2023-08-28T18:23:11,437 Created temporary directory: /tmp/pip-build-tracker-s27wkawm 2023-08-28T18:23:11,440 Initialized build tracking at /tmp/pip-build-tracker-s27wkawm 2023-08-28T18:23:11,441 Created build tracker: /tmp/pip-build-tracker-s27wkawm 2023-08-28T18:23:11,441 Entered build tracker: /tmp/pip-build-tracker-s27wkawm 2023-08-28T18:23:11,442 Created temporary directory: /tmp/pip-wheel-fdr67kwb 2023-08-28T18:23:11,451 Created temporary directory: /tmp/pip-ephem-wheel-cache-aw5ue1_5 2023-08-28T18:23:11,505 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-28T18:23:11,513 2 location(s) to search for versions of gqlib: 2023-08-28T18:23:11,513 * https://pypi.org/simple/gqlib/ 2023-08-28T18:23:11,513 * https://www.piwheels.org/simple/gqlib/ 2023-08-28T18:23:11,514 Fetching project page and analyzing links: https://pypi.org/simple/gqlib/ 2023-08-28T18:23:11,515 Getting page https://pypi.org/simple/gqlib/ 2023-08-28T18:23:11,520 Found index url https://pypi.org/simple/ 2023-08-28T18:23:11,703 Fetched page https://pypi.org/simple/gqlib/ as application/vnd.pypi.simple.v1+json 2023-08-28T18:23:11,706 Found link https://files.pythonhosted.org/packages/a5/26/1fb85708574f429a67cf7ebd09819706893e408c693c867248098c8b6bb2/gqlib-2.9.9.3.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.9.9.3 2023-08-28T18:23:11,707 Found link https://files.pythonhosted.org/packages/0d/5a/694f5a2ea4ee7048c32cdd2cb69c7f4835e5d8a43328f762434b770b7cfb/gqlib-2.10.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.10.0 2023-08-28T18:23:11,708 Found link https://files.pythonhosted.org/packages/18/a3/f599a42c49499622e4dddc2d7b9c699a728dee1ccead4bac6055ae72d9c1/gqlib-2.12.1.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.1 2023-08-28T18:23:11,708 Found link https://files.pythonhosted.org/packages/1f/8f/6b224c68d14f0d2a28f2c100b23214d1c2abd2f3113e793d9057c70a328f/gqlib-2.12.2.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.2 2023-08-28T18:23:11,709 Fetching project page and analyzing links: https://www.piwheels.org/simple/gqlib/ 2023-08-28T18:23:11,710 Getting page https://www.piwheels.org/simple/gqlib/ 2023-08-28T18:23:11,712 Found index url https://www.piwheels.org/simple/ 2023-08-28T18:23:15,935 Fetched page https://www.piwheels.org/simple/gqlib/ as text/html 2023-08-28T18:23:15,939 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.1-py3-none-any.whl#sha256=f1fb244343d7ea0235837d6a1bd7c60c95f6755b1a2b831691e04f851b4e551b (from https://www.piwheels.org/simple/gqlib/) 2023-08-28T18:23:15,940 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.10.0-py3-none-any.whl#sha256=393b7dc20a4d91ae690b4799f687ff2522c749d97cad0f98bf305f2817b1c0ea (from https://www.piwheels.org/simple/gqlib/) 2023-08-28T18:23:15,940 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.9.9.3-py3-none-any.whl#sha256=2bd1fb961af8b28506ae8b437d5b9e7a5a5f0f88b956679b48a458e056fe35e9 (from https://www.piwheels.org/simple/gqlib/) 2023-08-28T18:23:15,941 Skipping link: not a file: https://www.piwheels.org/simple/gqlib/ 2023-08-28T18:23:15,941 Skipping link: not a file: https://pypi.org/simple/gqlib/ 2023-08-28T18:23:15,974 Given no hashes to check 1 links for project 'gqlib': discarding no candidates 2023-08-28T18:23:16,005 Collecting gqlib==2.12.2 2023-08-28T18:23:16,010 Created temporary directory: /tmp/pip-unpack-sqeyoesr 2023-08-28T18:23:16,184 Downloading gqlib-2.12.2.tar.gz (74 kB) 2023-08-28T18:23:16,654 Added gqlib==2.12.2 from https://files.pythonhosted.org/packages/1f/8f/6b224c68d14f0d2a28f2c100b23214d1c2abd2f3113e793d9057c70a328f/gqlib-2.12.2.tar.gz to build tracker '/tmp/pip-build-tracker-s27wkawm' 2023-08-28T18:23:16,657 Running setup.py (path:/tmp/pip-wheel-fdr67kwb/gqlib_1f082e8329d84306bd4fce5f7f07cc6e/setup.py) egg_info for package gqlib 2023-08-28T18:23:16,658 Created temporary directory: /tmp/pip-pip-egg-info-9t4bbol3 2023-08-28T18:23:16,659 Preparing metadata (setup.py): started 2023-08-28T18:23:16,661 Running command python setup.py egg_info 2023-08-28T18:23:18,334 running egg_info 2023-08-28T18:23:18,337 