2023-08-28T10:58:48,397 Created temporary directory: /tmp/pip-build-tracker-c969cuvu
2023-08-28T10:58:48,400 Initialized build tracking at /tmp/pip-build-tracker-c969cuvu
2023-08-28T10:58:48,400 Created build tracker: /tmp/pip-build-tracker-c969cuvu
2023-08-28T10:58:48,401 Entered build tracker: /tmp/pip-build-tracker-c969cuvu
2023-08-28T10:58:48,402 Created temporary directory: /tmp/pip-wheel-38eodnwc
2023-08-28T10:58:48,411 Created temporary directory: /tmp/pip-ephem-wheel-cache-f9nxlpk7
2023-08-28T10:58:48,469 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-08-28T10:58:48,478 2 location(s) to search for versions of maginator:
2023-08-28T10:58:48,478 * https://pypi.org/simple/maginator/
2023-08-28T10:58:48,478 * https://www.piwheels.org/simple/maginator/
2023-08-28T10:58:48,479 Fetching project page and analyzing links: https://pypi.org/simple/maginator/
2023-08-28T10:58:48,480 Getting page https://pypi.org/simple/maginator/
2023-08-28T10:58:48,484 Found index url https://pypi.org/simple/
2023-08-28T10:58:48,670 Fetched page https://pypi.org/simple/maginator/ as application/vnd.pypi.simple.v1+json
2023-08-28T10:58:48,675   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/28/10/ecccd562aaffc3f6d204d7204aec58c58d9a9f6af3ade5cc175db4537a5b/maginator-0.1.8-py3.7.egg (from https://pypi.org/simple/maginator/) (requires-python:>=3.5)
2023-08-28T10:58:48,677   Found link https://files.pythonhosted.org/packages/b2/0e/e9f8fab4868fdbeac8e0d4e20739b76094430d0359620da63f5fae1ebb9d/maginator-0.1.8.tar.gz (from https://pypi.org/simple/maginator/) (requires-python:>=3.5), version: 0.1.8
2023-08-28T10:58:48,677   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/33/51/ffee33c05503c602c0583f3968e3e63cde50489be8d9a80e43f0a17d4d29/maginator-0.1.13-py3.10.egg (from https://pypi.org/simple/maginator/) (requires-python:>=3.5)
2023-08-28T10:58:48,679   Found link https://files.pythonhosted.org/packages/27/d1/d8b739151ffea3e1dec7103e89dd35113f0bf883897372ab3e92837495a7/maginator-0.1.13.tar.gz (from https://pypi.org/simple/maginator/) (requires-python:>=3.5), version: 0.1.13
2023-08-28T10:58:48,681   Found link https://files.pythonhosted.org/packages/c2/3a/bd37a8cd702b674447ca27c5ca1dc197a99f6be8aa53040d244a065517c6/maginator-0.1.17.tar.gz (from https://pypi.org/simple/maginator/) (requires-python:>=3.5), version: 0.1.17
2023-08-28T10:58:48,681   Skipping link: No binaries permitted for maginator: https://files.pythonhosted.org/packages/c5/43/3eb04ddfd26ab3354a5c5f932f35c600b8bcd92271c1410115a08bf91fd8/maginator-0.1.18-py3-none-any.whl (from https://pypi.org/simple/maginator/) (requires-python:>=3.5)
2023-08-28T10:58:48,682   Found link https://files.pythonhosted.org/packages/34/a6/760a35922ab75b39d27477cc808a5eb9dfe02817dc51bd2fbaf5b2a7d0c6/maginator-0.1.18.tar.gz (from https://pypi.org/simple/maginator/) (requires-python:>=3.5), version: 0.1.18
2023-08-28T10:58:48,683 Fetching project page and analyzing links: https://www.piwheels.org/simple/maginator/
2023-08-28T10:58:48,684 Getting page https://www.piwheels.org/simple/maginator/
2023-08-28T10:58:48,686 Found index url https://www.piwheels.org/simple/
2023-08-28T10:58:48,910 Fetched page https://www.piwheels.org/simple/maginator/ as text/html
2023-08-28T10:58:48,914   Skipping link: No binaries permitted for maginator: https://www.piwheels.org/simple/maginator/maginator-0.1.17-py3-none-any.whl#sha256=c32d9436f952d95cdff5c8d474120637206df09332600e133f13419537cbd806 (from https://www.piwheels.org/simple/maginator/) (requires-python:>=3.5)
2023-08-28T10:58:48,915   Skipping link: No binaries permitted for maginator: https://www.piwheels.org/simple/maginator/maginator-0.1.13-py3-none-any.whl#sha256=bd4768ce02f00c01217d7adf241aad0ee1e1cc23c8f69a5a89be3d521b65b505 (from https://www.piwheels.org/simple/maginator/) (requires-python:>=3.5)
2023-08-28T10:58:48,915   Skipping link: No binaries permitted for maginator: https://www.piwheels.org/simple/maginator/maginator-0.1.8-py3-none-any.whl#sha256=cb0efbdc1f46362c03b97cd18b7dd860d2dcc0f4ad09fc15f7d688be7194ff51 (from https://www.piwheels.org/simple/maginator/) (requires-python:>=3.5)
2023-08-28T10:58:48,916 Skipping link: not a file: https://www.piwheels.org/simple/maginator/
2023-08-28T10:58:48,916 Skipping link: not a file: https://pypi.org/simple/maginator/
2023-08-28T10:58:48,950 Given no hashes to check 1 links for project 'maginator': discarding no candidates
2023-08-28T10:58:48,985 Collecting maginator==0.1.18
2023-08-28T10:58:48,989   Created temporary directory: /tmp/pip-unpack-idu_czop
