2023-08-31T08:43:16,015 Created temporary directory: /tmp/pip-build-tracker-1kvn4522 2023-08-31T08:43:16,018 Initialized build tracking at /tmp/pip-build-tracker-1kvn4522 2023-08-31T08:43:16,018 Created build tracker: /tmp/pip-build-tracker-1kvn4522 2023-08-31T08:43:16,019 Entered build tracker: /tmp/pip-build-tracker-1kvn4522 2023-08-31T08:43:16,020 Created temporary directory: /tmp/pip-wheel-g5u1cbka 2023-08-31T08:43:16,028 Created temporary directory: /tmp/pip-ephem-wheel-cache-xthnz2jt 2023-08-31T08:43:16,080 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-08-31T08:43:16,088 2 location(s) to search for versions of gqlib: 2023-08-31T08:43:16,088 * https://pypi.org/simple/gqlib/ 2023-08-31T08:43:16,088 * https://www.piwheels.org/simple/gqlib/ 2023-08-31T08:43:16,089 Fetching project page and analyzing links: https://pypi.org/simple/gqlib/ 2023-08-31T08:43:16,090 Getting page https://pypi.org/simple/gqlib/ 2023-08-31T08:43:16,095 Found index url https://pypi.org/simple/ 2023-08-31T08:43:16,279 Fetched page https://pypi.org/simple/gqlib/ as application/vnd.pypi.simple.v1+json 2023-08-31T08:43:16,283 Found link https://files.pythonhosted.org/packages/a5/26/1fb85708574f429a67cf7ebd09819706893e408c693c867248098c8b6bb2/gqlib-2.9.9.3.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.9.9.3 2023-08-31T08:43:16,284 Found link https://files.pythonhosted.org/packages/0d/5a/694f5a2ea4ee7048c32cdd2cb69c7f4835e5d8a43328f762434b770b7cfb/gqlib-2.10.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.10.0 2023-08-31T08:43:16,284 Found link https://files.pythonhosted.org/packages/18/a3/f599a42c49499622e4dddc2d7b9c699a728dee1ccead4bac6055ae72d9c1/gqlib-2.12.1.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.1 2023-08-31T08:43:16,285 Found link https://files.pythonhosted.org/packages/1f/8f/6b224c68d14f0d2a28f2c100b23214d1c2abd2f3113e793d9057c70a328f/gqlib-2.12.2.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.12.2 2023-08-31T08:43:16,285 Found link https://files.pythonhosted.org/packages/56/c9/8505d1ca91e50808f079bea1a13c2b9c9d3d873ac99b38d674a471e20812/gqlib-2.13.0.tar.gz (from https://pypi.org/simple/gqlib/), version: 2.13.0 2023-08-31T08:43:16,286 Fetching project page and analyzing links: https://www.piwheels.org/simple/gqlib/ 2023-08-31T08:43:16,287 Getting page https://www.piwheels.org/simple/gqlib/ 2023-08-31T08:43:16,289 Found index url https://www.piwheels.org/simple/ 2023-08-31T08:43:16,514 Fetched page https://www.piwheels.org/simple/gqlib/ as text/html 2023-08-31T08:43:16,519 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.2-py3-none-any.whl#sha256=0f647a2d442d1b4b2c523c7e2193362bfe81d4aba376bf2bbece35717eebd174 (from https://www.piwheels.org/simple/gqlib/) 2023-08-31T08:43:16,519 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.12.1-py3-none-any.whl#sha256=f1fb244343d7ea0235837d6a1bd7c60c95f6755b1a2b831691e04f851b4e551b (from https://www.piwheels.org/simple/gqlib/) 2023-08-31T08:43:16,520 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.10.0-py3-none-any.whl#sha256=393b7dc20a4d91ae690b4799f687ff2522c749d97cad0f98bf305f2817b1c0ea (from https://www.piwheels.org/simple/gqlib/) 2023-08-31T08:43:16,520 Skipping link: No binaries permitted for gqlib: https://www.piwheels.org/simple/gqlib/gqlib-2.9.9.3-py3-none-any.whl#sha256=2bd1fb961af8b28506ae8b437d5b9e7a5a5f0f88b956679b48a458e056fe35e9 (from https://www.piwheels.org/simple/gqlib/) 2023-08-31T08:43:16,521 Skipping link: not a file: https://www.piwheels.org/simple/gqlib/ 2023-08-31T08:43:16,521 Skipping link: not a file: https://pypi.org/simple/gqlib/ 2023-08-31T08:43:16,555 Given no hashes to check 1 links for project 'gqlib': discarding no candidates 2023-08-31T08:43:16,585 Collecting gqlib==2.13.0 2023-08-31T08:43:16,590 Created temporary directory: /tmp/pip-unpack-0os3m8ge 2023-08-31T08:43:16,772 Downloading gqlib-2.13.0.tar.gz (74 kB) 2023-08-31T08:43:17,252 Added gqlib==2.13.0 from https://files.pythonhosted.org/packages/56/c9/8505d1ca91e50808f079bea1a13c2b9c9d3d873ac99b38d674a471e20812/gqlib-2.13.0.tar.gz to build tracker '/tmp/pip-build-tracker-1kvn4522' 2023-08-31T08:43:17,256 Running setup.py (path:/tmp/pip-wheel-g5u1cbka/gqlib_6e5cb7ea5c964828815706370195a4a5/setup.py) egg_info for package gqlib 2023-08-31T08:43:17,257 Created temporary directory: /tmp/pip-pip-egg-info-igyq4tvd 2023-08-31T08:43:17,258 