2023-08-28T14:03:24,868 Created temporary directory: /tmp/pip-build-tracker-7gd_rw_t 2023-08-28T14:03:24,871 Initialized build tracking at /tmp/pip-build-tracker-7gd_rw_t 2023-08-28T14:03:24,872 Created build tracker: /tmp/pip-build-tracker-7gd_rw_t 2023-08-28T14:03:24,872 Entered build tracker: /tmp/pip-build-tracker-7gd_rw_t 2023-08-28T14:03:24,873 Created temporary directory: /tmp/pip-wheel-g1kik6bu 2023-08-28T14:03:24,882 Created temporary directory: /tmp/pip-ephem-wheel-cache-gj1wcm5f 2023-08-28T14:03:24,934 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-28T14:03:24,942 2 location(s) to search for versions of seldompy: 2023-08-28T14:03:24,942 * https://pypi.org/simple/seldompy/ 2023-08-28T14:03:24,942 * https://www.piwheels.org/simple/seldompy/ 2023-08-28T14:03:24,943 Fetching project page and analyzing links: https://pypi.org/simple/seldompy/ 2023-08-28T14:03:24,944 Getting page https://pypi.org/simple/seldompy/ 2023-08-28T14:03:24,949 Found index url https://pypi.org/simple/ 2023-08-28T14:03:25,135 Fetched page https://pypi.org/simple/seldompy/ as application/vnd.pypi.simple.v1+json 2023-08-28T14:03:25,140 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/15/1e/e2ffb54d95eb04e2c11dd109754fe19e290c4a9ab4e2bf2a57159a503d92/SELDOMpy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-08-28T14:03:25,141 Found link https://files.pythonhosted.org/packages/e0/c2/eba2f28b595340f8c4010ea35a809f50d6b8bace971105cf2300bbbc0ce7/SELDOMpy-0.9.8.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.8 2023-08-28T14:03:25,141 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cf/fd/55148fcbd4b491569b925910992a7dbfb4cf630ee94833bee16e50f9e330/SELDOMpy-0.9.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-08-28T14:03:25,142 Found link https://files.pythonhosted.org/packages/00/23/70aa2c3b7b7acaec975e9932bd8c6f75c84068615791d7ec9e8d050db099/SELDOMpy-0.9.9.tar.gz (from https://pypi.org/simple/seldompy/), version: 0.9.9 2023-08-28T14:03:25,143 Skipping link: No binaries permitted for seldompy: https://files.pythonhosted.org/packages/cb/fd/951ae4a46031bbbf8524e54e3d416b1b1485eef99d01efccc8bed8d19443/SELDOMpy-1.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/seldompy/) 2023-08-28T14:03:25,143 Found link https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz (from https://pypi.org/simple/seldompy/), version: 1.0 2023-08-28T14:03:25,144 Fetching project page and analyzing links: https://www.piwheels.org/simple/seldompy/ 2023-08-28T14:03:25,145 Getting page https://www.piwheels.org/simple/seldompy/ 2023-08-28T14:03:25,147 Found index url https://www.piwheels.org/simple/ 2023-08-28T14:03:29,524 Fetched page https://www.piwheels.org/simple/seldompy/ as text/html 2023-08-28T14:03:29,526 Skipping link: not a file: https://www.piwheels.org/simple/seldompy/ 2023-08-28T14:03:29,526 Skipping link: not a file: https://pypi.org/simple/seldompy/ 2023-08-28T14:03:29,559 Given no hashes to check 1 links for project 'seldompy': discarding no candidates 2023-08-28T14:03:29,590 Collecting seldompy==1.0 2023-08-28T14:03:29,594 Created temporary directory: /tmp/pip-unpack-y5rf2m9b 2023-08-28T14:03:29,774 Downloading SELDOMpy-1.0.tar.gz (260 kB) 2023-08-28T14:03:30,485 Added seldompy==1.0 from https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz to build tracker '/tmp/pip-build-tracker-7gd_rw_t' 2023-08-28T14:03:30,488 Running setup.py (path:/tmp/pip-wheel-g1kik6bu/seldompy_f843da5e2abb45078039185bc8779833/setup.py) egg_info for package seldompy 2023-08-28T14:03:30,489 Created temporary directory: /tmp/pip-pip-egg-info-g2u8y5ev 2023-08-28T14:03:30,490 Preparing metadata (setup.py): started 2023-08-28T14:03:30,492 Running command python setup.py egg_info 2023-08-28T14:03:32,724 running egg_info 2023-08-28T14:03:32,727 creating /tmp/pip-pip-egg-info-g2u8y5ev/SELDOMpy.egg-info 2023-08-28T14:03:32,805 writing /tmp/pip-pip-egg-info-g2u8y5ev/SELDOMpy.egg-info/PKG-INFO 2023-08-28T14:03:32,810 writing dependency_links to /tmp/pip-pip-egg-info-g2u8y5ev/SELDOMpy.egg-info/dependency_links.txt 2023-08-28T14:03:32,815 writing requirements to /tmp/pip-pip-egg-info-g2u8y5ev/SELDOMpy.egg-info/requires.txt 2023-08-28T14:03:32,817 writing top-level names to /tmp/pip-pip-egg-info-g2u8y5ev/SELDOMpy.egg-info/top_level.txt 2023-08-28T14:03:32,820 writing manifest file '/tmp/pip-pip-egg-info-g2u8y5ev/SELDOMpy.egg-info/SOURCES.txt' 2023-08-28T14:03:33,685 reading manifest file '/tmp/pip-pip-egg-info-g2u8y5ev/SELDOMpy.egg-info/SOURCES.txt' 2023-08-28T14:03:33,688 reading manifest template 'MANIFEST.in' 2023-08-28T14:03:33,707 adding license file 'LICENSE.txt' 2023-08-28T14:03:33,722 writing manifest file '/tmp/pip-pip-egg-info-g2u8y5ev/SELDOMpy.egg-info/SOURCES.txt' 2023-08-28T14:03:33,724 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-28T14:03:33,725 !! 2023-08-28T14:03:33,726 ******************************************************************************** 2023-08-28T14:03:33,726 Usage of dash-separated 'description-file' will not be supported in future 2023-08-28T14:03:33,726 versions. Please use the underscore name 'description_file' instead. 2023-08-28T14:03:33,727 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-28T14:03:33,728 or your builds will no longer be supported. 2023-08-28T14:03:33,729 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-28T14:03:33,729 ******************************************************************************** 2023-08-28T14:03:33,730 !! 2023-08-28T14:03:33,731 opt = self.warn_dash_deprecation(opt, section) 2023-08-28T14:03:33,909 Preparing metadata (setup.py): finished with status 'done' 2023-08-28T14:03:33,923 Source in /tmp/pip-wheel-g1kik6bu/seldompy_f843da5e2abb45078039185bc8779833 has version 1.0, which satisfies requirement seldompy==1.0 from https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz 2023-08-28T14:03:33,925 Removed seldompy==1.0 from https://files.pythonhosted.org/packages/ed/8c/d56a9dc40587ae6bfce50954f024f71864d3fe9604d0c4200cc5704f5688/SELDOMpy-1.0.tar.gz from build tracker '/tmp/pip-build-tracker-7gd_rw_t' 2023-08-28T14:03:33,936 Created temporary directory: /tmp/pip-unpack-idl77aub 2023-08-28T14:03:33,937 Building wheels for collected packages: seldompy 2023-08-28T14:03:33,946 Created temporary directory: /tmp/pip-wheel-bk35pf0p 2023-08-28T14:03:33,946 Building wheel for seldompy (setup.py): started 2023-08-28T14:03:33,948 Destination directory: /tmp/pip-wheel-bk35pf0p 2023-08-28T14:03:33,949 Running command python setup.py bdist_wheel 2023-08-28T14:03:35,667 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-28T14:03:35,669 !! 