2023-09-06T08:06:49,449 Created temporary directory: /tmp/pip-build-tracker-6v957vk9
2023-09-06T08:06:49,453 Initialized build tracking at /tmp/pip-build-tracker-6v957vk9
2023-09-06T08:06:49,453 Created build tracker: /tmp/pip-build-tracker-6v957vk9
2023-09-06T08:06:49,454 Entered build tracker: /tmp/pip-build-tracker-6v957vk9
2023-09-06T08:06:49,455 Created temporary directory: /tmp/pip-wheel-bbdvmx5c
2023-09-06T08:06:49,465 Created temporary directory: /tmp/pip-ephem-wheel-cache-zp9lwvnj
2023-09-06T08:06:49,520 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-06T08:06:49,528 2 location(s) to search for versions of cryodrgn:
2023-09-06T08:06:49,528 * https://pypi.org/simple/cryodrgn/
2023-09-06T08:06:49,528 * https://www.piwheels.org/simple/cryodrgn/
2023-09-06T08:06:49,529 Fetching project page and analyzing links: https://pypi.org/simple/cryodrgn/
2023-09-06T08:06:49,530 Getting page https://pypi.org/simple/cryodrgn/
2023-09-06T08:06:49,539 Found index url https://pypi.org/simple/
2023-09-06T08:06:49,732 Fetched page https://pypi.org/simple/cryodrgn/ as application/vnd.pypi.simple.v1+json
2023-09-06T08:06:49,740   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/50/91/1306b78002812cfa9932e2691070f765b75d4385e4bbf559d211a4e71025/cryodrgn-1.1.1-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,741   Found link https://files.pythonhosted.org/packages/24/08/8de601e5f4fe8a5177c4191c0be1848d2952dad0ef149820aadadbee2e08/cryodrgn-1.1.1.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 1.1.1
2023-09-06T08:06:49,742   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/e9/78/bdf1fd8d9394a0025206a4d1478b21170d7392e35132522c5ef87855fe73/cryodrgn-2.1.0b5-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,743   Found link https://files.pythonhosted.org/packages/68/26/6669e39abe77e36bd49d1f21f68ed04961bdd0a76f909b497c96ce78b60b/cryodrgn-2.1.0b5.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.1.0b5
2023-09-06T08:06:49,744   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/7d/d8/dae369c30a1b908f5713f7b46f4948aed0253f9e7e124c98e6c7b15d7e57/cryodrgn-2.2.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,745   Found link https://files.pythonhosted.org/packages/6f/19/b950e5eb7a6d3c8d122bec56e59c447d3585a660a7605112a5346816014e/cryodrgn-2.2.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0b0
2023-09-06T08:06:49,746   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/6d/79/97a3f0118ef0c156bf5eaf931f4a5855a5c5d27dedd04aaa0bcf57fe1f7c/cryodrgn-2.2.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,747   Found link https://files.pythonhosted.org/packages/03/50/3259e1a4efc92c945d1ae88fd5765a0ba4db77f0a742fc0e0a206cd781ac/cryodrgn-2.2.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.2.0
2023-09-06T08:06:49,748   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/03/29/f9750c89414937c8700d9d5aa167d9ed1e3157ebb6a9971effb4bcbe8bec/cryodrgn-2.3.0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,749   Found link https://files.pythonhosted.org/packages/d2/69/c5d8c6da2da86575a985307f67f214a0f56a7f79d73492a5184170ea7036/cryodrgn-2.3.0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 2.3.0
2023-09-06T08:06:49,750   Skipping link: No binaries permitted for cryodrgn: https://files.pythonhosted.org/packages/08/8d/d0ff2954b5825e3b771a943b40423d57195aec5c30d4b770250ac822c7fe/cryodrgn-3.0.0b0-py3-none-any.whl (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,751   Found link https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz (from https://pypi.org/simple/cryodrgn/) (requires-python:>=3.7), version: 3.0.0b0
2023-09-06T08:06:49,752 Fetching project page and analyzing links: https://www.piwheels.org/simple/cryodrgn/
2023-09-06T08:06:49,752 Getting page https://www.piwheels.org/simple/cryodrgn/
2023-09-06T08:06:49,755 Found index url https://www.piwheels.org/simple/
2023-09-06T08:06:49,988 Fetched page https://www.piwheels.org/simple/cryodrgn/ as text/html
2023-09-06T08:06:49,994   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.3.0-py3-none-any.whl#sha256=d3f519ed4819eac7456ccee2c974e41070b80d0e895797cf940ea8b8ca729631 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,995   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0-py3-none-any.whl#sha256=6d705695a229d236db29c0b847f18e336bc53358ef3bc125cb158bd743f53bc9 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,995   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.2.0b0-py3-none-any.whl#sha256=ded8ccf2e343961488fc50ee73479e8c5a9bc61dd79a83f509f96e86c01e9306 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,996   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-2.1.0b5-py3-none-any.whl#sha256=f43221397e48ac64c02c3009e927ea1212a8ad59ed1e20421a65287c9e853652 (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,996   Skipping link: No binaries permitted for cryodrgn: https://www.piwheels.org/simple/cryodrgn/cryodrgn-1.1.1-py3-none-any.whl#sha256=b3cc3928fe1cc0f347265449cd329a61f3b7eadb9f833c26748b681c220cb4ad (from https://www.piwheels.org/simple/cryodrgn/) (requires-python:>=3.7)