Preparing metadata (setup.py): started 2023-08-31T08:43:17,260 Running command python setup.py egg_info 2023-08-31T08:43:18,921 running egg_info 2023-08-31T08:43:18,924 creating /tmp/pip-pip-egg-info-igyq4tvd/gqlib.egg-info 2023-08-31T08:43:19,004 writing /tmp/pip-pip-egg-info-igyq4tvd/gqlib.egg-info/PKG-INFO 2023-08-31T08:43:19,009 writing dependency_links to /tmp/pip-pip-egg-info-igyq4tvd/gqlib.egg-info/dependency_links.txt 2023-08-31T08:43:19,014 writing requirements to /tmp/pip-pip-egg-info-igyq4tvd/gqlib.egg-info/requires.txt 2023-08-31T08:43:19,016 writing top-level names to /tmp/pip-pip-egg-info-igyq4tvd/gqlib.egg-info/top_level.txt 2023-08-31T08:43:19,019 writing manifest file '/tmp/pip-pip-egg-info-igyq4tvd/gqlib.egg-info/SOURCES.txt' 2023-08-31T08:43:19,289 reading manifest file '/tmp/pip-pip-egg-info-igyq4tvd/gqlib.egg-info/SOURCES.txt' 2023-08-31T08:43:19,292 reading manifest template 'MANIFEST.in' 2023-08-31T08:43:19,294 adding license file 'LICENSE' 2023-08-31T08:43:19,306 writing manifest file '/tmp/pip-pip-egg-info-igyq4tvd/gqlib.egg-info/SOURCES.txt' 2023-08-31T08:43:19,308 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-31T08:43:19,308 !! 2023-08-31T08:43:19,309 ******************************************************************************** 2023-08-31T08:43:19,309 Usage of dash-separated 'description-file' will not be supported in future 2023-08-31T08:43:19,310 versions. Please use the underscore name 'description_file' instead. 2023-08-31T08:43:19,310 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-31T08:43:19,311 or your builds will no longer be supported. 2023-08-31T08:43:19,312 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-31T08:43:19,312 ******************************************************************************** 2023-08-31T08:43:19,313 !! 2023-08-31T08:43:19,314 opt = self.warn_dash_deprecation(opt, section) 2023-08-31T08:43:19,427 Preparing metadata (setup.py): finished with status 'done' 2023-08-31T08:43:19,440 Source in /tmp/pip-wheel-g5u1cbka/gqlib_6e5cb7ea5c964828815706370195a4a5 has version 2.13.0, which satisfies requirement gqlib==2.13.0 from https://files.pythonhosted.org/packages/56/c9/8505d1ca91e50808f079bea1a13c2b9c9d3d873ac99b38d674a471e20812/gqlib-2.13.0.tar.gz 2023-08-31T08:43:19,442 Removed gqlib==2.13.0 from https://files.pythonhosted.org/packages/56/c9/8505d1ca91e50808f079bea1a13c2b9c9d3d873ac99b38d674a471e20812/gqlib-2.13.0.tar.gz from build tracker '/tmp/pip-build-tracker-1kvn4522' 2023-08-31T08:43:19,452 Created temporary directory: /tmp/pip-unpack-s94rbjfr 2023-08-31T08:43:19,454 Building wheels for collected packages: gqlib 2023-08-31T08:43:19,462 Created temporary directory: /tmp/pip-wheel-wixzp7d_ 2023-08-31T08:43:19,463 Building wheel for gqlib (setup.py): started 2023-08-31T08:43:19,465 Destination directory: /tmp/pip-wheel-wixzp7d_ 2023-08-31T08:43:19,465 Running command python setup.py bdist_wheel 2023-08-31T08:43:20,692 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-08-31T08:43:20,694 !! 2023-08-31T08:43:20,695 ******************************************************************************** 2023-08-31T08:43:20,695 Usage of dash-separated 'description-file' will not be supported in future 2023-08-31T08:43:20,695 versions. Please use the underscore name 'description_file' instead. 2023-08-31T08:43:20,696 By 2023-Sep-26, you need to update your project and remove deprecated calls 2023-08-31T08:43:20,696 or your builds will no longer be supported. 2023-08-31T08:43:20,697 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-08-31T08:43:20,697 ******************************************************************************** 2023-08-31T08:43:20,698 !! 