2023-08-28T14:03:35,669 ******************************************************************************** 2023-08-28T14:03:35,670 Usage of dash-separated 'description-file' will not be supported in future 2023-08-28T14:03:35,670 versions. Please use the underscore name 'description_file' instead. 2023-08-28T14:03:35,671 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-28T14:03:35,671 or your builds will no longer be supported. 2023-08-28T14:03:35,672 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-28T14:03:35,672 ******************************************************************************** 2023-08-28T14:03:35,673 !! 2023-08-28T14:03:35,673 opt = self.warn_dash_deprecation(opt, section) 2023-08-28T14:03:36,130 running bdist_wheel 2023-08-28T14:03:36,983 running build 2023-08-28T14:03:36,984 running build_py 2023-08-28T14:03:37,070 creating build 2023-08-28T14:03:37,071 creating build/lib.linux-armv7l-cpython-37 2023-08-28T14:03:37,073 creating build/lib.linux-armv7l-cpython-37/SELDOMpy 2023-08-28T14:03:37,075 copying SELDOMpy/__init__.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy 2023-08-28T14:03:37,080 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,082 copying SELDOMpy/src/__init__.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,085 running egg_info 2023-08-28T14:03:37,265 writing SELDOMpy.egg-info/PKG-INFO 2023-08-28T14:03:37,269 writing dependency_links to SELDOMpy.egg-info/dependency_links.txt 2023-08-28T14:03:37,274 writing requirements to SELDOMpy.egg-info/requires.txt 2023-08-28T14:03:37,276 writing top-level names to SELDOMpy.egg-info/top_level.txt 2023-08-28T14:03:37,378 reading manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-08-28T14:03:37,393 reading manifest template 'MANIFEST.in' 2023-08-28T14:03:37,407 adding license file 'LICENSE.txt' 2023-08-28T14:03:37,428 writing manifest file 'SELDOMpy.egg-info/SOURCES.txt' 2023-08-28T14:03:37,433 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.examples.MAPK' is absent from the `packages` configuration. 2023-08-28T14:03:37,434 !! 2023-08-28T14:03:37,434 ******************************************************************************** 2023-08-28T14:03:37,435 ############################ 2023-08-28T14:03:37,435 # Package would be ignored # 2023-08-28T14:03:37,435 ############################ 2023-08-28T14:03:37,436 Python recognizes 'SELDOMpy.examples.MAPK' as an importable package[^1], 2023-08-28T14:03:37,436 but it is absent from setuptools' `packages` configuration. 2023-08-28T14:03:37,437 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-28T14:03:37,437 package, please make sure that 'SELDOMpy.examples.MAPK' is explicitly added 2023-08-28T14:03:37,437 to the `packages` configuration field. 2023-08-28T14:03:37,438 Alternatively, you can also rely on setuptools' discovery methods 2023-08-28T14:03:37,438 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-28T14:03:37,438 instead of `find_packages(...)`/`find:`). 2023-08-28T14:03:37,439 You can read more about "package discovery" on setuptools documentation page: 2023-08-28T14:03:37,440 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-28T14:03:37,440 If you don't want 'SELDOMpy.examples.MAPK' to be distributed and are 2023-08-28T14:03:37,440 already explicitly excluding 'SELDOMpy.examples.MAPK' via 2023-08-28T14:03:37,441 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-28T14:03:37,441 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-28T14:03:37,442 combination with a more fine grained `package-data` configuration. 2023-08-28T14:03:37,442 You can read more about "package data files" on setuptools documentation page: 2023-08-28T14:03:37,443 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-28T14:03:37,444 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-28T14:03:37,444 even if it does not contain any `.py` files. 2023-08-28T14:03:37,444 On the other hand, currently there is no concept of package data 2023-08-28T14:03:37,445 directory, all directories are treated like packages. 2023-08-28T14:03:37,445 ******************************************************************************** 2023-08-28T14:03:37,445 !! 2023-08-28T14:03:37,446 check.warn(importable) 2023-08-28T14:03:37,446 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.examples.SP' is absent from the `packages` configuration. 2023-08-28T14:03:37,447 !! 2023-08-28T14:03:37,447 ******************************************************************************** 2023-08-28T14:03:37,448 ############################ 2023-08-28T14:03:37,448 # Package would be ignored # 2023-08-28T14:03:37,448 ############################ 2023-08-28T14:03:37,448 Python recognizes 'SELDOMpy.examples.SP' as an importable package[^1], 2023-08-28T14:03:37,449 but it is absent from setuptools' `packages` configuration. 2023-08-28T14:03:37,449 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-28T14:03:37,450 package, please make sure that 'SELDOMpy.examples.SP' is explicitly added 2023-08-28T14:03:37,450 to the `packages` configuration field. 2023-08-28T14:03:37,451 Alternatively, you can also rely on setuptools' discovery methods 2023-08-28T14:03:37,451 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-28T14:03:37,451 instead of `find_packages(...)`/`find:`). 