2023-09-06T08:06:49,997 Skipping link: not a file: https://www.piwheels.org/simple/cryodrgn/
2023-09-06T08:06:49,997 Skipping link: not a file: https://pypi.org/simple/cryodrgn/
2023-09-06T08:06:50,028 Given no hashes to check 1 links for project 'cryodrgn': discarding no candidates
2023-09-06T08:06:50,056 Collecting cryodrgn==3.0.0b0
2023-09-06T08:06:50,061   Created temporary directory: /tmp/pip-unpack-xv5of9mm
2023-09-06T08:06:50,261   Downloading cryodrgn-3.0.0b0.tar.gz (35.7 MB)
2023-09-06T08:07:04,764   Added cryodrgn==3.0.0b0 from https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz to build tracker '/tmp/pip-build-tracker-6v957vk9'
2023-09-06T08:07:04,778   Created temporary directory: /tmp/pip-build-env-2puo0sdl
2023-09-06T08:07:04,799   Installing build dependencies: started
2023-09-06T08:07:04,801   Running command pip subprocess to install build dependencies
2023-09-06T08:07:07,504   Using pip 23.2.1 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)
2023-09-06T08:07:08,667   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-06T08:07:10,565     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/b8/49/b3b29c52b09075fb77f69309763a563b4054d5808a3f3b95df3a62ef3d3f/setuptools-68.1.0-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8)
2023-09-06T08:07:10,568     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/83/b0/18310b45f6eec3757c0554dbc1e03f2f7685c8a87831aea6adc1276faacc/setuptools-68.1.0.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8)
2023-09-06T08:07:10,571     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/4f/ab/0bcfebdfc3bfa8554b2b2c97a555569c4c1ebc74ea288741ea8326c51906/setuptools-68.1.2-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8)
2023-09-06T08:07:10,574     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/19/20/d8dd9d8becaf3e2d6fdc17cc41870d5ada5ceda518996cf5968c2ca71bd8/setuptools-68.1.2.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.8)
2023-09-06T08:07:11,184     Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.1.2-py3-none-any.whl#sha256=9e076b8e4f5535e0e67305a15e9eb418006751b9bf0bb8d0a367d09ad0adf3a1 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8)
2023-09-06T08:07:11,187     Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/setuptools/setuptools-68.1.0-py3-none-any.whl#sha256=0637a8df7f9d79ffffa7010fdd3db5ca70836acda6994af5f7edb9524838aa23 (from https://www.piwheels.org/simple/setuptools/) (requires-python:>=3.8)
2023-09-06T08:07:12,515   Collecting setuptools>=61.0
2023-09-06T08:07:12,707     Using cached https://www.piwheels.org/simple/setuptools/setuptools-68.0.0-py3-none-any.whl (804 kB)
2023-09-06T08:07:13,567   Collecting setuptools_scm>=6.2
2023-09-06T08:07:13,605     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
2023-09-06T08:07:14,471   Collecting packaging>=20.0 (from setuptools_scm>=6.2)
2023-09-06T08:07:14,507     Using cached https://www.piwheels.org/simple/packaging/packaging-23.1-py3-none-any.whl (48 kB)
2023-09-06T08:07:14,779   Collecting typing-extensions (from setuptools_scm>=6.2)
2023-09-06T08:07:14,823     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.7.1-py3-none-any.whl (33 kB)
2023-09-06T08:07:15,082   Collecting tomli>=1.0.0 (from setuptools_scm>=6.2)
2023-09-06T08:07:15,115     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-09-06T08:07:15,633     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/cc/37/db7ba97e676af155f5fcb1a35466f446eadc9104e25b83366e8088c9c926/importlib_metadata-6.8.0-py3-none-any.whl (from https://pypi.org/simple/importlib-metadata/) (requires-python:>=3.8)
2023-09-06T08:07:15,636     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/33/44/ae06b446b8d8263d712a211e959212083a5eda2bf36d57ca7415e03f6f36/importlib_metadata-6.8.0.tar.gz (from https://pypi.org/simple/importlib-metadata/) (requires-python:>=3.8)
2023-09-06T08:07:15,753     Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.8.0-py3-none-any.whl#sha256=eee927b02daa5ef8a9da352c7edb8d87e3b0fb0ac03c36ec3b0c16a735819c74 (from https://www.piwheels.org/simple/importlib-metadata/) (requires-python:>=3.8)
2023-09-06T08:07:16,129   Collecting importlib-metadata (from setuptools_scm>=6.2)
2023-09-06T08:07:16,163     Using cached https://www.piwheels.org/simple/importlib-metadata/importlib_metadata-6.7.0-py3-none-any.whl (22 kB)
