl_sq_ReverseComplement’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,039 extern int esl_sq_ReverseComplement(ESL_SQ *sq); 2023-08-20T23:33:15,039 ^ 2023-08-20T23:33:15,040 vendor/easel/esl_sq.c:1536:1: note: ‘esl_sq_ReverseComplement’ was previously declared here 2023-08-20T23:33:15,041 esl_sq_ReverseComplement(ESL_SQ *sq) 2023-08-20T23:33:15,042 ^ 2023-08-20T23:33:15,042 vendor/easel/esl_sq.c:1536:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,043 vendor/easel/esl_sq.h:162:16: warning: type of ‘esl_sq_Compare’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,043 extern int esl_sq_Compare (ESL_SQ *sq1, ESL_SQ *sq2); 2023-08-20T23:33:15,043 ^ 2023-08-20T23:33:15,044 vendor/easel/esl_sq.c:373:1: note: ‘esl_sq_Compare’ was previously declared here 2023-08-20T23:33:15,045 esl_sq_Compare(ESL_SQ *sq1, ESL_SQ *sq2) 2023-08-20T23:33:15,045 ^ 2023-08-20T23:33:15,045 vendor/easel/esl_sq.c:373:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,046 vendor/easel/esl_sq.h:160:16: warning: type of ‘esl_sq_GrowTo’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,046 extern int esl_sq_GrowTo(ESL_SQ *sq, int64_t n); 2023-08-20T23:33:15,046 ^ 2023-08-20T23:33:15,046 vendor/easel/esl_sq.c:209:1: note: ‘esl_sq_GrowTo’ was previously declared here 2023-08-20T23:33:15,047 esl_sq_GrowTo(ESL_SQ *sq, int64_t n) 2023-08-20T23:33:15,047 ^ 2023-08-20T23:33:15,047 vendor/easel/esl_sq.c:209:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,048 vendor/easel/esl_ssi.h:111:13: warning: type of ‘esl_ssi_Open’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,048 extern int esl_ssi_Open(const char *filename, ESL_SSI **ret_ssi); 2023-08-20T23:33:15,048 ^ 2023-08-20T23:33:15,049 vendor/easel/esl_ssi.c:51:1: note: ‘esl_ssi_Open’ was previously declared here 2023-08-20T23:33:15,049 esl_ssi_Open(const char *filename, ESL_SSI **ret_ssi) 2023-08-20T23:33:15,049 ^ 2023-08-20T23:33:15,049 vendor/easel/esl_ssi.c:51:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,050 vendor/easel/esl_ssi.h:127:13: warning: type of ‘esl_newssi_AddKey’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,050 extern int esl_newssi_AddKey (ESL_NEWSSI *ns, const char *key, uint16_t fh, off_t r_off, off_t d_off, int64_t L); 2023-08-20T23:33:15,050 ^ 2023-08-20T23:33:15,051 vendor/easel/esl_ssi.c:843:1: note: type mismatch in parameter 4 2023-08-20T23:33:15,051 esl_newssi_AddKey(ESL_NEWSSI *ns, const char *key, uint16_t fh, 2023-08-20T23:33:15,051 ^ 2023-08-20T23:33:15,052 vendor/easel/esl_ssi.c:843:1: note: ‘esl_newssi_AddKey’ was previously declared here 2023-08-20T23:33:15,052 vendor/easel/esl_ssi.c:843:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,052 vendor/easel/esl_sq.h:163:16: warning: type of ‘esl_sq_Reuse’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,052 extern int esl_sq_Reuse (ESL_SQ *sq); 2023-08-20T23:33:15,053 ^ 2023-08-20T23:33:15,053 vendor/easel/esl_sq.c:443:1: note: ‘esl_sq_Reuse’ was previously declared here 2023-08-20T23:33:15,053 esl_sq_Reuse(ESL_SQ *sq) 2023-08-20T23:33:15,054 ^ 2023-08-20T23:33:15,054 vendor/easel/esl_sq.c:443:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,054 vendor/easel/esl_sqio.h:146:14: warning: type of ‘esl_sqfile_Position’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,055 extern int esl_sqfile_Position(ESL_SQFILE *sqfp, off_t offset); 2023-08-20T23:33:15,055 ^ 2023-08-20T23:33:15,056 vendor/easel/esl_sqio.c:787:1: note: type mismatch in parameter 2 2023-08-20T23:33:15,056 esl_sqfile_Position(ESL_SQFILE *sqfp, off_t offset) 2023-08-20T23:33:15,056 ^ 2023-08-20T23:33:15,057 vendor/easel/esl_sqio.c:787:1: note: ‘esl_sqfile_Position’ was previously declared here 2023-08-20T23:33:15,057 vendor/easel/esl_sqio.c:787:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,058 vendor/easel/esl_ssi.h:119:13: warning: type of ‘esl_ssi_FileInfo’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,058 extern int esl_ssi_FileInfo(ESL_SSI *ssi, uint16_t fh, char **ret_filename, int *ret_format); 2023-08-20T23:33:15,058 ^ 2023-08-20T23:33:15,059 vendor/easel/esl_ssi.c:486:1: note: ‘esl_ssi_FileInfo’ was previously declared here 2023-08-20T23:33:15,059 esl_ssi_FileInfo(ESL_SSI *ssi, uint16_t fh, char **ret_filename, int *ret_format) 2023-08-20T23:33:15,059 ^ 2023-08-20T23:33:15,060 vendor/easel/esl_ssi.c:486:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,060 vendor/easel/esl_ssi.h:113:13: warning: type of ‘esl_ssi_FindName’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,060 extern int esl_ssi_FindName(ESL_SSI *ssi, const char *key, 2023-08-20T23:33:15,060 ^ 2023-08-20T23:33:15,061 vendor/easel/esl_ssi.c:172:1: note: ‘esl_ssi_FindName’ was previously declared here 2023-08-20T23:33:15,061 esl_ssi_FindName(ESL_SSI *ssi, const char *key, uint16_t *ret_fh, off_t *ret_roff, off_t *opt_doff, int64_t *opt_L) 2023-08-20T23:33:15,061 ^ 2023-08-20T23:33:15,062 vendor/easel/esl_ssi.c:172:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,062 vendor/easel/esl_sq.h:161:16: warning: type of ‘esl_sq_Copy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,062 extern int esl_sq_Copy(const ESL_SQ *src, ESL_SQ *dst); 2023-08-20T23:33:15,063 ^ 2023-08-20T23:33:15,063 vendor/easel/esl_sq.c:265:1: note: ‘esl_sq_Copy’ was previously declared here 2023-08-20T23:33:15,063 esl_sq_Copy(const ESL_SQ *src, ESL_SQ *dst) 2023-08-20T23:33:15,063 ^ 2023-08-20T23:33:15,064 vendor/easel/esl_sq.c:265:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,064 vendor/easel/esl_sqio.h:125:13: warning: type of ‘esl_sqfile_Close’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,064 extern void esl_sqfile_Close(ESL_SQFILE *sqfp); 2023-08-20T23:33:15,065 ^ 2023-08-20T23:33:15,065 vendor/easel/esl_sqio.c:99:1: note: ‘esl_sqfile_Close’ was previously declared here 2023-08-20T23:33:15,065 esl_sqfile_Close(ESL_SQFILE *sqfp) 2023-08-20T23:33:15,066 ^ 2023-08-20T23:33:15,066 vendor/easel/esl_sqio.c:99:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,066 vendor/easel/esl_ssi.h:112:13: warning: type of ‘esl_ssi_Close’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,067 extern void esl_ssi_Close(ESL_SSI *ssi); 2023-08-20T23:33:15,067 ^ 2023-08-20T23:33:15,067 vendor/easel/esl_ssi.c:510:1: note: ‘esl_ssi_Close’ was previously declared here 2023-08-20T23:33:15,068 esl_ssi_Close(ESL_SSI *ssi) 2023-08-20T23:33:15,068 ^ 2023-08-20T23:33:15,068 vendor/easel/esl_ssi.c:510:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,068 pyhmmer/reexports/esl_sqio_ascii.h:31:13: warning: type of ‘sqascii_GetError’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,069 const char *sqascii_GetError (const ESL_SQFILE *sqfp); 2023-08-20T23:33:15,069 ^ 2023-08-20T23:33:15,069 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:712:1: note: ‘sqascii_GetError’ was previously declared here 2023-08-20T23:33:15,070 sqascii_GetError(const ESL_SQFILE *sqfp) 2023-08-20T23:33:15,070 ^ 2023-08-20T23:33:15,070 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:712:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,071 pyhmmer/reexports/esl_sqio_ascii.h:38:7: warning: type of ‘sqascii_FetchSubseq’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,071 int sqascii_FetchSubseq (ESL_SQFILE *sqfp, const char *source, int64_t start, int64_t end, ESL_SQ *sq); 2023-08-20T23:33:15,071 ^ 2023-08-20T23:33:15,071 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1949:1: note: ‘sqascii_FetchSubseq’ was previously declared here 2023-08-20T23:33:15,072 sqascii_FetchSubseq(ESL_SQFILE *sqfp, const char *source, int64_t start, int64_t end, ESL_SQ *sq) 2023-08-20T23:33:15,072 ^ 2023-08-20T23:33:15,072 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1949:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,073 pyhmmer/reexports/esl_sqio_ascii.h:37:7: warning: type of ‘sqascii_FetchInfo’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,073 int sqascii_FetchInfo (ESL_SQFILE *sqfp, const char *key, ESL_SQ *sq); 2023-08-20T23:33:15,073 ^ 2023-08-20T23:33:15,074 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1905:1: note: ‘sqascii_FetchInfo’ was previously declared here 2023-08-20T23:33:15,074 sqascii_FetchInfo(ESL_SQFILE *sqfp, const char *key, ESL_SQ *sq) 2023-08-20T23:33:15,074 ^ 2023-08-20T23:33:15,075 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1905:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,075 pyhmmer/reexports/esl_sqio_ascii.h:36:7: warning: type of ‘sqascii_Fetch’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,075 int sqascii_Fetch (ESL_SQFILE *sqfp, const char *key, ESL_SQ *sq); 2023-08-20T23:33:15,076 ^ 2023-08-20T23:33:15,076 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1874:1: note: ‘sqascii_Fetch’ was previously declared here 2023-08-20T23:33:15,076 sqascii_Fetch(ESL_SQFILE *sqfp, const char *key, ESL_SQ *sq) 2023-08-20T23:33:15,077 ^ 2023-08-20T23:33:15,077 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1874:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,077 pyhmmer/reexports/esl_sqio_ascii.h:35:7: warning: type of ‘sqascii_PositionByNumber’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,077 int sqascii_PositionByNumber(ESL_SQFILE *sqfp, int which); 2023-08-20T23:33:15,078 ^ 2023-08-20T23:33:15,078 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1842:1: note: ‘sqascii_PositionByNumber’ was previously declared here 2023-08-20T23:33:15,078 sqascii_PositionByNumber(ESL_SQFILE *sqfp, int which) 2023-08-20T23:33:15,079 ^ 2023-08-20T23:33:15,079 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1842:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,079 pyhmmer/reexports/esl_sqio_ascii.h:34:7: warning: type of ‘sqascii_PositionByKey’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,080 int sqascii_PositionByKey (ESL_SQFILE *sqfp, const char *key); 2023-08-20T23:33:15,080 ^ 2023-08-20T23:33:15,080 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1794:1: note: ‘sqascii_PositionByKey’ was previously declared here 2023-08-20T23:33:15,081 sqascii_PositionByKey(ESL_SQFILE *sqfp, const char *key) 2023-08-20T23:33:15,081 ^ 2023-08-20T23:33:15,082 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1794:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,082 pyhmmer/reexports/esl_sqio_ascii.h:33:7: warning: type of ‘sqascii_OpenSSI’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,083 int sqascii_OpenSSI (ESL_SQFILE *sqfp, const char *ssifile_hint); 2023-08-20T23:33:15,083 ^ 2023-08-20T23:33:15,083 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1737:1: note: ‘sqascii_OpenSSI’ was previously declared here 2023-08-20T23:33:15,084 sqascii_OpenSSI(ESL_SQFILE *sqfp, const char *ssifile_hint) 2023-08-20T23:33:15,084 ^ 2023-08-20T23:33:15,084 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1737:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,085 pyhmmer/reexports/esl_sqio_ascii.h:27:7: warning: type of ‘sqascii_ReadBlock’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,085 int sqascii_ReadBlock (ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int max_sequences, int max_init_window, int long_target); 2023-08-20T23:33:15,085 ^ 2023-08-20T23:33:15,086 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1456:1: note: ‘sqascii_ReadBlock’ was previously declared here 2023-08-20T23:33:15,086 sqascii_ReadBlock(ESL_SQFILE *sqfp, ESL_SQ_BLOCK *sqBlock, int max_residues, int max_sequences, int max_init_window, int long_target) 2023-08-20T23:33:15,086 ^ 2023-08-20T23:33:15,087 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1456:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,087 pyhmmer/reexports/esl_sqio_ascii.h:28:7: warning: type of ‘sqascii_Echo’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,087 int sqascii_Echo (ESL_SQFILE *sqfp, const ESL_SQ *sq, FILE *ofp); 2023-08-20T23:33:15,088 ^ 2023-08-20T23:33:15,088 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1639:1: note: ‘sqascii_Echo’ was previously declared here 2023-08-20T23:33:15,088 sqascii_Echo(ESL_SQFILE *sqfp, const ESL_SQ *sq, FILE *ofp) 2023-08-20T23:33:15,088 ^ 2023-08-20T23:33:15,089 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1639:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,089 pyhmmer/reexports/esl_sqio_ascii.h:26:7: warning: type of ‘sqascii_ReadWindow’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,089 int sqascii_ReadWindow (ESL_SQFILE *sqfp, int C, int W, ESL_SQ *sq); 2023-08-20T23:33:15,090 ^ 2023-08-20T23:33:15,090 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1115:1: note: ‘sqascii_ReadWindow’ was previously declared here 2023-08-20T23:33:15,090 sqascii_ReadWindow(ESL_SQFILE *sqfp, int C, int W, ESL_SQ *sq) 2023-08-20T23:33:15,091 ^ 2023-08-20T23:33:15,091 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1115:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,091 pyhmmer/reexports/esl_sqio_ascii.h:25:7: warning: type of ‘sqascii_ReadSequence’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,092 int sqascii_ReadSequence (ESL_SQFILE *sqfp, ESL_SQ *sq); 2023-08-20T23:33:15,092 ^ 2023-08-20T23:33:15,092 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:942:1: note: ‘sqascii_ReadSequence’ was previously declared here 2023-08-20T23:33:15,092 sqascii_ReadSequence(ESL_SQFILE *sqfp, ESL_SQ *sq) 2023-08-20T23:33:15,093 ^ 2023-08-20T23:33:15,093 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:942:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,093 pyhmmer/reexports/esl_sqio_ascii.h:24:7: warning: type of ‘sqascii_ReadInfo’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,094 int sqascii_ReadInfo (ESL_SQFILE *sqfp, ESL_SQ *sq); 2023-08-20T23:33:15,094 ^ 2023-08-20T23:33:15,094 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:838:1: note: ‘sqascii_ReadInfo’ was previously declared here 2023-08-20T23:33:15,094 sqascii_ReadInfo(ESL_SQFILE *sqfp, ESL_SQ *sq) 2023-08-20T23:33:15,095 ^ 2023-08-20T23:33:15,095 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:838:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,096 pyhmmer/reexports/esl_sqio_ascii.h:23:7: warning: type of ‘sqascii_Read’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,096 int sqascii_Read (ESL_SQFILE *sqfp, ESL_SQ *sq); 2023-08-20T23:33:15,096 ^ 2023-08-20T23:33:15,096 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:743:1: note: ‘sqascii_Read’ was previously declared here 2023-08-20T23:33:15,097 sqascii_Read(ESL_SQFILE *sqfp, ESL_SQ *sq) 2023-08-20T23:33:15,097 ^ 2023-08-20T23:33:15,097 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:743:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,098 pyhmmer/reexports/esl_sqio_ascii.h:30:7: warning: type of ‘sqascii_IsRewindable’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,098 int sqascii_IsRewindable (const ESL_SQFILE *sqfp); 2023-08-20T23:33:15,098 ^ 2023-08-20T23:33:15,099 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:697:1: note: ‘sqascii_IsRewindable’ was previously declared here 2023-08-20T23:33:15,099 sqascii_IsRewindable(const ESL_SQFILE *sqfp) 2023-08-20T23:33:15,099 ^ 2023-08-20T23:33:15,099 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:697:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,100 pyhmmer/reexports/esl_sqio_ascii.h:22:7: warning: type of ‘sqascii_GuessAlphabet’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,100 int sqascii_GuessAlphabet (ESL_SQFILE *sqfp, int *ret_type); 2023-08-20T23:33:15,101 ^ 2023-08-20T23:33:15,101 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:646:1: note: ‘sqascii_GuessAlphabet’ was previously declared here 2023-08-20T23:33:15,101 sqascii_GuessAlphabet(ESL_SQFILE *sqfp, int *ret_type) 2023-08-20T23:33:15,101 ^ 2023-08-20T23:33:15,102 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:646:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,102 pyhmmer/reexports/esl_sqio_ascii.h:21:7: warning: type of ‘sqascii_SetDigital’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,102 int sqascii_SetDigital (ESL_SQFILE *sqfp, const ESL_ALPHABET *abc); 2023-08-20T23:33:15,103 ^ 2023-08-20T23:33:15,103 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:591:1: note: ‘sqascii_SetDigital’ was previously declared here 2023-08-20T23:33:15,103 sqascii_SetDigital(ESL_SQFILE *sqfp, const ESL_ALPHABET *abc) 2023-08-20T23:33:15,103 ^ 2023-08-20T23:33:15,104 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:591:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,104 pyhmmer/reexports/esl_sqio_ascii.h:20:7: warning: type of ‘sqascii_Close’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,104 void sqascii_Close (ESL_SQFILE *sqfp); 2023-08-20T23:33:15,105 ^ 2023-08-20T23:33:15,105 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:531:1: note: ‘sqascii_Close’ was previously declared here 2023-08-20T23:33:15,105 sqascii_Close(ESL_SQFILE *sqfp) 2023-08-20T23:33:15,106 ^ 2023-08-20T23:33:15,106 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:531:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,106 pyhmmer/reexports/esl_sqio_ascii.h:19:7: warning: type of ‘sqascii_Position’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:33:15,107 int sqascii_Position (ESL_SQFILE *sqfp, off_t offset); 2023-08-20T23:33:15,107 ^ 2023-08-20T23:33:15,107 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:475:1: note: type mismatch in parameter 2 2023-08-20T23:33:15,108 sqascii_Position(ESL_SQFILE *sqfp, off_t offset) 2023-08-20T23:33:15,108 ^ 2023-08-20T23:33:15,109 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:475:1: note: ‘sqascii_Position’ was previously declared here 2023-08-20T23:33:15,110 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:475:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:33:15,110 building 'pyhmmer.plan7' extension 2023-08-20T23:33:15,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_NEON=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-armv7l-cpython-37 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ivendor/easel -I/usr/include/python3.7m -c pyhmmer/plan7.c -o build/temp.linux-armv7l-cpython-37/pyhmmer/plan7.o -mfpu=neon -Wno-unused-variable 2023-08-20T23:33:16,546 In file included from pyhmmer/plan7.c:1138: 2023-08-20T23:33:16,547 pyhmmer/fileobj/linux.h: In function ‘fileobj_linux_read’: 2023-08-20T23:33:16,547 pyhmmer/fileobj/linux.h:48:13: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:33:16,547 if (len > size) { 2023-08-20T23:33:16,548 ^ 2023-08-20T23:33:23,680 pyhmmer/plan7.c: In function ‘__pyx_f_7pyhmmer_5plan7_21OptimizedProfileBlock__allocate’: 2023-08-20T23:33:23,700 pyhmmer/plan7.c:83965:66: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:33:23,700 for (__pyx_t_10 = __pyx_v_self->_block->listSize; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-08-20T23:33:23,701 ^ 2023-08-20T23:33:25,615 pyhmmer/plan7.c: In function ‘__pyx_fuse_1__pyx_f_7pyhmmer_5plan7_8Pipeline_search_hmm’: 2023-08-20T23:33:25,637 pyhmmer/plan7.c:97228:27: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-08-20T23:33:25,638 __pyx_t_7 = (__pyx_t_10 > __pyx_v_7pyhmmer_5plan7_HMMER_TARGET_LIMIT); 2023-08-20T23:33:25,638 ^ 2023-08-20T23:45:24,068 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-cpython-37/pyhmmer/plan7.o build/temp.linux-armv7l-cpython-37/libhmmer.a build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/libdivsufsort.a -Lbuild/temp.linux-armv7l-cpython-37 -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-37 -lhmmer -leasel -ldivsufsort -ldivsufsort -leasel -lhmmer -o build/lib.linux-armv7l-cpython-37/pyhmmer/plan7.cpython-37m-arm-linux-gnueabihf.so -mfpu=neon 2023-08-20T23:58:52,129 vendor/hmmer/src/hmmer.h:1590:16: warning: type of ‘p7_hmm_Compare’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,130 extern int p7_hmm_Compare(P7_HMM *h1, P7_HMM *h2, float tol); 2023-08-20T23:58:52,131 ^ 2023-08-20T23:58:52,131 vendor/hmmer/src/p7_hmm.c:1184:1: note: ‘p7_hmm_Compare’ was previously declared here 2023-08-20T23:58:52,131 p7_hmm_Compare(P7_HMM *h1, P7_HMM *h2, float tol) 2023-08-20T23:58:52,132 ^ 2023-08-20T23:58:52,132 vendor/hmmer/src/p7_hmm.c:1184:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,132 vendor/hmmer/src/hmmer.h:1572:16: warning: type of ‘p7_hmm_SetName’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,133 extern int p7_hmm_SetName (P7_HMM *hmm, char *name); 2023-08-20T23:58:52,133 ^ 2023-08-20T23:58:52,133 vendor/hmmer/src/p7_hmm.c:404:1: note: ‘p7_hmm_SetName’ was previously declared here 2023-08-20T23:58:52,133 p7_hmm_SetName(P7_HMM *hmm, char *name) 2023-08-20T23:58:52,134 ^ 2023-08-20T23:58:52,134 vendor/hmmer/src/p7_hmm.c:404:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,134 vendor/hmmer/src/hmmer.h:1573:16: warning: type of ‘p7_hmm_SetAccession’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,135 extern int p7_hmm_SetAccession (P7_HMM *hmm, char *acc); 2023-08-20T23:58:52,135 ^ 2023-08-20T23:58:52,135 vendor/hmmer/src/p7_hmm.c:441:1: note: ‘p7_hmm_SetAccession’ was previously declared here 2023-08-20T23:58:52,136 p7_hmm_SetAccession(P7_HMM *hmm, char *acc) 2023-08-20T23:58:52,136 ^ 2023-08-20T23:58:52,136 vendor/hmmer/src/p7_hmm.c:441:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,137 vendor/hmmer/src/hmmer.h:1574:16: warning: type of ‘p7_hmm_SetDescription’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,137 extern int p7_hmm_SetDescription(P7_HMM *hmm, char *desc); 2023-08-20T23:58:52,137 ^ 2023-08-20T23:58:52,138 vendor/hmmer/src/p7_hmm.c:471:1: note: ‘p7_hmm_SetDescription’ was previously declared here 2023-08-20T23:58:52,138 p7_hmm_SetDescription(P7_HMM *hmm, char *desc) 2023-08-20T23:58:52,138 ^ 2023-08-20T23:58:52,138 vendor/hmmer/src/p7_hmm.c:471:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,139 vendor/hmmer/src/impl_neon/impl_neon.h:290:21: warning: type of ‘p7_oprofile_Compare’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,139 extern int p7_oprofile_Compare(const P7_OPROFILE *om1, const P7_OPROFILE *om2, float tol, char *errmsg); 2023-08-20T23:58:52,139 ^ 2023-08-20T23:58:52,140 vendor/hmmer/src/impl_neon/p7_oprofile.c:1806:1: note: ‘p7_oprofile_Compare’ was previously declared here 2023-08-20T23:58:52,140 p7_oprofile_Compare(const P7_OPROFILE *om1, const P7_OPROFILE *om2, float tol, char *errmsg) 2023-08-20T23:58:52,140 ^ 2023-08-20T23:58:52,141 vendor/hmmer/src/impl_neon/p7_oprofile.c:1806:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,141 vendor/hmmer/src/impl_neon/impl_neon.h:270:21: warning: type of ‘p7_oprofile_IsLocal’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,141 extern int p7_oprofile_IsLocal(const P7_OPROFILE *om); 2023-08-20T23:58:52,141 ^ 2023-08-20T23:58:52,142 vendor/hmmer/src/impl_neon/p7_oprofile.c:161:1: note: ‘p7_oprofile_IsLocal’ was previously declared here 2023-08-20T23:58:52,142 p7_oprofile_IsLocal(const P7_OPROFILE *om) 2023-08-20T23:58:52,142 ^ 2023-08-20T23:58:52,143 vendor/hmmer/src/impl_neon/p7_oprofile.c:161:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,143 vendor/hmmer/src/hmmer.h:1681:20: warning: type of ‘p7_profile_Compare’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,143 extern int p7_profile_Compare(P7_PROFILE *gm1, P7_PROFILE *gm2, float tol); 2023-08-20T23:58:52,143 ^ 2023-08-20T23:58:52,144 vendor/hmmer/src/p7_profile.c:552:1: note: ‘p7_profile_Compare’ was previously declared here 2023-08-20T23:58:52,144 p7_profile_Compare(P7_PROFILE *gm1, P7_PROFILE *gm2, float tol) 2023-08-20T23:58:52,144 ^ 2023-08-20T23:58:52,145 vendor/hmmer/src/p7_profile.c:552:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,145 vendor/hmmer/src/hmmer.h:1426:12: warning: type of ‘p7_ReconfigLength’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,145 extern int p7_ReconfigLength (P7_PROFILE *gm, int L); 2023-08-20T23:58:52,146 ^ 2023-08-20T23:58:52,146 vendor/hmmer/src/modelconfig.c:221:1: note: ‘p7_ReconfigLength’ was previously declared here 2023-08-20T23:58:52,146 p7_ReconfigLength(P7_PROFILE *gm, int L) 2023-08-20T23:58:52,146 ^ 2023-08-20T23:58:52,147 vendor/hmmer/src/modelconfig.c:221:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,147 vendor/hmmer/src/hmmer.h:1676:20: warning: type of ‘p7_profile_IsLocal’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,147 extern int p7_profile_IsLocal(const P7_PROFILE *gm); 2023-08-20T23:58:52,148 ^ 2023-08-20T23:58:52,148 vendor/hmmer/src/p7_profile.c:335:1: note: ‘p7_profile_IsLocal’ was previously declared here 2023-08-20T23:58:52,148 p7_profile_IsLocal(const P7_PROFILE *gm) 2023-08-20T23:58:52,148 ^ 2023-08-20T23:58:52,149 vendor/hmmer/src/p7_profile.c:335:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,149 vendor/hmmer/src/hmmer.h:1677:20: warning: type of ‘p7_profile_IsMultihit’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,149 extern int p7_profile_IsMultihit(const P7_PROFILE *gm); 2023-08-20T23:58:52,150 ^ 2023-08-20T23:58:52,150 vendor/hmmer/src/p7_profile.c:347:1: note: ‘p7_profile_IsMultihit’ was previously declared here 2023-08-20T23:58:52,150 p7_profile_IsMultihit(const P7_PROFILE *gm) 2023-08-20T23:58:52,150 ^ 2023-08-20T23:58:52,151 vendor/hmmer/src/p7_profile.c:347:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,151 vendor/hmmer/src/hmmer.h:1587:16: warning: type of ‘p7_hmm_SampleEnumerable’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,151 extern int p7_hmm_SampleEnumerable(ESL_RANDOMNESS *r, int M, const ESL_ALPHABET *abc, P7_HMM **ret_hmm); 2023-08-20T23:58:52,152 ^ 2023-08-20T23:58:52,152 vendor/hmmer/src/p7_hmm.c:1051:1: note: ‘p7_hmm_SampleEnumerable’ was previously declared here 2023-08-20T23:58:52,152 p7_hmm_SampleEnumerable(ESL_RANDOMNESS *r, int M, const ESL_ALPHABET *abc, P7_HMM **ret_hmm) 2023-08-20T23:58:52,153 ^ 2023-08-20T23:58:52,153 vendor/hmmer/src/p7_hmm.c:1051:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,153 vendor/hmmer/src/hmmer.h:1586:16: warning: type of ‘p7_hmm_SampleUngapped’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,153 extern int p7_hmm_SampleUngapped (ESL_RANDOMNESS *r, int M, const ESL_ALPHABET *abc, P7_HMM **ret_hmm); 2023-08-20T23:58:52,154 ^ 2023-08-20T23:58:52,154 vendor/hmmer/src/p7_hmm.c:1004:1: note: ‘p7_hmm_SampleUngapped’ was previously declared here 2023-08-20T23:58:52,154 p7_hmm_SampleUngapped(ESL_RANDOMNESS *r, int M, const ESL_ALPHABET *abc, P7_HMM **ret_hmm) 2023-08-20T23:58:52,155 ^ 2023-08-20T23:58:52,155 vendor/hmmer/src/p7_hmm.c:1004:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,155 vendor/hmmer/src/hmmer.h:1585:16: warning: type of ‘p7_hmm_Sample’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,156 extern int p7_hmm_Sample (ESL_RANDOMNESS *r, int M, const ESL_ALPHABET *abc, P7_HMM **ret_hmm); 2023-08-20T23:58:52,156 ^ 2023-08-20T23:58:52,156 vendor/hmmer/src/p7_hmm.c:944:1: note: ‘p7_hmm_Sample’ was previously declared here 2023-08-20T23:58:52,156 p7_hmm_Sample(ESL_RANDOMNESS *r, int M, const ESL_ALPHABET *abc, P7_HMM **ret_hmm) 2023-08-20T23:58:52,157 ^ 2023-08-20T23:58:52,157 vendor/hmmer/src/p7_hmm.c:944:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,157 vendor/hmmer/src/impl_neon/impl_neon.h:272:21: warning: type of ‘p7_oprofile_Sizeof’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,158 extern size_t p7_oprofile_Sizeof(P7_OPROFILE *om); 2023-08-20T23:58:52,158 ^ 2023-08-20T23:58:52,158 vendor/hmmer/src/impl_neon/p7_oprofile.c:208:1: note: ‘p7_oprofile_Sizeof’ was previously declared here 2023-08-20T23:58:52,158 p7_oprofile_Sizeof(P7_OPROFILE *om) 2023-08-20T23:58:52,159 ^ 2023-08-20T23:58:52,159 vendor/hmmer/src/impl_neon/p7_oprofile.c:208:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,159 vendor/hmmer/src/hmmer.h:1674:20: warning: type of ‘p7_profile_Sizeof’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,160 extern size_t p7_profile_Sizeof(P7_PROFILE *gm); 2023-08-20T23:58:52,160 ^ 2023-08-20T23:58:52,160 vendor/hmmer/src/p7_profile.c:277:1: note: ‘p7_profile_Sizeof’ was previously declared here 2023-08-20T23:58:52,160 p7_profile_Sizeof(P7_PROFILE *gm) 2023-08-20T23:58:52,161 ^ 2023-08-20T23:58:52,161 vendor/hmmer/src/p7_profile.c:277:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,161 vendor/hmmer/src/hmmer.h:1565:16: warning: type of ‘p7_hmm_Destroy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,162 extern void p7_hmm_Destroy(P7_HMM *hmm); 2023-08-20T23:58:52,162 ^ 2023-08-20T23:58:52,162 vendor/hmmer/src/p7_hmm.c:191:1: note: ‘p7_hmm_Destroy’ was previously declared here 2023-08-20T23:58:52,162 p7_hmm_Destroy(P7_HMM *hmm) 2023-08-20T23:58:52,163 ^ 2023-08-20T23:58:52,163 vendor/hmmer/src/p7_hmm.c:191:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,163 vendor/hmmer/src/hmmer.h:1671:20: warning: type of ‘p7_profile_Copy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,163 extern int p7_profile_Copy(const P7_PROFILE *src, P7_PROFILE *dst); 2023-08-20T23:58:52,164 ^ 2023-08-20T23:58:52,164 vendor/hmmer/src/p7_profile.c:146:1: note: ‘p7_profile_Copy’ was previously declared here 2023-08-20T23:58:52,164 p7_profile_Copy(const P7_PROFILE *src, P7_PROFILE *dst) 2023-08-20T23:58:52,165 ^ 2023-08-20T23:58:52,165 vendor/hmmer/src/p7_profile.c:146:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,165 vendor/hmmer/src/hmmer.h:1620:24: warning: type of ‘p7_hmm_ScoreDataCreate’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,165 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2023-08-20T23:58:52,166 ^ 2023-08-20T23:58:52,166 vendor/hmmer/src/p7_scoredata.c:175:1: note: ‘p7_hmm_ScoreDataCreate’ was previously declared here 2023-08-20T23:58:52,166 p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ) 2023-08-20T23:58:52,167 ^ 2023-08-20T23:58:52,167 vendor/hmmer/src/p7_scoredata.c:175:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,167 vendor/hmmer/src/impl_neon/impl_neon.h:310:12: warning: type of ‘p7_oprofile_Write’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,168 extern int p7_oprofile_Write(FILE *ffp, FILE *pfp, P7_OPROFILE *om); 2023-08-20T23:58:52,168 ^ 2023-08-20T23:58:52,168 vendor/hmmer/src/impl_neon/io.c:86:1: note: ‘p7_oprofile_Write’ was previously declared here 2023-08-20T23:58:52,169 p7_oprofile_Write(FILE *ffp, FILE *pfp, P7_OPROFILE *om) 2023-08-20T23:58:52,169 ^ 2023-08-20T23:58:52,169 vendor/hmmer/src/impl_neon/io.c:86:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,169 vendor/hmmer/src/impl_neon/impl_neon.h:273:21: warning: type of ‘p7_oprofile_Copy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,170 extern P7_OPROFILE *p7_oprofile_Copy(P7_OPROFILE *om); 2023-08-20T23:58:52,170 ^ 2023-08-20T23:58:52,170 vendor/hmmer/src/impl_neon/p7_oprofile.c:255:1: note: ‘p7_oprofile_Copy’ was previously declared here 2023-08-20T23:58:52,170 p7_oprofile_Copy(P7_OPROFILE *om1) 2023-08-20T23:58:52,171 ^ 2023-08-20T23:58:52,171 vendor/hmmer/src/impl_neon/p7_oprofile.c:255:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,171 vendor/hmmer/src/hmmer.h:1608:13: warning: type of ‘p7_hmmfile_Read’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,172 extern int p7_hmmfile_Read(P7_HMMFILE *hfp, ESL_ALPHABET **ret_abc, P7_HMM **opt_hmm); 2023-08-20T23:58:52,172 ^ 2023-08-20T23:58:52,172 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1131:1: note: ‘p7_hmmfile_Read’ was previously declared here 2023-08-20T23:58:52,172 p7_hmmfile_Read(P7_HMMFILE *hfp, ESL_ALPHABET **ret_abc, P7_HMM **opt_hmm) 2023-08-20T23:58:52,173 ^ 2023-08-20T23:58:52,173 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1131:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,173 vendor/hmmer/src/hmmer.h:1605:13: warning: type of ‘p7_hmmfile_WriteBinary’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,174 extern int p7_hmmfile_WriteBinary(FILE *fp, int format, P7_HMM *hmm); 2023-08-20T23:58:52,174 ^ 2023-08-20T23:58:52,174 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:981:1: note: ‘p7_hmmfile_WriteBinary’ was previously declared here 2023-08-20T23:58:52,174 p7_hmmfile_WriteBinary(FILE *fp, int format, P7_HMM *hmm) 2023-08-20T23:58:52,175 ^ 2023-08-20T23:58:52,175 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:981:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,175 vendor/hmmer/src/hmmer.h:1606:13: warning: type of ‘p7_hmmfile_WriteASCII’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,176 extern int p7_hmmfile_WriteASCII (FILE *fp, int format, P7_HMM *hmm); 2023-08-20T23:58:52,176 ^ 2023-08-20T23:58:52,176 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:513:1: note: ‘p7_hmmfile_WriteASCII’ was previously declared here 2023-08-20T23:58:52,177 p7_hmmfile_WriteASCII(FILE *fp, int format, P7_HMM *hmm) 2023-08-20T23:58:52,177 ^ 2023-08-20T23:58:52,177 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:513:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,177 vendor/hmmer/src/hmmer.h:1567:16: warning: type of ‘p7_hmm_Clone’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,178 extern P7_HMM *p7_hmm_Clone(const P7_HMM *hmm); 2023-08-20T23:58:52,178 ^ 2023-08-20T23:58:52,178 vendor/hmmer/src/p7_hmm.c:259:1: note: ‘p7_hmm_Clone’ was previously declared here 2023-08-20T23:58:52,179 p7_hmm_Clone(const P7_HMM *hmm) 2023-08-20T23:58:52,179 ^ 2023-08-20T23:58:52,179 vendor/hmmer/src/p7_hmm.c:259:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,179 vendor/hmmer/src/hmmer.h:1514:12: warning: type of ‘p7_Builder’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,180 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2023-08-20T23:58:52,180 ^ 2023-08-20T23:58:52,180 vendor/hmmer/src/p7_builder.c:415:1: note: ‘p7_Builder’ was previously declared here 2023-08-20T23:58:52,181 p7_Builder(P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, 2023-08-20T23:58:52,181 ^ 2023-08-20T23:58:52,181 vendor/hmmer/src/p7_builder.c:415:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,181 vendor/hmmer/src/hmmer.h:1515:12: warning: type of ‘p7_SingleBuilder’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,182 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2023-08-20T23:58:52,182 ^ 2023-08-20T23:58:52,182 vendor/hmmer/src/p7_builder.c:496:1: note: ‘p7_SingleBuilder’ was previously declared here 2023-08-20T23:58:52,182 p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, 2023-08-20T23:58:52,183 ^ 2023-08-20T23:58:52,183 vendor/hmmer/src/p7_builder.c:496:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,183 vendor/hmmer/src/hmmer.h:1591:16: warning: type of ‘p7_hmm_Validate’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,184 extern int p7_hmm_Validate(P7_HMM *hmm, char *errbuf, float tol); 2023-08-20T23:58:52,184 ^ 2023-08-20T23:58:52,184 vendor/hmmer/src/p7_hmm.c:1253:1: note: ‘p7_hmm_Validate’ was previously declared here 2023-08-20T23:58:52,184 p7_hmm_Validate(P7_HMM *hmm, char *errbuf, float tol) 2023-08-20T23:58:52,185 ^ 2023-08-20T23:58:52,185 vendor/hmmer/src/p7_hmm.c:1253:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,185 vendor/hmmer/src/hmmer.h:1728:12: warning: type of ‘p7_tophits_Alignment’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,186 extern int p7_tophits_Alignment(const P7_TOPHITS *th, const ESL_ALPHABET *abc, 2023-08-20T23:58:52,186 ^ 2023-08-20T23:58:52,186 vendor/hmmer/src/p7_tophits.c:1509:1: note: ‘p7_tophits_Alignment’ was previously declared here 2023-08-20T23:58:52,187 p7_tophits_Alignment(const P7_TOPHITS *th, const ESL_ALPHABET *abc, 2023-08-20T23:58:52,187 ^ 2023-08-20T23:58:52,187 vendor/hmmer/src/p7_tophits.c:1509:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,188 vendor/hmmer/src/hmmer.h:1581:16: warning: type of ‘p7_hmm_ScaleExponential’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,188 extern int p7_hmm_ScaleExponential(P7_HMM *hmm, double exp); 2023-08-20T23:58:52,188 ^ 2023-08-20T23:58:52,188 vendor/hmmer/src/p7_hmm.c:821:1: note: ‘p7_hmm_ScaleExponential’ was previously declared here 2023-08-20T23:58:52,189 p7_hmm_ScaleExponential(P7_HMM *hmm, double exp) 2023-08-20T23:58:52,189 ^ 2023-08-20T23:58:52,189 vendor/hmmer/src/p7_hmm.c:821:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,190 vendor/hmmer/src/hmmer.h:1580:16: warning: type of ‘p7_hmm_Scale’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,190 extern int p7_hmm_Scale (P7_HMM *hmm, double scale); 2023-08-20T23:58:52,190 ^ 2023-08-20T23:58:52,190 vendor/hmmer/src/p7_hmm.c:757:1: note: ‘p7_hmm_Scale’ was previously declared here 2023-08-20T23:58:52,191 p7_hmm_Scale(P7_HMM *hmm, double scale) 2023-08-20T23:58:52,191 ^ 2023-08-20T23:58:52,191 vendor/hmmer/src/p7_hmm.c:757:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,192 vendor/hmmer/src/hmmer.h:1578:16: warning: type of ‘p7_hmm_SetConsensus’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,192 extern int p7_hmm_SetConsensus (P7_HMM *hmm, ESL_SQ *sq); 2023-08-20T23:58:52,192 ^ 2023-08-20T23:58:52,192 vendor/hmmer/src/p7_hmm.c:702:1: note: ‘p7_hmm_SetConsensus’ was previously declared here 2023-08-20T23:58:52,193 p7_hmm_SetConsensus(P7_HMM *hmm, ESL_SQ *sq) 2023-08-20T23:58:52,193 ^ 2023-08-20T23:58:52,193 vendor/hmmer/src/p7_hmm.c:702:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,194 vendor/hmmer/src/hmmer.h:1562:16: warning: type of ‘p7_hmm_Create’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,194 extern P7_HMM *p7_hmm_Create(int M, const ESL_ALPHABET *abc); 2023-08-20T23:58:52,194 ^ 2023-08-20T23:58:52,194 vendor/hmmer/src/p7_hmm.c:50:1: note: ‘p7_hmm_Create’ was previously declared here 2023-08-20T23:58:52,195 p7_hmm_Create(int M, const ESL_ALPHABET *abc) 2023-08-20T23:58:52,195 ^ 2023-08-20T23:58:52,195 vendor/hmmer/src/p7_hmm.c:50:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,196 vendor/hmmer/src/hmmer.h:1675:20: warning: type of ‘p7_profile_Destroy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,196 extern void p7_profile_Destroy(P7_PROFILE *gm); 2023-08-20T23:58:52,196 ^ 2023-08-20T23:58:52,197 vendor/hmmer/src/p7_profile.c:306:1: note: ‘p7_profile_Destroy’ was previously declared here 2023-08-20T23:58:52,197 p7_profile_Destroy(P7_PROFILE *gm) 2023-08-20T23:58:52,197 ^ 2023-08-20T23:58:52,197 vendor/hmmer/src/p7_profile.c:306:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,198 vendor/hmmer/src/hmmer.h:1669:20: warning: type of ‘p7_profile_Create’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,198 extern P7_PROFILE *p7_profile_Create(int M, const ESL_ALPHABET *abc); 2023-08-20T23:58:52,198 ^ 2023-08-20T23:58:52,199 vendor/hmmer/src/p7_profile.c:52:1: note: ‘p7_profile_Create’ was previously declared here 2023-08-20T23:58:52,199 p7_profile_Create(int allocM, const ESL_ALPHABET *abc) 2023-08-20T23:58:52,199 ^ 2023-08-20T23:58:52,199 vendor/hmmer/src/p7_profile.c:52:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,200 vendor/hmmer/src/impl_neon/impl_neon.h:269:21: warning: type of ‘p7_oprofile_Create’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,200 extern P7_OPROFILE *p7_oprofile_Create(int M, const ESL_ALPHABET *abc); 2023-08-20T23:58:52,200 ^ 2023-08-20T23:58:52,201 vendor/hmmer/src/impl_neon/p7_oprofile.c:48:1: note: ‘p7_oprofile_Create’ was previously declared here 2023-08-20T23:58:52,201 p7_oprofile_Create(int allocM, const ESL_ALPHABET *abc) 2023-08-20T23:58:52,201 ^ 2023-08-20T23:58:52,201 vendor/hmmer/src/impl_neon/p7_oprofile.c:48:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,202 vendor/hmmer/src/hmmer.h:1425:12: warning: type of ‘p7_ProfileConfig’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,202 extern int p7_ProfileConfig(const P7_HMM *hmm, const P7_BG *bg, P7_PROFILE *gm, int L, int mode); 2023-08-20T23:58:52,202 ^ 2023-08-20T23:58:52,202 vendor/hmmer/src/modelconfig.c:48:1: note: ‘p7_ProfileConfig’ was previously declared here 2023-08-20T23:58:52,203 p7_ProfileConfig(const P7_HMM *hmm, const P7_BG *bg, P7_PROFILE *gm, int L, int mode) 2023-08-20T23:58:52,203 ^ 2023-08-20T23:58:52,203 vendor/hmmer/src/modelconfig.c:48:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,204 vendor/hmmer/src/hmmer.h:1465:12: warning: type of ‘p7_tracealign_Seqs’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,204 extern int p7_tracealign_Seqs(ESL_SQ **sq, P7_TRACE **tr, int nseq, int M, int optflags, P7_HMM *hmm, ESL_MSA **ret_msa); 2023-08-20T23:58:52,204 ^ 2023-08-20T23:58:52,204 vendor/hmmer/src/tracealign.c:97:1: note: ‘p7_tracealign_Seqs’ was previously declared here 2023-08-20T23:58:52,205 p7_tracealign_Seqs(ESL_SQ **sq, P7_TRACE **tr, int nseq, int M, int optflags, P7_HMM *hmm, ESL_MSA **ret_msa) 2023-08-20T23:58:52,205 ^ 2023-08-20T23:58:52,205 vendor/hmmer/src/tracealign.c:97:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,206 vendor/hmmer/src/hmmer.h:1593:16: warning: type of ‘p7_hmm_CalculateOccupancy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,206 extern int p7_hmm_CalculateOccupancy(const P7_HMM *hmm, float *mocc, float *iocc); 2023-08-20T23:58:52,206 ^ 2023-08-20T23:58:52,207 vendor/hmmer/src/p7_hmm.c:1338:1: note: ‘p7_hmm_CalculateOccupancy’ was previously declared here 2023-08-20T23:58:52,207 p7_hmm_CalculateOccupancy(const P7_HMM *hmm, float *mocc, float *iocc) 2023-08-20T23:58:52,207 ^ 2023-08-20T23:58:52,207 vendor/hmmer/src/p7_hmm.c:1338:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,208 vendor/hmmer/src/hmmer.h:1582:16: warning: type of ‘p7_hmm_Renormalize’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,208 extern int p7_hmm_Renormalize(P7_HMM *hmm); 2023-08-20T23:58:52,208 ^ 2023-08-20T23:58:52,208 vendor/hmmer/src/p7_hmm.c:856:1: note: ‘p7_hmm_Renormalize’ was previously declared here 2023-08-20T23:58:52,209 p7_hmm_Renormalize(P7_HMM *hmm) 2023-08-20T23:58:52,209 ^ 2023-08-20T23:58:52,209 vendor/hmmer/src/p7_hmm.c:856:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,210 vendor/hmmer/src/hmmer.h:1577:16: warning: type of ‘p7_hmm_SetComposition’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,210 extern int p7_hmm_SetComposition(P7_HMM *hmm); 2023-08-20T23:58:52,210 ^ 2023-08-20T23:58:52,210 vendor/hmmer/src/p7_hmm.c:625:1: note: ‘p7_hmm_SetComposition’ was previously declared here 2023-08-20T23:58:52,211 p7_hmm_SetComposition(P7_HMM *hmm) 2023-08-20T23:58:52,211 ^ 2023-08-20T23:58:52,211 vendor/hmmer/src/p7_hmm.c:625:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,212 vendor/hmmer/src/hmmer.h:1610:13: warning: type of ‘p7_hmmfile_Position’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,212 extern int p7_hmmfile_Position(P7_HMMFILE *hfp, const off_t offset); 2023-08-20T23:58:52,212 ^ 2023-08-20T23:58:52,212 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1191:1: note: type mismatch in parameter 2 2023-08-20T23:58:52,213 p7_hmmfile_Position(P7_HMMFILE *hfp, const off_t offset) 2023-08-20T23:58:52,213 ^ 2023-08-20T23:58:52,213 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1191:1: note: ‘p7_hmmfile_Position’ was previously declared here 2023-08-20T23:58:52,214 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1191:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,214 vendor/hmmer/src/impl_neon/impl_neon.h:280:21: warning: type of ‘p7_oprofile_Convert’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,214 extern int p7_oprofile_Convert(const P7_PROFILE *gm, P7_OPROFILE *om); 2023-08-20T23:58:52,214 ^ 2023-08-20T23:58:52,215 vendor/hmmer/src/impl_neon/p7_oprofile.c:1020:2: note: ‘p7_oprofile_Convert’ was previously declared here 2023-08-20T23:58:52,215 p7_oprofile_Convert(const P7_PROFILE *gm, P7_OPROFILE *om) 2023-08-20T23:58:52,215 ^ 2023-08-20T23:58:52,216 vendor/hmmer/src/impl_neon/p7_oprofile.c:1020:2: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,216 vendor/easel/esl_sqio.h:131:14: warning: type of ‘esl_sqio_Read’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,216 extern int esl_sqio_Read (ESL_SQFILE *sqfp, ESL_SQ *sq); 2023-08-20T23:58:52,217 ^ 2023-08-20T23:58:52,217 vendor/easel/esl_sqio.c:356:1: note: ‘esl_sqio_Read’ was previously declared here 2023-08-20T23:58:52,217 esl_sqio_Read(ESL_SQFILE *sqfp, ESL_SQ *sq) 2023-08-20T23:58:52,217 ^ 2023-08-20T23:58:52,218 vendor/easel/esl_sqio.c:356:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,218 vendor/hmmer/src/impl_neon/impl_neon.h:311:12: warning: type of ‘p7_oprofile_ReadMSV’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,218 extern int p7_oprofile_ReadMSV (P7_HMMFILE *hfp, ESL_ALPHABET **byp_abc, P7_OPROFILE **ret_om); 2023-08-20T23:58:52,219 ^ 2023-08-20T23:58:52,219 vendor/hmmer/src/impl_neon/io.c:230:1: note: ‘p7_oprofile_ReadMSV’ was previously declared here 2023-08-20T23:58:52,219 p7_oprofile_ReadMSV(P7_HMMFILE *hfp, ESL_ALPHABET **byp_abc, P7_OPROFILE **ret_om) 2023-08-20T23:58:52,219 ^ 2023-08-20T23:58:52,220 vendor/hmmer/src/impl_neon/io.c:230:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,220 vendor/hmmer/src/impl_neon/impl_neon.h:314:12: warning: type of ‘p7_oprofile_ReadRest’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,220 extern int p7_oprofile_ReadRest(P7_HMMFILE *hfp, P7_OPROFILE *om); 2023-08-20T23:58:52,221 ^ 2023-08-20T23:58:52,221 vendor/hmmer/src/impl_neon/io.c:488:1: note: ‘p7_oprofile_ReadRest’ was previously declared here 2023-08-20T23:58:52,221 p7_oprofile_ReadRest(P7_HMMFILE *hfp, P7_OPROFILE *om) 2023-08-20T23:58:52,221 ^ 2023-08-20T23:58:52,222 vendor/hmmer/src/impl_neon/io.c:488:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,222 vendor/hmmer/src/impl_neon/impl_neon.h:271:21: warning: type of ‘p7_oprofile_Destroy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,222 extern void p7_oprofile_Destroy(P7_OPROFILE *om); 2023-08-20T23:58:52,223 ^ 2023-08-20T23:58:52,223 vendor/hmmer/src/impl_neon/p7_oprofile.c:172:1: note: ‘p7_oprofile_Destroy’ was previously declared here 2023-08-20T23:58:52,223 p7_oprofile_Destroy(P7_OPROFILE *om) 2023-08-20T23:58:52,223 ^ 2023-08-20T23:58:52,224 vendor/hmmer/src/impl_neon/p7_oprofile.c:172:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,224 vendor/hmmer/src/impl_neon/impl_neon.h:281:21: warning: type of ‘p7_oprofile_ReconfigLength’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,224 extern int p7_oprofile_ReconfigLength (P7_OPROFILE *om, int L); 2023-08-20T23:58:52,225 ^ 2023-08-20T23:58:52,225 vendor/hmmer/src/impl_neon/p7_oprofile.c:1077:1: note: ‘p7_oprofile_ReconfigLength’ was previously declared here 2023-08-20T23:58:52,225 p7_oprofile_ReconfigLength(P7_OPROFILE *om, int L) 2023-08-20T23:58:52,225 ^ 2023-08-20T23:58:52,226 vendor/hmmer/src/impl_neon/p7_oprofile.c:1077:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,226 vendor/hmmer/src/hmmer.h:1648:12: warning: type of ‘p7_Pipeline’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,226 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2023-08-20T23:58:52,227 ^ 2023-08-20T23:58:52,227 vendor/hmmer/src/p7_pipeline.c:697:1: note: ‘p7_Pipeline’ was previously declared here 2023-08-20T23:58:52,227 p7_Pipeline(P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *hitlist) 2023-08-20T23:58:52,227 ^ 2023-08-20T23:58:52,228 vendor/hmmer/src/p7_pipeline.c:697:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,228 vendor/easel/esl_sq.h:161:16: warning: type of ‘esl_sq_Copy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,228 extern int esl_sq_Copy(const ESL_SQ *src, ESL_SQ *dst); 2023-08-20T23:58:52,229 ^ 2023-08-20T23:58:52,229 vendor/easel/esl_sq.c:265:1: note: ‘esl_sq_Copy’ was previously declared here 2023-08-20T23:58:52,229 esl_sq_Copy(const ESL_SQ *src, ESL_SQ *dst) 2023-08-20T23:58:52,229 ^ 2023-08-20T23:58:52,230 vendor/easel/esl_sq.c:265:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,230 vendor/easel/esl_sqio.h:133:14: warning: type of ‘esl_sqio_ReadWindow’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,230 extern int esl_sqio_ReadWindow (ESL_SQFILE *sqfp, int C, int W, ESL_SQ *sq); 2023-08-20T23:58:52,231 ^ 2023-08-20T23:58:52,231 vendor/easel/esl_sqio.c:500:1: note: ‘esl_sqio_ReadWindow’ was previously declared here 2023-08-20T23:58:52,232 esl_sqio_ReadWindow(ESL_SQFILE *sqfp, int C, int W, ESL_SQ *sq) 2023-08-20T23:58:52,232 ^ 2023-08-20T23:58:52,233 vendor/easel/esl_sqio.c:500:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,233 vendor/hmmer/src/hmmer.h:1645:12: warning: type of ‘p7_pli_NewModel’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,234 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2023-08-20T23:58:52,234 ^ 2023-08-20T23:58:52,234 vendor/hmmer/src/p7_pipeline.c:492:1: note: ‘p7_pli_NewModel’ was previously declared here 2023-08-20T23:58:52,235 p7_pli_NewModel(P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg) 2023-08-20T23:58:52,235 ^ 2023-08-20T23:58:52,236 vendor/hmmer/src/p7_pipeline.c:492:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,236 vendor/easel/esl_sq.h:183:16: warning: type of ‘esl_sq_CreateDigital’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,236 extern ESL_SQ *esl_sq_CreateDigital(const ESL_ALPHABET *abc); 2023-08-20T23:58:52,237 ^ 2023-08-20T23:58:52,237 vendor/easel/esl_sq.c:730:1: note: ‘esl_sq_CreateDigital’ was previously declared here 2023-08-20T23:58:52,237 esl_sq_CreateDigital(const ESL_ALPHABET *abc) 2023-08-20T23:58:52,238 ^ 2023-08-20T23:58:52,238 vendor/easel/esl_sq.c:730:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,238 vendor/easel/esl_sq.h:169:16: warning: type of ‘esl_sq_SetAccession’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,238 extern int esl_sq_SetAccession (ESL_SQ *sq, const char *acc); 2023-08-20T23:58:52,239 ^ 2023-08-20T23:58:52,239 vendor/easel/esl_sq.c:1087:1: note: ‘esl_sq_SetAccession’ was previously declared here 2023-08-20T23:58:52,239 esl_sq_SetAccession(ESL_SQ *sq, const char *acc) 2023-08-20T23:58:52,240 ^ 2023-08-20T23:58:52,240 vendor/easel/esl_sq.c:1087:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,240 vendor/easel/esl_sq.h:168:16: warning: type of ‘esl_sq_SetName’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,241 extern int esl_sq_SetName (ESL_SQ *sq, const char *name); 2023-08-20T23:58:52,241 ^ 2023-08-20T23:58:52,241 vendor/easel/esl_sq.c:1049:1: note: ‘esl_sq_SetName’ was previously declared here 2023-08-20T23:58:52,241 esl_sq_SetName(ESL_SQ *sq, const char *name) 2023-08-20T23:58:52,242 ^ 2023-08-20T23:58:52,242 vendor/easel/esl_sq.c:1049:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,242 vendor/easel/esl_sq.h:170:16: warning: type of ‘esl_sq_SetDesc’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,243 extern int esl_sq_SetDesc (ESL_SQ *sq, const char *desc); 2023-08-20T23:58:52,243 ^ 2023-08-20T23:58:52,243 vendor/easel/esl_sq.c:1127:1: note: ‘esl_sq_SetDesc’ was previously declared here 2023-08-20T23:58:52,243 esl_sq_SetDesc(ESL_SQ *sq, const char *desc) 2023-08-20T23:58:52,244 ^ 2023-08-20T23:58:52,244 vendor/easel/esl_sq.c:1127:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,244 vendor/easel/esl_sq.h:171:16: warning: type of ‘esl_sq_SetSource’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,245 extern int esl_sq_SetSource (ESL_SQ *sq, const char *source); 2023-08-20T23:58:52,245 ^ 2023-08-20T23:58:52,245 vendor/easel/esl_sq.c:1165:1: note: ‘esl_sq_SetSource’ was previously declared here 2023-08-20T23:58:52,246 esl_sq_SetSource(ESL_SQ *sq, const char *source) 2023-08-20T23:58:52,246 ^ 2023-08-20T23:58:52,246 vendor/easel/esl_sq.c:1165:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,247 vendor/easel/esl_sq.h:160:16: warning: type of ‘esl_sq_GrowTo’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,247 extern int esl_sq_GrowTo(ESL_SQ *sq, int64_t n); 2023-08-20T23:58:52,247 ^ 2023-08-20T23:58:52,248 vendor/easel/esl_sq.c:209:1: note: ‘esl_sq_GrowTo’ was previously declared here 2023-08-20T23:58:52,248 esl_sq_GrowTo(ESL_SQ *sq, int64_t n) 2023-08-20T23:58:52,248 ^ 2023-08-20T23:58:52,249 vendor/easel/esl_sq.c:209:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,249 vendor/hmmer/src/hmmer.h:1647:12: warning: type of ‘p7_pli_NewSeq’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,249 extern int p7_pli_NewSeq (P7_PIPELINE *pli, const ESL_SQ *sq); 2023-08-20T23:58:52,250 ^ 2023-08-20T23:58:52,250 vendor/hmmer/src/p7_pipeline.c:576:1: note: ‘p7_pli_NewSeq’ was previously declared here 2023-08-20T23:58:52,250 p7_pli_NewSeq(P7_PIPELINE *pli, const ESL_SQ *sq) 2023-08-20T23:58:52,251 ^ 2023-08-20T23:58:52,251 vendor/hmmer/src/p7_pipeline.c:576:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,251 vendor/easel/esl_sq.h:179:16: warning: type of ‘esl_sq_ReverseComplement’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,252 extern int esl_sq_ReverseComplement(ESL_SQ *sq); 2023-08-20T23:58:52,252 ^ 2023-08-20T23:58:52,253 vendor/easel/esl_sq.c:1536:1: note: ‘esl_sq_ReverseComplement’ was previously declared here 2023-08-20T23:58:52,253 esl_sq_ReverseComplement(ESL_SQ *sq) 2023-08-20T23:58:52,253 ^ 2023-08-20T23:58:52,254 vendor/easel/esl_sq.c:1536:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,254 vendor/hmmer/src/hmmer.h:1649:12: warning: type of ‘p7_Pipeline_LongTarget’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,254 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-20T23:58:52,255 ^ 2023-08-20T23:58:52,255 vendor/hmmer/src/p7_pipeline.c:1496:1: note: ‘p7_Pipeline_LongTarget’ was previously declared here 2023-08-20T23:58:52,255 p7_Pipeline_LongTarget(P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2023-08-20T23:58:52,256 ^ 2023-08-20T23:58:52,256 vendor/hmmer/src/p7_pipeline.c:1496:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,256 vendor/easel/esl_sq.h:163:16: warning: type of ‘esl_sq_Reuse’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,257 extern int esl_sq_Reuse (ESL_SQ *sq); 2023-08-20T23:58:52,257 ^ 2023-08-20T23:58:52,257 vendor/easel/esl_sq.c:443:1: note: ‘esl_sq_Reuse’ was previously declared here 2023-08-20T23:58:52,257 esl_sq_Reuse(ESL_SQ *sq) 2023-08-20T23:58:52,258 ^ 2023-08-20T23:58:52,258 vendor/easel/esl_sq.c:443:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,258 vendor/easel/esl_sq.h:166:16: warning: type of ‘esl_sq_Destroy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,259 extern void esl_sq_Destroy (ESL_SQ *sq); 2023-08-20T23:58:52,259 ^ 2023-08-20T23:58:52,259 vendor/easel/esl_sq.c:550:1: note: ‘esl_sq_Destroy’ was previously declared here 2023-08-20T23:58:52,260 esl_sq_Destroy(ESL_SQ *sq) 2023-08-20T23:58:52,260 ^ 2023-08-20T23:58:52,260 vendor/easel/esl_sq.c:550:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,260 vendor/hmmer/src/hmmer.h:1673:20: warning: type of ‘p7_profile_Reuse’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,261 extern int p7_profile_Reuse(P7_PROFILE *gm); 2023-08-20T23:58:52,261 ^ 2023-08-20T23:58:52,261 vendor/hmmer/src/p7_profile.c:242:1: note: ‘p7_profile_Reuse’ was previously declared here 2023-08-20T23:58:52,262 p7_profile_Reuse(P7_PROFILE *gm) 2023-08-20T23:58:52,262 ^ 2023-08-20T23:58:52,262 vendor/hmmer/src/p7_profile.c:242:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,262 vendor/hmmer/src/hmmer.h:1467:12: warning: type of ‘p7_tracealign_computeTraces’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,263 extern int p7_tracealign_computeTraces(P7_HMM *hmm, ESL_SQ **sq, int offset, int N, P7_TRACE **tr); 2023-08-20T23:58:52,263 ^ 2023-08-20T23:58:52,263 vendor/hmmer/src/tracealign.c:236:1: note: ‘p7_tracealign_computeTraces’ was previously declared here 2023-08-20T23:58:52,264 p7_tracealign_computeTraces(P7_HMM *hmm, ESL_SQ **sq, int offset, int N, P7_TRACE **tr) 2023-08-20T23:58:52,264 ^ 2023-08-20T23:58:52,264 vendor/hmmer/src/tracealign.c:236:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,265 vendor/hmmer/src/impl_neon/impl_neon.h:284:21: warning: type of ‘p7_oprofile_ReconfigMultihit’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,265 extern int p7_oprofile_ReconfigMultihit (P7_OPROFILE *om, int L); 2023-08-20T23:58:52,265 ^ 2023-08-20T23:58:52,266 vendor/hmmer/src/impl_neon/p7_oprofile.c:1166:1: note: ‘p7_oprofile_ReconfigMultihit’ was previously declared here 2023-08-20T23:58:52,266 p7_oprofile_ReconfigMultihit(P7_OPROFILE *om, int L) 2023-08-20T23:58:52,266 ^ 2023-08-20T23:58:52,266 vendor/hmmer/src/impl_neon/p7_oprofile.c:1166:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,267 vendor/hmmer/src/impl_neon/impl_neon.h:285:21: warning: type of ‘p7_oprofile_ReconfigUnihit’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,267 extern int p7_oprofile_ReconfigUnihit (P7_OPROFILE *om, int L); 2023-08-20T23:58:52,267 ^ 2023-08-20T23:58:52,268 vendor/hmmer/src/impl_neon/p7_oprofile.c:1191:1: note: ‘p7_oprofile_ReconfigUnihit’ was previously declared here 2023-08-20T23:58:52,268 p7_oprofile_ReconfigUnihit(P7_OPROFILE *om, int L) 2023-08-20T23:58:52,268 ^ 2023-08-20T23:58:52,269 vendor/hmmer/src/impl_neon/p7_oprofile.c:1191:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,269 vendor/hmmer/src/hmmer.h:1427:12: warning: type of ‘p7_ReconfigMultihit’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,269 extern int p7_ReconfigMultihit(P7_PROFILE *gm, int L); 2023-08-20T23:58:52,269 ^ 2023-08-20T23:58:52,270 vendor/hmmer/src/modelconfig.c:256:1: note: ‘p7_ReconfigMultihit’ was previously declared here 2023-08-20T23:58:52,270 p7_ReconfigMultihit(P7_PROFILE *gm, int L) 2023-08-20T23:58:52,270 ^ 2023-08-20T23:58:52,271 vendor/hmmer/src/modelconfig.c:256:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,271 vendor/hmmer/src/hmmer.h:1428:12: warning: type of ‘p7_ReconfigUnihit’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,271 extern int p7_ReconfigUnihit (P7_PROFILE *gm, int L); 2023-08-20T23:58:52,271 ^ 2023-08-20T23:58:52,272 vendor/hmmer/src/modelconfig.c:276:1: note: ‘p7_ReconfigUnihit’ was previously declared here 2023-08-20T23:58:52,272 p7_ReconfigUnihit(P7_PROFILE *gm, int L) 2023-08-20T23:58:52,273 ^ 2023-08-20T23:58:52,273 vendor/hmmer/src/modelconfig.c:276:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,273 vendor/hmmer/src/hmmer.h:1432:15: warning: type of ‘p7_MeanMatchEntropy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,274 extern double p7_MeanMatchEntropy (const P7_HMM *hmm); 2023-08-20T23:58:52,274 ^ 2023-08-20T23:58:52,275 vendor/hmmer/src/modelstats.c:53:1: note: ‘p7_MeanMatchEntropy’ was previously declared here 2023-08-20T23:58:52,275 p7_MeanMatchEntropy(const P7_HMM *hmm) 2023-08-20T23:58:52,276 ^ 2023-08-20T23:58:52,276 vendor/hmmer/src/modelstats.c:53:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,276 vendor/hmmer/src/hmmer.h:1431:15: warning: type of ‘p7_MeanMatchInfo’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,277 extern double p7_MeanMatchInfo (const P7_HMM *hmm, const P7_BG *bg); 2023-08-20T23:58:52,277 ^ 2023-08-20T23:58:52,277 vendor/hmmer/src/modelstats.c:34:1: note: ‘p7_MeanMatchInfo’ was previously declared here 2023-08-20T23:58:52,277 p7_MeanMatchInfo(const P7_HMM *hmm, const P7_BG *bg) 2023-08-20T23:58:52,278 ^ 2023-08-20T23:58:52,278 vendor/hmmer/src/modelstats.c:34:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,278 vendor/hmmer/src/hmmer.h:1433:15: warning: type of ‘p7_MeanMatchRelativeEntropy’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,279 extern double p7_MeanMatchRelativeEntropy(const P7_HMM *hmm, const P7_BG *bg); 2023-08-20T23:58:52,279 ^ 2023-08-20T23:58:52,279 vendor/hmmer/src/modelstats.c:80:1: note: ‘p7_MeanMatchRelativeEntropy’ was previously declared here 2023-08-20T23:58:52,280 p7_MeanMatchRelativeEntropy(const P7_HMM *hmm, const P7_BG *bg) 2023-08-20T23:58:52,280 ^ 2023-08-20T23:58:52,280 vendor/hmmer/src/modelstats.c:80:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,281 vendor/hmmer/src/hmmer.h:1568:16: warning: type of ‘p7_hmm_Zero’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,281 