2023-08-31T08:43:20,698 opt = self.warn_dash_deprecation(opt, section) 2023-08-31T08:43:21,186 running bdist_wheel 2023-08-31T08:43:21,964 running build 2023-08-31T08:43:21,965 running build_py 2023-08-31T08:43:22,054 creating build 2023-08-31T08:43:22,055 creating build/lib 2023-08-31T08:43:22,057 creating build/lib/gqlib 2023-08-31T08:43:22,060 copying gqlib/__main__.py -> build/lib/gqlib 2023-08-31T08:43:22,065 copying gqlib/handle_args.py -> build/lib/gqlib 2023-08-31T08:43:22,070 copying gqlib/__init__.py -> build/lib/gqlib 2023-08-31T08:43:22,075 creating build/lib/gqlib_old 2023-08-31T08:43:22,077 copying gqlib_old/__main__.py -> build/lib/gqlib_old 2023-08-31T08:43:22,082 copying gqlib_old/handle_args.py -> build/lib/gqlib_old 2023-08-31T08:43:22,087 copying gqlib_old/__init__.py -> build/lib/gqlib_old 2023-08-31T08:43:22,092 creating build/lib/gqlib/runners 2023-08-31T08:43:22,094 copying gqlib/runners/alignment_runner.py -> build/lib/gqlib/runners 2023-08-31T08:43:22,098 copying gqlib/runners/__init__.py -> build/lib/gqlib/runners 2023-08-31T08:43:22,103 creating build/lib/gqlib/annotation 2023-08-31T08:43:22,106 copying gqlib/annotation/count_annotator.py -> build/lib/gqlib/annotation 2023-08-31T08:43:22,111 copying gqlib/annotation/count_writer.py -> build/lib/gqlib/annotation 2023-08-31T08:43:22,116 copying gqlib/annotation/__init__.py -> build/lib/gqlib/annotation 2023-08-31T08:43:22,122 creating build/lib/gqlib/counters 2023-08-31T08:43:22,125 copying gqlib/counters/alignment_counter.py -> build/lib/gqlib/counters 2023-08-31T08:43:22,129 copying gqlib/counters/count_manager.py -> build/lib/gqlib/counters 2023-08-31T08:43:22,134 copying gqlib/counters/seq_counter.py -> build/lib/gqlib/counters 2023-08-31T08:43:22,138 copying gqlib/counters/__init__.py -> build/lib/gqlib/counters 2023-08-31T08:43:22,143 copying gqlib/counters/region_counter.py -> build/lib/gqlib/counters 2023-08-31T08:43:22,148 creating build/lib/gqlib/ui 2023-08-31T08:43:22,151 copying gqlib/ui/validation.py -> build/lib/gqlib/ui 2023-08-31T08:43:22,155 copying gqlib/ui/__init__.py -> build/lib/gqlib/ui 2023-08-31T08:43:22,160 creating build/lib/gqlib/bin 2023-08-31T08:43:22,163 copying gqlib/bin/build_bed_database.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,168 copying gqlib/bin/build_custom_database.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,173 copying gqlib/bin/build_gene_database.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,178 copying gqlib/bin/split_table.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,182 copying gqlib/bin/collate_studies.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,186 copying gqlib/bin/collate_counts.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,190 copying gqlib/bin/db_collate.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,194 copying gqlib/bin/__init__.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,198 copying gqlib/bin/build_domain_database.py -> build/lib/gqlib/bin 2023-08-31T08:43:22,204 creating build/lib/gqlib/db 2023-08-31T08:43:22,205 copying gqlib/db/db_import.py -> build/lib/gqlib/db 2023-08-31T08:43:22,210 copying gqlib/db/annotation_db.py -> build/lib/gqlib/db 2023-08-31T08:43:22,215 copying gqlib/db/database.py -> build/lib/gqlib/db 2023-08-31T08:43:22,218 copying gqlib/db/gff_dbm.py -> build/lib/gqlib/db 2023-08-31T08:43:22,222 copying gqlib/db/__init__.py -> build/lib/gqlib/db 2023-08-31T08:43:22,227 creating build/lib/gqlib/alignment 2023-08-31T08:43:22,229 copying gqlib/alignment/pysam_alignment_processor.py -> build/lib/gqlib/alignment 2023-08-31T08:43:22,233 copying gqlib/alignment/bamreader.py -> build/lib/gqlib/alignment 2023-08-31T08:43:22,237 copying gqlib/alignment/__init__.py -> build/lib/gqlib/alignment 2023-08-31T08:43:22,241 copying gqlib/alignment/aln_group.py -> build/lib/gqlib/alignment 2023-08-31T08:43:22,246 creating build/lib/gqlib/profilers 2023-08-31T08:43:22,248 copying gqlib/profilers/feature_quantifier.py -> build/lib/gqlib/profilers 2023-08-31T08:43:22,253 copying gqlib/profilers/region_quantifier.py -> build/lib/gqlib/profilers 2023-08-31T08:43:22,258 copying gqlib/profilers/gene_quantifier.py -> build/lib/gqlib/profilers 2023-08-31T08:43:22,261 copying gqlib/profilers/__init__.py -> build/lib/gqlib/profilers 2023-08-31T08:43:22,266 creating build/lib/gqlib/db/models 2023-08-31T08:43:22,267 copying gqlib/db/models/db.py -> build/lib/gqlib/db/models 2023-08-31T08:43:22,272 copying gqlib/db/models/meta.py -> build/lib/gqlib/db/models 2023-08-31T08:43:22,275 copying gqlib/db/models/__init__.py -> build/lib/gqlib/db/models 2023-08-31T08:43:22,279 creating build/lib/gqlib_old/runners 2023-08-31T08:43:22,281 copying gqlib_old/runners/alignment_runner.py -> build/lib/gqlib_old/runners 2023-08-31T08:43:22,285 copying gqlib_old/runners/__init__.py -> build/lib/gqlib_old/runners 2023-08-31T08:43:22,289 creating build/lib/gqlib_old/annotation 2023-08-31T08:43:22,291 copying gqlib_old/annotation/count_annotator.py -> build/lib/gqlib_old/annotation 2023-08-31T08:43:22,296 copying gqlib_old/annotation/count_writer.py -> build/lib/gqlib_old/annotation 2023-08-31T08:43:22,300 copying gqlib_old/annotation/__init__.py -> build/lib/gqlib_old/annotation 2023-08-31T08:43:22,306 creating build/lib/gqlib_old/counters 2023-08-31T08:43:22,308 copying gqlib_old/counters/alignment_counter.py -> build/lib/gqlib_old/counters 2023-08-31T08:43:22,312 copying gqlib_old/counters/count_manager.py -> build/lib/gqlib_old/counters 2023-08-31T08:43:22,317 copying gqlib_old/counters/seq_counter.py -> build/lib/gqlib_old/counters 2023-08-31T08:43:22,320 copying gqlib_old/counters/__init__.py -> build/lib/gqlib_old/counters 2023-08-31T08:43:22,324 copying gqlib_old/counters/region_counter.py -> build/lib/gqlib_old/counters 2023-08-31T08:43:22,329 creating build/lib/gqlib_old/ui 2023-08-31T08:43:22,331 copying gqlib_old/ui/validation.py -> build/lib/gqlib_old/ui 2023-08-31T08:43:22,335 copying gqlib_old/ui/__init__.py -> build/lib/gqlib_old/ui 2023-08-31T08:43:22,340 creating build/lib/gqlib_old/bin 2023-08-31T08:43:22,342 copying gqlib_old/bin/build_bed_database.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,347 copying gqlib_old/bin/build_custom_database.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,351 copying gqlib_old/bin/build_gene_database.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,356 copying gqlib_old/bin/split_table.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,360 copying gqlib_old/bin/collate_studies.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,364 copying gqlib_old/bin/collate_counts.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,369 copying gqlib_old/bin/db_collate.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,373 copying gqlib_old/bin/__init__.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,377 copying gqlib_old/bin/build_domain_database.py -> build/lib/gqlib_old/bin 2023-08-31T08:43:22,382 creating build/lib/gqlib_old/db 2023-08-31T08:43:22,384 copying gqlib_old/db/db_import.py -> build/lib/gqlib_old/db 2023-08-31T08:43:22,389 copying gqlib_old/db/annotation_db.py -> build/lib/gqlib_old/db 2023-08-31T08:43:22,394 copying gqlib_old/db/database.py -> build/lib/gqlib_old/db 2023-08-31T08:43:22,398 copying gqlib_old/db/gff_dbm.py -> build/lib/gqlib_old/db 2023-08-31T08:43:22,403 copying gqlib_old/db/__init__.py -> build/lib/gqlib_old/db 2023-08-31T08:43:22,409 creating build/lib/gqlib_old/alignment 2023-08-31T08:43:22,412 copying gqlib_old/alignment/pysam_alignment_processor.py -> build/lib/gqlib_old/alignment 2023-08-31T08:43:22,416 copying gqlib_old/alignment/bamreader.py -> build/lib/gqlib_old/alignment 2023-08-31T08:43:22,421 copying gqlib_old/alignment/__init__.py -> build/lib/gqlib_old/alignment 2023-08-31T08:43:22,425 copying gqlib_old/alignment/aln_group.py -> build/lib/gqlib_old/alignment 2023-08-31T08:43:22,430 creating build/lib/gqlib_old/profilers 2023-08-31T08:43:22,432 copying gqlib_old/profilers/feature_quantifier.py -> build/lib/gqlib_old/profilers 2023-08-31T08:43:22,438 copying gqlib_old/profilers/region_quantifier.py -> build/lib/gqlib_old/profilers 2023-08-31T08:43:22,442 copying gqlib_old/profilers/gene_quantifier.py -> build/lib/gqlib_old/profilers 2023-08-31T08:43:22,446 copying gqlib_old/profilers/__init__.py -> build/lib/gqlib_old/profilers 2023-08-31T08:43:22,450 creating build/lib/gqlib_old/db/models 2023-08-31T08:43:22,453 copying gqlib_old/db/models/db.py -> build/lib/gqlib_old/db/models 2023-08-31T08:43:22,457 copying gqlib_old/db/models/meta.py -> build/lib/gqlib_old/db/models 2023-08-31T08:43:22,460 copying gqlib_old/db/models/__init__.py -> build/lib/gqlib_old/db/models 2023-08-31T08:43:22,463 running egg_info 2023-08-31T08:43:22,642 writing gqlib.egg-info/PKG-INFO 2023-08-31T08:43:22,646 writing dependency_links to gqlib.egg-info/dependency_links.txt 2023-08-31T08:43:22,651 writing requirements to gqlib.egg-info/requires.txt 2023-08-31T08:43:22,654 writing top-level names to gqlib.egg-info/top_level.txt 2023-08-31T08:43:22,764 reading manifest file 'gqlib.egg-info/SOURCES.txt' 2023-08-31T08:43:22,773 reading manifest template 'MANIFEST.in' 2023-08-31T08:43:22,775 adding license file 'LICENSE' 2023-08-31T08:43:22,790 writing manifest file 'gqlib.egg-info/SOURCES.txt' 2023-08-31T08:43:22,912 /home/piwheels/.local/lib/python3.7/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-08-31T08:43:22,913 !! 