creating /tmp/pip-pip-egg-info-9t4bbol3/gqlib.egg-info 2023-08-28T18:23:18,416 writing /tmp/pip-pip-egg-info-9t4bbol3/gqlib.egg-info/PKG-INFO 2023-08-28T18:23:18,421 writing dependency_links to /tmp/pip-pip-egg-info-9t4bbol3/gqlib.egg-info/dependency_links.txt 2023-08-28T18:23:18,426 writing requirements to /tmp/pip-pip-egg-info-9t4bbol3/gqlib.egg-info/requires.txt 2023-08-28T18:23:18,428 writing top-level names to /tmp/pip-pip-egg-info-9t4bbol3/gqlib.egg-info/top_level.txt 2023-08-28T18:23:18,431 writing manifest file '/tmp/pip-pip-egg-info-9t4bbol3/gqlib.egg-info/SOURCES.txt' 2023-08-28T18:23:18,699 reading manifest file '/tmp/pip-pip-egg-info-9t4bbol3/gqlib.egg-info/SOURCES.txt' 2023-08-28T18:23:18,702 reading manifest template 'MANIFEST.in' 2023-08-28T18:23:18,704 adding license file 'LICENSE' 2023-08-28T18:23:18,716 writing manifest file '/tmp/pip-pip-egg-info-9t4bbol3/gqlib.egg-info/SOURCES.txt' 2023-08-28T18:23:18,718 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-28T18:23:18,718 !! 2023-08-28T18:23:18,719 ******************************************************************************** 2023-08-28T18:23:18,720 Usage of dash-separated 'description-file' will not be supported in future 2023-08-28T18:23:18,720 versions. Please use the underscore name 'description_file' instead. 2023-08-28T18:23:18,721 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-28T18:23:18,721 or your builds will no longer be supported. 2023-08-28T18:23:18,722 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-28T18:23:18,723 ******************************************************************************** 2023-08-28T18:23:18,724 !! 2023-08-28T18:23:18,724 opt = self.warn_dash_deprecation(opt, section) 2023-08-28T18:23:18,839 Preparing metadata (setup.py): finished with status 'done' 2023-08-28T18:23:18,852 Source in /tmp/pip-wheel-fdr67kwb/gqlib_1f082e8329d84306bd4fce5f7f07cc6e has version 2.12.2, which satisfies requirement gqlib==2.12.2 from https://files.pythonhosted.org/packages/1f/8f/6b224c68d14f0d2a28f2c100b23214d1c2abd2f3113e793d9057c70a328f/gqlib-2.12.2.tar.gz 2023-08-28T18:23:18,854 Removed gqlib==2.12.2 from https://files.pythonhosted.org/packages/1f/8f/6b224c68d14f0d2a28f2c100b23214d1c2abd2f3113e793d9057c70a328f/gqlib-2.12.2.tar.gz from build tracker '/tmp/pip-build-tracker-s27wkawm' 2023-08-28T18:23:18,865 Created temporary directory: /tmp/pip-unpack-8xhrddmx 2023-08-28T18:23:18,866 Building wheels for collected packages: gqlib 2023-08-28T18:23:18,875 Created temporary directory: /tmp/pip-wheel-x6gveike 2023-08-28T18:23:18,876 Building wheel for gqlib (setup.py): started 2023-08-28T18:23:18,878 Destination directory: /tmp/pip-wheel-x6gveike 2023-08-28T18:23:18,879 Running command python setup.py bdist_wheel 2023-08-28T18:23:20,072 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-28T18:23:20,073 !! 2023-08-28T18:23:20,074 ******************************************************************************** 2023-08-28T18:23:20,075 Usage of dash-separated 'description-file' will not be supported in future 2023-08-28T18:23:20,075 versions. Please use the underscore name 'description_file' instead. 2023-08-28T18:23:20,076 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-28T18:23:20,076 or your builds will no longer be supported. 2023-08-28T18:23:20,077 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-28T18:23:20,077 ******************************************************************************** 2023-08-28T18:23:20,078 !! 