2023-08-28T14:03:37,452 You can read more about "package discovery" on setuptools documentation page: 2023-08-28T14:03:37,452 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-28T14:03:37,453 If you don't want 'SELDOMpy.examples.SP' to be distributed and are 2023-08-28T14:03:37,453 already explicitly excluding 'SELDOMpy.examples.SP' via 2023-08-28T14:03:37,454 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-28T14:03:37,454 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-28T14:03:37,454 combination with a more fine grained `package-data` configuration. 2023-08-28T14:03:37,455 You can read more about "package data files" on setuptools documentation page: 2023-08-28T14:03:37,455 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-28T14:03:37,456 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-28T14:03:37,456 even if it does not contain any `.py` files. 2023-08-28T14:03:37,457 On the other hand, currently there is no concept of package data 2023-08-28T14:03:37,457 directory, all directories are treated like packages. 2023-08-28T14:03:37,457 ******************************************************************************** 2023-08-28T14:03:37,458 !! 2023-08-28T14:03:37,458 check.warn(importable) 2023-08-28T14:03:37,458 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.functions' is absent from the `packages` configuration. 2023-08-28T14:03:37,459 !! 2023-08-28T14:03:37,459 ******************************************************************************** 2023-08-28T14:03:37,460 ############################ 2023-08-28T14:03:37,460 # Package would be ignored # 2023-08-28T14:03:37,460 ############################ 2023-08-28T14:03:37,460 Python recognizes 'SELDOMpy.functions' as an importable package[^1], 2023-08-28T14:03:37,461 but it is absent from setuptools' `packages` configuration. 2023-08-28T14:03:37,462 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-28T14:03:37,462 package, please make sure that 'SELDOMpy.functions' is explicitly added 2023-08-28T14:03:37,462 to the `packages` configuration field. 2023-08-28T14:03:37,463 Alternatively, you can also rely on setuptools' discovery methods 2023-08-28T14:03:37,463 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-28T14:03:37,463 instead of `find_packages(...)`/`find:`). 2023-08-28T14:03:37,464 You can read more about "package discovery" on setuptools documentation page: 2023-08-28T14:03:37,465 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-28T14:03:37,465 If you don't want 'SELDOMpy.functions' to be distributed and are 2023-08-28T14:03:37,465 already explicitly excluding 'SELDOMpy.functions' via 2023-08-28T14:03:37,466 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-28T14:03:37,466 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-28T14:03:37,466 combination with a more fine grained `package-data` configuration. 2023-08-28T14:03:37,467 You can read more about "package data files" on setuptools documentation page: 2023-08-28T14:03:37,467 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-28T14:03:37,468 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-28T14:03:37,469 even if it does not contain any `.py` files. 2023-08-28T14:03:37,469 On the other hand, currently there is no concept of package data 2023-08-28T14:03:37,469 directory, all directories are treated like packages. 2023-08-28T14:03:37,469 ******************************************************************************** 2023-08-28T14:03:37,470 !! 2023-08-28T14:03:37,470 check.warn(importable) 2023-08-28T14:03:37,471 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_amigo' is absent from the `packages` configuration. 2023-08-28T14:03:37,471 !! 2023-08-28T14:03:37,472 ******************************************************************************** 2023-08-28T14:03:37,472 ############################ 2023-08-28T14:03:37,472 # Package would be ignored # 2023-08-28T14:03:37,472 ############################ 2023-08-28T14:03:37,473 Python recognizes 'SELDOMpy.src.include.include_amigo' as an importable package[^1], 2023-08-28T14:03:37,473 but it is absent from setuptools' `packages` configuration. 2023-08-28T14:03:37,474 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-28T14:03:37,474 package, please make sure that 'SELDOMpy.src.include.include_amigo' is explicitly added 2023-08-28T14:03:37,474 to the `packages` configuration field. 2023-08-28T14:03:37,475 Alternatively, you can also rely on setuptools' discovery methods 2023-08-28T14:03:37,475 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-28T14:03:37,476 instead of `find_packages(...)`/`find:`). 2023-08-28T14:03:37,476 You can read more about "package discovery" on setuptools documentation page: 2023-08-28T14:03:37,477 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-28T14:03:37,478 If you don't want 'SELDOMpy.src.include.include_amigo' to be distributed and are 2023-08-28T14:03:37,478 already explicitly excluding 'SELDOMpy.src.include.include_amigo' via 2023-08-28T14:03:37,478 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-28T14:03:37,479 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-28T14:03:37,479 combination with a more fine grained `package-data` configuration. 2023-08-28T14:03:37,479 You can read more about "package data files" on setuptools documentation page: 2023-08-28T14:03:37,480 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-28T14:03:37,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-28T14:03:37,481 even if it does not contain any `.py` files. 2023-08-28T14:03:37,482 On the other hand, currently there is no concept of package data 2023-08-28T14:03:37,482 directory, all directories are treated like packages. 2023-08-28T14:03:37,483 ******************************************************************************** 2023-08-28T14:03:37,483 !! 2023-08-28T14:03:37,484 check.warn(importable) 2023-08-28T14:03:37,484 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.cvodes' is absent from the `packages` configuration. 2023-08-28T14:03:37,484 !! 2023-08-28T14:03:37,485 ******************************************************************************** 2023-08-28T14:03:37,485 ############################ 2023-08-28T14:03:37,486 # Package would be ignored # 2023-08-28T14:03:37,486 ############################ 2023-08-28T14:03:37,487 Python recognizes 'SELDOMpy.src.include.include_cvodes.cvodes' as an importable package[^1], 2023-08-28T14:03:37,488 but it is absent from setuptools' `packages` configuration. 