2023-09-01T11:50:51,247 Created temporary directory: /tmp/pip-build-tracker-0dyqv6ak
2023-09-01T11:50:51,248 Initialized build tracking at /tmp/pip-build-tracker-0dyqv6ak
2023-09-01T11:50:51,248 Created build tracker: /tmp/pip-build-tracker-0dyqv6ak
2023-09-01T11:50:51,248 Entered build tracker: /tmp/pip-build-tracker-0dyqv6ak
2023-09-01T11:50:51,249 Created temporary directory: /tmp/pip-wheel-vnvgxrwb
2023-09-01T11:50:51,252 Created temporary directory: /tmp/pip-ephem-wheel-cache-_oe07dqk
2023-09-01T11:50:51,277 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-01T11:50:51,280 2 location(s) to search for versions of moleculekit:
2023-09-01T11:50:51,280 * https://pypi.org/simple/moleculekit/
2023-09-01T11:50:51,280 * https://www.piwheels.org/simple/moleculekit/
2023-09-01T11:50:51,281 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-09-01T11:50:51,281 Getting page https://pypi.org/simple/moleculekit/
2023-09-01T11:50:51,283 Found index url https://pypi.org/simple/
2023-09-01T11:50:51,339 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-09-01T11:50:51,375   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,375   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-09-01T11:50:51,376   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,376   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-09-01T11:50:51,376   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,376   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-09-01T11:50:51,377   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,377   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-09-01T11:50:51,377   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,377   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-09-01T11:50:51,378   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,378   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-09-01T11:50:51,378   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,378   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-09-01T11:50:51,379   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,379   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-09-01T11:50:51,379   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,379   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-09-01T11:50:51,380   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,380   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-09-01T11:50:51,380   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,380   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-09-01T11:50:51,381   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,381   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-09-01T11:50:51,381   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,381   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-09-01T11:50:51,381   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,382   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-09-01T11:50:51,382   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,382   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-09-01T11:50:51,382   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,383   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-09-01T11:50:51,383   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,383   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-09-01T11:50:51,383   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,384   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-09-01T11:50:51,384   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,384   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-09-01T11:50:51,384   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,385   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-09-01T11:50:51,385   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,385   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-09-01T11:50:51,385   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,385   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-09-01T11:50:51,386   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,386   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-09-01T11:50:51,386   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,386   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-09-01T11:50:51,387   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,387   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-09-01T11:50:51,387   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,387   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-09-01T11:50:51,388   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,388   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-09-01T11:50:51,388   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,388   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-09-01T11:50:51,389   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,389   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-09-01T11:50:51,389   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,389   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-09-01T11:50:51,389   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,390   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-09-01T11:50:51,390   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,390   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-09-01T11:50:51,390   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-09-01T11:50:51,391   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-09-01T11:50:51,395   Found link https://files.pythonhosted.org/packages/67/47/5f9440683e69c1612d117c957044f665b4e025bffab93251e31444529fa6/moleculekit-0.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.4.0
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2023-09-01T11:50:51,408   Found link https://files.pythonhosted.org/packages/5c/b2/944d529319db190e13234dd2337bff23b7a7c3c1a98b2a95eb08fc802530/moleculekit-0.9.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.7
2023-09-01T11:50:51,408   Found link https://files.pythonhosted.org/packages/42/0a/fbfa3d5c838ad716fdcb9b5ad55bddb6dccd74c5c281ac171be93b0f58e2/moleculekit-0.9.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.8
2023-09-01T11:50:51,409   Found link https://files.pythonhosted.org/packages/15/e0/93b4cc5e997a9e4e01fd39f00548f04e3f068961abba30f82fc04aa828ac/moleculekit-0.9.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.9
2023-09-01T11:50:51,409   Found link https://files.pythonhosted.org/packages/7f/58/2f04c5387c3c23e5c46f71741f7655c380b01c6f88aad7b5e945943c3fd1/moleculekit-0.9.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.12
2023-09-01T11:50:51,410   Found link https://files.pythonhosted.org/packages/b5/7c/fde4b7b8c9cd6683036e87727f341a0c9de5dae09f324dfa1bc2aa2a6de0/moleculekit-0.9.13.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.13
2023-09-01T11:50:51,410   Found link https://files.pythonhosted.org/packages/8e/f7/39a1290893da55d759e629ea6d9e2509fe6c3a06538d3f80cca590859647/moleculekit-0.9.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.14
2023-09-01T11:50:51,410   Found link https://files.pythonhosted.org/packages/02/6e/108b002ecb68c789d690492a02ced311cea625fdd642348e5cd75bd25fdb/moleculekit-0.9.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.15
2023-09-01T11:50:51,410   Found link https://files.pythonhosted.org/packages/62/51/f195a9d66dab99b8f6bd30fe5f65f63c65e65ded97c8fd20bf0cda822ee1/moleculekit-0.10.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.10.0
2023-09-01T11:50:51,411   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
2023-09-01T11:50:51,411   Found link https://files.pythonhosted.org/packages/fc/d7/f3aa2dd40f165c1b67401587414deb33e80764835dfe2abb16b9b1d167bf/moleculekit-1.0.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.1
2023-09-01T11:50:51,411   Found link https://files.pythonhosted.org/packages/19/54/5ec72761331cfeea3e48a65f0dc30f7c21ec586f6d2b904339c262abafd8/moleculekit-1.0.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.2
2023-09-01T11:50:51,411   Found link https://files.pythonhosted.org/packages/f9/12/d8febc3aa79b72ffa0ea8efb978370f58db848fba030df47ae546bccb298/moleculekit-1.0.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.3
2023-09-01T11:50:51,412   Found link https://files.pythonhosted.org/packages/07/ab/e6c8a654329cb5fc7cf2d91d47934a6f53ec8b34276e96128f9961147a6a/moleculekit-1.0.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.4
2023-09-01T11:50:51,412   Found link https://files.pythonhosted.org/packages/d3/02/1e965b08593af843878d5bc3f7cc49cf61d4c9ca3a1e07e796923fbdb65e/moleculekit-1.0.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.5
2023-09-01T11:50:51,412   Found link https://files.pythonhosted.org/packages/28/2f/61d6e171e7b0309a94b3920b2743e5b6990d24a4870a5b1caf39f0e34338/moleculekit-1.0.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.6
2023-09-01T11:50:51,412   Found link https://files.pythonhosted.org/packages/6d/1e/bbd2d882b353e673f44897179ab0b6e76df9c2a657d25d47090dbdce76d3/moleculekit-1.0.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.7
2023-09-01T11:50:51,413   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
2023-09-01T11:50:51,413   Found link https://files.pythonhosted.org/packages/72/48/3df4bcf3a3e5ca9c0e05e5486c0a7da3b7d6b3ff49830d473b6e72f02443/moleculekit-1.0.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.9
2023-09-01T11:50:51,413   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
2023-09-01T11:50:51,414   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2023-09-01T11:50:51,414   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
2023-09-01T11:50:51,414   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
2023-09-01T11:50:51,414   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
2023-09-01T11:50:51,415   Found link https://files.pythonhosted.org/packages/71/3c/15df00803c890b9d17390a31c60fa2c070a88e8a8c33c79ef10ddf023159/moleculekit-1.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.7
2023-09-01T11:50:51,415   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
2023-09-01T11:50:51,415   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-09-01T11:50:51,415   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
2023-09-01T11:50:51,416   Found link https://files.pythonhosted.org/packages/1a/07/36426e9820ea0ecff884e15fc9ebe413735a2b22a9212cdcbb9b62e56744/moleculekit-1.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.1
2023-09-01T11:50:51,416   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
2023-09-01T11:50:51,416   Found link https://files.pythonhosted.org/packages/cb/28/b8fa8b94edf207d206627fcb18753ce3fad1450d7d5e5b052daa211b226b/moleculekit-1.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.4
2023-09-01T11:50:51,416   Found link https://files.pythonhosted.org/packages/cb/c9/8d7c9c427863a8e1be9e5487520f26a4ea63a34e735a3c5598f1e8b43cb4/moleculekit-1.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.5
2023-09-01T11:50:51,417   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2023-09-01T11:50:51,417   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2023-09-01T11:50:51,417   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2023-09-01T11:50:51,417   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2023-09-01T11:50:51,418   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2023-09-01T11:50:51,418   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2023-09-01T11:50:51,418   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2023-09-01T11:50:51,418   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2023-09-01T11:50:51,419   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2023-09-01T11:50:51,419   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2023-09-01T11:50:51,419   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2023-09-01T11:50:51,420   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2023-09-01T11:50:51,420   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2023-09-01T11:50:51,420   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2023-09-01T11:50:51,420   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2023-09-01T11:50:51,421   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2023-09-01T11:50:51,421   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2023-09-01T11:50:51,422   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2023-09-01T11:50:51,422   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2023-09-01T11:50:51,423   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-09-01T11:50:51,423   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2023-09-01T11:50:51,424   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2023-09-01T11:50:51,425   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2023-09-01T11:50:51,425   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2023-09-01T11:50:51,426   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-09-01T11:50:51,426   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-09-01T11:50:51,427   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2023-09-01T11:50:51,427   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2023-09-01T11:50:51,428   Found link https://files.pythonhosted.org/packages/5e/4a/8e20ee9556cfcdc8c51aac44a054b76db1b9abf8c83124f51521397f7673/moleculekit-1.5.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.8
2023-09-01T11:50:51,428   Found link https://files.pythonhosted.org/packages/00/79/eafaf1a45594ebe0f5e3e3a775bb8e4635dd46e63a048cc577a4e3c4c29b/moleculekit-1.6.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.0
2023-09-01T11:50:51,429   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
2023-09-01T11:50:51,429   Found link https://files.pythonhosted.org/packages/01/31/1debf4b7c89e0060dc1f7d19ab348e627b9183890a8e443c1ee54ee3bd6c/moleculekit-1.6.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.4
2023-09-01T11:50:51,430   Found link https://files.pythonhosted.org/packages/d6/3a/77427acaba2c2b4670a4b94ce5cd161b60ac547e812a6337374265f3272d/moleculekit-1.6.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.5
2023-09-01T11:50:51,431   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
2023-09-01T11:50:51,431   Found link https://files.pythonhosted.org/packages/b0/eb/47f199ab494f4a3929e1265222e24dcfce4dc2dde54923d1be8e513bf765/moleculekit-1.6.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.7
2023-09-01T11:50:51,432   Found link https://files.pythonhosted.org/packages/02/62/8710bf8c331f6c5d3320bcd99ce1f53fd72c8ed39767e69fe09127926c58/moleculekit-1.6.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.8
2023-09-01T11:50:51,432   Found link https://files.pythonhosted.org/packages/bd/54/7eaec59ff225b186934cbe0ea2e709af1864cac674dc9c8f2e7cf2d8adeb/moleculekit-1.6.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.9
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2023-09-01T11:50:51,433   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-09-01T11:50:51,434   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-09-01T11:50:51,434   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-09-01T11:50:51,435   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-09-01T11:50:51,435   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-09-01T11:50:51,436   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-09-01T11:50:51,436   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-09-01T11:50:51,437   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-09-01T11:50:51,437 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-09-01T11:50:51,438 Getting page https://www.piwheels.org/simple/moleculekit/
2023-09-01T11:50:51,439 Found index url https://www.piwheels.org/simple/
2023-09-01T11:50:51,915 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-09-01T11:50:52,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.8-cp39-cp39-linux_armv6l.whl#sha256=04b80834389619f511934db60c45649252288c6a8320edfb0b3e7b2bda32ee5b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-09-01T11:50:52,011   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.6-cp39-cp39-linux_armv7l.whl#sha256=c81af8eb30e31f41a57d6e31c2e4d4a5a6f85041fe9f79dcd843adf62c919a7a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-09-01T11:50:52,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.6-cp39-cp39-linux_armv6l.whl#sha256=c81af8eb30e31f41a57d6e31c2e4d4a5a6f85041fe9f79dcd843adf62c919a7a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-09-01T11:50:52,012   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-01T11:50:52,013   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-01T11:50:52,014   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,014   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,014   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,015   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,015   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,015   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,015   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,016   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,016   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,016   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,017   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,017   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,017   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,017   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,018   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,018   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,018   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,019   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,030   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,030   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,030   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,032   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,032   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,032   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-09-01T11:50:52,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
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2023-09-01T11:50:52,055 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-09-01T11:50:52,055 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-09-01T11:50:52,094 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-09-01T11:50:52,113 Collecting moleculekit==1.7.9
2023-09-01T11:50:52,115   Created temporary directory: /tmp/pip-unpack-4ech8ebc
2023-09-01T11:50:52,582   Downloading moleculekit-1.7.9.tar.gz (6.2 MB)
2023-09-01T11:50:55,875   Added moleculekit==1.7.9 from https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz to build tracker '/tmp/pip-build-tracker-0dyqv6ak'
2023-09-01T11:50:55,883   Created temporary directory: /tmp/pip-build-env-fgmiqs9d
2023-09-01T11:50:55,893   Installing build dependencies: started
2023-09-01T11:50:55,894   Running command pip subprocess to install build dependencies
2023-09-01T11:50:57,041   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-09-01T11:50:57,410   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-01T11:51:03,655   Collecting setuptools
2023-09-01T11:51:04,338     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.1.2-py3-none-any.whl (805 kB)
2023-09-01T11:51:05,696   Collecting numpy>=1.18.5
2023-09-01T11:51:06,562     Using cached https://www.piwheels.org/simple/numpy/numpy-1.25.2-cp39-cp39-linux_armv7l.whl (12.5 MB)
2023-09-01T11:51:08,558   Collecting Cython>=0.29.21
2023-09-01T11:51:09,340     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.2-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-09-01T11:51:09,682   Collecting toml
2023-09-01T11:51:09,704     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-09-01T11:51:09,884   Collecting versioneer[toml]==0.28
2023-09-01T11:51:09,903     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-09-01T11:51:10,032   Collecting tomli (from versioneer[toml]==0.28)
2023-09-01T11:51:10,048     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-09-01T11:51:11,916   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-09-01T11:51:11,952     Creating /tmp/pip-build-env-fgmiqs9d/overlay/bin
2023-09-01T11:51:11,954     changing mode of /tmp/pip-build-env-fgmiqs9d/overlay/bin/versioneer to 755
2023-09-01T11:51:22,477     changing mode of /tmp/pip-build-env-fgmiqs9d/overlay/bin/f2py to 755
2023-09-01T11:51:22,479     changing mode of /tmp/pip-build-env-fgmiqs9d/overlay/bin/f2py3 to 755
2023-09-01T11:51:22,482     changing mode of /tmp/pip-build-env-fgmiqs9d/overlay/bin/f2py3.9 to 755
2023-09-01T11:51:25,881     changing mode of /tmp/pip-build-env-fgmiqs9d/overlay/bin/cygdb to 755
2023-09-01T11:51:25,883     changing mode of /tmp/pip-build-env-fgmiqs9d/overlay/bin/cython to 755
2023-09-01T11:51:25,885     changing mode of /tmp/pip-build-env-fgmiqs9d/overlay/bin/cythonize to 755
2023-09-01T11:51:25,912   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-09-01T11:51:25,912   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.25.2 which is incompatible.
2023-09-01T11:51:25,913   Successfully installed Cython-3.0.2 numpy-1.25.2 setuptools-68.1.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28

