2023-09-07T10:23:46,484 Created temporary directory: /tmp/pip-build-tracker-0_6yksae
2023-09-07T10:23:46,486 Initialized build tracking at /tmp/pip-build-tracker-0_6yksae
2023-09-07T10:23:46,486 Created build tracker: /tmp/pip-build-tracker-0_6yksae
2023-09-07T10:23:46,486 Entered build tracker: /tmp/pip-build-tracker-0_6yksae
2023-09-07T10:23:46,486 Created temporary directory: /tmp/pip-wheel-qrtl6ebf
2023-09-07T10:23:46,490 Created temporary directory: /tmp/pip-ephem-wheel-cache-l9_ivcr8
2023-09-07T10:23:46,514 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-07T10:23:46,518 2 location(s) to search for versions of biobb-gromacs:
2023-09-07T10:23:46,518 * https://pypi.org/simple/biobb-gromacs/
2023-09-07T10:23:46,518 * https://www.piwheels.org/simple/biobb-gromacs/
2023-09-07T10:23:46,519 Fetching project page and analyzing links: https://pypi.org/simple/biobb-gromacs/
2023-09-07T10:23:46,519 Getting page https://pypi.org/simple/biobb-gromacs/
2023-09-07T10:23:46,521 Found index url https://pypi.org/simple/
2023-09-07T10:23:46,571 Fetched page https://pypi.org/simple/biobb-gromacs/ as application/vnd.pypi.simple.v1+json
2023-09-07T10:23:46,573   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/86/a0/f92aeb96c32f5abc4e8642e95ab8248f3105dfde5dd0e89435ae70448607/biobb_gromacs-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2023-09-07T10:23:46,574   Found link https://files.pythonhosted.org/packages/2a/4b/be17e7b27a96404d0f87426fbabd98dde1c97a7b8a1c54d041066c23ccf4/biobb_gromacs-3.8.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.0
2023-09-07T10:23:46,574   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/2e/0e/747bdb6621a1a44e3f02427166092650a9a68398395ca67f2937b15d7f41/biobb_gromacs-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2023-09-07T10:23:46,575   Found link https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.1
2023-09-07T10:23:46,575   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/05/a4/d455ddd59bf78a5737d5d259f73dfd02c519a3e283039a8e017a09f1cfa0/biobb_gromacs-3.9.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10)
2023-09-07T10:23:46,576   Found link https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10), version: 3.9.0
2023-09-07T10:23:46,576   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/21/48/4004837530aeaa5b0355627b3d5bde2d1ecaec3f03e10c6251df81d26543/biobb_gromacs-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10)
2023-09-07T10:23:46,577   Found link https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10), version: 4.0.0
2023-09-07T10:23:46,577   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/7c/12/2f616a3f4236c15346886c35c7001f657ac2dcf00cd0787d3660abaf91fe/biobb_gromacs-4.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8)
2023-09-07T10:23:46,577   Found link https://files.pythonhosted.org/packages/a1/8e/a64eb1d1994ab01a2c561aa9b4c10aecbcbee823304e8fb9e8dc91ed0d68/biobb_gromacs-4.1.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8), version: 4.1.0
2023-09-07T10:23:46,578 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-gromacs/
2023-09-07T10:23:46,578 Getting page https://www.piwheels.org/simple/biobb-gromacs/
2023-09-07T10:23:46,579 Found index url https://www.piwheels.org/simple/
2023-09-07T10:23:46,759 Fetched page https://www.piwheels.org/simple/biobb-gromacs/ as text/html
2023-09-07T10:23:46,761   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-4.0.0-py3-none-any.whl#sha256=00be99495c4d1a3f70e885bd0cb38842008213f1dfc171b1fbfa7d151023622b (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10)
2023-09-07T10:23:46,762   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.9.0-py3-none-any.whl#sha256=e1c466d044d7e03844c9ce91c981d715f42706f993e4307cd4a2c3fefe057200 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10)
2023-09-07T10:23:46,762   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.1-py3-none-any.whl#sha256=dc62def4ee04dacfa7a29ad52d42e1fa4c563b5ce844e1ae8f55221271bf2382 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2023-09-07T10:23:46,762   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.0-py3-none-any.whl#sha256=7add16113788a2a933020f11c3ee9750cca1751c59ff4805bf3cc10ad2088928 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2023-09-07T10:23:46,762 Skipping link: not a file: https://www.piwheels.org/simple/biobb-gromacs/