2023-08-28T14:03:37,488 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-28T14:03:37,489 package, please make sure that 'SELDOMpy.src.include.include_cvodes.cvodes' is explicitly added 2023-08-28T14:03:37,489 to the `packages` configuration field. 2023-08-28T14:03:37,490 Alternatively, you can also rely on setuptools' discovery methods 2023-08-28T14:03:37,490 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-28T14:03:37,490 instead of `find_packages(...)`/`find:`). 2023-08-28T14:03:37,491 You can read more about "package discovery" on setuptools documentation page: 2023-08-28T14:03:37,492 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-28T14:03:37,492 If you don't want 'SELDOMpy.src.include.include_cvodes.cvodes' to be distributed and are 2023-08-28T14:03:37,493 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.cvodes' via 2023-08-28T14:03:37,493 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-28T14:03:37,493 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-28T14:03:37,494 combination with a more fine grained `package-data` configuration. 2023-08-28T14:03:37,494 You can read more about "package data files" on setuptools documentation page: 2023-08-28T14:03:37,495 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-28T14:03:37,496 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-28T14:03:37,496 even if it does not contain any `.py` files. 2023-08-28T14:03:37,497 On the other hand, currently there is no concept of package data 2023-08-28T14:03:37,497 directory, all directories are treated like packages. 2023-08-28T14:03:37,498 ******************************************************************************** 2023-08-28T14:03:37,498 !! 2023-08-28T14:03:37,499 check.warn(importable) 2023-08-28T14:03:37,499 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.nvector' is absent from the `packages` configuration. 2023-08-28T14:03:37,499 !! 2023-08-28T14:03:37,500 ******************************************************************************** 2023-08-28T14:03:37,500 ############################ 2023-08-28T14:03:37,500 # Package would be ignored # 2023-08-28T14:03:37,501 ############################ 2023-08-28T14:03:37,501 Python recognizes 'SELDOMpy.src.include.include_cvodes.nvector' as an importable package[^1], 2023-08-28T14:03:37,502 but it is absent from setuptools' `packages` configuration. 2023-08-28T14:03:37,502 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-28T14:03:37,503 package, please make sure that 'SELDOMpy.src.include.include_cvodes.nvector' is explicitly added 2023-08-28T14:03:37,503 to the `packages` configuration field. 2023-08-28T14:03:37,504 Alternatively, you can also rely on setuptools' discovery methods 2023-08-28T14:03:37,504 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-28T14:03:37,504 instead of `find_packages(...)`/`find:`). 2023-08-28T14:03:37,505 You can read more about "package discovery" on setuptools documentation page: 2023-08-28T14:03:37,506 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-28T14:03:37,506 If you don't want 'SELDOMpy.src.include.include_cvodes.nvector' to be distributed and are 2023-08-28T14:03:37,507 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.nvector' via 2023-08-28T14:03:37,507 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-28T14:03:37,507 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-28T14:03:37,508 combination with a more fine grained `package-data` configuration. 2023-08-28T14:03:37,508 You can read more about "package data files" on setuptools documentation page: 2023-08-28T14:03:37,509 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-28T14:03:37,510 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-28T14:03:37,510 even if it does not contain any `.py` files. 2023-08-28T14:03:37,510 On the other hand, currently there is no concept of package data 2023-08-28T14:03:37,511 directory, all directories are treated like packages. 2023-08-28T14:03:37,511 ******************************************************************************** 2023-08-28T14:03:37,512 !! 2023-08-28T14:03:37,512 check.warn(importable) 2023-08-28T14:03:37,513 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'SELDOMpy.src.include.include_cvodes.sundials' is absent from the `packages` configuration. 2023-08-28T14:03:37,513 !! 2023-08-28T14:03:37,514 ******************************************************************************** 2023-08-28T14:03:37,514 ############################ 2023-08-28T14:03:37,514 # Package would be ignored # 2023-08-28T14:03:37,515 ############################ 2023-08-28T14:03:37,515 Python recognizes 'SELDOMpy.src.include.include_cvodes.sundials' as an importable package[^1], 2023-08-28T14:03:37,515 but it is absent from setuptools' `packages` configuration. 2023-08-28T14:03:37,516 This leads to an ambiguous overall configuration. If you want to distribute this 2023-08-28T14:03:37,516 package, please make sure that 'SELDOMpy.src.include.include_cvodes.sundials' is explicitly added 2023-08-28T14:03:37,517 to the `packages` configuration field. 2023-08-28T14:03:37,517 Alternatively, you can also rely on setuptools' discovery methods 2023-08-28T14:03:37,518 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-08-28T14:03:37,518 instead of `find_packages(...)`/`find:`). 2023-08-28T14:03:37,519 You can read more about "package discovery" on setuptools documentation page: 2023-08-28T14:03:37,519 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-08-28T14:03:37,520 If you don't want 'SELDOMpy.src.include.include_cvodes.sundials' to be distributed and are 2023-08-28T14:03:37,520 already explicitly excluding 'SELDOMpy.src.include.include_cvodes.sundials' via 2023-08-28T14:03:37,521 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-08-28T14:03:37,521 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-08-28T14:03:37,521 combination with a more fine grained `package-data` configuration. 