extern int p7_hmm_Zero(P7_HMM *hmm); 2023-08-20T23:58:52,281 ^ 2023-08-20T23:58:52,281 vendor/hmmer/src/p7_hmm.c:313:1: note: ‘p7_hmm_Zero’ was previously declared here 2023-08-20T23:58:52,282 p7_hmm_Zero(P7_HMM *hmm) 2023-08-20T23:58:52,282 ^ 2023-08-20T23:58:52,282 vendor/hmmer/src/p7_hmm.c:313:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,283 pyhmmer/reexports/p7_hmmfile.h:10:12: warning: type of ‘read_asc20hmm’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,283 extern int read_asc20hmm(P7_HMMFILE* hfp, ESL_ALPHABET** ret_abc, P7_HMM** opt_hmm); 2023-08-20T23:58:52,283 ^ 2023-08-20T23:58:52,284 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1707:1: note: ‘read_asc20hmm’ was previously declared here 2023-08-20T23:58:52,284 read_asc20hmm(P7_HMMFILE *hfp, ESL_ALPHABET **ret_abc, P7_HMM **opt_hmm) 2023-08-20T23:58:52,284 ^ 2023-08-20T23:58:52,284 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1707:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,285 pyhmmer/reexports/p7_hmmfile.h:11:12: warning: type of ‘read_asc30hmm’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,285 extern int read_asc30hmm(P7_HMMFILE* hfp, ESL_ALPHABET** ret_abc, P7_HMM** opt_hmm); 2023-08-20T23:58:52,285 ^ 2023-08-20T23:58:52,286 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1245:1: note: ‘read_asc30hmm’ was previously declared here 2023-08-20T23:58:52,286 read_asc30hmm(P7_HMMFILE *hfp, ESL_ALPHABET **ret_abc, P7_HMM **opt_hmm) 2023-08-20T23:58:52,286 ^ 2023-08-20T23:58:52,287 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1245:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,287 pyhmmer/reexports/p7_hmmfile.h:12:12: warning: type of ‘read_bin30hmm’ does not match original declaration [-Wlto-type-mismatch] 2023-08-20T23:58:52,287 extern int read_bin30hmm(P7_HMMFILE* hfp, ESL_ALPHABET** ret_abc, P7_HMM** opt_hmm); 2023-08-20T23:58:52,288 ^ 2023-08-20T23:58:52,288 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1585:1: note: ‘read_bin30hmm’ was previously declared here 2023-08-20T23:58:52,288 read_bin30hmm(P7_HMMFILE *hfp, ESL_ALPHABET **ret_abc, P7_HMM **opt_hmm) 2023-08-20T23:58:52,288 ^ 2023-08-20T23:58:52,289 build/temp.linux-armv7l-cpython-37/p7_hmmfile.c:1585:1: note: code may be misoptimized unless -fno-strict-aliasing is used 2023-08-20T23:58:52,289 building 'pyhmmer.daemon' extension 2023-08-20T23:58:52,289 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -DHAS_PYINTERPRETERSTATE_GETID=1 -DeslENABLE_NEON=1 -DCYTHON_WITHOUT_ASSERTIONS=1 -Ibuild/temp.linux-armv7l-cpython-37 -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ivendor/easel -I/usr/include/python3.7m -c pyhmmer/daemon.c -o build/temp.linux-armv7l-cpython-37/pyhmmer/daemon.o -mfpu=neon -Wno-unused-variable 2023-08-21T00:00:28,777 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-armv7l-cpython-37/pyhmmer/daemon.o build/temp.linux-armv7l-cpython-37/libhmmer.a build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/libdivsufsort.a -Lbuild/temp.linux-armv7l-cpython-37 -L/usr/lib -Lbuild/temp.linux-armv7l-cpython-37 -lhmmer -leasel -ldivsufsort -ldivsufsort -leasel -lhmmer -o build/lib.linux-armv7l-cpython-37/pyhmmer/daemon.cpython-37m-arm-linux-gnueabihf.so -mfpu=neon 2023-08-21T00:02:20,564 installing to build/bdist.linux-armv7l/wheel 2023-08-21T00:02:20,566 running install 2023-08-21T00:02:20,629 running install_lib 2023-08-21T00:02:20,647 creating build/bdist.linux-armv7l 2023-08-21T00:02:20,649 creating build/bdist.linux-armv7l/wheel 2023-08-21T00:02:20,654 creating build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:20,657 copying build/lib.linux-armv7l-cpython-37/pyhmmer/easel.pyi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:20,665 creating build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-08-21T00:02:20,667 copying build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj/bsd.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-08-21T00:02:20,672 copying build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj/util.h -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-08-21T00:02:20,676 copying build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj/linux.h -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-08-21T00:02:20,682 copying build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj/__init__.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-08-21T00:02:20,685 copying build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj/bsd.h -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-08-21T00:02:20,690 copying build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj/linux.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/fileobj 2023-08-21T00:02:20,695 copying build/lib.linux-armv7l-cpython-37/pyhmmer/easel.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:20,855 copying build/lib.linux-armv7l-cpython-37/pyhmmer/daemon.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:20,861 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-08-21T00:02:20,864 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,866 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_profile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,870 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_hmm.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,874 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_hmmfile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,878 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_block.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,882 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/__init__.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,886 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_tracealigner.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,889 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_tophits.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,894 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_builder.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,898 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_hit.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,902 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_pipeline.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,907 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,910 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_traces.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,914 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7/test_background.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_plan7 2023-08-21T00:02:20,918 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_doctest.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-08-21T00:02:20,922 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_hmmer.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-08-21T00:02:20,927 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/requirements.txt -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-08-21T00:02:20,932 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,934 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_ssi.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,938 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_randomness.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,941 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_msafile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,946 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_gencode.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,949 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_block.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,954 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_keyhash.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,957 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/__init__.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,961 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_sequencefile.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,966 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_matrix.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,970 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_sequence.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,975 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_alphabet.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,978 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_vector.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,982 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_msa.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,987 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel/test_bitfield.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/test_easel 2023-08-21T00:02:20,990 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/__init__.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-08-21T00:02:20,995 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data 2023-08-21T00:02:20,998 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-08-21T00:02:21,000 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa/LuxC.faa -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-08-21T00:02:21,004 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa/laccase.clw -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-08-21T00:02:21,009 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-08-21T00:02:21,014 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa/LuxC.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/msa 2023-08-21T00:02:21,019 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,021 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/PF02826.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,025 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/t2pks.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,031 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/bmyD3.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,034 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/bmyD1.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,038 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/PF02826.domtbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,042 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,046 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/t2pks.domtbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,052 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,057 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables/bmyD2.tbl -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/tables 2023-08-21T00:02:21,062 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,063 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/KR-6.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,069 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/KR-4.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,073 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,078 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,082 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/KR-3.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,087 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/KR-5.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,092 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,096 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/KR-1.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,100 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/KR-2.