2023-08-31T08:43:22,913 ******************************************************************************** 2023-08-31T08:43:22,914 Please avoid running ``setup.py`` directly. 2023-08-31T08:43:22,914 Instead, use pypa/build, pypa/installer, pypa/build or 2023-08-31T08:43:22,914 other standards-based tools. 2023-08-31T08:43:22,915 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-08-31T08:43:22,915 ******************************************************************************** 2023-08-31T08:43:22,916 !! 2023-08-31T08:43:22,917 self.initialize_options() 2023-08-31T08:43:22,996 installing to build/bdist.linux-armv7l/wheel 2023-08-31T08:43:22,996 running install 2023-08-31T08:43:23,058 running install_lib 2023-08-31T08:43:23,151 creating build/bdist.linux-armv7l 2023-08-31T08:43:23,153 creating build/bdist.linux-armv7l/wheel 2023-08-31T08:43:23,158 creating build/bdist.linux-armv7l/wheel/gqlib 2023-08-31T08:43:23,162 creating build/bdist.linux-armv7l/wheel/gqlib/runners 2023-08-31T08:43:23,165 copying build/lib/gqlib/runners/alignment_runner.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-08-31T08:43:23,170 copying build/lib/gqlib/runners/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/runners 2023-08-31T08:43:23,177 creating build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-08-31T08:43:23,180 copying build/lib/gqlib/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-08-31T08:43:23,188 copying build/lib/gqlib/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-08-31T08:43:23,193 copying build/lib/gqlib/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/annotation 2023-08-31T08:43:23,198 creating build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-31T08:43:23,200 copying build/lib/gqlib/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-31T08:43:23,205 copying build/lib/gqlib/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-31T08:43:23,210 copying build/lib/gqlib/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-31T08:43:23,215 copying build/lib/gqlib/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-31T08:43:23,219 copying build/lib/gqlib/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib/counters 2023-08-31T08:43:23,225 creating build/bdist.linux-armv7l/wheel/gqlib/ui 2023-08-31T08:43:23,227 copying build/lib/gqlib/ui/validation.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-08-31T08:43:23,232 copying build/lib/gqlib/ui/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/ui 2023-08-31T08:43:23,237 creating build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,240 copying build/lib/gqlib/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,245 copying build/lib/gqlib/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,250 copying build/lib/gqlib/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,255 copying build/lib/gqlib/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,259 copying build/lib/gqlib/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,263 copying build/lib/gqlib/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,268 copying build/lib/gqlib/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,273 copying build/lib/gqlib/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,277 copying build/lib/gqlib/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib/bin 2023-08-31T08:43:23,282 copying build/lib/gqlib/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-08-31T08:43:23,287 copying build/lib/gqlib/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-08-31T08:43:23,292 copying build/lib/gqlib/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib 2023-08-31T08:43:23,298 creating build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-31T08:43:23,300 copying build/lib/gqlib/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-31T08:43:23,305 copying build/lib/gqlib/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-31T08:43:23,310 copying build/lib/gqlib/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-31T08:43:23,314 copying build/lib/gqlib/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-31T08:43:23,320 creating build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-08-31T08:43:23,322 copying build/lib/gqlib/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-08-31T08:43:23,327 