2023-09-01T11:51:25,926   [notice] A new release of pip is available: 23.1.2 -> 23.2.1
2023-09-01T11:51:25,926   [notice] To update, run: python3 -m pip install --upgrade pip
2023-09-01T11:51:26,316   Installing build dependencies: finished with status 'done'
2023-09-01T11:51:26,321   Getting requirements to build wheel: started
2023-09-01T11:51:26,322   Running command Getting requirements to build wheel
2023-09-01T11:52:04,559   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,560   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,560   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,561   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,561   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,561   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,561   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,561   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,561   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,561   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-09-01T11:52:04,562   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-09-01T11:52:04,562   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-09-01T11:52:04,562   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-09-01T11:52:04,562   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-09-01T11:52:04,562   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-09-01T11:52:04,562   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-09-01T11:52:04,562   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-09-01T11:52:04,563   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-09-01T11:52:04,563   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-09-01T11:52:04,563   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
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2023-09-01T11:52:04,843   running egg_info
2023-09-01T11:52:04,849   writing moleculekit.egg-info/PKG-INFO
2023-09-01T11:52:04,851   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-09-01T11:52:04,853   writing requirements to moleculekit.egg-info/requires.txt
2023-09-01T11:52:04,854   writing top-level names to moleculekit.egg-info/top_level.txt
2023-09-01T11:52:04,877   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,877   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,878   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,878   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,878   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,878   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,878   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,878   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,879   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,879   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,879   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,879   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,879   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,879   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,879   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,879   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-01T11:52:04,880   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,880   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-09-01T11:52:04,880   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-01T11:52:04,881   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-01T11:52:04,881   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-01T11:52:04,882   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,882   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,882   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-01T11:52:04,883   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,883   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,883   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,883   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,883   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,883   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,883   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,884   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,884   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,884   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,884   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,884   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,884   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,884   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,884   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,885   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:04,892   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-09-01T11:52:04,923   reading manifest template 'MANIFEST.in'
2023-09-01T11:52:05,136   no previously-included directories found matching 'moleculekit/test-data'
2023-09-01T11:52:05,137   no previously-included directories found matching 'moleculekit/tests'
2023-09-01T11:52:05,138   no previously-included directories found matching 'package'
2023-09-01T11:52:05,138   adding license file 'LICENSE'
2023-09-01T11:52:05,154   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-09-01T11:52:06,113   Getting requirements to build wheel: finished with status 'done'
2023-09-01T11:52:06,128   Installing backend dependencies: started
2023-09-01T11:52:06,129   Running command pip subprocess to install backend dependencies
2023-09-01T11:52:07,360   Using pip 23.1.2 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-09-01T11:52:07,749   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-01T11:52:08,230   Collecting wheel
2023-09-01T11:52:08,248     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-01T11:52:09,729   Installing collected packages: wheel
2023-09-01T11:52:09,952     Creating /tmp/pip-build-env-fgmiqs9d/normal/bin
2023-09-01T11:52:09,954     changing mode of /tmp/pip-build-env-fgmiqs9d/normal/bin/wheel to 755
2023-09-01T11:52:09,967   Successfully installed wheel-0.41.2