2023-09-07T10:23:46,762 Skipping link: not a file: https://pypi.org/simple/biobb-gromacs/
2023-09-07T10:23:46,780 Given no hashes to check 1 links for project 'biobb-gromacs': discarding no candidates
2023-09-07T10:23:46,797 Collecting biobb-gromacs==4.1.0
2023-09-07T10:23:46,801   Created temporary directory: /tmp/pip-unpack-w51hpa22
2023-09-07T10:23:46,920   Downloading biobb_gromacs-4.1.0.tar.gz (28 kB)
2023-09-07T10:23:47,005   Added biobb-gromacs==4.1.0 from https://files.pythonhosted.org/packages/a1/8e/a64eb1d1994ab01a2c561aa9b4c10aecbcbee823304e8fb9e8dc91ed0d68/biobb_gromacs-4.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-0_6yksae'
2023-09-07T10:23:47,008   Running setup.py (path:/tmp/pip-wheel-qrtl6ebf/biobb-gromacs_cb28af4ee4d14c1a8ab3293922e694c3/setup.py) egg_info for package biobb-gromacs
2023-09-07T10:23:47,009   Created temporary directory: /tmp/pip-pip-egg-info-o2h9j6h9
2023-09-07T10:23:47,009   Preparing metadata (setup.py): started
2023-09-07T10:23:47,011   Running command python setup.py egg_info
2023-09-07T10:23:47,651   running egg_info
2023-09-07T10:23:47,653   creating /tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info
2023-09-07T10:23:47,681   writing /tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info/PKG-INFO
2023-09-07T10:23:47,684   writing dependency_links to /tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info/dependency_links.txt
2023-09-07T10:23:47,686   writing entry points to /tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info/entry_points.txt
2023-09-07T10:23:47,688   writing requirements to /tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info/requires.txt
2023-09-07T10:23:47,689   writing top-level names to /tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info/top_level.txt
2023-09-07T10:23:47,690   writing manifest file '/tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info/SOURCES.txt'
2023-09-07T10:23:47,777   reading manifest file '/tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info/SOURCES.txt'
2023-09-07T10:23:47,778   adding license file 'LICENSE'
2023-09-07T10:23:47,781   writing manifest file '/tmp/pip-pip-egg-info-o2h9j6h9/biobb_gromacs.egg-info/SOURCES.txt'
2023-09-07T10:23:47,840   Preparing metadata (setup.py): finished with status 'done'
2023-09-07T10:23:47,846   Source in /tmp/pip-wheel-qrtl6ebf/biobb-gromacs_cb28af4ee4d14c1a8ab3293922e694c3 has version 4.1.0, which satisfies requirement biobb-gromacs==4.1.0 from https://files.pythonhosted.org/packages/a1/8e/a64eb1d1994ab01a2c561aa9b4c10aecbcbee823304e8fb9e8dc91ed0d68/biobb_gromacs-4.1.0.tar.gz
2023-09-07T10:23:47,847   Removed biobb-gromacs==4.1.0 from https://files.pythonhosted.org/packages/a1/8e/a64eb1d1994ab01a2c561aa9b4c10aecbcbee823304e8fb9e8dc91ed0d68/biobb_gromacs-4.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-0_6yksae'
2023-09-07T10:23:47,854 Created temporary directory: /tmp/pip-unpack-x3r1nr1c
2023-09-07T10:23:47,854 Building wheels for collected packages: biobb-gromacs
2023-09-07T10:23:47,859   Created temporary directory: /tmp/pip-wheel-olfinh99
2023-09-07T10:23:47,859   Building wheel for biobb-gromacs (setup.py): started
2023-09-07T10:23:47,860   Destination directory: /tmp/pip-wheel-olfinh99
2023-09-07T10:23:47,860   Running command python setup.py bdist_wheel
2023-09-07T10:23:48,495   running bdist_wheel
2023-09-07T10:23:48,783   running build
2023-09-07T10:23:48,783   running build_py
2023-09-07T10:23:48,812   creating build
2023-09-07T10:23:48,813   creating build/lib
2023-09-07T10:23:48,813   creating build/lib/biobb_gromacs
2023-09-07T10:23:48,815   copying biobb_gromacs/__init__.py -> build/lib/biobb_gromacs
2023-09-07T10:23:48,817   creating build/lib/biobb_gromacs/test
2023-09-07T10:23:48,818   copying biobb_gromacs/test/__init__.py -> build/lib/biobb_gromacs/test
2023-09-07T10:23:48,819   creating build/lib/biobb_gromacs/gromacs_extra