2023-08-28T10:58:49,166   Downloading maginator-0.1.18.tar.gz (49 kB)
2023-08-28T10:58:49,445   Added maginator==0.1.18 from https://files.pythonhosted.org/packages/34/a6/760a35922ab75b39d27477cc808a5eb9dfe02817dc51bd2fbaf5b2a7d0c6/maginator-0.1.18.tar.gz to build tracker '/tmp/pip-build-tracker-c969cuvu'
2023-08-28T10:58:49,449   Running setup.py (path:/tmp/pip-wheel-38eodnwc/maginator_40b077b5c36541d283a6b85f6ae9404f/setup.py) egg_info for package maginator
2023-08-28T10:58:49,451   Created temporary directory: /tmp/pip-pip-egg-info-280s5c13
2023-08-28T10:58:49,452   Preparing metadata (setup.py): started
2023-08-28T10:58:49,454   Running command python setup.py egg_info
2023-08-28T10:58:51,124   running egg_info
2023-08-28T10:58:51,126   creating /tmp/pip-pip-egg-info-280s5c13/maginator.egg-info
2023-08-28T10:58:51,213   writing /tmp/pip-pip-egg-info-280s5c13/maginator.egg-info/PKG-INFO
2023-08-28T10:58:51,220   writing dependency_links to /tmp/pip-pip-egg-info-280s5c13/maginator.egg-info/dependency_links.txt
2023-08-28T10:58:51,224   writing entry points to /tmp/pip-pip-egg-info-280s5c13/maginator.egg-info/entry_points.txt
2023-08-28T10:58:51,226   writing requirements to /tmp/pip-pip-egg-info-280s5c13/maginator.egg-info/requires.txt
2023-08-28T10:58:51,228   writing top-level names to /tmp/pip-pip-egg-info-280s5c13/maginator.egg-info/top_level.txt
2023-08-28T10:58:51,232   writing manifest file '/tmp/pip-pip-egg-info-280s5c13/maginator.egg-info/SOURCES.txt'
2023-08-28T10:58:51,506   reading manifest file '/tmp/pip-pip-egg-info-280s5c13/maginator.egg-info/SOURCES.txt'
2023-08-28T10:58:51,509   reading manifest template 'MANIFEST.in'
2023-08-28T10:58:51,542   adding license file 'LICENSE'
2023-08-28T10:58:51,551   writing manifest file '/tmp/pip-pip-egg-info-280s5c13/maginator.egg-info/SOURCES.txt'
2023-08-28T10:58:51,673   Preparing metadata (setup.py): finished with status 'done'
2023-08-28T10:58:51,687   Source in /tmp/pip-wheel-38eodnwc/maginator_40b077b5c36541d283a6b85f6ae9404f has version 0.1.18, which satisfies requirement maginator==0.1.18 from https://files.pythonhosted.org/packages/34/a6/760a35922ab75b39d27477cc808a5eb9dfe02817dc51bd2fbaf5b2a7d0c6/maginator-0.1.18.tar.gz
2023-08-28T10:58:51,689   Removed maginator==0.1.18 from https://files.pythonhosted.org/packages/34/a6/760a35922ab75b39d27477cc808a5eb9dfe02817dc51bd2fbaf5b2a7d0c6/maginator-0.1.18.tar.gz from build tracker '/tmp/pip-build-tracker-c969cuvu'
2023-08-28T10:58:51,706 Created temporary directory: /tmp/pip-unpack-63igakse
2023-08-28T10:58:51,707 Building wheels for collected packages: maginator
2023-08-28T10:58:51,716   Created temporary directory: /tmp/pip-wheel-65jm9quo
2023-08-28T10:58:51,717   Building wheel for maginator (setup.py): started
2023-08-28T10:58:51,719   Destination directory: /tmp/pip-wheel-65jm9quo
2023-08-28T10:58:51,720   Running command python setup.py bdist_wheel
2023-08-28T10:58:53,416   running bdist_wheel
2023-08-28T10:58:54,227   running build
2023-08-28T10:58:54,228   running build_py
2023-08-28T10:58:54,322   creating build
2023-08-28T10:58:54,322   creating build/lib
2023-08-28T10:58:54,324   creating build/lib/maginator
2023-08-28T10:58:54,326   copying maginator/main.py -> build/lib/maginator
2023-08-28T10:58:54,331   copying maginator/messages.py -> build/lib/maginator
2023-08-28T10:58:54,335   copying maginator/__init__.py -> build/lib/maginator
2023-08-28T10:58:54,338   copying maginator/controller.py -> build/lib/maginator
2023-08-28T10:58:54,343   copying maginator/workflow.py -> build/lib/maginator
2023-08-28T10:58:54,346   running egg_info
2023-08-28T10:58:54,540   writing maginator.egg-info/PKG-INFO
2023-08-28T10:58:54,545   writing dependency_links to maginator.egg-info/dependency_links.txt
2023-08-28T10:58:54,549   writing entry points to maginator.egg-info/entry_points.txt
2023-08-28T10:58:54,552   writing requirements to maginator.egg-info/requires.txt
2023-08-28T10:58:54,554   writing top-level names to maginator.egg-info/top_level.txt
2023-08-28T10:58:54,658   reading manifest file 'maginator.egg-info/SOURCES.txt'
2023-08-28T10:58:54,671   reading manifest template 'MANIFEST.in'
2023-08-28T10:58:54,704   adding license file 'LICENSE'
2023-08-28T10:58:54,714   writing manifest file 'maginator.egg-info/SOURCES.txt'
2023-08-28T10:58:54,720   /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'maginator.workflow' is absent from the `packages` configuration.
2023-08-28T10:58:54,720   !!