2023-09-01T11:52:09,980   [notice] A new release of pip is available: 23.1.2 -> 23.2.1
2023-09-01T11:52:09,980   [notice] To update, run: python3 -m pip install --upgrade pip
2023-09-01T11:52:10,190   Installing backend dependencies: finished with status 'done'
2023-09-01T11:52:10,192   Created temporary directory: /tmp/pip-modern-metadata-hf2c2bet
2023-09-01T11:52:10,195   Preparing metadata (pyproject.toml): started
2023-09-01T11:52:10,196   Running command Preparing metadata (pyproject.toml)
2023-09-01T11:52:12,544   running dist_info
2023-09-01T11:52:12,545   creating /tmp/pip-modern-metadata-hf2c2bet/moleculekit.egg-info
2023-09-01T11:52:12,551   writing /tmp/pip-modern-metadata-hf2c2bet/moleculekit.egg-info/PKG-INFO
2023-09-01T11:52:12,554   writing dependency_links to /tmp/pip-modern-metadata-hf2c2bet/moleculekit.egg-info/dependency_links.txt
2023-09-01T11:52:12,556   writing requirements to /tmp/pip-modern-metadata-hf2c2bet/moleculekit.egg-info/requires.txt
2023-09-01T11:52:12,557   writing top-level names to /tmp/pip-modern-metadata-hf2c2bet/moleculekit.egg-info/top_level.txt
2023-09-01T11:52:12,558   writing manifest file '/tmp/pip-modern-metadata-hf2c2bet/moleculekit.egg-info/SOURCES.txt'
2023-09-01T11:52:12,583   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-09-01T11:52:12,588   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,588   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,588   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,588   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,588   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,588   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,589   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,589   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,589   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,589   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,589   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,589   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,589   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,589   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,590   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,590   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,590   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,590   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,590   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,590   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,590   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,591   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:12,597   reading manifest file '/tmp/pip-modern-metadata-hf2c2bet/moleculekit.egg-info/SOURCES.txt'
2023-09-01T11:52:12,599   reading manifest template 'MANIFEST.in'
2023-09-01T11:52:12,839   no previously-included directories found matching 'moleculekit/test-data'
2023-09-01T11:52:12,840   no previously-included directories found matching 'moleculekit/tests'
2023-09-01T11:52:12,841   no previously-included directories found matching 'package'
2023-09-01T11:52:12,841   adding license file 'LICENSE'
2023-09-01T11:52:12,853   writing manifest file '/tmp/pip-modern-metadata-hf2c2bet/moleculekit.egg-info/SOURCES.txt'
2023-09-01T11:52:12,862   creating '/tmp/pip-modern-metadata-hf2c2bet/moleculekit-1.7.9.dist-info'
2023-09-01T11:52:13,061   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-01T11:52:13,067   Source in /tmp/pip-wheel-vnvgxrwb/moleculekit_ae643bc58ea543baabc7fa47e79479aa has version 1.7.9, which satisfies requirement moleculekit==1.7.9 from https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz
2023-09-01T11:52:13,068   Removed moleculekit==1.7.9 from https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz from build tracker '/tmp/pip-build-tracker-0dyqv6ak'
2023-09-01T11:52:13,074 Created temporary directory: /tmp/pip-unpack-902l00xc
2023-09-01T11:52:13,075 Building wheels for collected packages: moleculekit
2023-09-01T11:52:13,079   Created temporary directory: /tmp/pip-wheel-j0fo37m2
2023-09-01T11:52:13,079   Destination directory: /tmp/pip-wheel-j0fo37m2
2023-09-01T11:52:13,081   Building wheel for moleculekit (pyproject.toml): started
2023-09-01T11:52:13,082   Running command Building wheel for moleculekit (pyproject.toml)
2023-09-01T11:52:15,276   running bdist_wheel
2023-09-01T11:52:15,292   running build
2023-09-01T11:52:15,293   running build_py
2023-09-01T11:52:15,300   creating build
2023-09-01T11:52:15,301   creating build/lib.linux-armv7l-cpython-39
2023-09-01T11:52:15,301   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,302   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,304   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,306   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,307   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,311   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,313   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,315   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,317   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,319   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,321   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,322   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,325   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,327   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,329   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,331   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,332   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,334   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,335   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,337   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,339   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,343   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,347   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-09-01T11:52:15,348   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-09-01T11:52:15,350   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-09-01T11:52:15,353   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,354   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,356   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,358   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,360   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,362   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,364   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,366   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,368   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,370   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,372   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,374   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,376   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,378   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,381   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,383   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-09-01T11:52:15,386   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-09-01T11:52:15,387   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-09-01T11:52:15,389   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-09-01T11:52:15,391   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-09-01T11:52:15,393   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-09-01T11:52:15,395   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-09-01T11:52:15,397   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-09-01T11:52:15,400   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-09-01T11:52:15,401   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-09-01T11:52:15,403   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,404   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,406   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,409   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,411   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,413   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,415   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,417   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,419   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,421   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,423   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,425   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,427   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,430   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-09-01T11:52:15,433   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-09-01T11:52:15,433   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-09-01T11:52:15,435   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-09-01T11:52:15,437   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-09-01T11:52:15,439   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-09-01T11:52:15,441   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-09-01T11:52:15,442   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-09-01T11:52:15,444   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-09-01T11:52:15,447   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-09-01T11:52:15,451   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-09-01T11:52:15,452   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-09-01T11:52:15,454   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-09-01T11:52:15,456   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-09-01T11:52:15,458   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-09-01T11:52:15,460   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-09-01T11:52:15,461   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-09-01T11:52:15,463   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-09-01T11:52:15,465   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-09-01T11:52:15,467   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-09-01T11:52:15,469   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-09-01T11:52:15,470   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-09-01T11:52:15,472   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-09-01T11:52:15,474   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-09-01T11:52:15,474   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-09-01T11:52:15,477   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-09-01T11:52:15,479   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-09-01T11:52:15,481   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-09-01T11:52:15,484   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-09-01T11:52:15,484   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-09-01T11:52:15,486   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-09-01T11:52:15,488   running egg_info
2023-09-01T11:52:15,493   writing moleculekit.egg-info/PKG-INFO
2023-09-01T11:52:15,495   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-09-01T11:52:15,496   writing requirements to moleculekit.egg-info/requires.txt
2023-09-01T11:52:15,497   writing top-level names to moleculekit.egg-info/top_level.txt
2023-09-01T11:52:15,510   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,510   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,510   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,511   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,511   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,511   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,511   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,511   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,511   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,511   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,512   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,512   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,512   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,512   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,512   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,512   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,512   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,512   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,513   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,513   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,513   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,513   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,513   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,513   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,513   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,514   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,514   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,514   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,514   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,514   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,514   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,514   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,514   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,515   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,515   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,515   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,515   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,515   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,515   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,515   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,515   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,516   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,516   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,516   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,516   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,516   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,516   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,516   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,516   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,517   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,517   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,517   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,517   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,517   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,517   dependency /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-09-01T11:52:15,523   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-09-01T11:52:15,532   reading manifest template 'MANIFEST.in'
2023-09-01T11:52:15,739   no previously-included directories found matching 'moleculekit/test-data'
2023-09-01T11:52:15,740   no previously-included directories found matching 'moleculekit/tests'
2023-09-01T11:52:15,741   no previously-included directories found matching 'package'
2023-09-01T11:52:15,742   adding license file 'LICENSE'
2023-09-01T11:52:15,758   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-09-01T11:52:15,768   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-09-01T11:52:15,768   !!

2023-09-01T11:52:15,768           ********************************************************************************
2023-09-01T11:52:15,769           ############################
2023-09-01T11:52:15,769           # Package would be ignored #
2023-09-01T11:52:15,769           ############################
2023-09-01T11:52:15,769           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-09-01T11:52:15,769           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,769           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,769           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-09-01T11:52:15,770           to the `packages` configuration field.

2023-09-01T11:52:15,770           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,770           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,770           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,770           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,771           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,771           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-09-01T11:52:15,771           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-09-01T11:52:15,771           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,771           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,771           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,771           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,772           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,772           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,772                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,772                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,772                 directory, all directories are treated like packages.
2023-09-01T11:52:15,773           ********************************************************************************

2023-09-01T11:52:15,773   !!
2023-09-01T11:52:15,773     check.warn(importable)
2023-09-01T11:52:15,773   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-09-01T11:52:15,773   !!

2023-09-01T11:52:15,773           ********************************************************************************
2023-09-01T11:52:15,774           ############################
2023-09-01T11:52:15,774           # Package would be ignored #
2023-09-01T11:52:15,774           ############################
2023-09-01T11:52:15,774           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-09-01T11:52:15,774           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,774           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,774           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-09-01T11:52:15,774           to the `packages` configuration field.

2023-09-01T11:52:15,775           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,775           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,775           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,775           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,775           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,776           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-09-01T11:52:15,776           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-09-01T11:52:15,776           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,776           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,776           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,776           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,777           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,777           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,777                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,777                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,777                 directory, all directories are treated like packages.
2023-09-01T11:52:15,777           ********************************************************************************

2023-09-01T11:52:15,778   !!
2023-09-01T11:52:15,778     check.warn(importable)
2023-09-01T11:52:15,778   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-09-01T11:52:15,778   !!

2023-09-01T11:52:15,778           ********************************************************************************
2023-09-01T11:52:15,778           ############################
2023-09-01T11:52:15,778           # Package would be ignored #
2023-09-01T11:52:15,779           ############################
2023-09-01T11:52:15,779           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-09-01T11:52:15,779           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,779           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,779           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-09-01T11:52:15,779           to the `packages` configuration field.

2023-09-01T11:52:15,779           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,780           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,780           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,780           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,780           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,780           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-09-01T11:52:15,780           already explicitly excluding 'moleculekit.distance_utils' via
2023-09-01T11:52:15,781           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,781           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,781           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,781           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,781           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,782           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,782                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,782                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,782                 directory, all directories are treated like packages.
2023-09-01T11:52:15,782           ********************************************************************************

2023-09-01T11:52:15,782   !!
2023-09-01T11:52:15,782     check.warn(importable)
2023-09-01T11:52:15,782   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-09-01T11:52:15,783   !!

2023-09-01T11:52:15,783           ********************************************************************************
2023-09-01T11:52:15,783           ############################
2023-09-01T11:52:15,783           # Package would be ignored #
2023-09-01T11:52:15,783           ############################
2023-09-01T11:52:15,783           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-09-01T11:52:15,783           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,784           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,784           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-09-01T11:52:15,784           to the `packages` configuration field.

2023-09-01T11:52:15,784           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,784           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,784           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,784           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,785           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,785           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-09-01T11:52:15,785           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-09-01T11:52:15,785           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,785           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,785           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,786           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,786           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,786           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,786                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,786                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,786                 directory, all directories are treated like packages.
2023-09-01T11:52:15,787           ********************************************************************************

2023-09-01T11:52:15,787   !!
2023-09-01T11:52:15,787     check.warn(importable)
2023-09-01T11:52:15,787   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-09-01T11:52:15,787   !!

2023-09-01T11:52:15,787           ********************************************************************************
2023-09-01T11:52:15,787           ############################
2023-09-01T11:52:15,788           # Package would be ignored #
2023-09-01T11:52:15,788           ############################
2023-09-01T11:52:15,788           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-09-01T11:52:15,788           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,788           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,788           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-09-01T11:52:15,789           to the `packages` configuration field.

2023-09-01T11:52:15,789           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,789           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,789           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,789           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,789           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,790           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-09-01T11:52:15,790           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-09-01T11:52:15,790           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,790           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,790           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,790           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,791           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,791           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,791                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,791                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,791                 directory, all directories are treated like packages.
2023-09-01T11:52:15,792           ********************************************************************************

2023-09-01T11:52:15,792   !!
2023-09-01T11:52:15,792     check.warn(importable)
2023-09-01T11:52:15,792   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-09-01T11:52:15,792   !!

2023-09-01T11:52:15,792           ********************************************************************************
2023-09-01T11:52:15,792           ############################
2023-09-01T11:52:15,793           # Package would be ignored #
2023-09-01T11:52:15,793           ############################
2023-09-01T11:52:15,793           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-09-01T11:52:15,793           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,793           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,793           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-09-01T11:52:15,793           to the `packages` configuration field.

2023-09-01T11:52:15,794           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,794           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,794           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,794           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,794           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,795           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-09-01T11:52:15,795           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-09-01T11:52:15,795           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,795           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,795           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,795           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,795           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,796           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,796                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,796                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,796                 directory, all directories are treated like packages.
2023-09-01T11:52:15,796           ********************************************************************************

2023-09-01T11:52:15,796   !!
2023-09-01T11:52:15,797     check.warn(importable)
2023-09-01T11:52:15,797   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-09-01T11:52:15,797   !!

2023-09-01T11:52:15,797           ********************************************************************************
2023-09-01T11:52:15,797           ############################
2023-09-01T11:52:15,797           # Package would be ignored #
2023-09-01T11:52:15,797           ############################
2023-09-01T11:52:15,797           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-09-01T11:52:15,798           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,798           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,798           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-09-01T11:52:15,798           to the `packages` configuration field.