2023-08-28T14:03:37,522 You can read more about "package data files" on setuptools documentation page: 2023-08-28T14:03:37,523 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-08-28T14:03:37,524 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-08-28T14:03:37,524 even if it does not contain any `.py` files. 2023-08-28T14:03:37,524 On the other hand, currently there is no concept of package data 2023-08-28T14:03:37,525 directory, all directories are treated like packages. 2023-08-28T14:03:37,525 ******************************************************************************** 2023-08-28T14:03:37,526 !! 2023-08-28T14:03:37,526 check.warn(importable) 2023-08-28T14:03:37,526 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/examples 2023-08-28T14:03:37,526 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/MAPK 2023-08-28T14:03:37,527 copying SELDOMpy/examples/MAPK/MAPK.xlsx -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/MAPK 2023-08-28T14:03:37,527 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/MAPK 2023-08-28T14:03:37,528 copying SELDOMpy/examples/MAPK/MAPK_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/MAPK 2023-08-28T14:03:37,528 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/SP 2023-08-28T14:03:37,528 copying SELDOMpy/examples/SP/SP.xlsx -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/SP 2023-08-28T14:03:37,529 copying SELDOMpy/examples/SP/SP_training_and_reduce.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/SP 2023-08-28T14:03:37,529 copying SELDOMpy/examples/SP/SP_training_and_reduce_pyPESTO.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/examples/SP 2023-08-28T14:03:37,530 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,530 copying SELDOMpy/functions/buildmim.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,530 copying SELDOMpy/functions/extras.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,531 copying SELDOMpy/functions/gen_exps.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,531 copying SELDOMpy/functions/getLBODEmodel.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,531 copying SELDOMpy/functions/getRandomLBODEmodel.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,534 copying SELDOMpy/functions/optimization.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,538 copying SELDOMpy/functions/plot_results.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,542 copying SELDOMpy/functions/reduce_fun.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,546 copying SELDOMpy/functions/simulate_logic_based_ode.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,550 copying SELDOMpy/functions/simulate_logic_based_ode_obs.py -> build/lib.linux-armv7l-cpython-37/SELDOMpy/functions 2023-08-28T14:03:37,555 copying SELDOMpy/src/AMIGO_model.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,560 copying SELDOMpy/src/AMIGO_model_stats.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,564 copying SELDOMpy/src/AMIGO_problem.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,568 copying SELDOMpy/src/CNOStructure.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,572 copying SELDOMpy/src/anODEModel.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,576 copying SELDOMpy/src/cvodea.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,586 copying SELDOMpy/src/cvodea_io.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,591 copying SELDOMpy/src/cvodes.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,609 copying SELDOMpy/src/cvodes_band.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,614 copying SELDOMpy/src/cvodes_bandpre.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,620 copying SELDOMpy/src/cvodes_bandpre_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,624 copying SELDOMpy/src/cvodes_bbdpre.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,630 copying SELDOMpy/src/cvodes_bbdpre_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,633 copying SELDOMpy/src/cvodes_dense.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,638 copying SELDOMpy/src/cvodes_diag.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,644 copying SELDOMpy/src/cvodes_diag_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,648 copying SELDOMpy/src/cvodes_direct.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,653 copying SELDOMpy/src/cvodes_direct_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,658 copying SELDOMpy/src/cvodes_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,665 copying SELDOMpy/src/cvodes_io.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,672 copying SELDOMpy/src/cvodes_spbcgs.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,678 copying SELDOMpy/src/cvodes_spgmr.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,684 copying SELDOMpy/src/cvodes_spils.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,692 copying SELDOMpy/src/cvodes_spils_impl.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,697 copying SELDOMpy/src/cvodes_sptfqmr.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,703 copying SELDOMpy/src/decimal2binary.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,708 copying SELDOMpy/src/dhc.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,713 copying SELDOMpy/src/findStates.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,718 copying SELDOMpy/src/fnvector_serial.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,723 copying SELDOMpy/src/fnvector_serial.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,728 copying SELDOMpy/src/getAdjacencyMatrix.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,733 copying SELDOMpy/src/getNumBits.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,737 copying SELDOMpy/src/getNumInputs.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,742 copying SELDOMpy/src/getStateIndex.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,747 copying SELDOMpy/src/getTruthTables.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,752 copying SELDOMpy/src/get_count_bits.