2023-08-28T18:23:20,078 opt = self.warn_dash_deprecation(opt, section) 2023-08-28T18:23:20,538 running bdist_wheel 2023-08-28T18:23:21,308 running build 2023-08-28T18:23:21,308 running build_py 2023-08-28T18:23:21,395 creating build 2023-08-28T18:23:21,395 creating build/lib 2023-08-28T18:23:21,397 creating build/lib/gqlib 2023-08-28T18:23:21,400 copying gqlib/__main__.py -> build/lib/gqlib 2023-08-28T18:23:21,404 copying gqlib/handle_args.py -> build/lib/gqlib 2023-08-28T18:23:21,409 copying gqlib/__init__.py -> build/lib/gqlib 2023-08-28T18:23:21,414 creating build/lib/gqlib_old 2023-08-28T18:23:21,416 copying gqlib_old/overlap_counter.py -> build/lib/gqlib_old 2023-08-28T18:23:21,422 copying gqlib_old/__main__.py -> build/lib/gqlib_old 2023-08-28T18:23:21,426 copying gqlib_old/handle_args.py -> build/lib/gqlib_old 2023-08-28T18:23:21,430 copying gqlib_old/__init__.py -> build/lib/gqlib_old 2023-08-28T18:23:21,435 creating build/lib/gqlib/runners 2023-08-28T18:23:21,437 copying gqlib/runners/alignment_runner.py -> build/lib/gqlib/runners 2023-08-28T18:23:21,442 copying gqlib/runners/__init__.py -> build/lib/gqlib/runners 2023-08-28T18:23:21,446 creating build/lib/gqlib/annotation 2023-08-28T18:23:21,448 copying gqlib/annotation/count_annotator.py -> build/lib/gqlib/annotation 2023-08-28T18:23:21,453 copying gqlib/annotation/count_writer.py -> build/lib/gqlib/annotation 2023-08-28T18:23:21,458 copying gqlib/annotation/__init__.py -> build/lib/gqlib/annotation 2023-08-28T18:23:21,463 creating build/lib/gqlib/counters 2023-08-28T18:23:21,465 copying gqlib/counters/alignment_counter.py -> build/lib/gqlib/counters 2023-08-28T18:23:21,469 copying gqlib/counters/count_manager.py -> build/lib/gqlib/counters 2023-08-28T18:23:21,474 copying gqlib/counters/seq_counter.py -> build/lib/gqlib/counters 2023-08-28T18:23:21,477 copying gqlib/counters/__init__.py -> build/lib/gqlib/counters 2023-08-28T18:23:21,481 copying gqlib/counters/region_counter.py -> build/lib/gqlib/counters 2023-08-28T18:23:21,486 creating build/lib/gqlib/ui 2023-08-28T18:23:21,488 copying gqlib/ui/validation.py -> build/lib/gqlib/ui 2023-08-28T18:23:21,492 copying gqlib/ui/__init__.py -> build/lib/gqlib/ui 2023-08-28T18:23:21,497 creating build/lib/gqlib/bin 2023-08-28T18:23:21,499 copying gqlib/bin/build_bed_database.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,504 copying gqlib/bin/build_custom_database.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,508 copying gqlib/bin/build_gene_database.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,513 copying gqlib/bin/split_table.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,517 copying gqlib/bin/collate_studies.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,521 copying gqlib/bin/collate_counts.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,525 copying gqlib/bin/db_collate.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,530 copying gqlib/bin/__init__.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,534 copying gqlib/bin/build_domain_database.py -> build/lib/gqlib/bin 2023-08-28T18:23:21,540 creating build/lib/gqlib/db 2023-08-28T18:23:21,543 copying gqlib/db/db_import.py -> build/lib/gqlib/db 2023-08-28T18:23:21,548 copying gqlib/db/annotation_db.py -> build/lib/gqlib/db 2023-08-28T18:23:21,553 copying gqlib/db/database.py -> build/lib/gqlib/db 2023-08-28T18:23:21,557 copying gqlib/db/gff_dbm.py -> build/lib/gqlib/db 2023-08-28T18:23:21,562 copying gqlib/db/__init__.py -> build/lib/gqlib/db 2023-08-28T18:23:21,568 creating build/lib/gqlib/alignment 2023-08-28T18:23:21,570 copying gqlib/alignment/pysam_alignment_processor.py -> build/lib/gqlib/alignment 2023-08-28T18:23:21,575 copying gqlib/alignment/bamreader.py -> build/lib/gqlib/alignment 2023-08-28T18:23:21,581 copying gqlib/alignment/__init__.py -> build/lib/gqlib/alignment 2023-08-28T18:23:21,585 copying gqlib/alignment/aln_group.py -> build/lib/gqlib/alignment 2023-08-28T18:23:21,591 creating build/lib/gqlib/profilers 2023-08-28T18:23:21,594 copying gqlib/profilers/feature_quantifier.py -> build/lib/gqlib/profilers 2023-08-28T18:23:21,600 copying gqlib/profilers/region_quantifier.py -> build/lib/gqlib/profilers 2023-08-28T18:23:21,604 copying gqlib/profilers/gene_quantifier.py -> build/lib/gqlib/profilers 2023-08-28T18:23:21,609 copying gqlib/profilers/__init__.py -> build/lib/gqlib/profilers 2023-08-28T18:23:21,615 creating build/lib/gqlib/db/models 2023-08-28T18:23:21,617 copying gqlib/db/models/db.py -> build/lib/gqlib/db/models 2023-08-28T18:23:21,622 copying gqlib/db/models/meta.py -> build/lib/gqlib/db/models 