2023-09-01T11:52:15,798           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,798           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,798           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,799           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,799           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,799           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-09-01T11:52:15,799           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-09-01T11:52:15,799           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,799           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,800           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,800           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,800           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,800           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,800                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,801                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,801                 directory, all directories are treated like packages.
2023-09-01T11:52:15,801           ********************************************************************************

2023-09-01T11:52:15,801   !!
2023-09-01T11:52:15,801     check.warn(importable)
2023-09-01T11:52:15,801   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-09-01T11:52:15,801   !!

2023-09-01T11:52:15,802           ********************************************************************************
2023-09-01T11:52:15,802           ############################
2023-09-01T11:52:15,802           # Package would be ignored #
2023-09-01T11:52:15,802           ############################
2023-09-01T11:52:15,802           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-09-01T11:52:15,802           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,802           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,802           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-09-01T11:52:15,803           to the `packages` configuration field.

2023-09-01T11:52:15,803           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,803           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,803           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,803           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,803           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,804           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-09-01T11:52:15,804           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-09-01T11:52:15,804           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,804           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,804           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,804           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,804           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,805           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,805                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,805                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,805                 directory, all directories are treated like packages.
2023-09-01T11:52:15,805           ********************************************************************************

2023-09-01T11:52:15,805   !!
2023-09-01T11:52:15,806     check.warn(importable)
2023-09-01T11:52:15,806   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-09-01T11:52:15,806   !!

2023-09-01T11:52:15,806           ********************************************************************************
2023-09-01T11:52:15,806           ############################
2023-09-01T11:52:15,806           # Package would be ignored #
2023-09-01T11:52:15,806           ############################
2023-09-01T11:52:15,806           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-09-01T11:52:15,807           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,807           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,807           package, please make sure that 'moleculekit.share' is explicitly added
2023-09-01T11:52:15,807           to the `packages` configuration field.

2023-09-01T11:52:15,807           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,807           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,808           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,808           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,808           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,808           If you don't want 'moleculekit.share' to be distributed and are
2023-09-01T11:52:15,808           already explicitly excluding 'moleculekit.share' via
2023-09-01T11:52:15,809           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,809           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,809           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,809           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,810           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,810           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,810                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,811                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,811                 directory, all directories are treated like packages.
2023-09-01T11:52:15,811           ********************************************************************************

2023-09-01T11:52:15,811   !!
2023-09-01T11:52:15,811     check.warn(importable)
2023-09-01T11:52:15,812   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-09-01T11:52:15,812   !!

2023-09-01T11:52:15,812           ********************************************************************************
2023-09-01T11:52:15,812           ############################
2023-09-01T11:52:15,812           # Package would be ignored #
2023-09-01T11:52:15,813           ############################
2023-09-01T11:52:15,813           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-09-01T11:52:15,813           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,813           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,813           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-09-01T11:52:15,813           to the `packages` configuration field.

2023-09-01T11:52:15,814           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,814           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,814           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,814           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,815           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,815           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-09-01T11:52:15,815           already explicitly excluding 'moleculekit.share.atomselect' via
2023-09-01T11:52:15,815           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,815           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,816           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,816           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,816           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,816           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,817                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,817                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,817                 directory, all directories are treated like packages.
2023-09-01T11:52:15,817           ********************************************************************************

2023-09-01T11:52:15,817   !!
2023-09-01T11:52:15,817     check.warn(importable)
2023-09-01T11:52:15,817   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-09-01T11:52:15,817   !!

2023-09-01T11:52:15,818           ********************************************************************************
2023-09-01T11:52:15,818           ############################
2023-09-01T11:52:15,818           # Package would be ignored #
2023-09-01T11:52:15,818           ############################
2023-09-01T11:52:15,818           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-09-01T11:52:15,818           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,819           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,819           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-09-01T11:52:15,819           to the `packages` configuration field.

2023-09-01T11:52:15,819           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,819           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,819           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,820           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,820           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,820           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-09-01T11:52:15,820           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-09-01T11:52:15,820           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,820           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,821           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,821           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,822           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,823           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,824                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,824                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,825                 directory, all directories are treated like packages.
2023-09-01T11:52:15,825           ********************************************************************************

2023-09-01T11:52:15,826   !!
2023-09-01T11:52:15,827     check.warn(importable)
2023-09-01T11:52:15,827   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-09-01T11:52:15,827   !!

2023-09-01T11:52:15,828           ********************************************************************************
2023-09-01T11:52:15,829           ############################
2023-09-01T11:52:15,832           # Package would be ignored #
2023-09-01T11:52:15,834           ############################
2023-09-01T11:52:15,835           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-09-01T11:52:15,835           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,836           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,836           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-09-01T11:52:15,836           to the `packages` configuration field.

2023-09-01T11:52:15,836           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,836           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,836           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,837           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,837           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,837           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-09-01T11:52:15,837           already explicitly excluding 'moleculekit.tmalign' via
2023-09-01T11:52:15,838           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,838           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,838           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,838           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,838           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,839           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,839                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,839                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,839                 directory, all directories are treated like packages.
2023-09-01T11:52:15,840           ********************************************************************************

2023-09-01T11:52:15,840   !!
2023-09-01T11:52:15,840     check.warn(importable)
2023-09-01T11:52:15,840   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-09-01T11:52:15,841   !!

2023-09-01T11:52:15,841           ********************************************************************************
2023-09-01T11:52:15,841           ############################
2023-09-01T11:52:15,841           # Package would be ignored #
2023-09-01T11:52:15,841           ############################
2023-09-01T11:52:15,842           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-09-01T11:52:15,842           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,842           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,842           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-09-01T11:52:15,842           to the `packages` configuration field.

2023-09-01T11:52:15,843           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,843           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,843           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,843           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,844           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,844           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-09-01T11:52:15,844           already explicitly excluding 'moleculekit.tmalign.include' via
2023-09-01T11:52:15,844           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,844           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,844           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,845           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,845           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,845           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,845                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,845                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,846                 directory, all directories are treated like packages.
2023-09-01T11:52:15,846           ********************************************************************************

2023-09-01T11:52:15,846   !!
2023-09-01T11:52:15,846     check.warn(importable)
2023-09-01T11:52:15,846   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-09-01T11:52:15,846   !!

2023-09-01T11:52:15,847           ********************************************************************************
2023-09-01T11:52:15,847           ############################
2023-09-01T11:52:15,847           # Package would be ignored #
2023-09-01T11:52:15,847           ############################
2023-09-01T11:52:15,847           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-09-01T11:52:15,847           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,847           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,847           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-09-01T11:52:15,848           to the `packages` configuration field.

2023-09-01T11:52:15,848           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,848           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,848           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,849           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,850           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,850           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-09-01T11:52:15,850           already explicitly excluding 'moleculekit.tmalign.src' via
2023-09-01T11:52:15,851           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,851           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,851           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,852           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,852           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,853           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,853                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,854                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,854                 directory, all directories are treated like packages.
2023-09-01T11:52:15,854           ********************************************************************************

2023-09-01T11:52:15,855   !!
2023-09-01T11:52:15,855     check.warn(importable)
2023-09-01T11:52:15,855   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-09-01T11:52:15,856   !!

2023-09-01T11:52:15,856           ********************************************************************************
2023-09-01T11:52:15,857           ############################
2023-09-01T11:52:15,857           # Package would be ignored #
2023-09-01T11:52:15,857           ############################
2023-09-01T11:52:15,857           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-09-01T11:52:15,858           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,858           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,859           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-09-01T11:52:15,859           to the `packages` configuration field.

2023-09-01T11:52:15,860           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,860           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,860           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,861           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,861           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,862           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-09-01T11:52:15,862           already explicitly excluding 'moleculekit.wrapping' via
2023-09-01T11:52:15,862           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,863           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,863           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,863           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,864           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,865           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,865                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,865                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,866                 directory, all directories are treated like packages.
2023-09-01T11:52:15,866           ********************************************************************************

2023-09-01T11:52:15,866   !!
2023-09-01T11:52:15,867     check.warn(importable)
2023-09-01T11:52:15,867   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-09-01T11:52:15,867   !!

2023-09-01T11:52:15,868           ********************************************************************************
2023-09-01T11:52:15,868           ############################
2023-09-01T11:52:15,869           # Package would be ignored #
2023-09-01T11:52:15,869           ############################
2023-09-01T11:52:15,869           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-09-01T11:52:15,870           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,870           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,870           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-09-01T11:52:15,871           to the `packages` configuration field.

2023-09-01T11:52:15,871           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,871           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,871           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,871           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,872           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,872           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-09-01T11:52:15,872           already explicitly excluding 'moleculekit.xtc_utils' via
2023-09-01T11:52:15,872           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,872           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,873           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,873           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,873           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,874           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,874                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,874                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,874                 directory, all directories are treated like packages.
2023-09-01T11:52:15,874           ********************************************************************************

2023-09-01T11:52:15,875   !!
2023-09-01T11:52:15,875     check.warn(importable)
2023-09-01T11:52:15,875   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-09-01T11:52:15,875   !!

2023-09-01T11:52:15,875           ********************************************************************************
2023-09-01T11:52:15,876           ############################
2023-09-01T11:52:15,876           # Package would be ignored #
2023-09-01T11:52:15,876           ############################
2023-09-01T11:52:15,876           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-09-01T11:52:15,876           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,877           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,877           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-09-01T11:52:15,877           to the `packages` configuration field.

2023-09-01T11:52:15,877           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,877           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,877           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,878           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,878           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,878           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-09-01T11:52:15,878           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-09-01T11:52:15,878           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,879           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,879           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,879           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,879           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,879           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,880                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,880                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,880                 directory, all directories are treated like packages.
2023-09-01T11:52:15,880           ********************************************************************************

2023-09-01T11:52:15,880   !!
2023-09-01T11:52:15,880     check.warn(importable)
2023-09-01T11:52:15,880   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-09-01T11:52:15,881   !!

2023-09-01T11:52:15,881           ********************************************************************************
2023-09-01T11:52:15,881           ############################
2023-09-01T11:52:15,881           # Package would be ignored #
2023-09-01T11:52:15,881           ############################
2023-09-01T11:52:15,881           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-09-01T11:52:15,881           but it is absent from setuptools' `packages` configuration.

2023-09-01T11:52:15,882           This leads to an ambiguous overall configuration. If you want to distribute this
2023-09-01T11:52:15,882           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-09-01T11:52:15,882           to the `packages` configuration field.