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,757 copying SELDOMpy/src/get_input_index.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,762 copying SELDOMpy/src/get_support_truth_tables.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,767 copying SELDOMpy/src/get_truth_tables_index.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,772 copying SELDOMpy/src/hill_function.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,776 copying SELDOMpy/src/linear_transfer_function.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,781 copying SELDOMpy/src/normHill.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,786 copying SELDOMpy/src/nvector_serial.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,792 copying SELDOMpy/src/printAdjMat.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,797 copying SELDOMpy/src/printInterMat.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,802 copying SELDOMpy/src/printNminiTerms.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,807 copying SELDOMpy/src/printTruthTables.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,811 copying SELDOMpy/src/sim_logic_ode.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,817 copying SELDOMpy/src/simulate_amigo_model.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,822 copying SELDOMpy/src/sundials_band.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,827 copying SELDOMpy/src/sundials_dense.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,831 copying SELDOMpy/src/sundials_direct.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,836 copying SELDOMpy/src/sundials_iterative.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,841 copying SELDOMpy/src/sundials_math.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,845 copying SELDOMpy/src/sundials_nvector.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,849 copying SELDOMpy/src/sundials_spbcgs.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,854 copying SELDOMpy/src/sundials_spgmr.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,860 copying SELDOMpy/src/sundials_sptfqmr.c -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:37,865 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include 2023-08-28T14:03:37,866 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,868 copying SELDOMpy/src/include/include_amigo/AMIGO_hdf5.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,872 copying SELDOMpy/src/include/include_amigo/AMIGO_model.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,877 copying SELDOMpy/src/include/include_amigo/AMIGO_model_stats.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,881 copying SELDOMpy/src/include/include_amigo/AMIGO_problem.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,885 copying SELDOMpy/src/include/include_amigo/amigoJAC.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,889 copying SELDOMpy/src/include/include_amigo/amigoRHS.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,894 copying SELDOMpy/src/include/include_amigo/amigoSensRHS.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,897 copying SELDOMpy/src/include/include_amigo/simulate_amigo_model.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_amigo 2023-08-28T14:03:37,902 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes 2023-08-28T14:03:37,902 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,905 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,915 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_band.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,920 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bandpre.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,926 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_bbdpre.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,931 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_dense.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,935 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_diag.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,940 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_direct.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,945 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_lapack.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,950 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spbcgs.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,954 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spgmr.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,959 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_spils.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,965 copying SELDOMpy/src/include/include_cvodes/cvodes/cvodes_sptfqmr.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/cvodes 2023-08-28T14:03:37,969 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/nvector 2023-08-28T14:03:37,971 copying SELDOMpy/src/include/include_cvodes/nvector/nvector_serial.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/nvector 2023-08-28T14:03:37,977 creating build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:37,979 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_band.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:37,984 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_config.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:37,989 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_dense.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:37,994 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_direct.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:37,999 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_fnvector.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,003 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_iterative.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,008 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_lapack.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,013 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_math.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,017 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_nvector.