2023-08-28T18:23:21,626 copying gqlib/db/models/__init__.py -> build/lib/gqlib/db/models 2023-08-28T18:23:21,632 creating build/lib/gqlib_old/annotation 2023-08-28T18:23:21,634 copying gqlib_old/annotation/count_annotator.py -> build/lib/gqlib_old/annotation 2023-08-28T18:23:21,640 copying gqlib_old/annotation/count_writer.py -> build/lib/gqlib_old/annotation 2023-08-28T18:23:21,646 copying gqlib_old/annotation/__init__.py -> build/lib/gqlib_old/annotation 2023-08-28T18:23:21,654 creating build/lib/gqlib_old/counters 2023-08-28T18:23:21,657 copying gqlib_old/counters/coverage_counter.py -> build/lib/gqlib_old/counters 2023-08-28T18:23:21,662 copying gqlib_old/counters/alignment_counter.py -> build/lib/gqlib_old/counters 2023-08-28T18:23:21,667 copying gqlib_old/counters/count_manager.py -> build/lib/gqlib_old/counters 2023-08-28T18:23:21,672 copying gqlib_old/counters/seq_counter.py -> build/lib/gqlib_old/counters 2023-08-28T18:23:21,676 copying gqlib_old/counters/__init__.py -> build/lib/gqlib_old/counters 2023-08-28T18:23:21,681 copying gqlib_old/counters/region_counter.py -> build/lib/gqlib_old/counters 2023-08-28T18:23:21,688 creating build/lib/gqlib_old/bin 2023-08-28T18:23:21,691 copying gqlib_old/bin/build_bed_database.py -> build/lib/gqlib_old/bin 2023-08-28T18:23:21,698 copying gqlib_old/bin/build_custom_database.py -> build/lib/gqlib_old/bin 2023-08-28T18:23:21,703 copying gqlib_old/bin/build_gene_database.py -> build/lib/gqlib_old/bin 2023-08-28T18:23:21,709 copying gqlib_old/bin/split_table.py -> build/lib/gqlib_old/bin 2023-08-28T18:23:21,713 copying gqlib_old/bin/collate_studies.py -> build/lib/gqlib_old/bin 2023-08-28T18:23:21,718 copying gqlib_old/bin/collate_counts.py -> build/lib/gqlib_old/bin 2023-08-28T18:23:21,723 copying gqlib_old/bin/__init__.py -> build/lib/gqlib_old/bin 2023-08-28T18:23:21,727 copying gqlib_old/bin/build_domain_database.py -> build/lib/gqlib_old/bin 2023-08-28T18:23:21,734 creating build/lib/gqlib_old/db 2023-08-28T18:23:21,737 copying gqlib_old/db/db_import.py -> build/lib/gqlib_old/db 2023-08-28T18:23:21,744 copying gqlib_old/db/annotation_db.py -> build/lib/gqlib_old/db 2023-08-28T18:23:21,748 copying gqlib_old/db/database.py -> build/lib/gqlib_old/db 2023-08-28T18:23:21,751 copying gqlib_old/db/gff_dbm.py -> build/lib/gqlib_old/db 2023-08-28T18:23:21,755 copying gqlib_old/db/__init__.py -> build/lib/gqlib_old/db 2023-08-28T18:23:21,760 creating build/lib/gqlib_old/alignment 2023-08-28T18:23:21,762 copying gqlib_old/alignment/pysam_alignment_processor.py -> build/lib/gqlib_old/alignment 2023-08-28T18:23:21,767 copying gqlib_old/alignment/bamreader.py -> build/lib/gqlib_old/alignment 2023-08-28T18:23:21,771 copying gqlib_old/alignment/__init__.py -> build/lib/gqlib_old/alignment 2023-08-28T18:23:21,775 copying gqlib_old/alignment/aln_group.py -> build/lib/gqlib_old/alignment 2023-08-28T18:23:21,780 creating build/lib/gqlib_old/profilers 2023-08-28T18:23:21,782 copying gqlib_old/profilers/feature_quantifier.py -> build/lib/gqlib_old/profilers 2023-08-28T18:23:21,787 copying gqlib_old/profilers/region_quantifier.py -> build/lib/gqlib_old/profilers 2023-08-28T18:23:21,792 copying gqlib_old/profilers/gene_quantifier.py -> build/lib/gqlib_old/profilers 2023-08-28T18:23:21,795 copying gqlib_old/profilers/__init__.py -> build/lib/gqlib_old/profilers 2023-08-28T18:23:21,800 creating build/lib/gqlib_old/db/models 2023-08-28T18:23:21,802 copying gqlib_old/db/models/db.py -> build/lib/gqlib_old/db/models 2023-08-28T18:23:21,807 copying gqlib_old/db/models/meta.py -> build/lib/gqlib_old/db/models 2023-08-28T18:23:21,810 copying gqlib_old/db/models/__init__.py -> build/lib/gqlib_old/db/models 2023-08-28T18:23:21,813 running egg_info 2023-08-28T18:23:21,990 writing gqlib.egg-info/PKG-INFO 2023-08-28T18:23:21,995 writing dependency_links to gqlib.egg-info/dependency_links.txt 2023-08-28T18:23:22,000 writing requirements to gqlib.egg-info/requires.txt 2023-08-28T18:23:22,002 writing top-level names to gqlib.egg-info/top_level.txt 2023-08-28T18:23:22,112 reading manifest file 'gqlib.egg-info/SOURCES.txt' 2023-08-28T18:23:22,120 reading manifest template 'MANIFEST.in' 2023-08-28T18:23:22,132 adding license file 'LICENSE' 2023-08-28T18:23:22,137 writing manifest file 'gqlib.egg-info/SOURCES.txt' 2023-08-28T18:23:22,257 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-08-28T18:23:22,258 !! 