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,104 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/jackhmmer 2023-08-21T00:02:21,109 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms 2023-08-21T00:02:21,113 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,114 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,122 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,134 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,144 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,201 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,208 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,218 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,223 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,227 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,233 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,239 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,242 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,250 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,255 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,259 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,520 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,641 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,775 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,778 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,783 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/db 2023-08-21T00:02:21,790 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-08-21T00:02:21,792 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-08-21T00:02:21,803 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-08-21T00:02:21,811 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-08-21T00:02:21,821 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-08-21T00:02:21,838 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-08-21T00:02:21,859 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-08-21T00:02:22,167 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt 2023-08-21T00:02:22,182 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-08-21T00:02:22,184 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-08-21T00:02:22,190 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-08-21T00:02:22,197 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-08-21T00:02:22,205 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/bin 2023-08-21T00:02:22,336 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/make.sh -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms 2023-08-21T00:02:22,342 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-08-21T00:02:22,344 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-08-21T00:02:22,356 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-08-21T00:02:22,608 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-08-21T00:02:22,616 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/hmms/txt2 2023-08-21T00:02:22,630 creating build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-08-21T00:02:22,631 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-08-21T00:02:22,646 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs/bmyD.fna -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-08-21T00:02:22,650 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-08-21T00:02:22,699 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs/CP000560.2.fna -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-08-21T00:02:22,858 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs/LuxC.faa -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-08-21T00:02:22,863 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-08-21T00:02:22,872 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs/PKSI.faa -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data/seqs 2023-08-21T00:02:22,877 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/README.md -> build/bdist.linux-armv7l/wheel/pyhmmer/tests/data 2023-08-21T00:02:22,881 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_errors.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-08-21T00:02:22,884 copying build/lib.linux-armv7l-cpython-37/pyhmmer/tests/utils.py -> build/bdist.linux-armv7l/wheel/pyhmmer/tests 2023-08-21T00:02:22,887 copying build/lib.linux-armv7l-cpython-37/pyhmmer/exceptions.pxi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,891 copying build/lib.linux-armv7l-cpython-37/pyhmmer/errors.pyx -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,895 copying build/lib.linux-armv7l-cpython-37/pyhmmer/__init__.py -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,899 copying build/lib.linux-armv7l-cpython-37/pyhmmer/plan7.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,903 copying build/lib.linux-armv7l-cpython-37/pyhmmer/easel.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,908 copying build/lib.linux-armv7l-cpython-37/pyhmmer/_getid.pxi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,913 creating build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-08-21T00:02:22,914 copying build/lib.linux-armv7l-cpython-37/pyhmmer/reexports/p7_hmmfile.h -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-08-21T00:02:22,918 copying build/lib.linux-armv7l-cpython-37/pyhmmer/reexports/esl_sqio_ascii.h -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-08-21T00:02:22,922 copying build/lib.linux-armv7l-cpython-37/pyhmmer/reexports/p7_tophits.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-08-21T00:02:22,926 copying build/lib.linux-armv7l-cpython-37/pyhmmer/reexports/__init__.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-08-21T00:02:22,929 copying build/lib.linux-armv7l-cpython-37/pyhmmer/reexports/p7_hmmfile.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-08-21T00:02:22,932 copying build/lib.linux-armv7l-cpython-37/pyhmmer/reexports/esl_sqio_ascii.pxd -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-08-21T00:02:22,936 copying build/lib.linux-armv7l-cpython-37/pyhmmer/reexports/p7_tophits.h -> build/bdist.linux-armv7l/wheel/pyhmmer/reexports 2023-08-21T00:02:22,939 copying build/lib.linux-armv7l-cpython-37/pyhmmer/plan7.pyi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,946 copying build/lib.linux-armv7l-cpython-37/pyhmmer/daemon.pyi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,950 copying build/lib.linux-armv7l-cpython-37/pyhmmer/errors.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,968 copying build/lib.linux-armv7l-cpython-37/pyhmmer/errors.pyi -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,971 copying build/lib.linux-armv7l-cpython-37/pyhmmer/hmmer.py -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,979 copying build/lib.linux-armv7l-cpython-37/pyhmmer/easel.pyx -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:22,997 copying build/lib.linux-armv7l-cpython-37/pyhmmer/utils.py -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:23,000 copying build/lib.linux-armv7l-cpython-37/pyhmmer/daemon.pyx -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:23,006 copying build/lib.linux-armv7l-cpython-37/pyhmmer/plan7.pyx -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:23,029 copying build/lib.linux-armv7l-cpython-37/pyhmmer/daemon.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:23,086 copying build/lib.linux-armv7l-cpython-37/pyhmmer/py.typed -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:23,089 copying build/lib.linux-armv7l-cpython-37/pyhmmer/plan7.cpython-37m-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pyhmmer 2023-08-21T00:02:23,316 running install_egg_info 2023-08-21T00:02:23,347 Copying pyhmmer.egg-info to build/bdist.linux-armv7l/wheel/pyhmmer-0.10.2-py3.7.egg-info 2023-08-21T00:02:23,374 running install_scripts 2023-08-21T00:02:23,474 creating build/bdist.linux-armv7l/wheel/pyhmmer-0.10.2.dist-info/WHEEL 2023-08-21T00:02:23,480 creating '/tmp/pip-wheel-ymvbk03n/.tmp-4_lhxqh_/pyhmmer-0.10.2-cp37-cp37m-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-21T00:02:23,486 adding 'pyhmmer/__init__.py' 2023-08-21T00:02:23,489 adding 'pyhmmer/_getid.pxi' 2023-08-21T00:02:23,969 adding 'pyhmmer/daemon.cpython-37m-arm-linux-gnueabihf.so' 2023-08-21T00:02:23,992 adding 'pyhmmer/daemon.pxd' 2023-08-21T00:02:23,995 adding 'pyhmmer/daemon.pyi' 2023-08-21T00:02:24,002 adding 'pyhmmer/daemon.pyx' 2023-08-21T00:02:25,401 adding 'pyhmmer/easel.cpython-37m-arm-linux-gnueabihf.so' 2023-08-21T00:02:25,466 adding 'pyhmmer/easel.pxd' 2023-08-21T00:02:25,472 adding 'pyhmmer/easel.pyi' 2023-08-21T00:02:25,527 adding 'pyhmmer/easel.pyx' 2023-08-21T00:02:25,629 adding 'pyhmmer/errors.cpython-37m-arm-linux-gnueabihf.so' 2023-08-21T00:02:25,637 adding 'pyhmmer/errors.pyi' 2023-08-21T00:02:25,640 adding 'pyhmmer/errors.pyx' 2023-08-21T00:02:25,643 adding 'pyhmmer/exceptions.pxi' 2023-08-21T00:02:25,659 adding 'pyhmmer/hmmer.py' 2023-08-21T00:02:27,757 adding 'pyhmmer/plan7.cpython-37m-arm-linux-gnueabihf.so' 2023-08-21T00:02:27,854 adding 'pyhmmer/plan7.pxd' 2023-08-21T00:02:27,862 adding 'pyhmmer/plan7.pyi' 2023-08-21T00:02:27,937 adding 'pyhmmer/plan7.pyx' 2023-08-21T00:02:27,946 adding 'pyhmmer/py.typed' 2023-08-21T00:02:27,949 adding 'pyhmmer/utils.py' 2023-08-21T00:02:27,953 adding 'pyhmmer/fileobj/__init__.pxd' 2023-08-21T00:02:27,956 adding 'pyhmmer/fileobj/bsd.h' 2023-08-21T00:02:27,958 adding 'pyhmmer/fileobj/bsd.pxd' 2023-08-21T00:02:27,962 adding 'pyhmmer/fileobj/linux.h' 2023-08-21T00:02:27,964 adding 'pyhmmer/fileobj/linux.pxd' 2023-08-21T00:02:27,967 adding 'pyhmmer/fileobj/util.h' 2023-08-21T00:02:27,970 adding 'pyhmmer/reexports/__init__.pxd' 2023-08-21T00:02:27,973 adding 'pyhmmer/reexports/esl_sqio_ascii.h' 2023-08-21T00:02:27,976 adding 'pyhmmer/reexports/esl_sqio_ascii.pxd' 2023-08-21T00:02:27,979 adding 'pyhmmer/reexports/p7_hmmfile.h' 2023-08-21T00:02:27,982 adding 'pyhmmer/reexports/p7_hmmfile.pxd' 2023-08-21T00:02:27,984 adding 'pyhmmer/reexports/p7_tophits.h' 2023-08-21T00:02:27,986 adding 'pyhmmer/reexports/p7_tophits.pxd' 2023-08-21T00:02:27,990 adding 'pyhmmer/tests/__init__.py' 2023-08-21T00:02:27,993 adding 'pyhmmer/tests/requirements.txt' 2023-08-21T00:02:27,996 adding 'pyhmmer/tests/test_doctest.py' 2023-08-21T00:02:27,999 adding 'pyhmmer/tests/test_errors.py' 2023-08-21T00:02:28,006 adding 'pyhmmer/tests/test_hmmer.py' 2023-08-21T00:02:28,009 adding 'pyhmmer/tests/utils.py' 2023-08-21T00:02:28,013 adding 'pyhmmer/tests/data/README.md' 2023-08-21T00:02:28,017 adding 'pyhmmer/tests/data/hmms/make.sh' 2023-08-21T00:02:28,025 adding 'pyhmmer/tests/data/hmms/bin/PF02826.h3m' 2023-08-21T00:02:28,036 adding 'pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m' 2023-08-21T00:02:28,047 adding 'pyhmmer/tests/data/hmms/bin/Thioesterase.h3m' 2023-08-21T00:02:28,459 adding 'pyhmmer/tests/data/hmms/bin/t2pks.h3m' 2023-08-21T00:02:28,544 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm' 2023-08-21T00:02:28,550 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f' 2023-08-21T00:02:28,553 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i' 2023-08-21T00:02:28,560 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m' 2023-08-21T00:02:28,573 adding 'pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p' 2023-08-21T00:02:28,636 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm' 2023-08-21T00:02:28,644 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f' 2023-08-21T00:02:28,647 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i' 2023-08-21T00:02:28,658 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m' 2023-08-21T00:02:28,678 adding 'pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p' 2023-08-21T00:02:28,729 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm' 2023-08-21T00:02:28,737 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f' 2023-08-21T00:02:28,740 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i' 2023-08-21T00:02:28,750 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m' 2023-08-21T00:02:28,766 adding 'pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p' 2023-08-21T00:02:30,944 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm' 2023-08-21T00:02:31,365 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f' 2023-08-21T00:02:31,390 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i' 