2023-09-06T08:07:16,567     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/ad/be/a6c11f5e0c042fb97e6b567730f55c56b2fe4089304ae66207a54fa49d7e/zipp-3.16.0-py3-none-any.whl (from https://pypi.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,571     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/52/9a/d93b483b9a744e7f71b311ee9bb5a228f6846219ceb5d6dbcb3eddcd1932/zipp-3.16.0.tar.gz (from https://pypi.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,574     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/a1/3b/385e3b43200af0b9a13d03c234efbd9d40c6d73ab63fde1c097a2daacdea/zipp-3.16.1-py3-none-any.whl (from https://pypi.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,577     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/ef/76/5a9e1553f00ee55a6de6b3c176aa4c859c7f64b9bbdc48804df174dee890/zipp-3.16.1.tar.gz (from https://pypi.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,580     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/8c/08/d3006317aefe25ea79d3b76c9650afabaf6d63d1c8443b236e7405447503/zipp-3.16.2-py3-none-any.whl (from https://pypi.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,583     Link requires a different Python (3.7.3 not in: '>=3.8'): https://files.pythonhosted.org/packages/e2/45/f3b987ad5bf9e08095c1ebe6352238be36f25dd106fde424a160061dce6d/zipp-3.16.2.tar.gz (from https://pypi.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,651     Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/zipp/zipp-3.16.2-py3-none-any.whl#sha256=ffebb2bccce49efecaa7b6d4d273d64e047c4d0ea72b6f04c05a11a9f49a753d (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,655     Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/zipp/zipp-3.16.1-py3-none-any.whl#sha256=8ba47289cfe5ead30d0cda58334ebb39b0e27609aaa680c24d2323927fd8696e (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,658     Link requires a different Python (3.7.3 not in: '>=3.8'): https://www.piwheels.org/simple/zipp/zipp-3.16.0-py3-none-any.whl#sha256=1338e8df1aff24947954617867855699925e8e9e87e75e0853a68fe6cc2b646b (from https://www.piwheels.org/simple/zipp/) (requires-python:>=3.8)
2023-09-06T08:07:16,825   Collecting zipp>=0.5 (from importlib-metadata->setuptools_scm>=6.2)
2023-09-06T08:07:16,856     Using cached https://www.piwheels.org/simple/zipp/zipp-3.15.0-py3-none-any.whl (6.8 kB)
2023-09-06T08:07:21,421   Installing collected packages: zipp, typing-extensions, tomli, setuptools, packaging, importlib-metadata, setuptools_scm
2023-09-06T08:07:26,649   Successfully installed importlib-metadata-6.7.0 packaging-23.1 setuptools-68.0.0 setuptools_scm-7.1.0 tomli-2.0.1 typing-extensions-4.7.1 zipp-3.15.0
2023-09-06T08:07:27,631   Installing build dependencies: finished with status 'done'
2023-09-06T08:07:27,645   Getting requirements to build wheel: started
2023-09-06T08:07:27,647   Running command Getting requirements to build wheel
2023-09-06T08:07:29,762   running egg_info
2023-09-06T08:07:29,776   writing cryodrgn.egg-info/PKG-INFO
2023-09-06T08:07:29,781   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2023-09-06T08:07:29,786   writing entry points to cryodrgn.egg-info/entry_points.txt
2023-09-06T08:07:29,789   writing requirements to cryodrgn.egg-info/requires.txt
2023-09-06T08:07:29,792   writing top-level names to cryodrgn.egg-info/top_level.txt
2023-09-06T08:07:29,904   /tmp/pip-build-env-2puo0sdl/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-09-06T08:07:29,904     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-09-06T08:07:29,904   listing git files failed - pretending there aren't any
2023-09-06T08:07:29,923   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-09-06T08:07:29,946   reading manifest template 'MANIFEST.in'
2023-09-06T08:07:29,951   adding license file 'LICENSE.txt'
2023-09-06T08:07:29,984   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-09-06T08:07:30,192   Getting requirements to build wheel: finished with status 'done'
2023-09-06T08:07:30,232   Installing backend dependencies: started
2023-09-06T08:07:30,235   Running command pip subprocess to install backend dependencies
2023-09-06T08:07:32,940   Using pip 23.2.1 from /usr/local/lib/python3.7/dist-packages/pip (python 3.7)
2023-09-06T08:07:34,123   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-06T08:07:34,985   Collecting wheel
2023-09-06T08:07:35,023     Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.2-py3-none-any.whl (64 kB)
2023-09-06T08:07:38,559   Installing collected packages: wheel
2023-09-06T08:07:39,015     Creating /tmp/pip-build-env-2puo0sdl/normal/bin
2023-09-06T08:07:39,019     changing mode of /tmp/pip-build-env-2puo0sdl/normal/bin/wheel to 755
2023-09-06T08:07:39,046   Successfully installed wheel-0.41.2
2023-09-06T08:07:39,888   Installing backend dependencies: finished with status 'done'
2023-09-06T08:07:39,894   Created temporary directory: /tmp/pip-modern-metadata-oe2ext0l
2023-09-06T08:07:39,900   Preparing metadata (pyproject.toml): started
2023-09-06T08:07:39,903   Running command Preparing metadata (pyproject.toml)
2023-09-06T08:07:42,089   running dist_info
2023-09-06T08:07:42,105   creating /tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info