2023-08-28T18:23:22,258 ******************************************************************************** 2023-08-28T18:23:22,259 Please avoid running ``setup.py`` directly. 2023-08-28T18:23:22,259 Instead, use pypa/build, pypa/installer, pypa/build or 2023-08-28T18:23:22,259 other standards-based tools. 2023-08-28T18:23:22,260 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-08-28T18:23:22,260 ******************************************************************************** 2023-08-28T18:23:22,261 !! 2023-08-28T18:23:22,262 self.initialize_options() 2023-08-28T18:23:22,338 installing to build/bdist.linux-armv7l/wheel 2023-08-28T18:23:22,339 running install 2023-08-28T18:23:22,398 running install_lib 2023-08-28T18:23:22,483 creating build/bdist.linux-armv7l 2023-08-28T18:23:22,484 creating build/bdist.linux-armv7l/wheel 2023-08-28T18:23:22,487 creating build/bdist.linux-armv7l/wheel/gqlib 2023-08-28T18:23:22,491 creating build/bdist.linux-armv7l/wheel/gqlib/runners 2023-08-28T18:23:22,493 copying build/lib/gqlib/runners/alignment_runner.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-08-28T18:23:22,497 copying build/lib/gqlib/runners/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-08-28T18:23:22,502 creating build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-08-28T18:23:22,503 copying build/lib/gqlib/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-08-28T18:23:22,509 copying build/lib/gqlib/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-08-28T18:23:22,513 copying build/lib/gqlib/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-08-28T18:23:22,517 creating build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-28T18:23:22,519 copying build/lib/gqlib/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-28T18:23:22,523 copying build/lib/gqlib/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-28T18:23:22,528 copying build/lib/gqlib/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-28T18:23:22,531 copying build/lib/gqlib/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-28T18:23:22,535 copying build/lib/gqlib/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-28T18:23:22,539 creating build/bdist.linux-armv7l/wheel/gqlib/ui 2023-08-28T18:23:22,541 copying build/lib/gqlib/ui/validation.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-08-28T18:23:22,545 copying build/lib/gqlib/ui/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-08-28T18:23:22,549 creating build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,551 copying build/lib/gqlib/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,555 copying build/lib/gqlib/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,559 copying build/lib/gqlib/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,563 copying build/lib/gqlib/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,567 copying build/lib/gqlib/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,571 copying build/lib/gqlib/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,575 copying build/lib/gqlib/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,579 copying build/lib/gqlib/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,583 copying build/lib/gqlib/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-28T18:23:22,587 copying build/lib/gqlib/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-08-28T18:23:22,591 copying build/lib/gqlib/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-08-28T18:23:22,596 copying build/lib/gqlib/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-08-28T18:23:22,600 creating build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-28T18:23:22,601 copying build/lib/gqlib/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-28T18:23:22,606 