2023-09-01T11:52:15,883           Alternatively, you can also rely on setuptools' discovery methods
2023-09-01T11:52:15,884           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-09-01T11:52:15,884           instead of `find_packages(...)`/`find:`).

2023-09-01T11:52:15,886           You can read more about "package discovery" on setuptools documentation page:

2023-09-01T11:52:15,886           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-09-01T11:52:15,887           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-09-01T11:52:15,887           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-09-01T11:52:15,887           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-09-01T11:52:15,888           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-09-01T11:52:15,888           combination with a more fine grained `package-data` configuration.

2023-09-01T11:52:15,889           You can read more about "package data files" on setuptools documentation page:

2023-09-01T11:52:15,889           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-09-01T11:52:15,890           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-09-01T11:52:15,890                 even if it does not contain any `.py` files.
2023-09-01T11:52:15,891                 On the other hand, currently there is no concept of package data
2023-09-01T11:52:15,891                 directory, all directories are treated like packages.
2023-09-01T11:52:15,891           ********************************************************************************

2023-09-01T11:52:15,892   !!
2023-09-01T11:52:15,892     check.warn(importable)
2023-09-01T11:52:15,892   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,893   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:15,893   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-09-01T11:52:15,893   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-09-01T11:52:15,893   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-09-01T11:52:15,894   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-09-01T11:52:15,894   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-09-01T11:52:15,894   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-09-01T11:52:15,895   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-09-01T11:52:15,895   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-09-01T11:52:15,906   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-09-01T11:52:15,908   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-09-01T11:52:15,909   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-09-01T11:52:15,934   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-09-01T11:52:15,935   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-09-01T11:52:15,936   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-09-01T11:52:15,939   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-09-01T11:52:15,941   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-09-01T11:52:16,139   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-09-01T11:52:16,140   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-09-01T11:52:16,142   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-09-01T11:52:16,143   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,144   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,145   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,147   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,149   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,151   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,153   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,154   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,156   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,158   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,160   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,162   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,164   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,166   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,168   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,170   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,171   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,173   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,176   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,177   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,179   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,181   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,183   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,185   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,187   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,189   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,191   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,193   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,196   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,198   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,200   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,202   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,204   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,206   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,208   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,210   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,212   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,214   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,216   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,218   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,220   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,222   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,224   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,226   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,228   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,230   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,232   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,234   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,236   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,238   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,240   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,242   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,244   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,245   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,247   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,249   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,251   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,253   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,255   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,257   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,258   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,260   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,262   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,264   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,266   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,268   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,270   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,272   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,274   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,276   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,278   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,280   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,282   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,284   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,286   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,288   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,290   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,292   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,294   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,296   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,298   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,300   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,302   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,304   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,306   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,308   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,310   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,312   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,314   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,315   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,317   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,319   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,321   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,323   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,325   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,327   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,329   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,330   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,332   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,334   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,336   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,338   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,340   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,342   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,344   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,346   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,348   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,350   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,352   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,353   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,355   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,357   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,359   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,361   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,363   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,365   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,367   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,369   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,370   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,372   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,374   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,376   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,378   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,380   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,382   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,384   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,386   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,388   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,390   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,392   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,394   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,396   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,398   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,400   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,402   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,404   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,406   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,407   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,409   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,411   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,413   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,415   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,417   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,419   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,421   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,423   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,425   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,426   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,428   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,430   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,433   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,434   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,436   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,438   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,440   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,442   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,445   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,447   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,449   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,451   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,453   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,455   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,457   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,459   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,461   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,463   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,465   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,467   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,469   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,471   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,473   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,474   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,476   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,478   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,480   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,482   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-09-01T11:52:16,484   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-09-01T11:52:16,485   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-09-01T11:52:16,514   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-09-01T11:52:16,516   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-09-01T11:52:16,518   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-09-01T11:52:16,518   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-09-01T11:52:16,521   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-09-01T11:52:16,521   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-09-01T11:52:16,528   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-09-01T11:52:16,529   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-09-01T11:52:16,549   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-09-01T11:52:16,551   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-09-01T11:52:16,551   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-09-01T11:52:16,572   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-09-01T11:52:16,574   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-09-01T11:52:16,576   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-09-01T11:52:16,577   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-09-01T11:52:16,580   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-09-01T11:52:16,582   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-09-01T11:52:16,584   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-09-01T11:52:16,584   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-09-01T11:52:16,588   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-09-01T11:52:16,590   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-09-01T11:52:16,593   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-09-01T11:52:16,593   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-09-01T11:52:16,621   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-09-01T11:52:16,623   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-09-01T11:52:16,624   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-09-01T11:52:16,652   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-09-01T11:52:16,655   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-09-01T11:52:16,656   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-09-01T11:52:16,676   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-09-01T11:52:16,678   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-09-01T11:52:16,679   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-09-01T11:52:16,698   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-09-01T11:52:16,709   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-09-01T11:52:16,710   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.9'
2023-09-01T11:52:16,710   running build_ext
2023-09-01T11:52:16,721   building 'moleculekit.interactions.hbonds' extension
2023-09-01T11:52:16,721   creating build/temp.linux-armv7l-cpython-39
2023-09-01T11:52:16,722   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-09-01T11:52:16,723   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-09-01T11:52:16,724   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-09-01T11:52:16,725   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-09-01T11:52:16,989   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:52:16,989                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:52:16,989                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:52:16,989                    from moleculekit/interactions/hbonds/hbonds.cpp:1192:
2023-09-01T11:52:16,989   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:52:16,989      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:52:16,989         |  ^~~~~~~
2023-09-01T11:52:42,924   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:52:43,237   building 'moleculekit.interactions.pipi' extension
2023-09-01T11:52:43,237   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-09-01T11:52:43,238   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-09-01T11:52:43,464   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:52:43,464                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:52:43,464                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:52:43,465                    from moleculekit/interactions/pipi/pipi.cpp:1192:
2023-09-01T11:52:43,465   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:52:43,465      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:52:43,465         |  ^~~~~~~
2023-09-01T11:53:11,381   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:53:11,696   building 'moleculekit.interactions.cationpi' extension
2023-09-01T11:53:11,697   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-09-01T11:53:11,698   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-09-01T11:53:11,948   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:53:11,948                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:53:11,948                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:53:11,948                    from moleculekit/interactions/cationpi/cationpi.cpp:1192:
2023-09-01T11:53:11,949   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:53:11,949      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:53:11,949         |  ^~~~~~~
2023-09-01T11:53:39,629   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:53:39,949   building 'moleculekit.interactions.sigmahole' extension
2023-09-01T11:53:39,950   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-09-01T11:53:39,951   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-09-01T11:53:40,182   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:53:40,182                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:53:40,182                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:53:40,183                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1192:
2023-09-01T11:53:40,183   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:53:40,183      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:53:40,183         |  ^~~~~~~
2023-09-01T11:54:07,360   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:54:07,678   building 'moleculekit.wrapping' extension
2023-09-01T11:54:07,679   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-09-01T11:54:07,680   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-09-01T11:54:07,910   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:54:07,910                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:54:07,910                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:54:07,910                    from moleculekit/wrapping/wrapping.cpp:1192:
2023-09-01T11:54:07,910   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:54:07,910      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:54:07,910         |  ^~~~~~~
2023-09-01T11:54:31,803   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:54:32,012   building 'moleculekit.bondguesser_utils' extension
2023-09-01T11:54:32,013   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-09-01T11:54:32,014   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-09-01T11:54:32,242   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:54:32,243                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:54:32,243                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:54:32,243                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1192:
2023-09-01T11:54:32,243   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:54:32,243      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:54:32,243         |  ^~~~~~~
2023-09-01T11:54:33,792   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-09-01T11:54:33,793   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19831:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-09-01T11:54:33,793   19831 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-09-01T11:54:33,793         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-09-01T11:54:33,794   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19843:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-09-01T11:54:33,794   19843 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-09-01T11:54:33,794         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-09-01T11:54:33,795   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19855:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-09-01T11:54:33,795   19855 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-09-01T11:54:33,795         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-09-01T11:54:33,795   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19894:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,796   19894 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-01T11:54:33,796         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,797   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19933:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,797   19933 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-01T11:54:33,797         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,798   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19972:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,798   19972 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,798         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,799   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20011:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,799   20011 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-01T11:54:33,799         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,799   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20017:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,800   20017 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-01T11:54:33,800         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,800   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20058:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,801   20058 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-01T11:54:33,801         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,801   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20064:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,801   20064 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,802         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,802   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20105:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,803   20105 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-01T11:54:33,803         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,803   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20111:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,803   20111 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,804         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,804   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20152:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,805   20152 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-01T11:54:33,805         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,805   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20205:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,806   20205 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,806         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,807   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20252:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,807   20252 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,807         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,808   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20293:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,808   20293 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-01T11:54:33,808         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,808   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20299:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,809   20299 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-01T11:54:33,809         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,809   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20305:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,809   20305 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,809         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,809   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20352:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,810   20352 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-09-01T11:54:33,810         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,810   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20358:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,810   20358 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,810         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,810   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20399:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,811   20399 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-09-01T11:54:33,811         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,811   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20411:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,811   20411 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,811         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,811   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20464:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-09-01T11:54:33,811   20464 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-09-01T11:54:33,812         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,831   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-09-01T11:54:33,831   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21089:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-01T11:54:33,831   21089 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-09-01T11:54:33,831         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-01T11:54:33,831   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21126:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-01T11:54:33,832   21126 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-09-01T11:54:33,832         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-01T11:54:56,764   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:54:57,060   building 'moleculekit.atomselect_utils' extension
2023-09-01T11:54:57,061   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-09-01T11:54:57,062   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-09-01T11:54:57,298   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:54:57,298                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:54:57,298                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:54:57,299                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1209:
2023-09-01T11:54:57,299   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:54:57,299      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:54:57,299         |  ^~~~~~~
2023-09-01T11:54:59,026   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-09-01T11:54:59,026   moleculekit/atomselect_utils/atomselect_utils.cpp:23820:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-01T11:54:59,027   23820 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-09-01T11:54:59,027         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-01T11:54:59,031   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-09-01T11:54:59,032   moleculekit/atomselect_utils/atomselect_utils.cpp:24075:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-01T11:54:59,032   24075 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-09-01T11:54:59,032         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-01T11:54:59,037   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-09-01T11:54:59,037   moleculekit/atomselect_utils/atomselect_utils.cpp:24345:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-09-01T11:54:59,037   24345 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-09-01T11:54:59,037         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-01T11:55:29,484   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:55:29,814   building 'moleculekit.distance_utils' extension
2023-09-01T11:55:29,815   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-09-01T11:55:29,815   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-09-01T11:55:30,045   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:55:30,045                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:55:30,045                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:55:30,046                    from moleculekit/distance_utils/distance_utils.cpp:1192:
2023-09-01T11:55:30,046   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:55:30,046      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:55:30,046         |  ^~~~~~~
2023-09-01T11:56:02,372   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:56:02,728   building 'moleculekit.occupancy_utils' extension
2023-09-01T11:56:02,729   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-09-01T11:56:02,730   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-09-01T11:56:02,963   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:56:02,964                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:56:02,964                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:56:02,964                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1192:
2023-09-01T11:56:02,964   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:56:02,964      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:56:02,964         |  ^~~~~~~
2023-09-01T11:56:25,880   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:56:26,088   building 'moleculekit.xtc' extension
2023-09-01T11:56:26,089   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-09-01T11:56:26,089   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-09-01T11:56:26,091   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-09-01T11:56:26,326   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,327      66 |  "OK",
2023-09-01T11:56:26,327         |  ^~~~
2023-09-01T11:56:26,327   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,327      67 |  "Header",
2023-09-01T11:56:26,327         |  ^~~~~~~~
2023-09-01T11:56:26,328   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,328      68 |  "String",
2023-09-01T11:56:26,328         |  ^~~~~~~~
2023-09-01T11:56:26,328   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,328      69 |  "Double",
2023-09-01T11:56:26,328         |  ^~~~~~~~
2023-09-01T11:56:26,329   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,329      70 |  "Integer",
2023-09-01T11:56:26,329         |  ^~~~~~~~~
2023-09-01T11:56:26,329   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,329      71 |  "Float",
2023-09-01T11:56:26,329         |  ^~~~~~~
2023-09-01T11:56:26,329   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,330      72 |  "Unsigned integer",
2023-09-01T11:56:26,330         |  ^~~~~~~~~~~~~~~~~~
2023-09-01T11:56:26,330   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,330      73 |  "Compressed 3D coordinate",
2023-09-01T11:56:26,330         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:56:26,330   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,330      74 |  "Closing file",
2023-09-01T11:56:26,331         |  ^~~~~~~~~~~~~~
2023-09-01T11:56:26,331   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,331      75 |  "Magic number",
2023-09-01T11:56:26,331         |  ^~~~~~~~~~~~~~
2023-09-01T11:56:26,331   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,331      76 |  "Not enough memory",
2023-09-01T11:56:26,331         |  ^~~~~~~~~~~~~~~~~~~
2023-09-01T11:56:26,332   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,332      77 |  "End of file",
2023-09-01T11:56:26,332         |  ^~~~~~~~~~~~~
2023-09-01T11:56:26,332   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-09-01T11:56:26,332      78 |  "File not found"
2023-09-01T11:56:26,332         |  ^~~~~~~~~~~~~~~~
2023-09-01T11:56:26,336   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-09-01T11:56:26,336   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,336     459 |     while (size >= num && num_of_bits < 32)
2023-09-01T11:56:26,337         |            ~~~~~^~~~~~
2023-09-01T11:56:26,337   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-09-01T11:56:26,337   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,337     505 |     while (bytes[num_of_bytes] >= num)
2023-09-01T11:56:26,337         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-01T11:56:26,339   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-09-01T11:56:26,339   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,340     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-09-01T11:56:26,340         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-01T11:56:26,340   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,340     616 |   for (i = 0; i < num_of_bytes; i++)
2023-09-01T11:56:26,340         |               ~~^~~~~~~~~~~~~~
2023-09-01T11:56:26,340   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,341     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-09-01T11:56:26,341         |               ~~^~~~~~~~~~~~~~~~
2023-09-01T11:56:26,341   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-09-01T11:56:26,341   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,341     664 |   if (lastbits < num_of_bits)
2023-09-01T11:56:26,341         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-09-01T11:56:26,344   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-09-01T11:56:26,345   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,345     785 |  if(size3>xfp->buf1size)
2023-09-01T11:56:26,345         |     ~~~~~^~~~~~~~~~~~~~
2023-09-01T11:56:26,346   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,347     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-01T11:56:26,347         |                   ^
2023-09-01T11:56:26,349   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,349     932 |     if(countmjh >= size3 ) { return -1; }
2023-09-01T11:56:26,349         |        ~~~~~~~~~^~~~~~~~
2023-09-01T11:56:26,350   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,350     935 |     if(countmjh >= size3 ) { return -1; }
2023-09-01T11:56:26,350         |        ~~~~~~~~~^~~~~~~~
2023-09-01T11:56:26,350   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,350     938 |     if(countmjh >= size3 ) { return -1; }
2023-09-01T11:56:26,350         |        ~~~~~~~~~^~~~~~~~
2023-09-01T11:56:26,350   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,351     945 |     if(countmjh >= size3 ) { return -1; }
2023-09-01T11:56:26,351         |        ~~~~~~~~~^~~~~~~~
2023-09-01T11:56:26,351   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,351     948 |     if(countmjh >= size3 ) { return -1; }
2023-09-01T11:56:26,351         |        ~~~~~~~~~^~~~~~~~
2023-09-01T11:56:26,351   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,351     951 |     if(countmjh >= size3 ) { return -1; }
2023-09-01T11:56:26,351         |        ~~~~~~~~~^~~~~~~~
2023-09-01T11:56:26,352   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-01T11:56:26,352     756 |  int smallidx,  minidx, maxidx;
2023-09-01T11:56:26,352         |                 ^~~~~~
2023-09-01T11:56:26,352   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-01T11:56:26,352     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-09-01T11:56:26,352         |                         ^~~~~~
2023-09-01T11:56:26,352   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-09-01T11:56:26,352     763 |  int errval=1;
2023-09-01T11:56:26,353         |      ^~~~~~
2023-09-01T11:56:26,353   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-09-01T11:56:26,353   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,354    1011 |  if(size3>xfp->buf1size)
2023-09-01T11:56:26,354         |     ~~~~~^~~~~~~~~~~~~~
2023-09-01T11:56:26,355   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,356    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-09-01T11:56:26,356         |                     ~~~~~~~~^~~~~~~
2023-09-01T11:56:26,356   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,356    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-09-01T11:56:26,356         |                    ~~~~~~~~^~~~~~~
2023-09-01T11:56:26,357   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,357    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-09-01T11:56:26,357         |                    ~~~~~~~~^~~~~~~
2023-09-01T11:56:26,358   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,359    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-09-01T11:56:26,359         |                  ^
2023-09-01T11:56:26,359   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,359    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-01T11:56:26,359         |                   ^
2023-09-01T11:56:26,363   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,363    1275 |  if(tmp==(unsigned int)buf2[0])
2023-09-01T11:56:26,363         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:56:26,363   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-01T11:56:26,363    1001 |  int errval;
2023-09-01T11:56:26,363         |      ^~~~~~
2023-09-01T11:56:26,366   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-09-01T11:56:26,366   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,366    1316 |  if(size3>xfp->buf1size)
2023-09-01T11:56:26,366         |     ~~~~~^~~~~~~~~~~~~~
2023-09-01T11:56:26,368   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,368    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-01T11:56:26,368         |                   ^
2023-09-01T11:56:26,371   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-09-01T11:56:26,371    1289 |  int smallidx,  maxidx, minidx;
2023-09-01T11:56:26,371         |                         ^~~~~~
2023-09-01T11:56:26,371   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-09-01T11:56:26,371    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-09-01T11:56:26,371         |                         ^~~~~~
2023-09-01T11:56:26,372   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-09-01T11:56:26,372    1297 |  int errval=1;
2023-09-01T11:56:26,372         |      ^~~~~~
2023-09-01T11:56:26,373   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-09-01T11:56:26,373   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,373    1513 |  if(size3>xfp->buf1size) {
2023-09-01T11:56:26,373         |     ~~~~~^~~~~~~~~~~~~~