copying build/lib/gqlib/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-08-31T08:43:23,331 copying build/lib/gqlib/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db/models 2023-08-31T08:43:23,335 copying build/lib/gqlib/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/db 2023-08-31T08:43:23,340 creating build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-31T08:43:23,342 copying build/lib/gqlib/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-31T08:43:23,346 copying build/lib/gqlib/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-31T08:43:23,352 copying build/lib/gqlib/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-31T08:43:23,356 copying build/lib/gqlib/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib/alignment 2023-08-31T08:43:23,361 creating build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-31T08:43:23,363 copying build/lib/gqlib/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-31T08:43:23,368 copying build/lib/gqlib/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-31T08:43:23,372 copying build/lib/gqlib/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-31T08:43:23,376 copying build/lib/gqlib/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib/profilers 2023-08-31T08:43:23,380 creating build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-31T08:43:23,383 creating build/bdist.linux-armv7l/wheel/gqlib_old/runners 2023-08-31T08:43:23,385 copying build/lib/gqlib_old/runners/alignment_runner.py -> build/bdist.linux-armv7l/wheel/gqlib_old/runners 2023-08-31T08:43:23,389 copying build/lib/gqlib_old/runners/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/runners 2023-08-31T08:43:23,393 creating build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-08-31T08:43:23,395 copying build/lib/gqlib_old/annotation/count_annotator.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-08-31T08:43:23,399 copying build/lib/gqlib_old/annotation/count_writer.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-08-31T08:43:23,404 copying build/lib/gqlib_old/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/annotation 2023-08-31T08:43:23,408 creating build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-31T08:43:23,410 copying build/lib/gqlib_old/counters/alignment_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-31T08:43:23,414 copying build/lib/gqlib_old/counters/count_manager.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-31T08:43:23,418 copying build/lib/gqlib_old/counters/seq_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-31T08:43:23,421 copying build/lib/gqlib_old/counters/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-31T08:43:23,425 copying build/lib/gqlib_old/counters/region_counter.py -> build/bdist.linux-armv7l/wheel/gqlib_old/counters 2023-08-31T08:43:23,429 creating build/bdist.linux-armv7l/wheel/gqlib_old/ui 2023-08-31T08:43:23,431 copying build/lib/gqlib_old/ui/validation.py -> build/bdist.linux-armv7l/wheel/gqlib_old/ui 2023-08-31T08:43:23,435 copying build/lib/gqlib_old/ui/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/ui 2023-08-31T08:43:23,439 creating build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,441 copying build/lib/gqlib_old/bin/build_bed_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,445 copying build/lib/gqlib_old/bin/build_custom_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,449 copying build/lib/gqlib_old/bin/build_gene_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,453 copying build/lib/gqlib_old/bin/split_table.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,456 copying build/lib/gqlib_old/bin/collate_studies.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,460 copying build/lib/gqlib_old/bin/collate_counts.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,464 copying build/lib/gqlib_old/bin/db_collate.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,468 copying build/lib/gqlib_old/bin/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,471 copying build/lib/gqlib_old/bin/build_domain_database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/bin 2023-08-31T08:43:23,475 copying build/lib/gqlib_old/__main__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-31T08:43:23,479 copying build/lib/gqlib_old/handle_args.