2023-08-21T00:02:31,801 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m' 2023-08-21T00:02:32,624 adding 'pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p' 2023-08-21T00:02:32,760 adding 'pyhmmer/tests/data/hmms/txt/LuxC.hmm' 2023-08-21T00:02:32,797 adding 'pyhmmer/tests/data/hmms/txt/PF02826.hmm' 2023-08-21T00:02:32,861 adding 'pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm' 2023-08-21T00:02:32,914 adding 'pyhmmer/tests/data/hmms/txt/Thioesterase.hmm' 2023-08-21T00:02:32,939 adding 'pyhmmer/tests/data/hmms/txt/bmyD.hmm' 2023-08-21T00:02:33,031 adding 'pyhmmer/tests/data/hmms/txt/laccase.hmm' 2023-08-21T00:02:35,214 adding 'pyhmmer/tests/data/hmms/txt/t2pks.hmm' 2023-08-21T00:02:35,357 adding 'pyhmmer/tests/data/hmms/txt2/PF02826.hmm2' 2023-08-21T00:02:35,397 adding 'pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2' 2023-08-21T00:02:35,432 adding 'pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2' 2023-08-21T00:02:36,897 adding 'pyhmmer/tests/data/hmms/txt2/t2pks.hmm2' 2023-08-21T00:02:36,996 adding 'pyhmmer/tests/data/jackhmmer/KR-1.sto' 2023-08-21T00:02:37,000 adding 'pyhmmer/tests/data/jackhmmer/KR-1_bkup.sto' 2023-08-21T00:02:37,005 adding 'pyhmmer/tests/data/jackhmmer/KR-2.sto' 2023-08-21T00:02:37,010 adding 'pyhmmer/tests/data/jackhmmer/KR-3.sto' 2023-08-21T00:02:37,015 adding 'pyhmmer/tests/data/jackhmmer/KR-4.sto' 2023-08-21T00:02:37,021 adding 'pyhmmer/tests/data/jackhmmer/KR-5.sto' 2023-08-21T00:02:37,026 adding 'pyhmmer/tests/data/jackhmmer/KR-6.sto' 2023-08-21T00:02:37,030 adding 'pyhmmer/tests/data/jackhmmer/p12748-1.sto' 2023-08-21T00:02:37,033 adding 'pyhmmer/tests/data/jackhmmer/p12748-2.sto' 2023-08-21T00:02:37,037 adding 'pyhmmer/tests/data/jackhmmer/p12748-3.sto' 2023-08-21T00:02:37,042 adding 'pyhmmer/tests/data/msa/LuxC.faa' 2023-08-21T00:02:37,046 adding 'pyhmmer/tests/data/msa/LuxC.hmmalign.sto' 2023-08-21T00:02:37,051 adding 'pyhmmer/tests/data/msa/LuxC.sto' 2023-08-21T00:02:37,055 adding 'pyhmmer/tests/data/msa/laccase.clw' 2023-08-21T00:02:37,377 adding 'pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa' 2023-08-21T00:02:37,490 adding 'pyhmmer/tests/data/seqs/BGC0001090.gbk' 2023-08-21T00:02:42,711 adding 'pyhmmer/tests/data/seqs/CP000560.2.fna' 2023-08-21T00:02:42,911 adding 'pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna' 2023-08-21T00:02:42,917 adding 'pyhmmer/tests/data/seqs/LuxC.faa' 2023-08-21T00:02:42,924 adding 'pyhmmer/tests/data/seqs/PKSI.faa' 2023-08-21T00:02:42,927 adding 'pyhmmer/tests/data/seqs/bmyD.fna' 2023-08-21T00:02:42,932 adding 'pyhmmer/tests/data/tables/A0A089QRB9.domtbl' 2023-08-21T00:02:42,937 adding 'pyhmmer/tests/data/tables/PF02826.domtbl' 2023-08-21T00:02:42,941 adding 'pyhmmer/tests/data/tables/PF02826.tbl' 2023-08-21T00:02:42,944 adding 'pyhmmer/tests/data/tables/bmyD1.tbl' 2023-08-21T00:02:42,947 adding 'pyhmmer/tests/data/tables/bmyD2.tbl' 2023-08-21T00:02:42,950 adding 'pyhmmer/tests/data/tables/bmyD3.tbl' 2023-08-21T00:02:42,963 adding 'pyhmmer/tests/data/tables/t2pks.domtbl' 2023-08-21T00:02:42,969 adding 'pyhmmer/tests/data/tables/t2pks.scan.tbl' 2023-08-21T00:02:42,976 adding 'pyhmmer/tests/data/tables/t2pks.tbl' 2023-08-21T00:02:42,981 adding 'pyhmmer/tests/test_easel/__init__.py' 2023-08-21T00:02:42,984 adding 'pyhmmer/tests/test_easel/test_alphabet.py' 2023-08-21T00:02:42,987 adding 'pyhmmer/tests/test_easel/test_bitfield.py' 2023-08-21T00:02:42,990 adding 'pyhmmer/tests/test_easel/test_block.py' 2023-08-21T00:02:42,993 adding 'pyhmmer/tests/test_easel/test_gencode.py' 2023-08-21T00:02:42,996 adding 'pyhmmer/tests/test_easel/test_keyhash.py' 2023-08-21T00:02:43,000 adding 'pyhmmer/tests/test_easel/test_matrix.py' 2023-08-21T00:02:43,003 adding 'pyhmmer/tests/test_easel/test_msa.py' 2023-08-21T00:02:43,007 adding 'pyhmmer/tests/test_easel/test_msafile.py' 2023-08-21T00:02:43,010 adding 'pyhmmer/tests/test_easel/test_randomness.py' 2023-08-21T00:02:43,014 adding 'pyhmmer/tests/test_easel/test_sequence.py' 2023-08-21T00:02:43,018 adding 'pyhmmer/tests/test_easel/test_sequencefile.py' 2023-08-21T00:02:43,021 adding 'pyhmmer/tests/test_easel/test_ssi.py' 2023-08-21T00:02:43,025 adding 'pyhmmer/tests/test_easel/test_vector.py' 2023-08-21T00:02:43,030 adding 'pyhmmer/tests/test_plan7/__init__.py' 2023-08-21T00:02:43,032 adding 'pyhmmer/tests/test_plan7/test_background.py' 2023-08-21T00:02:43,036 adding 'pyhmmer/tests/test_plan7/test_block.py' 2023-08-21T00:02:43,040 adding 'pyhmmer/tests/test_plan7/test_builder.py' 2023-08-21T00:02:43,043 adding 'pyhmmer/tests/test_plan7/test_hit.py' 2023-08-21T00:02:43,047 adding 'pyhmmer/tests/test_plan7/test_hmm.py' 2023-08-21T00:02:43,050 adding 'pyhmmer/tests/test_plan7/test_hmmfile.py' 2023-08-21T00:02:43,053 adding 'pyhmmer/tests/test_plan7/test_optimizedprofile.py' 2023-08-21T00:02:43,058 adding 'pyhmmer/tests/test_plan7/test_pipeline.py' 2023-08-21T00:02:43,061 adding 'pyhmmer/tests/test_plan7/test_profile.py' 2023-08-21T00:02:43,066 adding 'pyhmmer/tests/test_plan7/test_tophits.py' 2023-08-21T00:02:43,069 adding 'pyhmmer/tests/test_plan7/test_tracealigner.py' 2023-08-21T00:02:43,072 adding 'pyhmmer/tests/test_plan7/test_traces.py' 2023-08-21T00:02:43,077 adding 'pyhmmer-0.10.2.dist-info/COPYING' 2023-08-21T00:02:43,082 adding 'pyhmmer-0.10.2.dist-info/METADATA' 2023-08-21T00:02:43,084 adding 'pyhmmer-0.10.2.dist-info/WHEEL' 2023-08-21T00:02:43,086 adding 'pyhmmer-0.10.2.dist-info/top_level.txt' 2023-08-21T00:02:43,092 adding 'pyhmmer-0.10.2.dist-info/RECORD' 2023-08-21T00:02:43,386 removing build/bdist.linux-armv7l/wheel 2023-08-21T00:02:43,495 checking whether compiler can build NEON code... yes, with -mfpu=neon 2023-08-21T00:02:43,496 checking whether can be included... yes 2023-08-21T00:02:43,496 checking whether can be included... yes 2023-08-21T00:02:43,497 checking whether can be included... yes 2023-08-21T00:02:43,497 checking whether can be included... yes 2023-08-21T00:02:43,497 checking whether can be included... yes 2023-08-21T00:02:43,498 checking whether can be included... yes 2023-08-21T00:02:43,498 checking whether can be included... yes 2023-08-21T00:02:43,498 checking whether can be included... yes 2023-08-21T00:02:43,499 checking whether can be included... yes 2023-08-21T00:02:43,499 checking whether can be included... yes 2023-08-21T00:02:43,499 checking whether can be included... yes 2023-08-21T00:02:43,500 checking whether can be included... yes 2023-08-21T00:02:43,500 checking whether can be included... yes 2023-08-21T00:02:43,500 checking whether function 'aligned_alloc' is available... yes 2023-08-21T00:02:43,500 checking whether function 'erfc' is available... yes 2023-08-21T00:02:43,501 checking whether function 'getpid' is available... yes 2023-08-21T00:02:43,501 checking whether function '_mm_malloc' is available... no 2023-08-21T00:02:43,501 checking whether function 'popen' is available... yes 2023-08-21T00:02:43,502 checking whether function 'posix_memalign' is available... yes 2023-08-21T00:02:43,502 checking whether function 'strcasecmp' is available... yes 2023-08-21T00:02:43,502 checking whether function 'strsep' is available... yes 2023-08-21T00:02:43,503 checking whether function 'sysconf' is available... yes 2023-08-21T00:02:43,503 checking whether function 'sysctl' is available... yes 2023-08-21T00:02:43,503 checking whether function 'times' is available... yes 2023-08-21T00:02:43,504 checking whether function 'fseeko' is available... yes 2023-08-21T00:02:43,504 checking whether compiler can build NEON code... yes, with -mfpu=neon 2023-08-21T00:02:43,504 checking whether can be included... yes 2023-08-21T00:02:43,505 checking whether can be included... yes 2023-08-21T00:02:43,505 checking whether can be included... yes 2023-08-21T00:02:43,505 checking whether can be included... yes 2023-08-21T00:02:43,506 checking whether can be included... yes 2023-08-21T00:02:43,506 checking whether can be included... yes 2023-08-21T00:02:43,506 checking whether can be included... yes 2023-08-21T00:02:43,507 checking whether can be included... yes 2023-08-21T00:02:43,507 checking whether function 'mkstemp' is available... yes 2023-08-21T00:02:43,507 checking whether function 'popen' is available... yes 2023-08-21T00:02:43,508 checking whether function 'putenv' is available... yes 2023-08-21T00:02:43,508 checking whether function 'strcasecmp' is available... yes 2023-08-21T00:02:43,508 checking whether function 'strsep' is available... yes 2023-08-21T00:02:43,508 checking whether function 'times' is available... yes 2023-08-21T00:02:43,509 checking whether function 'getpid' is available... yes 2023-08-21T00:02:43,509 checking whether function 'sysctl' is available... yes 2023-08-21T00:02:43,509 checking whether function 'sysconf' is available... yes 2023-08-21T00:02:43,510 checking whether function 'getcwd' is available... yes 2023-08-21T00:02:43,510 checking whether function 'chmod' is available... yes 2023-08-21T00:02:43,510 checking whether function 'stat' is available... yes 2023-08-21T00:02:43,510 checking whether function 'fstat' is available... yes 2023-08-21T00:02:43,511 checking whether function 'erfc' is available... yes 2023-08-21T00:02:43,511 Building HMMER with NEON for CPU architecture: 'armv7l' 2023-08-21T00:02:43,511 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:13:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,512 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:17:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,512 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:18:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,512 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:19:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,512 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:40:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,513 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:47:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,513 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:52:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,513 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:13:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,514 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:17:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,514 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:18:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,514 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:19:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,515 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:40:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,515 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:47:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,515 warning: include/libhmmer/impl_neon/p7_oprofile.pxd:52:4: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310 2023-08-21T00:02:43,516 checking whether `PyInterpreterState_GetID` is available 2023-08-21T00:02:43,516 yes 2023-08-21T00:02:43,516 building pyhmmer.errors for linux-armv7l with unix compiler 2023-08-21T00:02:43,517 building pyhmmer.easel for linux-armv7l with unix compiler 2023-08-21T00:02:43,517 building pyhmmer.plan7 for linux-armv7l with unix compiler 2023-08-21T00:02:43,517 building pyhmmer.daemon for linux-armv7l with unix compiler 2023-08-21T00:02:46,076 Building wheel for pyhmmer (pyproject.toml): finished with status 'done' 2023-08-21T00:02:46,844 Created wheel for pyhmmer: filename=pyhmmer-0.10.2-cp37-cp37m-linux_armv7l.whl size=12358088 sha256=fc130f57db7a3d251396d47c0b65f851a8649efe849c1b5fe6edf1d7584fe510 2023-08-21T00:02:46,847 Stored in directory: /tmp/pip-ephem-wheel-cache-1jtsdt7j/wheels/90/fa/6f/fe217f452397705302a7a7018d30adabe2e0be8f2e205e1a9f 2023-08-21T00:02:46,904 Successfully built pyhmmer 2023-08-21T00:02:47,849 Removed build tracker: '/tmp/pip-build-tracker-74oabdzg'