2023-08-28T10:58:54,721           ********************************************************************************
2023-08-28T10:58:54,721           ############################
2023-08-28T10:58:54,722           # Package would be ignored #
2023-08-28T10:58:54,722           ############################
2023-08-28T10:58:54,722           Python recognizes 'maginator.workflow' as an importable package[^1],
2023-08-28T10:58:54,723           but it is absent from setuptools' `packages` configuration.

2023-08-28T10:58:54,723           This leads to an ambiguous overall configuration. If you want to distribute this
2023-08-28T10:58:54,724           package, please make sure that 'maginator.workflow' is explicitly added
2023-08-28T10:58:54,724           to the `packages` configuration field.

2023-08-28T10:58:54,724           Alternatively, you can also rely on setuptools' discovery methods
2023-08-28T10:58:54,725           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-08-28T10:58:54,725           instead of `find_packages(...)`/`find:`).

2023-08-28T10:58:54,726           You can read more about "package discovery" on setuptools documentation page:

2023-08-28T10:58:54,726           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-08-28T10:58:54,727           If you don't want 'maginator.workflow' to be distributed and are
2023-08-28T10:58:54,727           already explicitly excluding 'maginator.workflow' via
2023-08-28T10:58:54,727           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-08-28T10:58:54,728           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-08-28T10:58:54,728           combination with a more fine grained `package-data` configuration.