copying build/lib/gqlib/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-28T18:23:22,610 copying build/lib/gqlib/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-28T18:23:22,613 copying build/lib/gqlib/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-28T18:23:22,618 creating build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-08-28T18:23:22,620 copying build/lib/gqlib/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-08-28T18:23:22,624 copying build/lib/gqlib/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-08-28T18:23:22,628 copying build/lib/gqlib/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-08-28T18:23:22,631 copying build/lib/gqlib/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-28T18:23:22,635 creating build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-28T18:23:22,637 copying build/lib/gqlib/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-28T18:23:22,641 copying build/lib/gqlib/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-28T18:23:22,646 copying build/lib/gqlib/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-28T18:23:22,649 copying build/lib/gqlib/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-28T18:23:22,654 creating build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-28T18:23:22,656 copying build/lib/gqlib/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-28T18:23:22,661 copying build/lib/gqlib/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-28T18:23:22,665 copying build/lib/gqlib/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-28T18:23:22,668 copying build/lib/gqlib/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-28T18:23:22,674 creating build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-28T18:23:22,676 creating build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-08-28T18:23:22,678 copying build/lib/gqlib_old/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-08-28T18:23:22,684 copying build/lib/gqlib_old/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-08-28T18:23:22,688 copying build/lib/gqlib_old/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-08-28T18:23:22,692 copying build/lib/gqlib_old/overlap_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-28T18:23:22,698 creating build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-28T18:23:22,700 copying build/lib/gqlib_old/counters/coverage_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-28T18:23:22,704 copying build/lib/gqlib_old/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-28T18:23:22,707 copying build/lib/gqlib_old/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-28T18:23:22,711 copying build/lib/gqlib_old/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-28T18:23:22,715 copying build/lib/gqlib_old/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-28T18:23:22,718 copying build/lib/gqlib_old/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-28T18:23:22,723 creating build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,725 copying build/lib/gqlib_old/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,729 copying build/lib/gqlib_old/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,733 copying build/lib/gqlib_old/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,737 copying build/lib/gqlib_old/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,741 copying build/lib/gqlib_old/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,745 copying build/lib/gqlib_old/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,749 copying build/lib/gqlib_old/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,752 copying build/lib/gqlib_old/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-28T18:23:22,756 copying build/lib/gqlib_old/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-28T18:23:22,760 copying build/lib/gqlib_old/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-28T18:23:22,764 copying build/lib/gqlib_old/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-28T18:23:22,768 creating