2023-09-07T10:23:48,820   copying biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/lib/biobb_gromacs/gromacs_extra
2023-09-07T10:23:48,822   copying biobb_gromacs/gromacs_extra/__init__.py -> build/lib/biobb_gromacs/gromacs_extra
2023-09-07T10:23:48,824   copying biobb_gromacs/gromacs_extra/append_ligand.py -> build/lib/biobb_gromacs/gromacs_extra
2023-09-07T10:23:48,827   creating build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,828   copying biobb_gromacs/gromacs/grompp_mdrun.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,830   copying biobb_gromacs/gromacs/trjcat.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,832   copying biobb_gromacs/gromacs/gmxselect.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,834   copying biobb_gromacs/gromacs/solvate.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,836   copying biobb_gromacs/gromacs/common.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,838   copying biobb_gromacs/gromacs/make_ndx.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,840   copying biobb_gromacs/gromacs/grompp.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,842   copying biobb_gromacs/gromacs/pdb2gmx.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,844   copying biobb_gromacs/gromacs/__init__.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,846   copying biobb_gromacs/gromacs/editconf.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,848   copying biobb_gromacs/gromacs/mdrun.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,850   copying biobb_gromacs/gromacs/genion.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,852   copying biobb_gromacs/gromacs/genrestr.py -> build/lib/biobb_gromacs/gromacs
2023-09-07T10:23:48,887   /home/piwheels/.local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-07T10:23:48,888   !!

2023-09-07T10:23:48,888           ********************************************************************************
2023-09-07T10:23:48,888           Please avoid running ``setup.py`` directly.
2023-09-07T10:23:48,888           Instead, use pypa/build, pypa/installer, pypa/build or
2023-09-07T10:23:48,888           other standards-based tools.

2023-09-07T10:23:48,889           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-07T10:23:48,889           ********************************************************************************

2023-09-07T10:23:48,889   !!
2023-09-07T10:23:48,889     self.initialize_options()
2023-09-07T10:23:48,916   installing to build/bdist.linux-armv7l/wheel
2023-09-07T10:23:48,916   running install
2023-09-07T10:23:48,941   running install_lib
2023-09-07T10:23:48,970   creating build/bdist.linux-armv7l
2023-09-07T10:23:48,970   creating build/bdist.linux-armv7l/wheel
2023-09-07T10:23:48,972   creating build/bdist.linux-armv7l/wheel/biobb_gromacs
2023-09-07T10:23:48,974   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/test
2023-09-07T10:23:48,975   copying build/lib/biobb_gromacs/test/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/test
2023-09-07T10:23:48,977   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2023-09-07T10:23:48,978   copying build/lib/biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2023-09-07T10:23:48,981   copying build/lib/biobb_gromacs/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2023-09-07T10:23:48,982   copying build/lib/biobb_gromacs/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2023-09-07T10:23:48,985   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:48,986   copying build/lib/biobb_gromacs/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:48,989   copying build/lib/biobb_gromacs/gromacs/trjcat.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:48,991   copying build/lib/biobb_gromacs/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:48,994   copying build/lib/biobb_gromacs/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:48,996   copying build/lib/biobb_gromacs/gromacs/common.