2023-08-28T10:58:54,729           You can read more about "package data files" on setuptools documentation page:

2023-08-28T10:58:54,729           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-08-28T10:58:54,730           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-08-28T10:58:54,731                 even if it does not contain any `.py` files.
2023-08-28T10:58:54,731                 On the other hand, currently there is no concept of package data
2023-08-28T10:58:54,731                 directory, all directories are treated like packages.
2023-08-28T10:58:54,732           ********************************************************************************

2023-08-28T10:58:54,732   !!
2023-08-28T10:58:54,732     check.warn(importable)
2023-08-28T10:58:54,733   /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'maginator.workflow.envs' is absent from the `packages` configuration.
2023-08-28T10:58:54,733   !!

2023-08-28T10:58:54,734           ********************************************************************************
2023-08-28T10:58:54,734           ############################
2023-08-28T10:58:54,734           # Package would be ignored #
2023-08-28T10:58:54,735           ############################
2023-08-28T10:58:54,735           Python recognizes 'maginator.workflow.envs' as an importable package[^1],
2023-08-28T10:58:54,735           but it is absent from setuptools' `packages` configuration.

2023-08-28T10:58:54,736           This leads to an ambiguous overall configuration. If you want to distribute this
2023-08-28T10:58:54,736           package, please make sure that 'maginator.workflow.envs' is explicitly added
2023-08-28T10:58:54,737           to the `packages` configuration field.

2023-08-28T10:58:54,737           Alternatively, you can also rely on setuptools' discovery methods
2023-08-28T10:58:54,738           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-08-28T10:58:54,738           instead of `find_packages(...)`/`find:`).

2023-08-28T10:58:54,739           You can read more about "package discovery" on setuptools documentation page:

2023-08-28T10:58:54,740           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-08-28T10:58:54,741           If you don't want 'maginator.workflow.envs' to be distributed and are
2023-08-28T10:58:54,741           already explicitly excluding 'maginator.workflow.envs' via
2023-08-28T10:58:54,741           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-08-28T10:58:54,742           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-08-28T10:58:54,743           combination with a more fine grained `package-data` configuration.

2023-08-28T10:58:54,743           You can read more about "package data files" on setuptools documentation page:

2023-08-28T10:58:54,744           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-08-28T10:58:54,745           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-08-28T10:58:54,746                 even if it does not contain any `.py` files.
2023-08-28T10:58:54,746                 On the other hand, currently there is no concept of package data
2023-08-28T10:58:54,747                 directory, all directories are treated like packages.
2023-08-28T10:58:54,747           ********************************************************************************

2023-08-28T10:58:54,748   !!
2023-08-28T10:58:54,748     check.warn(importable)
2023-08-28T10:58:54,749   /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'maginator.workflow.scripts' is absent from the `packages` configuration.
2023-08-28T10:58:54,749   !!

2023-08-28T10:58:54,750           ********************************************************************************
2023-08-28T10:58:54,750           ############################
2023-08-28T10:58:54,751           # Package would be ignored #
2023-08-28T10:58:54,751           ############################
2023-08-28T10:58:54,752           Python recognizes 'maginator.workflow.scripts' as an importable package[^1],
2023-08-28T10:58:54,752           but it is absent from setuptools' `packages` configuration.

2023-08-28T10:58:54,753           This leads to an ambiguous overall configuration. If you want to distribute this
2023-08-28T10:58:54,753           package, please make sure that 'maginator.workflow.scripts' is explicitly added
2023-08-28T10:58:54,754           to the `packages` configuration field.

2023-08-28T10:58:54,754           Alternatively, you can also rely on setuptools' discovery methods
2023-08-28T10:58:54,755           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-08-28T10:58:54,755           instead of `find_packages(...)`/`find:`).

2023-08-28T10:58:54,756           You can read more about "package discovery" on setuptools documentation page:

2023-08-28T10:58:54,757           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-08-28T10:58:54,758           If you don't want 'maginator.workflow.scripts' to be distributed and are
2023-08-28T10:58:54,758           already explicitly excluding 'maginator.workflow.scripts' via
2023-08-28T10:58:54,759           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-08-28T10:58:54,759           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-08-28T10:58:54,759           combination with a more fine grained `package-data` configuration.