2023-09-06T08:07:42,119   writing /tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info/PKG-INFO
2023-09-06T08:07:42,126   writing dependency_links to /tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info/dependency_links.txt
2023-09-06T08:07:42,130   writing entry points to /tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info/entry_points.txt
2023-09-06T08:07:42,133   writing requirements to /tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info/requires.txt
2023-09-06T08:07:42,136   writing top-level names to /tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info/top_level.txt
2023-09-06T08:07:42,138   writing manifest file '/tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info/SOURCES.txt'
2023-09-06T08:07:42,275   /tmp/pip-build-env-2puo0sdl/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-09-06T08:07:42,276     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-09-06T08:07:42,276   listing git files failed - pretending there aren't any
2023-09-06T08:07:42,295   reading manifest file '/tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info/SOURCES.txt'
2023-09-06T08:07:42,302   reading manifest template 'MANIFEST.in'
2023-09-06T08:07:42,308   adding license file 'LICENSE.txt'
2023-09-06T08:07:42,321   writing manifest file '/tmp/pip-modern-metadata-oe2ext0l/cryodrgn.egg-info/SOURCES.txt'
2023-09-06T08:07:42,324   creating '/tmp/pip-modern-metadata-oe2ext0l/cryodrgn-3.0.0b0.dist-info'
2023-09-06T08:07:42,653   Preparing metadata (pyproject.toml): finished with status 'done'
2023-09-06T08:07:42,673   Source in /tmp/pip-wheel-bbdvmx5c/cryodrgn_cd816f2f465842bc99fe9b58dbd74b3c has version 3.0.0b0, which satisfies requirement cryodrgn==3.0.0b0 from https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz
2023-09-06T08:07:42,675   Removed cryodrgn==3.0.0b0 from https://files.pythonhosted.org/packages/74/92/6ca0ee245ed52438a0f471cfb29de766b9822010f760da08875be946e827/cryodrgn-3.0.0b0.tar.gz from build tracker '/tmp/pip-build-tracker-6v957vk9'
2023-09-06T08:07:42,694 Created temporary directory: /tmp/pip-unpack-0njrl0py
2023-09-06T08:07:42,696 Created temporary directory: /tmp/pip-unpack-pcah1_07
2023-09-06T08:07:42,801 Building wheels for collected packages: cryodrgn
2023-09-06T08:07:42,811   Created temporary directory: /tmp/pip-wheel-i1cwea13
2023-09-06T08:07:42,811   Destination directory: /tmp/pip-wheel-i1cwea13
2023-09-06T08:07:42,816   Building wheel for cryodrgn (pyproject.toml): started
2023-09-06T08:07:42,818   Running command Building wheel for cryodrgn (pyproject.toml)
2023-09-06T08:07:44,845   running bdist_wheel
2023-09-06T08:07:44,909   running build
2023-09-06T08:07:44,909   running build_py
2023-09-06T08:07:44,928   creating build
2023-09-06T08:07:44,928   creating build/lib
2023-09-06T08:07:44,930   creating build/lib/cryodrgn
2023-09-06T08:07:44,932   copying cryodrgn/shift_grid3.py -> build/lib/cryodrgn
2023-09-06T08:07:44,936   copying cryodrgn/source.py -> build/lib/cryodrgn
2023-09-06T08:07:44,941   copying cryodrgn/lie_tools.py -> build/lib/cryodrgn
2023-09-06T08:07:44,945   copying cryodrgn/_version.py -> build/lib/cryodrgn
2023-09-06T08:07:44,948   copying cryodrgn/ctf.py -> build/lib/cryodrgn
2023-09-06T08:07:44,952   copying cryodrgn/losses.py -> build/lib/cryodrgn
2023-09-06T08:07:44,955   copying cryodrgn/beta_schedule.py -> build/lib/cryodrgn
2023-09-06T08:07:44,958   copying cryodrgn/models.py -> build/lib/cryodrgn
2023-09-06T08:07:44,964   copying cryodrgn/__init__.py -> build/lib/cryodrgn
2023-09-06T08:07:44,968   copying cryodrgn/__main__.py -> build/lib/cryodrgn
2023-09-06T08:07:44,971   copying cryodrgn/lattice.py -> build/lib/cryodrgn
2023-09-06T08:07:44,975   copying cryodrgn/analysis.py -> build/lib/cryodrgn
2023-09-06T08:07:44,980   copying cryodrgn/mrc.py -> build/lib/cryodrgn
2023-09-06T08:07:44,984   copying cryodrgn/dataset.py -> build/lib/cryodrgn
2023-09-06T08:07:44,989   copying cryodrgn/make_healpy.py -> build/lib/cryodrgn
2023-09-06T08:07:44,992   copying cryodrgn/config.py -> build/lib/cryodrgn
2023-09-06T08:07:44,995   copying cryodrgn/starfile.py -> build/lib/cryodrgn
2023-09-06T08:07:44,999   copying cryodrgn/utils_exec.py -> build/lib/cryodrgn
2023-09-06T08:07:45,002   copying cryodrgn/shift_grid.py -> build/lib/cryodrgn
2023-09-06T08:07:45,006   copying cryodrgn/utils.py -> build/lib/cryodrgn
2023-09-06T08:07:45,010   copying cryodrgn/so3_grid.py -> build/lib/cryodrgn
2023-09-06T08:07:45,013   copying cryodrgn/pose.py -> build/lib/cryodrgn
2023-09-06T08:07:45,017   copying cryodrgn/pose_search.py -> build/lib/cryodrgn
2023-09-06T08:07:45,021   copying cryodrgn/fft.py -> build/lib/cryodrgn