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,022 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spbcgs.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,027 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_spgmr.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,032 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_sptfqmr.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,037 copying SELDOMpy/src/include/include_cvodes/sundials/sundials_types.h -> build/lib.linux-armv7l-cpython-37/SELDOMpy/src/include/include_cvodes/sundials 2023-08-28T14:03:38,045 running build_ext 2023-08-28T14:03:38,059 building 'hello' extension 2023-08-28T14:03:38,064 creating build/temp.linux-armv7l-cpython-37 2023-08-28T14:03:38,065 creating build/temp.linux-armv7l-cpython-37/SELDOMpy 2023-08-28T14:03:38,066 creating build/temp.linux-armv7l-cpython-37/SELDOMpy/src 2023-08-28T14:03:38,072 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/AMIGO_model.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/AMIGO_model.o 2023-08-28T14:03:38,418 SELDOMpy/src/AMIGO_model.c: In function ‘simulate_AMIGO_model’: 2023-08-28T14:03:38,418 SELDOMpy/src/AMIGO_model.c:225:1: warning: control reaches end of non-void function [-Wreturn-type] 2023-08-28T14:03:38,419 }; 2023-08-28T14:03:38,419 ^ 2023-08-28T14:03:39,371 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/AMIGO_model_stats.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/AMIGO_model_stats.o 2023-08-28T14:03:39,471 SELDOMpy/src/AMIGO_model_stats.c:1:9: warning: #pragma once in main file 2023-08-28T14:03:39,472 #pragma once 2023-08-28T14:03:39,472 ^~~~ 2023-08-28T14:03:39,649 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/AMIGO_problem.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/AMIGO_problem.o 2023-08-28T14:03:39,949 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LSQ’: 2023-08-28T14:03:39,950 SELDOMpy/src/AMIGO_problem.c:132: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] 2023-08-28T14:03:39,950 #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-08-28T14:03:39,951 SELDOMpy/src/AMIGO_problem.c:134: warning: ignoring #pragma omp for [-Wunknown-pragmas] 2023-08-28T14:03:39,952 #pragma omp for schedule(dynamic,1) private(i) 2023-08-28T14:03:39,953 SELDOMpy/src/AMIGO_problem.c:127:6: warning: unused variable ‘counter’ [-Wunused-variable] 2023-08-28T14:03:39,953 int counter=0; 2023-08-28T14:03:39,954 ^~~~~~~ 2023-08-28T14:03:39,954 SELDOMpy/src/AMIGO_problem.c:126:15: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-08-28T14:03:39,954 int i, j, k, n_exps, n_times, n_obs; 2023-08-28T14:03:39,955 ^~~~~~ 2023-08-28T14:03:39,955 SELDOMpy/src/AMIGO_problem.c: In function ‘eval_AMIGO_problem_LLK’: 2023-08-28T14:03:39,955 SELDOMpy/src/AMIGO_problem.c:185: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] 2023-08-28T14:03:39,956 #pragma omp parallel num_threads(amigo_problem->nthreads) 2023-08-28T14:03:39,956 SELDOMpy/src/AMIGO_problem.c:187: warning: ignoring #pragma omp for [-Wunknown-pragmas] 2023-08-28T14:03:39,957 #pragma omp for schedule(dynamic,1) private(i,flag) 2023-08-28T14:03:39,957 SELDOMpy/src/AMIGO_problem.c:182:6: warning: unused variable ‘counter’ [-Wunused-variable] 2023-08-28T14:03:39,958 int counter=0; 2023-08-28T14:03:39,959 ^~~~~~~ 2023-08-28T14:03:39,959 SELDOMpy/src/AMIGO_problem.c:181:39: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-08-28T14:03:39,960 int i, j, k, n_exps, n_times, n_obs,flag; 2023-08-28T14:03:39,960 ^~~~ 2023-08-28T14:03:39,960 SELDOMpy/src/AMIGO_problem.c:181:16: warning: unused variable ‘n_exps’ [-Wunused-variable] 2023-08-28T14:03:39,961 int i, j, k, n_exps, n_times, n_obs,flag; 2023-08-28T14:03:39,961 ^~~~~~ 2023-08-28T14:03:40,779 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/anODEModel.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/anODEModel.o 2023-08-28T14:03:41,075 SELDOMpy/src/anODEModel.c: In function ‘amigoRHS’: 2023-08-28T14:03:41,076 SELDOMpy/src/anODEModel.c:23:9: warning: unused variable ‘countBin’ [-Wunused-variable] 2023-08-28T14:03:41,076 int countBin=0; 2023-08-28T14:03:41,077 ^~~~~~~~ 2023-08-28T14:03:41,078 SELDOMpy/src/anODEModel.c: In function ‘amigo_Y_at_tcon’: 2023-08-28T14:03:41,078 SELDOMpy/src/anODEModel.c:118:18: warning: unused variable ‘amigo_model’ [-Wunused-variable] 2023-08-28T14:03:41,079 AMIGO_model* amigo_model=(AMIGO_model*)data; 2023-08-28T14:03:41,079 ^~~~~~~~~~~ 2023-08-28T14:03:41,452 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/cvodea.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/cvodea.o 2023-08-28T14:03:42,003 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteStorePnt’: 2023-08-28T14:03:42,004 SELDOMpy/src/cvodea.c:2461:11: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable] 2023-08-28T14:03:42,005 int is, retval; 2023-08-28T14:03:42,005 ^~~~~~ 2023-08-28T14:03:42,031 SELDOMpy/src/cvodea.c: In function ‘CVArhsQ’: 2023-08-28T14:03:42,032 SELDOMpy/src/cvodea.c:2957:7: warning: variable ‘flag’ set but not used [-Wunused-but-set-variable] 2023-08-28T14:03:42,033 int flag, retval; 2023-08-28T14:03:42,034 ^~~~ 2023-08-28T14:03:43,691 SELDOMpy/src/cvodea.c: In function ‘CVAhermiteGetY’: 2023-08-28T14:03:43,692 SELDOMpy/src/cvodea.c:2523:19: warning: ‘ySd0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-28T14:03:43,692 N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-08-28T14:03:43,692 ^~~~ 2023-08-28T14:03:43,693 SELDOMpy/src/cvodea.c:2523:13: warning: ‘yS0’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-28T14:03:43,693 N_Vector *yS0, *ySd0, *yS1, *ySd1; 2023-08-28T14:03:43,694 ^~~ 2023-08-28T14:03:45,859 SELDOMpy/src/cvodea.c: In function ‘CVodeB’: 2023-08-28T14:03:45,860 SELDOMpy/src/cvodea.c:1263:13: warning: ‘flag’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2023-08-28T14:03:45,860 int sign, flag; 2023-08-28T14:03:45,861 ^~~~ 2023-08-28T14:03:46,906 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/cvodea_io.