2023-08-28T10:58:54,760           You can read more about "package data files" on setuptools documentation page:

2023-08-28T10:58:54,761           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-08-28T10:58:54,762           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-08-28T10:58:54,763                 even if it does not contain any `.py` files.
2023-08-28T10:58:54,763                 On the other hand, currently there is no concept of package data
2023-08-28T10:58:54,764                 directory, all directories are treated like packages.
2023-08-28T10:58:54,764           ********************************************************************************

2023-08-28T10:58:54,765   !!
2023-08-28T10:58:54,765     check.warn(importable)
2023-08-28T10:58:54,766   creating build/lib/maginator/workflow
2023-08-28T10:58:54,766   copying maginator/workflow/alignment.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,767   copying maginator/workflow/filter.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,767   copying maginator/workflow/filter_geneclusters.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,768   copying maginator/workflow/gene_count_mat.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,768   copying maginator/workflow/gene_tax.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,768   copying maginator/workflow/gtdbtk.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,769   copying maginator/workflow/outgroup.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,773   copying maginator/workflow/parse_gtdbtk.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,777   copying maginator/workflow/phylo.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,782   copying maginator/workflow/pileup.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,786   copying maginator/workflow/pileup_parse.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,790   copying maginator/workflow/prescreening_genes.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,794   copying maginator/workflow/reads_to_bins.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,800   copying maginator/workflow/signature_genes.Snakefile -> build/lib/maginator/workflow
2023-08-28T10:58:54,804   creating build/lib/maginator/workflow/envs
2023-08-28T10:58:54,806   copying maginator/workflow/envs/filter_geneclusters.yaml -> build/lib/maginator/workflow/envs
2023-08-28T10:58:54,810   copying maginator/workflow/envs/filter_gtdbtk.yaml -> build/lib/maginator/workflow/envs
2023-08-28T10:58:54,814   copying maginator/workflow/envs/phylo.yaml -> build/lib/maginator/workflow/envs
2023-08-28T10:58:54,819   copying maginator/workflow/envs/signature_genes.yaml -> build/lib/maginator/workflow/envs
2023-08-28T10:58:54,823   creating build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,825   copying maginator/workflow/scripts/Functions_v4.R -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,830   copying maginator/workflow/scripts/MGS_counts.R -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,834   copying maginator/workflow/scripts/SG_refinement.R -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,839   copying maginator/workflow/scripts/abundance_profiles.R -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,844   copying maginator/workflow/scripts/concat.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,848   copying maginator/workflow/scripts/filter.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,853   copying maginator/workflow/scripts/gene_cluster2tax.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,857   copying maginator/workflow/scripts/gene_refinement_plots.R -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,862   copying maginator/workflow/scripts/marker_genes.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,868   copying maginator/workflow/scripts/matrix2SG_formatconversion.R -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,872   copying maginator/workflow/scripts/mpileup.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,879   copying maginator/workflow/scripts/parse_gtdbtk.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,884   copying maginator/workflow/scripts/prescreening_genes.R -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,889   copying maginator/workflow/scripts/sort_gene_mat.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,894   copying maginator/workflow/scripts/species_collections.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:54,898   copying maginator/workflow/scripts/synteny.py -> build/lib/maginator/workflow/scripts
2023-08-28T10:58:55,000   /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-08-28T10:58:55,000   !!

2023-08-28T10:58:55,001           ********************************************************************************
2023-08-28T10:58:55,001           Please avoid running ``setup.py`` directly.
2023-08-28T10:58:55,002           Instead, use pypa/build, pypa/installer, pypa/build or
2023-08-28T10:58:55,002           other standards-based tools.

2023-08-28T10:58:55,003           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-08-28T10:58:55,003           ********************************************************************************