2023-09-06T08:07:45,028   creating build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,030   copying cryodrgn/commands_utils/write_cs.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,033   copying cryodrgn/commands_utils/flip_hand.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,037   copying cryodrgn/commands_utils/concat_pkls.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,040   copying cryodrgn/commands_utils/__init__.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,043   copying cryodrgn/commands_utils/add_psize.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,046   copying cryodrgn/commands_utils/write_star.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,050   copying cryodrgn/commands_utils/view_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,053   copying cryodrgn/commands_utils/filter_pkl.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,056   copying cryodrgn/commands_utils/filter_star.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,060   copying cryodrgn/commands_utils/view_header.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,063   copying cryodrgn/commands_utils/select_clusters.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,066   copying cryodrgn/commands_utils/invert_contrast.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,069   copying cryodrgn/commands_utils/view_cs_header.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,072   copying cryodrgn/commands_utils/phase_flip.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,076   copying cryodrgn/commands_utils/select_random.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,079   copying cryodrgn/commands_utils/filter_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,083   copying cryodrgn/commands_utils/translate_mrcs.py -> build/lib/cryodrgn/commands_utils
2023-09-06T08:07:45,089   creating build/lib/cryodrgn/commands
2023-09-06T08:07:45,091   copying cryodrgn/commands/parse_ctf_csparc.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,095   copying cryodrgn/commands/eval_images.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,099   copying cryodrgn/commands/parse_ctf_star.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,102   copying cryodrgn/commands/train_nn.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,107   copying cryodrgn/commands/pc_traversal.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,110   copying cryodrgn/commands/parse_pose_csparc.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,113   copying cryodrgn/commands/abinit_het.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,119   copying cryodrgn/commands/backproject_voxel.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,123   copying cryodrgn/commands/analyze_landscape.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,127   copying cryodrgn/commands/__init__.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,130   copying cryodrgn/commands/direct_traversal.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,134   copying cryodrgn/commands/downsample.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,139   copying cryodrgn/commands/graph_traversal.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,143   copying cryodrgn/commands/abinit_homo.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,149   copying cryodrgn/commands/eval_vol.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,153   copying cryodrgn/commands/view_config.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,157   copying cryodrgn/commands/preprocess.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,162   copying cryodrgn/commands/analyze.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,167   copying cryodrgn/commands/train_vae.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,172   copying cryodrgn/commands/parse_pose_star.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,177   copying cryodrgn/commands/analyze_landscape_full.py -> build/lib/cryodrgn/commands
2023-09-06T08:07:45,181   running egg_info
2023-09-06T08:07:45,195   writing cryodrgn.egg-info/PKG-INFO
2023-09-06T08:07:45,201   writing dependency_links to cryodrgn.egg-info/dependency_links.txt
2023-09-06T08:07:45,205   writing entry points to cryodrgn.egg-info/entry_points.txt
2023-09-06T08:07:45,208   writing requirements to cryodrgn.egg-info/requires.txt
2023-09-06T08:07:45,211   writing top-level names to cryodrgn.egg-info/top_level.txt
2023-09-06T08:07:45,298   /tmp/pip-build-env-2puo0sdl/overlay/lib/python3.7/site-packages/setuptools/config/pyprojecttoml.py:66: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-09-06T08:07:45,299     config = read_configuration(filepath, True, ignore_option_errors, dist)
2023-09-06T08:07:45,299   listing git files failed - pretending there aren't any
2023-09-06T08:07:45,317   reading manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-09-06T08:07:45,380   reading manifest template 'MANIFEST.in'
2023-09-06T08:07:45,385   adding license file 'LICENSE.txt'