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-31T08:43:23,483 copying build/lib/gqlib_old/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old 2023-08-31T08:43:23,487 creating build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-31T08:43:23,489 copying build/lib/gqlib_old/db/db_import.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-31T08:43:23,494 copying build/lib/gqlib_old/db/annotation_db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-31T08:43:23,498 copying build/lib/gqlib_old/db/database.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-31T08:43:23,500 copying build/lib/gqlib_old/db/gff_dbm.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-31T08:43:23,506 creating build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-08-31T08:43:23,507 copying build/lib/gqlib_old/db/models/db.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-08-31T08:43:23,511 copying build/lib/gqlib_old/db/models/meta.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-08-31T08:43:23,515 copying build/lib/gqlib_old/db/models/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db/models 2023-08-31T08:43:23,518 copying build/lib/gqlib_old/db/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/db 2023-08-31T08:43:23,523 creating build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-31T08:43:23,524 copying build/lib/gqlib_old/alignment/pysam_alignment_processor.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-31T08:43:23,528 copying build/lib/gqlib_old/alignment/bamreader.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-31T08:43:23,533 copying build/lib/gqlib_old/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-31T08:43:23,536 copying build/lib/gqlib_old/alignment/aln_group.py -> build/bdist.linux-armv7l/wheel/gqlib_old/alignment 2023-08-31T08:43:23,541 creating build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-31T08:43:23,543 copying build/lib/gqlib_old/profilers/feature_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-31T08:43:23,547 copying build/lib/gqlib_old/profilers/region_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-31T08:43:23,551 copying build/lib/gqlib_old/profilers/gene_quantifier.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-31T08:43:23,555 copying build/lib/gqlib_old/profilers/__init__.py -> build/bdist.linux-armv7l/wheel/gqlib_old/profilers 2023-08-31T08:43:23,558 running install_egg_info 2023-08-31T08:43:23,648 Copying gqlib.egg-info to build/bdist.linux-armv7l/wheel/gqlib-2.13.0-py3.7.egg-info 2023-08-31T08:43:23,670 running install_scripts 2023-08-31T08:43:23,699 creating build/bdist.linux-armv7l/wheel/gqlib-2.13.0.dist-info/WHEEL 2023-08-31T08:43:23,705 creating '/tmp/pip-wheel-wixzp7d_/gqlib-2.13.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-08-31T08:43:23,710 adding 'gqlib/__init__.py' 2023-08-31T08:43:23,713 adding 'gqlib/__main__.py' 2023-08-31T08:43:23,717 adding 'gqlib/handle_args.py' 2023-08-31T08:43:23,721 adding 'gqlib/alignment/__init__.py' 2023-08-31T08:43:23,723 adding 'gqlib/alignment/aln_group.py' 2023-08-31T08:43:23,729 adding 'gqlib/alignment/bamreader.py' 2023-08-31T08:43:23,732 adding 'gqlib/alignment/pysam_alignment_processor.py' 2023-08-31T08:43:23,735 adding 'gqlib/annotation/__init__.py' 2023-08-31T08:43:23,740 adding 'gqlib/annotation/count_annotator.py' 2023-08-31T08:43:23,743 adding 'gqlib/annotation/count_writer.py' 2023-08-31T08:43:23,747 adding 'gqlib/bin/__init__.py' 2023-08-31T08:43:23,750 adding 'gqlib/bin/build_bed_database.py' 2023-08-31T08:43:23,754 adding 'gqlib/bin/build_custom_database.py' 2023-08-31T08:43:23,757 adding 'gqlib/bin/build_domain_database.py' 2023-08-31T08:43:23,761 adding 'gqlib/bin/build_gene_database.py' 2023-08-31T08:43:23,765 adding 'gqlib/bin/collate_counts.py' 2023-08-31T08:43:23,768 adding 'gqlib/bin/collate_studies.py' 2023-08-31T08:43:23,771 adding 'gqlib/bin/db_collate.py' 2023-08-31T08:43:23,775 adding 'gqlib/bin/split_table.py' 2023-08-31T08:43:23,778 adding 'gqlib/counters/__init__.py' 2023-08-31T08:43:23,781 adding 'gqlib/counters/alignment_counter.py' 2023-08-31T08:43:23,784 adding 'gqlib/counters/count_manager.py' 2023-08-31T08:43:23,787 adding 'gqlib/counters/region_counter.py' 2023-08-31T08:43:23,789 adding 'gqlib/counters/seq_counter.py' 2023-08-31T08:43:23,793 adding 'gqlib/db/__init__.py' 2023-08-31T08:43:23,796 adding 'gqlib/db/annotation_db.py' 2023-08-31T08:43:23,798 