2023-08-28T10:58:55,004   !!
2023-08-28T10:58:55,004     self.initialize_options()
2023-08-28T10:58:55,091   installing to build/bdist.linux-armv7l/wheel
2023-08-28T10:58:55,091   running install
2023-08-28T10:58:55,153   running install_lib
2023-08-28T10:58:55,247   creating build/bdist.linux-armv7l
2023-08-28T10:58:55,248   creating build/bdist.linux-armv7l/wheel
2023-08-28T10:58:55,252   creating build/bdist.linux-armv7l/wheel/maginator
2023-08-28T10:58:55,254   copying build/lib/maginator/main.py -> build/bdist.linux-armv7l/wheel/maginator
2023-08-28T10:58:55,260   copying build/lib/maginator/messages.py -> build/bdist.linux-armv7l/wheel/maginator
2023-08-28T10:58:55,264   copying build/lib/maginator/__init__.py -> build/bdist.linux-armv7l/wheel/maginator
2023-08-28T10:58:55,268   copying build/lib/maginator/controller.py -> build/bdist.linux-armv7l/wheel/maginator
2023-08-28T10:58:55,274   creating build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,276   copying build/lib/maginator/workflow/parse_gtdbtk.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,280   copying build/lib/maginator/workflow/filter_geneclusters.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,284   copying build/lib/maginator/workflow/pileup_parse.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,289   creating build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,291   copying build/lib/maginator/workflow/scripts/SG_refinement.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,296   copying build/lib/maginator/workflow/scripts/marker_genes.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,301   copying build/lib/maginator/workflow/scripts/matrix2SG_formatconversion.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,304   copying build/lib/maginator/workflow/scripts/sort_gene_mat.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,308   copying build/lib/maginator/workflow/scripts/gene_cluster2tax.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,312   copying build/lib/maginator/workflow/scripts/synteny.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,316   copying build/lib/maginator/workflow/scripts/Functions_v4.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,321   copying build/lib/maginator/workflow/scripts/MGS_counts.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,324   copying build/lib/maginator/workflow/scripts/prescreening_genes.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,328   copying build/lib/maginator/workflow/scripts/parse_gtdbtk.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,332   copying build/lib/maginator/workflow/scripts/concat.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,336   copying build/lib/maginator/workflow/scripts/abundance_profiles.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,341   copying build/lib/maginator/workflow/scripts/gene_refinement_plots.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,345   copying build/lib/maginator/workflow/scripts/mpileup.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,350   copying build/lib/maginator/workflow/scripts/filter.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,354   copying build/lib/maginator/workflow/scripts/species_collections.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2023-08-28T10:58:55,358   copying build/lib/maginator/workflow/phylo.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,362   copying build/lib/maginator/workflow/gene_tax.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,366   copying build/lib/maginator/workflow/filter.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,369   copying build/lib/maginator/workflow/outgroup.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,373   copying build/lib/maginator/workflow/reads_to_bins.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,379   creating build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2023-08-28T10:58:55,381   copying build/lib/maginator/workflow/envs/signature_genes.yaml -> build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2023-08-28T10:58:55,385   copying build/lib/maginator/workflow/envs/filter_geneclusters.yaml -> build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2023-08-28T10:58:55,389   copying build/lib/maginator/workflow/envs/filter_gtdbtk.yaml -> build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2023-08-28T10:58:55,393   copying build/lib/maginator/workflow/envs/phylo.yaml -> build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2023-08-28T10:58:55,396   copying build/lib/maginator/workflow/gtdbtk.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,400   copying build/lib/maginator/workflow/gene_count_mat.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,403   copying build/lib/maginator/workflow/prescreening_genes.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,407   copying build/lib/maginator/workflow/alignment.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,411   copying build/lib/maginator/workflow/pileup.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,415   copying build/lib/maginator/workflow/signature_genes.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2023-08-28T10:58:55,418   copying build/lib/maginator/workflow.py -> build/bdist.linux-armv7l/wheel/maginator