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/cvodea_io.o 2023-08-28T14:03:48,167 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -ISELDOMpy/src/include/include_amigo -ISELDOMpy/src/include/include_cvodes -ISELDOMpy/src -I/usr/local/lib/python3.7/dist-packages/numpy/core/include -I/usr/include/python3.7m -c SELDOMpy/src/cvodes.c -o build/temp.linux-armv7l-cpython-37/SELDOMpy/src/cvodes.o 2023-08-28T14:03:48,567 SELDOMpy/src/cvodes.c: In function ‘cvHin’: 2023-08-28T14:03:48,568 SELDOMpy/src/cvodes.c:4328:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 2023-08-28T14:03:48,569 if (count1 <= 2) 2023-08-28T14:03:48,569 ^~ 2023-08-28T14:03:48,569 SELDOMpy/src/cvodes.c:4330:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 2023-08-28T14:03:48,570 if (retval == QRHSFUNC_RECVR) return(CV_REPTD_QRHSFUNC_ERR); 2023-08-28T14:03:48,570 ^~ 2023-08-28T14:03:49,148 SELDOMpy/src/cvodes.c: In function ‘cvQuadSensRhs1InternalDQ’: 2023-08-28T14:03:49,152 SELDOMpy/src/cvodes.c:8850:20: warning: variable ‘rDeltap’ set but not used [-Wunused-but-set-variable] 2023-08-28T14:03:49,152 realtype Deltap, rDeltap; 2023-08-28T14:03:49,152 ^~~~~~~ 2023-08-28T14:03:49,153 SELDOMpy/src/cvodes.c: In function ‘cvProcessError’: 2023-08-28T14:03:49,154 SELDOMpy/src/cvodes.c:8961:21: error: format not a string literal and no format arguments [-Werror=format-security] 2023-08-28T14:03:49,155 fprintf(stderr, msg); 2023-08-28T14:03:49,155 ^~~ 2023-08-28T14:04:02,564 cc1: some warnings being treated as errors 2023-08-28T14:04:02,589 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-08-28T14:04:02,817 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-08-28T14:04:02,862 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-08-28T14:04:02,862 exec(compile('"'"''"'"''"'"' 2023-08-28T14:04:02,862 # This is -- a caller that pip uses to run setup.py 2023-08-28T14:04:02,862 # 2023-08-28T14:04:02,862 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-08-28T14:04:02,862 # import from `distutils.core` to work with newer packaging standards. 2023-08-28T14:04:02,862 # - It provides a clear error message when setuptools is not installed. 2023-08-28T14:04:02,862 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-08-28T14:04:02,862 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-08-28T14:04:02,862 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-08-28T14:04:02,862 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-08-28T14:04:02,862 import os, sys, tokenize 2023-08-28T14:04:02,862 2023-08-28T14:04:02,862 try: 2023-08-28T14:04:02,862 import setuptools 2023-08-28T14:04:02,862 except ImportError as error: 2023-08-28T14:04:02,862 print( 2023-08-28T14:04:02,862 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-08-28T14:04:02,862 "the build environment.", 2023-08-28T14:04:02,862 file=sys.stderr, 2023-08-28T14:04:02,862 ) 2023-08-28T14:04:02,862 sys.exit(1) 2023-08-28T14:04:02,862 2023-08-28T14:04:02,862 __file__ = %r 2023-08-28T14:04:02,862 sys.argv[0] = __file__ 2023-08-28T14:04:02,862 2023-08-28T14:04:02,862 if os.path.exists(__file__): 2023-08-28T14:04:02,862 filename = __file__ 2023-08-28T14:04:02,862 with tokenize.open(__file__) as f: 2023-08-28T14:04:02,862 setup_py_code = f.read() 2023-08-28T14:04:02,862 else: 2023-08-28T14:04:02,862 filename = "" 2023-08-28T14:04:02,862 setup_py_code = "from setuptools import setup; setup()" 2023-08-28T14:04:02,862 2023-08-28T14:04:02,862 exec(compile(setup_py_code, filename, "exec")) 2023-08-28T14:04:02,862 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-g1kik6bu/seldompy_f843da5e2abb45078039185bc8779833/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-bk35pf0p[/] 2023-08-28T14:04:02,863 [bold magenta]cwd[/]: /tmp/pip-wheel-g1kik6bu/seldompy_f843da5e2abb45078039185bc8779833/ 2023-08-28T14:04:02,863 Building wheel for seldompy (setup.py): finished with status 'error' 2023-08-28T14:04:02,866 ERROR: Failed building wheel for seldompy 2023-08-28T14:04:02,868 Running setup.py clean for seldompy 2023-08-28T14:04:02,870 Running command python setup.py clean 2023-08-28T14:04:04,579 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-28T14:04:04,581 !! 2023-08-28T14:04:04,582 ******************************************************************************** 2023-08-28T14:04:04,582 Usage of dash-separated 'description-file' will not be supported in future 2023-08-28T14:04:04,582 versions. Please use the underscore name 'description_file' instead. 2023-08-28T14:04:04,583 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-28T14:04:04,583 or your builds will no longer be supported. 2023-08-28T14:04:04,584 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-28T14:04:04,584 ******************************************************************************** 2023-08-28T14:04:04,585 !! 2023-08-28T14:04:04,585 opt = self.warn_dash_deprecation(opt, section) 2023-08-28T14:04:04,955 running clean 2023-08-28T14:04:05,113 removing 'build/temp.linux-armv7l-cpython-37' (and everything under it) 2023-08-28T14:04:05,122 removing 'build/lib.linux-armv7l-cpython-37' (and everything under it) 2023-08-28T14:04:05,201 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-08-28T14:04:05,202 'build/scripts-3.7' does not exist -- can't clean it 2023-08-28T14:04:05,202 removing 'build' 2023-08-28T14:04:05,371 Failed to build seldompy 2023-08-28T14:04:05,375 ERROR: Failed to build one or more wheels 2023-08-28T14:04:05,379 Exception information: 2023-08-28T14:04:05,379 Traceback (most recent call last): 2023-08-28T14:04:05,379 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 169, in exc_logging_wrapper 2023-08-28T14:04:05,379 status = run_func(*args) 2023-08-28T14:04:05,379 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-08-28T14:04:05,379 return func(self, options, args) 2023-08-28T14:04:05,379 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 178, in run 2023-08-28T14:04:05,379 raise CommandError("Failed to build one or more wheels") 2023-08-28T14:04:05,379 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-08-28T14:04:05,385 Removed build tracker: '/tmp/pip-build-tracker-7gd_rw_t'