adding 'gqlib/db/database.py' 2023-08-31T08:43:23,802 adding 'gqlib/db/db_import.py' 2023-08-31T08:43:23,805 adding 'gqlib/db/gff_dbm.py' 2023-08-31T08:43:23,809 adding 'gqlib/db/models/__init__.py' 2023-08-31T08:43:23,812 adding 'gqlib/db/models/db.py' 2023-08-31T08:43:23,814 adding 'gqlib/db/models/meta.py' 2023-08-31T08:43:23,818 adding 'gqlib/profilers/__init__.py' 2023-08-31T08:43:23,822 adding 'gqlib/profilers/feature_quantifier.py' 2023-08-31T08:43:23,825 adding 'gqlib/profilers/gene_quantifier.py' 2023-08-31T08:43:23,828 adding 'gqlib/profilers/region_quantifier.py' 2023-08-31T08:43:23,832 adding 'gqlib/runners/__init__.py' 2023-08-31T08:43:23,834 adding 'gqlib/runners/alignment_runner.py' 2023-08-31T08:43:23,838 adding 'gqlib/ui/__init__.py' 2023-08-31T08:43:23,840 adding 'gqlib/ui/validation.py' 2023-08-31T08:43:23,846 adding 'gqlib_old/__init__.py' 2023-08-31T08:43:23,849 adding 'gqlib_old/__main__.py' 2023-08-31T08:43:23,854 adding 'gqlib_old/handle_args.py' 2023-08-31T08:43:23,857 adding 'gqlib_old/alignment/__init__.py' 2023-08-31T08:43:23,860 adding 'gqlib_old/alignment/aln_group.py' 2023-08-31T08:43:23,865 adding 'gqlib_old/alignment/bamreader.py' 2023-08-31T08:43:23,869 adding 'gqlib_old/alignment/pysam_alignment_processor.py' 2023-08-31T08:43:23,872 adding 'gqlib_old/annotation/__init__.py' 2023-08-31T08:43:23,877 adding 'gqlib_old/annotation/count_annotator.py' 2023-08-31T08:43:23,880 adding 'gqlib_old/annotation/count_writer.py' 2023-08-31T08:43:23,884 adding 'gqlib_old/bin/__init__.py' 2023-08-31T08:43:23,887 adding 'gqlib_old/bin/build_bed_database.py' 2023-08-31T08:43:23,891 adding 'gqlib_old/bin/build_custom_database.py' 2023-08-31T08:43:23,894 adding 'gqlib_old/bin/build_domain_database.py' 2023-08-31T08:43:23,898 adding 'gqlib_old/bin/build_gene_database.py' 2023-08-31T08:43:23,902 adding 'gqlib_old/bin/collate_counts.py' 2023-08-31T08:43:23,905 adding 'gqlib_old/bin/collate_studies.py' 2023-08-31T08:43:23,908 adding 'gqlib_old/bin/db_collate.py' 2023-08-31T08:43:23,911 adding 'gqlib_old/bin/split_table.py' 2023-08-31T08:43:23,915 adding 'gqlib_old/counters/__init__.py' 2023-08-31T08:43:23,917 adding 'gqlib_old/counters/alignment_counter.py' 2023-08-31T08:43:23,921 adding 'gqlib_old/counters/count_manager.py' 2023-08-31T08:43:23,924 adding 'gqlib_old/counters/region_counter.py' 2023-08-31T08:43:23,926 adding 'gqlib_old/counters/seq_counter.py' 2023-08-31T08:43:23,930 adding 'gqlib_old/db/__init__.py' 2023-08-31T08:43:23,933 adding 'gqlib_old/db/annotation_db.py' 2023-08-31T08:43:23,936 adding 'gqlib_old/db/database.py' 2023-08-31T08:43:23,939 adding 'gqlib_old/db/db_import.py' 2023-08-31T08:43:23,943 adding 'gqlib_old/db/gff_dbm.py' 2023-08-31T08:43:23,946 adding 'gqlib_old/db/models/__init__.py' 2023-08-31T08:43:23,949 adding 'gqlib_old/db/models/db.py' 2023-08-31T08:43:23,951 adding 'gqlib_old/db/models/meta.py' 2023-08-31T08:43:23,955 adding 'gqlib_old/profilers/__init__.py' 2023-08-31T08:43:23,960 adding 'gqlib_old/profilers/feature_quantifier.py' 2023-08-31T08:43:23,963 adding 'gqlib_old/profilers/gene_quantifier.py' 2023-08-31T08:43:23,966 adding 'gqlib_old/profilers/region_quantifier.py' 2023-08-31T08:43:23,969 adding 'gqlib_old/runners/__init__.py' 2023-08-31T08:43:23,972 adding 'gqlib_old/runners/alignment_runner.py' 2023-08-31T08:43:23,975 adding 'gqlib_old/ui/__init__.py' 2023-08-31T08:43:23,978 adding 'gqlib_old/ui/validation.py' 2023-08-31T08:43:23,980 adding 'gqlib-2.13.0.dist-info/LICENSE' 2023-08-31T08:43:23,983 adding 'gqlib-2.13.0.dist-info/METADATA' 2023-08-31T08:43:23,984 adding 'gqlib-2.13.0.dist-info/WHEEL' 2023-08-31T08:43:23,986 adding 'gqlib-2.13.0.dist-info/top_level.txt' 2023-08-31T08:43:23,990 adding 'gqlib-2.13.0.dist-info/RECORD' 2023-08-31T08:43:23,998 removing build/bdist.linux-armv7l/wheel 2023-08-31T08:43:24,205 Building wheel for gqlib (setup.py): finished with status 'done' 2023-08-31T08:43:24,215 Created wheel for gqlib: filename=gqlib-2.13.0-py3-none-any.whl size=105405 sha256=dfafe4e4b53c04fb1a60312eb30a983e8031ffc28ce6891f90fb0b4cdf99de0f 2023-08-31T08:43:24,218 Stored in directory: /tmp/pip-ephem-wheel-cache-xthnz2jt/wheels/92/de/63/d4514ff4997f9e4f58fdd5305569c05daa62df4fb3e47b4566 2023-08-31T08:43:24,250 Successfully built gqlib 2023-08-31T08:43:24,269 Removed build tracker: '/tmp/pip-build-tracker-1kvn4522'