2023-08-28T10:58:55,422   running install_egg_info
2023-08-28T10:58:55,522   Copying maginator.egg-info to build/bdist.linux-armv7l/wheel/maginator-0.1.18-py3.7.egg-info
2023-08-28T10:58:55,553   running install_scripts
2023-08-28T10:58:55,589   creating build/bdist.linux-armv7l/wheel/maginator-0.1.18.dist-info/WHEEL
2023-08-28T10:58:55,596   creating '/tmp/pip-wheel-65jm9quo/maginator-0.1.18-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-08-28T10:58:55,601   adding 'maginator/__init__.py'
2023-08-28T10:58:55,604   adding 'maginator/controller.py'
2023-08-28T10:58:55,608   adding 'maginator/main.py'
2023-08-28T10:58:55,612   adding 'maginator/messages.py'
2023-08-28T10:58:55,615   adding 'maginator/workflow.py'
2023-08-28T10:58:55,619   adding 'maginator/workflow/alignment.Snakefile'
2023-08-28T10:58:55,622   adding 'maginator/workflow/filter.Snakefile'
2023-08-28T10:58:55,625   adding 'maginator/workflow/filter_geneclusters.Snakefile'
2023-08-28T10:58:55,628   adding 'maginator/workflow/gene_count_mat.Snakefile'
2023-08-28T10:58:55,631   adding 'maginator/workflow/gene_tax.Snakefile'
2023-08-28T10:58:55,634   adding 'maginator/workflow/gtdbtk.Snakefile'
2023-08-28T10:58:55,637   adding 'maginator/workflow/outgroup.Snakefile'
2023-08-28T10:58:55,640   adding 'maginator/workflow/parse_gtdbtk.Snakefile'
2023-08-28T10:58:55,642   adding 'maginator/workflow/phylo.Snakefile'
2023-08-28T10:58:55,645   adding 'maginator/workflow/pileup.Snakefile'
2023-08-28T10:58:55,648   adding 'maginator/workflow/pileup_parse.Snakefile'
2023-08-28T10:58:55,651   adding 'maginator/workflow/prescreening_genes.Snakefile'
2023-08-28T10:58:55,656   adding 'maginator/workflow/reads_to_bins.Snakefile'
2023-08-28T10:58:55,659   adding 'maginator/workflow/signature_genes.Snakefile'
2023-08-28T10:58:55,662   adding 'maginator/workflow/envs/filter_geneclusters.yaml'
2023-08-28T10:58:55,665   adding 'maginator/workflow/envs/filter_gtdbtk.yaml'
2023-08-28T10:58:55,667   adding 'maginator/workflow/envs/phylo.yaml'
2023-08-28T10:58:55,670   adding 'maginator/workflow/envs/signature_genes.yaml'
2023-08-28T10:58:55,675   adding 'maginator/workflow/scripts/Functions_v4.R'
2023-08-28T10:58:55,678   adding 'maginator/workflow/scripts/MGS_counts.R'
2023-08-28T10:58:55,683   adding 'maginator/workflow/scripts/SG_refinement.R'
2023-08-28T10:58:55,686   adding 'maginator/workflow/scripts/abundance_profiles.R'
2023-08-28T10:58:55,689   adding 'maginator/workflow/scripts/concat.py'
2023-08-28T10:58:55,692   adding 'maginator/workflow/scripts/filter.py'
2023-08-28T10:58:55,695   adding 'maginator/workflow/scripts/gene_cluster2tax.py'
2023-08-28T10:58:55,699   adding 'maginator/workflow/scripts/gene_refinement_plots.R'
2023-08-28T10:58:55,703   adding 'maginator/workflow/scripts/marker_genes.py'
2023-08-28T10:58:55,706   adding 'maginator/workflow/scripts/matrix2SG_formatconversion.R'
2023-08-28T10:58:55,713   adding 'maginator/workflow/scripts/mpileup.py'
2023-08-28T10:58:55,717   adding 'maginator/workflow/scripts/parse_gtdbtk.py'
2023-08-28T10:58:55,720   adding 'maginator/workflow/scripts/prescreening_genes.R'
2023-08-28T10:58:55,723   adding 'maginator/workflow/scripts/sort_gene_mat.py'
2023-08-28T10:58:55,726   adding 'maginator/workflow/scripts/species_collections.py'
2023-08-28T10:58:55,729   adding 'maginator/workflow/scripts/synteny.py'
2023-08-28T10:58:55,734   adding 'maginator-0.1.18.dist-info/LICENSE'
2023-08-28T10:58:55,738   adding 'maginator-0.1.18.dist-info/METADATA'
2023-08-28T10:58:55,741   adding 'maginator-0.1.18.dist-info/WHEEL'
2023-08-28T10:58:55,743   adding 'maginator-0.1.18.dist-info/entry_points.txt'
2023-08-28T10:58:55,745   adding 'maginator-0.1.18.dist-info/top_level.txt'
2023-08-28T10:58:55,748   adding 'maginator-0.1.18.dist-info/RECORD'
2023-08-28T10:58:55,753   removing build/bdist.linux-armv7l/wheel
2023-08-28T10:58:55,933   Building wheel for maginator (setup.py): finished with status 'done'
2023-08-28T10:58:55,943   Created wheel for maginator: filename=maginator-0.1.18-py3-none-any.whl size=60682 sha256=0114e0d1fe603c8a8422259d735ba660898badb22a1a55852879dd7e245a0bf6
2023-08-28T10:58:55,945   Stored in directory: /tmp/pip-ephem-wheel-cache-f9nxlpk7/wheels/cb/97/a5/efad5bdfae953a1d1efe047cac39a200571e75a29663b0d375
2023-08-28T10:58:55,976 Successfully built maginator
2023-08-28T10:58:55,987 Removed build tracker: '/tmp/pip-build-tracker-c969cuvu'