2023-09-01T11:56:26,377   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,377    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-09-01T11:56:26,378         |                  ^
2023-09-01T11:56:26,378   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-09-01T11:56:26,378    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-09-01T11:56:26,378         |                   ^
2023-09-01T11:56:26,382   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-09-01T11:56:26,382    1743 |  if(tmp==(unsigned int)buf2[0])
2023-09-01T11:56:26,382         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-01T11:56:26,382   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-09-01T11:56:26,382    1504 |  int errval=1;
2023-09-01T11:56:26,382         |      ^~~~~~
2023-09-01T11:56:28,600   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-09-01T11:56:28,854   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-09-01T11:56:29,432   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-09-01T11:56:29,432   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-09-01T11:56:29,433     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-09-01T11:56:29,433         |      ^~~
2023-09-01T11:56:29,439   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-09-01T11:56:29,439   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-09-01T11:56:29,439     418 |  int nf3 = nframes * 3;
2023-09-01T11:56:29,440         |      ^~~
2023-09-01T11:56:29,444   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-09-01T11:56:29,444   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-09-01T11:56:29,444     491 |  int reading_index = 0;
2023-09-01T11:56:29,444         |      ^~~~~~~~~~~~~
2023-09-01T11:56:29,444   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-09-01T11:56:29,444     492 |  int writing_index = 0;
2023-09-01T11:56:29,445         |      ^~~~~~~~~~~~~
2023-09-01T11:56:30,197   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-09-01T11:56:30,445   In file included from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-09-01T11:56:30,445                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-09-01T11:56:30,445                    from /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-09-01T11:56:30,445                    from moleculekit/xtc_utils/xtc.cpp:1196:
2023-09-01T11:56:30,445   /tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-09-01T11:56:30,446      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-09-01T11:56:30,446         |  ^~~~~~~
2023-09-01T11:56:50,576   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:56:50,904   building 'moleculekit.tmalign' extension
2023-09-01T11:56:50,905   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-09-01T11:56:50,905   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-09-01T11:56:50,907   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-09-01T11:57:20,274   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-fgmiqs9d/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-09-01T11:57:38,674   In file included from /usr/include/c++/10/vector:72,
2023-09-01T11:57:38,674                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-09-01T11:57:38,675   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-09-01T11:57:38,675   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-09-01T11:57:38,675     426 |       vector<_Tp, _Alloc>::
2023-09-01T11:57:38,675         |       ^~~~~~~~~~~~~~~~~~~
2023-09-01T11:57:39,252   In file included from /usr/include/c++/10/vector:67,
2023-09-01T11:57:39,252                    from moleculekit/tmalign/tmalign_util.cpp:1207:
2023-09-01T11:57:39,252   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-09-01T11:57:39,252   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-01T11:57:39,253    1198 |    _M_realloc_insert(end(), __x);
2023-09-01T11:57:39,253         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-01T11:57:39,253   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-01T11:57:39,253    1198 |    _M_realloc_insert(end(), __x);
2023-09-01T11:57:39,253         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-01T11:57:39,254   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-09-01T11:57:39,254    1198 |    _M_realloc_insert(end(), __x);
2023-09-01T11:57:39,254         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-01T11:57:41,685   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-09-01T11:57:42,133   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-09-01T11:57:42,134   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.7.9'
2023-09-01T11:57:42,134   installing to build/bdist.linux-armv7l/wheel
2023-09-01T11:57:42,134   running install
2023-09-01T11:57:42,160   running install_lib
2023-09-01T11:57:42,167   creating build/bdist.linux-armv7l
2023-09-01T11:57:42,168   creating build/bdist.linux-armv7l/wheel
2023-09-01T11:57:42,171   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,180   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-01T11:57:42,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-01T11:57:42,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-01T11:57:42,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-01T11:57:42,250   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-09-01T11:57:42,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-09-01T11:57:42,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-09-01T11:57:42,274   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-09-01T11:57:42,275   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-09-01T11:57:42,278   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-09-01T11:57:42,299   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-01T11:57:42,302   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-09-01T11:57:42,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-09-01T11:57:42,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-09-01T11:57:42,325   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-09-01T11:57:42,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-09-01T11:57:42,345   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-09-01T11:57:42,347   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-01T11:57:42,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-09-01T11:57:42,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,406   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,409   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,414   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,417   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,419   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-09-01T11:57:42,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,446   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-09-01T11:57:42,448   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-09-01T11:57:42,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-09-01T11:57:42,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,480   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-09-01T11:57:42,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-09-01T11:57:42,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-09-01T11:57:42,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,507   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-09-01T11:57:42,507   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-09-01T11:57:42,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-09-01T11:57:42,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-09-01T11:57:42,535   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-09-01T11:57:42,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-09-01T11:57:42,542   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-09-01T11:57:42,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-09-01T11:57:42,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,635   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-09-01T11:57:42,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-09-01T11:57:42,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-09-01T11:57:42,657   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,683   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,704   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-01T11:57:42,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-01T11:57:42,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-01T11:57:42,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-01T11:57:42,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-01T11:57:42,713   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-01T11:57:42,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-01T11:57:42,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-01T11:57:42,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-01T11:57:42,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-09-01T11:57:42,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-01T11:57:42,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-09-01T11:57:42,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,757   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-09-01T11:57:42,758   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-01T11:57:42,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-01T11:57:42,761   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-01T11:57:42,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-01T11:57:42,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-09-01T11:57:42,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-09-01T11:57:42,769   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-09-01T11:57:42,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-09-01T11:57:42,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-09-01T11:57:42,775   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-01T11:57:42,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-01T11:57:42,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-01T11:57:42,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-01T11:57:42,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-09-01T11:57:42,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,787   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:42,794   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,795   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,819   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-09-01T11:57:42,820   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-09-01T11:57:42,822   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-09-01T11:57:42,824   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-09-01T11:57:42,832   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-09-01T11:57:42,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-09-01T11:57:42,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-09-01T11:57:42,865   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-09-01T11:57:42,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-09-01T11:57:43,077   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-09-01T11:57:43,081   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,096   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,121   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,123   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,145   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,192   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,203   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,218   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,222   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,224   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,226   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,228   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,245   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,252   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,256   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,258   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,260   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,262   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,264   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,270   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,274   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,277   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,279   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,283   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,285   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,287   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,289   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,290   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,292   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,298   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,299   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,301   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,304   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,306   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,308   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,311   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,316   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,320   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,321   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,323   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,325   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,327   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,330   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,334   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,336   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,337   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,339   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,341   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,342   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,344   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,346   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,349   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,355   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,358   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,360   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,363   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,365   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,367   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,368   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,370   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,380   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,382   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,385   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,387   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,397   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,401   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,406   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,411   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-09-01T11:57:43,413   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-09-01T11:57:43,415   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-09-01T11:57:43,416   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-09-01T11:57:43,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-09-01T11:57:43,421   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-01T11:57:43,421   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-01T11:57:43,424   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-01T11:57:43,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-01T11:57:43,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-09-01T11:57:43,430   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-09-01T11:57:43,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-09-01T11:57:43,432   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-09-01T11:57:43,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-09-01T11:57:43,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:43,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-09-01T11:57:43,468   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-09-01T11:57:43,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-09-01T11:57:43,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-09-01T11:57:43,497   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-09-01T11:57:43,498   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-09-01T11:57:43,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-09-01T11:57:43,526   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-09-01T11:57:43,526   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-09-01T11:57:43,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-09-01T11:57:43,531   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-09-01T11:57:43,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-09-01T11:57:43,536   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-09-01T11:57:43,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-09-01T11:57:43,540   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-09-01T11:57:43,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-09-01T11:57:43,543   running install_egg_info
2023-09-01T11:57:43,549   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.7.9-py3.9.egg-info
2023-09-01T11:57:43,561   running install_scripts
2023-09-01T11:57:43,609   creating build/bdist.linux-armv7l/wheel/moleculekit-1.7.9.dist-info/WHEEL
2023-09-01T11:57:43,612   creating '/tmp/pip-wheel-j0fo37m2/.tmp-mo21qsht/moleculekit-1.7.9-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-01T11:57:43,615   adding 'moleculekit/__init__.py'
2023-09-01T11:57:43,617   adding 'moleculekit/_version.py'
2023-09-01T11:57:43,618   adding 'moleculekit/align.py'
2023-09-01T11:57:43,933   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:43,945   adding 'moleculekit/bondguesser.py'
2023-09-01T11:57:44,186   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:44,195   adding 'moleculekit/config.py'
2023-09-01T11:57:44,196   adding 'moleculekit/dihedral.py'
2023-09-01T11:57:44,197   adding 'moleculekit/distance.py'
2023-09-01T11:57:44,501   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:44,512   adding 'moleculekit/home.py'
2023-09-01T11:57:44,514   adding 'moleculekit/logging.ini'
2023-09-01T11:57:44,527   adding 'moleculekit/molecule.py'
2023-09-01T11:57:44,751   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:44,760   adding 'moleculekit/opm.py'
2023-09-01T11:57:44,762   adding 'moleculekit/periodictable.py'
2023-09-01T11:57:44,764   adding 'moleculekit/pymolgraphics.py'
2023-09-01T11:57:44,765   adding 'moleculekit/rcsb.py'
2023-09-01T11:57:44,766   adding 'moleculekit/rdkitintegration.py'
2023-09-01T11:57:44,778   adding 'moleculekit/readers.py'
2023-09-01T11:57:45,380   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:45,404   adding 'moleculekit/util.py'
2023-09-01T11:57:45,405   adding 'moleculekit/version.py'
2023-09-01T11:57:45,407   adding 'moleculekit/viewer.py'
2023-09-01T11:57:45,408   adding 'moleculekit/vmd_wrapper'
2023-09-01T11:57:45,410   adding 'moleculekit/vmdgraphics.py'
2023-09-01T11:57:45,412   adding 'moleculekit/vmdviewer.py'
2023-09-01T11:57:45,644   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:45,656   adding 'moleculekit/writers.py'
2023-09-01T11:57:45,923   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:45,932   adding 'moleculekit/atomselect/__init__.py'
2023-09-01T11:57:45,934   adding 'moleculekit/atomselect/analyze.py'
2023-09-01T11:57:45,936   adding 'moleculekit/atomselect/atomselect.py'
2023-09-01T11:57:45,938   adding 'moleculekit/atomselect/languageparser.py'
2023-09-01T11:57:46,042   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-09-01T11:57:46,053   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-09-01T11:57:46,144   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-09-01T11:57:46,153   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-09-01T11:57:46,251   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-09-01T11:57:46,261   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-09-01T11:57:46,263   adding 'moleculekit/interactions/__init__.py'
2023-09-01T11:57:46,544   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:46,811   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:46,822   adding 'moleculekit/interactions/interactions.py'