2023-09-06T08:07:45,418   writing manifest file 'cryodrgn.egg-info/SOURCES.txt'
2023-09-06T08:07:45,446   copying cryodrgn/healpy_grid.json -> build/lib/cryodrgn
2023-09-06T08:07:45,867   creating build/lib/cryodrgn/templates
2023-09-06T08:07:45,869   copying cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/lib/cryodrgn/templates
2023-09-06T08:07:45,875   copying cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/lib/cryodrgn/templates
2023-09-06T08:07:45,880   copying cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/lib/cryodrgn/templates
2023-09-06T08:07:45,886   copying cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/lib/cryodrgn/templates
2023-09-06T08:07:45,892   copying cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/lib/cryodrgn/templates
2023-09-06T08:07:45,940   installing to build/bdist.linux-armv7l/wheel
2023-09-06T08:07:45,941   running install
2023-09-06T08:07:46,003   running install_lib
2023-09-06T08:07:46,018   creating build/bdist.linux-armv7l
2023-09-06T08:07:46,018   creating build/bdist.linux-armv7l/wheel
2023-09-06T08:07:46,022   creating build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,024   copying build/lib/cryodrgn/shift_grid3.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,029   creating build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-09-06T08:07:46,031   copying build/lib/cryodrgn/templates/cryoDRGN_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-09-06T08:07:46,037   copying build/lib/cryodrgn/templates/cryoDRGN_filtering_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-09-06T08:07:46,042   copying build/lib/cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-09-06T08:07:46,047   copying build/lib/cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-09-06T08:07:46,052   copying build/lib/cryodrgn/templates/cryoDRGN_figures_template.ipynb -> build/bdist.linux-armv7l/wheel/cryodrgn/templates
2023-09-06T08:07:46,057   copying build/lib/cryodrgn/source.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,062   copying build/lib/cryodrgn/lie_tools.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,066   copying build/lib/cryodrgn/_version.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,070   copying build/lib/cryodrgn/ctf.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,074   copying build/lib/cryodrgn/losses.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,077   copying build/lib/cryodrgn/beta_schedule.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,081   copying build/lib/cryodrgn/models.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,087   copying build/lib/cryodrgn/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,090   copying build/lib/cryodrgn/__main__.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,095   copying build/lib/cryodrgn/lattice.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,099   copying build/lib/cryodrgn/analysis.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,105   copying build/lib/cryodrgn/healpy_grid.json -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,634   copying build/lib/cryodrgn/mrc.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,639   copying build/lib/cryodrgn/dataset.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,645   copying build/lib/cryodrgn/make_healpy.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,649   copying build/lib/cryodrgn/config.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,652   copying build/lib/cryodrgn/starfile.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,657   copying build/lib/cryodrgn/utils_exec.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,662   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,665   copying build/lib/cryodrgn/commands_utils/write_cs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,669   copying build/lib/cryodrgn/commands_utils/flip_hand.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,674   copying build/lib/cryodrgn/commands_utils/concat_pkls.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,679   copying build/lib/cryodrgn/commands_utils/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,683   copying build/lib/cryodrgn/commands_utils/add_psize.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,687   copying build/lib/cryodrgn/commands_utils/write_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,692   copying build/lib/cryodrgn/commands_utils/view_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,695   copying build/lib/cryodrgn/commands_utils/filter_pkl.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,699   copying build/lib/cryodrgn/commands_utils/filter_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,702   copying build/lib/cryodrgn/commands_utils/view_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,706   copying build/lib/cryodrgn/commands_utils/select_clusters.