build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-28T18:23:22,770 copying build/lib/gqlib_old/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-28T18:23:22,774 copying build/lib/gqlib_old/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-28T18:23:22,779 copying build/lib/gqlib_old/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-28T18:23:22,782 copying build/lib/gqlib_old/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-28T18:23:22,787 creating build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-08-28T18:23:22,789 copying build/lib/gqlib_old/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-08-28T18:23:22,793 copying build/lib/gqlib_old/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-08-28T18:23:22,796 copying build/lib/gqlib_old/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-08-28T18:23:22,799 copying build/lib/gqlib_old/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-28T18:23:22,804 creating build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-28T18:23:22,805 copying build/lib/gqlib_old/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-28T18:23:22,810 copying build/lib/gqlib_old/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-28T18:23:22,815 copying build/lib/gqlib_old/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-28T18:23:22,818 copying build/lib/gqlib_old/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-28T18:23:22,823 creating build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-28T18:23:22,825 copying build/lib/gqlib_old/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-28T18:23:22,830 copying build/lib/gqlib_old/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-28T18:23:22,834 copying build/lib/gqlib_old/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-28T18:23:22,837 copying build/lib/gqlib_old/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-28T18:23:22,840 running install_egg_info 2023-08-28T18:23:22,932 Copying gqlib.egg-info to build/bdist.linux-armv7l/wheel/gqlib-2.12.2-py3.7.egg-info 2023-08-28T18:23:22,956 running install_scripts 2023-08-28T18:23:22,985 creating build/bdist.linux-armv7l/wheel/gqlib-2.12.2.dist-info/WHEEL 2023-08-28T18:23:22,989 creating '/tmp/pip-wheel-x6gveike/gqlib-2.12.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-28T18:23:22,995 adding 'gqlib/__init__.py' 2023-08-28T18:23:22,998 adding 'gqlib/__main__.py' 2023-08-28T18:23:23,002 adding 'gqlib/handle_args.py' 2023-08-28T18:23:23,006 adding 'gqlib/alignment/__init__.py' 2023-08-28T18:23:23,008 adding 'gqlib/alignment/aln_group.py' 2023-08-28T18:23:23,014 adding 'gqlib/alignment/bamreader.py' 2023-08-28T18:23:23,017 adding 'gqlib/alignment/pysam_alignment_processor.py' 2023-08-28T18:23:23,020 adding 'gqlib/annotation/__init__.py' 2023-08-28T18:23:23,025 adding 'gqlib/annotation/count_annotator.py' 2023-08-28T18:23:23,028 adding 'gqlib/annotation/count_writer.py' 2023-08-28T18:23:23,032 adding 'gqlib/bin/__init__.py' 2023-08-28T18:23:23,035 adding 'gqlib/bin/build_bed_database.py' 2023-08-28T18:23:23,039 adding 'gqlib/bin/build_custom_database.py' 2023-08-28T18:23:23,042 adding 'gqlib/bin/build_domain_database.py' 2023-08-28T18:23:23,046 adding 'gqlib/bin/build_gene_database.py' 2023-08-28T18:23:23,049 adding 'gqlib/bin/collate_counts.py' 2023-08-28T18:23:23,053 adding 'gqlib/bin/collate_studies.py' 2023-08-28T18:23:23,056 adding 'gqlib/bin/db_collate.py' 2023-08-28T18:23:23,059 adding 'gqlib/bin/split_table.py' 2023-08-28T18:23:23,062 adding 'gqlib/counters/__init__.py' 2023-08-28T18:23:23,065 adding 'gqlib/counters/alignment_counter.py' 2023-08-28T18:23:23,068 adding 'gqlib/counters/count_manager.py' 2023-08-28T18:23:23,071 adding 'gqlib/counters/region_counter.py' 2023-08-28T18:23:23,073 adding 'gqlib/counters/seq_counter.py' 2023-08-28T18:23:23,077 adding 'gqlib/db/__init__.py' 2023-08-28T18:23:23,080 adding 'gqlib/db/annotation_db.py' 2023-08-28T18:23:23,083 adding 'gqlib/db/database.py' 2023-08-28T18:23:23,086 adding 'gqlib/db/db_import.py' 2023-08-28T18:23:23,090 adding 