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:48,998   copying build/lib/biobb_gromacs/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:49,000   copying build/lib/biobb_gromacs/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:49,003   copying build/lib/biobb_gromacs/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:49,005   copying build/lib/biobb_gromacs/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:49,007   copying build/lib/biobb_gromacs/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:49,009   copying build/lib/biobb_gromacs/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:49,012   copying build/lib/biobb_gromacs/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:49,014   copying build/lib/biobb_gromacs/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2023-09-07T10:23:49,016   copying build/lib/biobb_gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs
2023-09-07T10:23:49,018   running install_egg_info
2023-09-07T10:23:49,088   running egg_info
2023-09-07T10:23:49,115   writing biobb_gromacs.egg-info/PKG-INFO
2023-09-07T10:23:49,118   writing dependency_links to biobb_gromacs.egg-info/dependency_links.txt
2023-09-07T10:23:49,120   writing entry points to biobb_gromacs.egg-info/entry_points.txt
2023-09-07T10:23:49,122   writing requirements to biobb_gromacs.egg-info/requires.txt
2023-09-07T10:23:49,123   writing top-level names to biobb_gromacs.egg-info/top_level.txt
2023-09-07T10:23:49,154   reading manifest file 'biobb_gromacs.egg-info/SOURCES.txt'
2023-09-07T10:23:49,156   adding license file 'LICENSE'
2023-09-07T10:23:49,159   writing manifest file 'biobb_gromacs.egg-info/SOURCES.txt'
2023-09-07T10:23:49,160   Copying biobb_gromacs.egg-info to build/bdist.linux-armv7l/wheel/biobb_gromacs-4.1.0-py3.9.egg-info
2023-09-07T10:23:49,173   running install_scripts
2023-09-07T10:23:49,190   creating build/bdist.linux-armv7l/wheel/biobb_gromacs-4.1.0.dist-info/WHEEL
2023-09-07T10:23:49,193   creating '/tmp/pip-wheel-olfinh99/biobb_gromacs-4.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-09-07T10:23:49,195   adding 'biobb_gromacs/__init__.py'
2023-09-07T10:23:49,197   adding 'biobb_gromacs/gromacs/__init__.py'
2023-09-07T10:23:49,198   adding 'biobb_gromacs/gromacs/common.py'
2023-09-07T10:23:49,200   adding 'biobb_gromacs/gromacs/editconf.py'
2023-09-07T10:23:49,202   adding 'biobb_gromacs/gromacs/genion.py'
2023-09-07T10:23:49,204   adding 'biobb_gromacs/gromacs/genrestr.py'
2023-09-07T10:23:49,206   adding 'biobb_gromacs/gromacs/gmxselect.py'
2023-09-07T10:23:49,208   adding 'biobb_gromacs/gromacs/grompp.py'
2023-09-07T10:23:49,211   adding 'biobb_gromacs/gromacs/grompp_mdrun.py'
2023-09-07T10:23:49,212   adding 'biobb_gromacs/gromacs/make_ndx.py'
2023-09-07T10:23:49,215   adding 'biobb_gromacs/gromacs/mdrun.py'
2023-09-07T10:23:49,217   adding 'biobb_gromacs/gromacs/pdb2gmx.py'
2023-09-07T10:23:49,219   adding 'biobb_gromacs/gromacs/solvate.py'
2023-09-07T10:23:49,221   adding 'biobb_gromacs/gromacs/trjcat.py'
2023-09-07T10:23:49,223   adding 'biobb_gromacs/gromacs_extra/__init__.py'
2023-09-07T10:23:49,224   adding 'biobb_gromacs/gromacs_extra/append_ligand.py'
2023-09-07T10:23:49,226   adding 'biobb_gromacs/gromacs_extra/ndx2resttop.py'
2023-09-07T10:23:49,228   adding 'biobb_gromacs/test/__init__.py'
2023-09-07T10:23:49,231   adding 'biobb_gromacs-4.1.0.dist-info/LICENSE'
2023-09-07T10:23:49,233   adding 'biobb_gromacs-4.1.0.dist-info/METADATA'
2023-09-07T10:23:49,234   adding 'biobb_gromacs-4.1.0.dist-info/WHEEL'
2023-09-07T10:23:49,235   adding 'biobb_gromacs-4.1.0.dist-info/entry_points.txt'
2023-09-07T10:23:49,235   adding 'biobb_gromacs-4.1.0.dist-info/top_level.txt'
2023-09-07T10:23:49,236   adding 'biobb_gromacs-4.1.0.dist-info/RECORD'
2023-09-07T10:23:49,239   removing build/bdist.linux-armv7l/wheel
2023-09-07T10:23:49,327   Building wheel for biobb-gromacs (setup.py): finished with status 'done'
2023-09-07T10:23:49,331   Created wheel for biobb-gromacs: filename=biobb_gromacs-4.1.0-py3-none-any.whl size=53561 sha256=d564543e13ad745f780c6cf0d622b4fd306acfa5ff43ca2c3a7c673d548995ce
2023-09-07T10:23:49,332   Stored in directory: /tmp/pip-ephem-wheel-cache-l9_ivcr8/wheels/e6/77/de/c68544691e198be4054395da8cc0a3c4a48d11f09b7c249606
2023-09-07T10:23:49,345 Successfully built biobb-gromacs
2023-09-07T10:23:49,350 Removed build tracker: '/tmp/pip-build-tracker-0_6yksae'