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,710   copying build/lib/cryodrgn/commands_utils/invert_contrast.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,713   copying build/lib/cryodrgn/commands_utils/view_cs_header.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,717   copying build/lib/cryodrgn/commands_utils/phase_flip.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,720   copying build/lib/cryodrgn/commands_utils/select_random.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,724   copying build/lib/cryodrgn/commands_utils/filter_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,728   copying build/lib/cryodrgn/commands_utils/translate_mrcs.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands_utils
2023-09-06T08:07:46,731   copying build/lib/cryodrgn/shift_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,735   copying build/lib/cryodrgn/utils.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,739   copying build/lib/cryodrgn/so3_grid.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,743   copying build/lib/cryodrgn/pose.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,748   copying build/lib/cryodrgn/pose_search.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,753   copying build/lib/cryodrgn/fft.py -> build/bdist.linux-armv7l/wheel/cryodrgn
2023-09-06T08:07:46,759   creating build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,761   copying build/lib/cryodrgn/commands/parse_ctf_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,765   copying build/lib/cryodrgn/commands/eval_images.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,769   copying build/lib/cryodrgn/commands/parse_ctf_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,773   copying build/lib/cryodrgn/commands/train_nn.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,778   copying build/lib/cryodrgn/commands/pc_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,782   copying build/lib/cryodrgn/commands/parse_pose_csparc.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,786   copying build/lib/cryodrgn/commands/abinit_het.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,792   copying build/lib/cryodrgn/commands/backproject_voxel.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,796   copying build/lib/cryodrgn/commands/analyze_landscape.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,801   copying build/lib/cryodrgn/commands/__init__.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,804   copying build/lib/cryodrgn/commands/direct_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,808   copying build/lib/cryodrgn/commands/downsample.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,812   copying build/lib/cryodrgn/commands/graph_traversal.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,816   copying build/lib/cryodrgn/commands/abinit_homo.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,821   copying build/lib/cryodrgn/commands/eval_vol.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,826   copying build/lib/cryodrgn/commands/view_config.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,829   copying build/lib/cryodrgn/commands/preprocess.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,833   copying build/lib/cryodrgn/commands/analyze.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,838   copying build/lib/cryodrgn/commands/train_vae.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,844   copying build/lib/cryodrgn/commands/parse_pose_star.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,848   copying build/lib/cryodrgn/commands/analyze_landscape_full.py -> build/bdist.linux-armv7l/wheel/cryodrgn/commands
2023-09-06T08:07:46,852   running install_egg_info
2023-09-06T08:07:46,866   Copying cryodrgn.egg-info to build/bdist.linux-armv7l/wheel/cryodrgn-3.0.0b0-py3.7.egg-info
2023-09-06T08:07:46,896   running install_scripts
2023-09-06T08:07:46,960   creating build/bdist.linux-armv7l/wheel/cryodrgn-3.0.0b0.dist-info/WHEEL
2023-09-06T08:07:46,966   creating '/tmp/pip-wheel-i1cwea13/.tmp-g65p5707/cryodrgn-3.0.0b0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-06T08:07:46,972   adding 'cryodrgn/__init__.py'
2023-09-06T08:07:46,975   adding 'cryodrgn/__main__.py'
2023-09-06T08:07:46,978   adding 'cryodrgn/_version.py'
2023-09-06T08:07:46,984   adding 'cryodrgn/analysis.py'
2023-09-06T08:07:46,987   adding 'cryodrgn/beta_schedule.py'
2023-09-06T08:07:46,990   adding 'cryodrgn/config.py'
2023-09-06T08:07:46,993   adding 'cryodrgn/ctf.py'
2023-09-06T08:07:47,000   adding 'cryodrgn/dataset.py'
2023-09-06T08:07:47,003   adding 'cryodrgn/fft.py'
2023-09-06T08:07:48,940   adding 'cryodrgn/healpy_grid.json'
2023-09-06T08:07:49,149   adding 'cryodrgn/lattice.py'
2023-09-06T08:07:49,153   adding 'cryodrgn/lie_tools.py'
2023-09-06T08:07:49,156   adding 'cryodrgn/losses.py'