'gqlib/db/gff_dbm.py' 2023-08-28T18:23:23,093 adding 'gqlib/db/models/__init__.py' 2023-08-28T18:23:23,096 adding 'gqlib/db/models/db.py' 2023-08-28T18:23:23,098 adding 'gqlib/db/models/meta.py' 2023-08-28T18:23:23,101 adding 'gqlib/profilers/__init__.py' 2023-08-28T18:23:23,106 adding 'gqlib/profilers/feature_quantifier.py' 2023-08-28T18:23:23,109 adding 'gqlib/profilers/gene_quantifier.py' 2023-08-28T18:23:23,112 adding 'gqlib/profilers/region_quantifier.py' 2023-08-28T18:23:23,116 adding 'gqlib/runners/__init__.py' 2023-08-28T18:23:23,119 adding 'gqlib/runners/alignment_runner.py' 2023-08-28T18:23:23,122 adding 'gqlib/ui/__init__.py' 2023-08-28T18:23:23,125 adding 'gqlib/ui/validation.py' 2023-08-28T18:23:23,130 adding 'gqlib_old/__init__.py' 2023-08-28T18:23:23,133 adding 'gqlib_old/__main__.py' 2023-08-28T18:23:23,136 adding 'gqlib_old/handle_args.py' 2023-08-28T18:23:23,144 adding 'gqlib_old/overlap_counter.py' 2023-08-28T18:23:23,148 adding 'gqlib_old/alignment/__init__.py' 2023-08-28T18:23:23,151 adding 'gqlib_old/alignment/aln_group.py' 2023-08-28T18:23:23,156 adding 'gqlib_old/alignment/bamreader.py' 2023-08-28T18:23:23,159 adding 'gqlib_old/alignment/pysam_alignment_processor.py' 2023-08-28T18:23:23,163 adding 'gqlib_old/annotation/__init__.py' 2023-08-28T18:23:23,167 adding 'gqlib_old/annotation/count_annotator.py' 2023-08-28T18:23:23,172 adding 'gqlib_old/annotation/count_writer.py' 2023-08-28T18:23:23,176 adding 'gqlib_old/bin/__init__.py' 2023-08-28T18:23:23,179 adding 'gqlib_old/bin/build_bed_database.py' 2023-08-28T18:23:23,183 adding 'gqlib_old/bin/build_custom_database.py' 2023-08-28T18:23:23,186 adding 'gqlib_old/bin/build_domain_database.py' 2023-08-28T18:23:23,189 adding 'gqlib_old/bin/build_gene_database.py' 2023-08-28T18:23:23,193 adding 'gqlib_old/bin/collate_counts.py' 2023-08-28T18:23:23,195 adding 'gqlib_old/bin/collate_studies.py' 2023-08-28T18:23:23,198 adding 'gqlib_old/bin/split_table.py' 2023-08-28T18:23:23,202 adding 'gqlib_old/counters/__init__.py' 2023-08-28T18:23:23,205 adding 'gqlib_old/counters/alignment_counter.py' 2023-08-28T18:23:23,208 adding 'gqlib_old/counters/count_manager.py' 2023-08-28T18:23:23,211 adding 'gqlib_old/counters/coverage_counter.py' 2023-08-28T18:23:23,214 adding 'gqlib_old/counters/region_counter.py' 2023-08-28T18:23:23,216 adding 'gqlib_old/counters/seq_counter.py' 2023-08-28T18:23:23,220 adding 'gqlib_old/db/__init__.py' 2023-08-28T18:23:23,223 adding 'gqlib_old/db/annotation_db.py' 2023-08-28T18:23:23,226 adding 'gqlib_old/db/database.py' 2023-08-28T18:23:23,229 adding 'gqlib_old/db/db_import.py' 2023-08-28T18:23:23,232 adding 'gqlib_old/db/gff_dbm.py' 2023-08-28T18:23:23,236 adding 'gqlib_old/db/models/__init__.py' 2023-08-28T18:23:23,238 adding 'gqlib_old/db/models/db.py' 2023-08-28T18:23:23,240 adding 'gqlib_old/db/models/meta.py' 2023-08-28T18:23:23,244 adding 'gqlib_old/profilers/__init__.py' 2023-08-28T18:23:23,248 adding 'gqlib_old/profilers/feature_quantifier.py' 2023-08-28T18:23:23,251 adding 'gqlib_old/profilers/gene_quantifier.py' 2023-08-28T18:23:23,254 adding 'gqlib_old/profilers/region_quantifier.py' 2023-08-28T18:23:23,257 adding 'gqlib-2.12.2.dist-info/LICENSE' 2023-08-28T18:23:23,259 adding 'gqlib-2.12.2.dist-info/METADATA' 2023-08-28T18:23:23,261 adding 'gqlib-2.12.2.dist-info/WHEEL' 2023-08-28T18:23:23,263 adding 'gqlib-2.12.2.dist-info/top_level.txt' 2023-08-28T18:23:23,267 adding 'gqlib-2.12.2.dist-info/RECORD' 2023-08-28T18:23:23,275 removing build/bdist.linux-armv7l/wheel 2023-08-28T18:23:23,481 Building wheel for gqlib (setup.py): finished with status 'done' 2023-08-28T18:23:23,491 Created wheel for gqlib: filename=gqlib-2.12.2-py3-none-any.whl size=105716 sha256=0f647a2d442d1b4b2c523c7e2193362bfe81d4aba376bf2bbece35717eebd174 2023-08-28T18:23:23,494 Stored in directory: /tmp/pip-ephem-wheel-cache-aw5ue1_5/wheels/d9/30/d5/74332ab83c0843eb21bcf07c6304fa9341314892ab947e2136 2023-08-28T18:23:23,525 Successfully built gqlib 2023-08-28T18:23:23,540 Removed build tracker: '/tmp/pip-build-tracker-s27wkawm'