2023-09-01T11:57:47,101   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:47,386   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-09-01T11:57:47,487   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-09-01T11:57:47,496   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-09-01T11:57:47,587   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-09-01T11:57:47,596   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-09-01T11:57:47,687   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-09-01T11:57:47,697   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-09-01T11:57:47,788   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-09-01T11:57:47,797   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-09-01T11:57:47,884   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-09-01T11:57:47,892   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-09-01T11:57:47,893   adding 'moleculekit/pdbx/__init__.py'
2023-09-01T11:57:47,897   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-09-01T11:57:47,900   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-09-01T11:57:47,902   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-09-01T11:57:47,904   adding 'moleculekit/pdbx/reader/__init__.py'
2023-09-01T11:57:47,906   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-09-01T11:57:47,907   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-09-01T11:57:47,909   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-09-01T11:57:47,910   adding 'moleculekit/pdbx/tests/__init__.py'
2023-09-01T11:57:47,912   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-09-01T11:57:47,913   adding 'moleculekit/pdbx/writer/__init__.py'
2023-09-01T11:57:47,915   adding 'moleculekit/ply/__init__.py'
2023-09-01T11:57:47,919   adding 'moleculekit/ply/lex.py'
2023-09-01T11:57:47,931   adding 'moleculekit/ply/yacc.py'
2023-09-01T11:57:47,933   adding 'moleculekit/projections/__init__.py'
2023-09-01T11:57:47,935   adding 'moleculekit/projections/metriccoordinate.py'
2023-09-01T11:57:47,939   adding 'moleculekit/projections/metricdihedral.py'
2023-09-01T11:57:47,943   adding 'moleculekit/projections/metricdistance.py'
2023-09-01T11:57:47,945   adding 'moleculekit/projections/metricfluctuation.py'
2023-09-01T11:57:47,947   adding 'moleculekit/projections/metricgyration.py'
2023-09-01T11:57:47,951   adding 'moleculekit/projections/metricplumed2.py'
2023-09-01T11:57:47,952   adding 'moleculekit/projections/metricrmsd.py'
2023-09-01T11:57:47,955   adding 'moleculekit/projections/metricsasa.py'
2023-09-01T11:57:47,957   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-09-01T11:57:47,958   adding 'moleculekit/projections/metricshell.py'
2023-09-01T11:57:47,960   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-09-01T11:57:47,962   adding 'moleculekit/projections/metrictmscore.py'
2023-09-01T11:57:47,963   adding 'moleculekit/projections/projection.py'
2023-09-01T11:57:47,964   adding 'moleculekit/projections/util.py'
2023-09-01T11:57:47,966   adding 'moleculekit/share/ALA.cif'
2023-09-01T11:57:47,968   adding 'moleculekit/share/backbone.cif'
2023-09-01T11:57:49,270   adding 'moleculekit/share/opm_sequences.json'
2023-09-01T11:57:49,355   adding 'moleculekit/share/atomselect/atomselect.json'
2023-09-01T11:57:49,360   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-09-01T11:57:49,361   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-09-01T11:57:49,362   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-09-01T11:57:49,364   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-09-01T11:57:49,365   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-09-01T11:57:49,366   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-09-01T11:57:49,367   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-09-01T11:57:49,368   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-09-01T11:57:49,370   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-09-01T11:57:49,371   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-09-01T11:57:49,372   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-09-01T11:57:49,374   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-09-01T11:57:49,375   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-09-01T11:57:49,376   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-09-01T11:57:49,377   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-09-01T11:57:49,378   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-09-01T11:57:49,380   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-09-01T11:57:49,381   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-09-01T11:57:49,382   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-09-01T11:57:49,383   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-09-01T11:57:49,385   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-09-01T11:57:49,386   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-09-01T11:57:49,387   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-09-01T11:57:49,389   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-09-01T11:57:49,390   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-09-01T11:57:49,391   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-09-01T11:57:49,393   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-09-01T11:57:49,394   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-09-01T11:57:49,395   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-09-01T11:57:49,396   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-09-01T11:57:49,397   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-09-01T11:57:49,399   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-09-01T11:57:49,400   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-09-01T11:57:49,401   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-09-01T11:57:49,402   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-09-01T11:57:49,404   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-09-01T11:57:49,405   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-09-01T11:57:49,406   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-09-01T11:57:49,407   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-09-01T11:57:49,409   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-09-01T11:57:49,410   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-09-01T11:57:49,411   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-09-01T11:57:49,412   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-09-01T11:57:49,414   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-09-01T11:57:49,415   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-09-01T11:57:49,416   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-09-01T11:57:49,417   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-09-01T11:57:49,419   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-09-01T11:57:49,420   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-09-01T11:57:49,421   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-09-01T11:57:49,422   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-09-01T11:57:49,423   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-09-01T11:57:49,425   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-09-01T11:57:49,426   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-09-01T11:57:49,427   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-09-01T11:57:49,428   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-09-01T11:57:49,430   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-09-01T11:57:49,431   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-09-01T11:57:49,432   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-09-01T11:57:49,433   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-09-01T11:57:49,434   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-09-01T11:57:49,435   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-09-01T11:57:49,437   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-09-01T11:57:49,438   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-09-01T11:57:49,439   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-09-01T11:57:49,440   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-09-01T11:57:49,441   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-09-01T11:57:49,443   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-09-01T11:57:49,444   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-09-01T11:57:49,445   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-09-01T11:57:49,446   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-09-01T11:57:49,447   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-09-01T11:57:49,449   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-09-01T11:57:49,450   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-09-01T11:57:49,451   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-09-01T11:57:49,452   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-09-01T11:57:49,453   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-09-01T11:57:49,454   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-09-01T11:57:49,456   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-09-01T11:57:49,457   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-09-01T11:57:49,458   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-09-01T11:57:49,459   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-09-01T11:57:49,461   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-09-01T11:57:49,462   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-09-01T11:57:49,463   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-09-01T11:57:49,464   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-09-01T11:57:49,465   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-09-01T11:57:49,467   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-09-01T11:57:49,468   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-09-01T11:57:49,469   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-09-01T11:57:49,470   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-09-01T11:57:49,472   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-09-01T11:57:49,473   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-09-01T11:57:49,474   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-09-01T11:57:49,475   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-09-01T11:57:49,476   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-09-01T11:57:49,478   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-09-01T11:57:49,479   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-09-01T11:57:49,480   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-09-01T11:57:49,481   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-09-01T11:57:49,483   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-09-01T11:57:49,484   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-09-01T11:57:49,485   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-09-01T11:57:49,486   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-09-01T11:57:49,487   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-09-01T11:57:49,489   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-09-01T11:57:49,490   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-09-01T11:57:49,491   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-09-01T11:57:49,492   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-09-01T11:57:49,494   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-09-01T11:57:49,495   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-09-01T11:57:49,496   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-09-01T11:57:49,497   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-09-01T11:57:49,499   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-09-01T11:57:49,500   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-09-01T11:57:49,501   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-09-01T11:57:49,502   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-09-01T11:57:49,505   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-09-01T11:57:49,507   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-09-01T11:57:49,508   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-09-01T11:57:49,509   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-09-01T11:57:49,511   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-09-01T11:57:49,512   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-09-01T11:57:49,513   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-09-01T11:57:49,514   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-09-01T11:57:49,515   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-09-01T11:57:49,517   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-09-01T11:57:49,518   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-09-01T11:57:49,519   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-09-01T11:57:49,521   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-09-01T11:57:49,522   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-09-01T11:57:49,523   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-09-01T11:57:49,524   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-09-01T11:57:49,526   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-09-01T11:57:49,527   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-09-01T11:57:49,528   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-09-01T11:57:49,530   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-09-01T11:57:49,531   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-09-01T11:57:49,532   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-09-01T11:57:49,533   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-09-01T11:57:49,535   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-09-01T11:57:49,536   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-09-01T11:57:49,537   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-09-01T11:57:49,538   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-09-01T11:57:49,540   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-09-01T11:57:49,541   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-09-01T11:57:49,542   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-09-01T11:57:49,543   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-09-01T11:57:49,545   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-09-01T11:57:49,546   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-09-01T11:57:49,547   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-09-01T11:57:49,548   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-09-01T11:57:49,550   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-09-01T11:57:49,551   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-09-01T11:57:49,552   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-09-01T11:57:49,554   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-09-01T11:57:49,555   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-09-01T11:57:49,556   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-09-01T11:57:49,557   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-09-01T11:57:49,559   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-09-01T11:57:49,560   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-09-01T11:57:49,561   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-09-01T11:57:49,562   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-09-01T11:57:49,564   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-09-01T11:57:49,565   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-09-01T11:57:49,566   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-09-01T11:57:49,567   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-09-01T11:57:49,569   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-09-01T11:57:49,570   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-09-01T11:57:49,571   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-09-01T11:57:49,573   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-09-01T11:57:49,574   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-09-01T11:57:49,575   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-09-01T11:57:49,576   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-09-01T11:57:49,577   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-09-01T11:57:49,579   adding 'moleculekit/smallmol/__init__.py'
2023-09-01T11:57:49,584   adding 'moleculekit/smallmol/smallmol.py'
2023-09-01T11:57:49,587   adding 'moleculekit/smallmol/smallmollib.py'
2023-09-01T11:57:49,589   adding 'moleculekit/smallmol/test_smallmol.py'
2023-09-01T11:57:49,590   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-09-01T11:57:49,592   adding 'moleculekit/smallmol/util.py'
2023-09-01T11:57:49,594   adding 'moleculekit/smallmol/tools/__init__.py'
2023-09-01T11:57:49,596   adding 'moleculekit/smallmol/tools/clustering.py'
2023-09-01T11:57:49,598   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-09-01T11:57:49,600   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-09-01T11:57:49,689   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-09-01T11:57:49,698   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-09-01T11:57:49,699   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-09-01T11:57:49,701   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-09-01T11:57:49,718   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-09-01T11:57:49,722   adding 'moleculekit/tools/__init__.py'
2023-09-01T11:57:49,724   adding 'moleculekit/tools/atomtyper.py'
2023-09-01T11:57:49,726   adding 'moleculekit/tools/autosegment.py'
2023-09-01T11:57:49,728   adding 'moleculekit/tools/crystalpacking.py'
2023-09-01T11:57:49,731   adding 'moleculekit/tools/detect.py'
2023-09-01T11:57:49,733   adding 'moleculekit/tools/docking.py'
2023-09-01T11:57:49,735   adding 'moleculekit/tools/graphalignment.py'
2023-09-01T11:57:49,736   adding 'moleculekit/tools/hhblitsprofile.py'
2023-09-01T11:57:49,738   adding 'moleculekit/tools/moleculechecks.py'
2023-09-01T11:57:49,744   adding 'moleculekit/tools/preparation.py'
2023-09-01T11:57:49,747   adding 'moleculekit/tools/preparation_customres.py'
2023-09-01T11:57:49,749   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-09-01T11:57:49,752   adding 'moleculekit/tools/voxeldescriptors.py'
2023-09-01T11:57:49,754   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-09-01T11:57:49,756   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-09-01T11:57:49,844   adding 'moleculekit/wrapping/wrapping.cpp'
2023-09-01T11:57:49,852   adding 'moleculekit/wrapping/wrapping.pyx'
2023-09-01T11:57:49,941   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-09-01T11:57:49,950   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-09-01T11:57:49,951   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-09-01T11:57:49,954   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-09-01T11:57:49,956   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-09-01T11:57:49,957   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-09-01T11:57:49,964   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-09-01T11:57:49,966   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-09-01T11:57:49,968   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-09-01T11:57:49,970   adding 'moleculekit-1.7.9.dist-info/LICENSE'
2023-09-01T11:57:49,971   adding 'moleculekit-1.7.9.dist-info/METADATA'
2023-09-01T11:57:49,972   adding 'moleculekit-1.7.9.dist-info/WHEEL'
2023-09-01T11:57:49,973   adding 'moleculekit-1.7.9.dist-info/top_level.txt'
2023-09-01T11:57:49,978   adding 'moleculekit-1.7.9.dist-info/RECORD'
2023-09-01T11:57:50,131   removing build/bdist.linux-armv7l/wheel
2023-09-01T11:57:50,400   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-09-01T11:57:50,662   Created wheel for moleculekit: filename=moleculekit-1.7.9-cp39-cp39-linux_armv7l.whl size=12537669 sha256=da8f62bdc6e75f572e2af10f6982b4a0941e58ddf39e84739588b282f1f6bfb0
2023-09-01T11:57:50,663   Stored in directory: /tmp/pip-ephem-wheel-cache-_oe07dqk/wheels/30/1b/4a/c0df5d3ad4bfc4b55402147e8525e618a2646b4996202c7a8c
2023-09-01T11:57:50,688 Successfully built moleculekit
2023-09-01T11:57:50,976 Removed build tracker: '/tmp/pip-build-tracker-0dyqv6ak'