2023-09-06T08:07:49,158   adding 'cryodrgn/make_healpy.py'
2023-09-06T08:07:49,168   adding 'cryodrgn/models.py'
2023-09-06T08:07:49,173   adding 'cryodrgn/mrc.py'
2023-09-06T08:07:49,176   adding 'cryodrgn/pose.py'
2023-09-06T08:07:49,182   adding 'cryodrgn/pose_search.py'
2023-09-06T08:07:49,185   adding 'cryodrgn/shift_grid.py'
2023-09-06T08:07:49,187   adding 'cryodrgn/shift_grid3.py'
2023-09-06T08:07:49,190   adding 'cryodrgn/so3_grid.py'
2023-09-06T08:07:49,196   adding 'cryodrgn/source.py'
2023-09-06T08:07:49,199   adding 'cryodrgn/starfile.py'
2023-09-06T08:07:49,203   adding 'cryodrgn/utils.py'
2023-09-06T08:07:49,206   adding 'cryodrgn/utils_exec.py'
2023-09-06T08:07:49,210   adding 'cryodrgn/commands/__init__.py'
2023-09-06T08:07:49,219   adding 'cryodrgn/commands/abinit_het.py'
2023-09-06T08:07:49,226   adding 'cryodrgn/commands/abinit_homo.py'
2023-09-06T08:07:49,231   adding 'cryodrgn/commands/analyze.py'
2023-09-06T08:07:49,237   adding 'cryodrgn/commands/analyze_landscape.py'
2023-09-06T08:07:49,241   adding 'cryodrgn/commands/analyze_landscape_full.py'
2023-09-06T08:07:49,246   adding 'cryodrgn/commands/backproject_voxel.py'
2023-09-06T08:07:49,248   adding 'cryodrgn/commands/direct_traversal.py'
2023-09-06T08:07:49,252   adding 'cryodrgn/commands/downsample.py'
2023-09-06T08:07:49,256   adding 'cryodrgn/commands/eval_images.py'
2023-09-06T08:07:49,260   adding 'cryodrgn/commands/eval_vol.py'
2023-09-06T08:07:49,263   adding 'cryodrgn/commands/graph_traversal.py'
2023-09-06T08:07:49,267   adding 'cryodrgn/commands/parse_ctf_csparc.py'
2023-09-06T08:07:49,270   adding 'cryodrgn/commands/parse_ctf_star.py'
2023-09-06T08:07:49,272   adding 'cryodrgn/commands/parse_pose_csparc.py'
2023-09-06T08:07:49,275   adding 'cryodrgn/commands/parse_pose_star.py'
2023-09-06T08:07:49,278   adding 'cryodrgn/commands/pc_traversal.py'
2023-09-06T08:07:49,282   adding 'cryodrgn/commands/preprocess.py'
2023-09-06T08:07:49,287   adding 'cryodrgn/commands/train_nn.py'
2023-09-06T08:07:49,297   adding 'cryodrgn/commands/train_vae.py'
2023-09-06T08:07:49,300   adding 'cryodrgn/commands/view_config.py'
2023-09-06T08:07:49,303   adding 'cryodrgn/commands_utils/__init__.py'
2023-09-06T08:07:49,306   adding 'cryodrgn/commands_utils/add_psize.py'
2023-09-06T08:07:49,309   adding 'cryodrgn/commands_utils/concat_pkls.py'
2023-09-06T08:07:49,311   adding 'cryodrgn/commands_utils/filter_mrcs.py'
2023-09-06T08:07:49,314   adding 'cryodrgn/commands_utils/filter_pkl.py'
2023-09-06T08:07:49,316   adding 'cryodrgn/commands_utils/filter_star.py'
2023-09-06T08:07:49,319   adding 'cryodrgn/commands_utils/flip_hand.py'
2023-09-06T08:07:49,321   adding 'cryodrgn/commands_utils/invert_contrast.py'
2023-09-06T08:07:49,324   adding 'cryodrgn/commands_utils/phase_flip.py'
2023-09-06T08:07:49,326   adding 'cryodrgn/commands_utils/select_clusters.py'
2023-09-06T08:07:49,329   adding 'cryodrgn/commands_utils/select_random.py'
2023-09-06T08:07:49,332   adding 'cryodrgn/commands_utils/translate_mrcs.py'
2023-09-06T08:07:49,334   adding 'cryodrgn/commands_utils/view_cs_header.py'
2023-09-06T08:07:49,337   adding 'cryodrgn/commands_utils/view_header.py'
2023-09-06T08:07:49,340   adding 'cryodrgn/commands_utils/view_mrcs.py'
2023-09-06T08:07:49,343   adding 'cryodrgn/commands_utils/write_cs.py'
2023-09-06T08:07:49,346   adding 'cryodrgn/commands_utils/write_star.py'
2023-09-06T08:07:49,352   adding 'cryodrgn/templates/cryoDRGN_ET_viz_template.ipynb'
2023-09-06T08:07:49,356   adding 'cryodrgn/templates/cryoDRGN_analyze_landscape_template.ipynb'
2023-09-06T08:07:49,360   adding 'cryodrgn/templates/cryoDRGN_figures_template.ipynb'
2023-09-06T08:07:49,366   adding 'cryodrgn/templates/cryoDRGN_filtering_template.ipynb'
2023-09-06T08:07:49,372   adding 'cryodrgn/templates/cryoDRGN_viz_template.ipynb'
2023-09-06T08:07:49,389   adding 'cryodrgn-3.0.0b0.dist-info/LICENSE.txt'
2023-09-06T08:07:49,400   adding 'cryodrgn-3.0.0b0.dist-info/METADATA'
2023-09-06T08:07:49,402   adding 'cryodrgn-3.0.0b0.dist-info/WHEEL'
2023-09-06T08:07:49,404   adding 'cryodrgn-3.0.0b0.dist-info/entry_points.txt'
2023-09-06T08:07:49,406   adding 'cryodrgn-3.0.0b0.dist-info/top_level.txt'
2023-09-06T08:07:49,410   adding 'cryodrgn-3.0.0b0.dist-info/RECORD'
2023-09-06T08:07:49,452   removing build/bdist.linux-armv7l/wheel
2023-09-06T08:07:49,708   Building wheel for cryodrgn (pyproject.toml): finished with status 'done'
2023-09-06T08:07:49,803   Created wheel for cryodrgn: filename=cryodrgn-3.0.0b0-py3-none-any.whl size=1143385 sha256=498fba8644092d42d124e88b81d7209e358d25ea05720b664bd44c454eb221a2
2023-09-06T08:07:49,805   Stored in directory: /tmp/pip-ephem-wheel-cache-zp9lwvnj/wheels/d6/01/fc/85c25aa6f4a7c483b2d33314864a6046333758413e4ca996d0
2023-09-06T08:07:49,848 Successfully built cryodrgn
2023-09-06T08:07:49,942 Removed build tracker: '/tmp/pip-build-tracker-6v957vk9'