2023-09-08T14:32:00,518 Created temporary directory: /tmp/pip-build-tracker-zwsjxtqa
2023-09-08T14:32:00,519 Initialized build tracking at /tmp/pip-build-tracker-zwsjxtqa
2023-09-08T14:32:00,520 Created build tracker: /tmp/pip-build-tracker-zwsjxtqa
2023-09-08T14:32:00,520 Entered build tracker: /tmp/pip-build-tracker-zwsjxtqa
2023-09-08T14:32:00,521 Created temporary directory: /tmp/pip-wheel-qxl3j_yr
2023-09-08T14:32:00,524 Created temporary directory: /tmp/pip-ephem-wheel-cache-rlkf38g8
2023-09-08T14:32:00,547 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T14:32:00,551 2 location(s) to search for versions of pyrmsd:
2023-09-08T14:32:00,551 * https://pypi.org/simple/pyrmsd/
2023-09-08T14:32:00,551 * https://www.piwheels.org/simple/pyrmsd/
2023-09-08T14:32:00,552 Fetching project page and analyzing links: https://pypi.org/simple/pyrmsd/
2023-09-08T14:32:00,552 Getting page https://pypi.org/simple/pyrmsd/
2023-09-08T14:32:00,554 Found index url https://pypi.org/simple/
2023-09-08T14:32:00,772 Fetched page https://pypi.org/simple/pyrmsd/ as application/vnd.pypi.simple.v1+json
2023-09-08T14:32:00,773   Found link https://files.pythonhosted.org/packages/80/b5/1fd41c73d58d030d036ba78ed3a9291b1916e3975c071c521576715a41c8/pyRMSD-4.0.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.0.0
2023-09-08T14:32:00,774   Found link https://files.pythonhosted.org/packages/f3/30/bf5cc08908f79127fecd306e126be5984ccb30be76bcdb62a39c582975aa/pyRMSD-4.0.1.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.0.1
2023-09-08T14:32:00,775   Found link https://files.pythonhosted.org/packages/45/7e/ac00abc640a76116139741b73c6eadd1cae264bb324f62acdb43f7806847/pyRMSD-4.1.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.1.0
2023-09-08T14:32:00,775   Found link https://files.pythonhosted.org/packages/fb/17/cb4a46781fa84b8d974c1da54ace55674a1182c7bccd87047a8404971e41/pyRMSD-4.2.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.2.0
2023-09-08T14:32:00,776   Found link https://files.pythonhosted.org/packages/21/18/170ed35c7aaaae5bbb522b3c9a6bb1a7f4fd978702ea64e188975c2017aa/pyRMSD-4.2.1.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.2.1
2023-09-08T14:32:00,777 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyrmsd/
2023-09-08T14:32:00,777 Getting page https://www.piwheels.org/simple/pyrmsd/
2023-09-08T14:32:00,779 Found index url https://www.piwheels.org/simple/
2023-09-08T14:32:01,040 Fetched page https://www.piwheels.org/simple/pyrmsd/ as text/html
2023-09-08T14:32:01,042 Skipping link: not a file: https://www.piwheels.org/simple/pyrmsd/
2023-09-08T14:32:01,042 Skipping link: not a file: https://pypi.org/simple/pyrmsd/
2023-09-08T14:32:01,061 Given no hashes to check 1 links for project 'pyrmsd': discarding no candidates
2023-09-08T14:32:01,079 Collecting pyrmsd==4.0.0
2023-09-08T14:32:01,081   Created temporary directory: /tmp/pip-unpack-8e6wb7xq
2023-09-08T14:32:01,706   Downloading pyRMSD-4.0.0.tar.gz (53 kB)
2023-09-08T14:32:01,871   Added pyrmsd==4.0.0 from https://files.pythonhosted.org/packages/80/b5/1fd41c73d58d030d036ba78ed3a9291b1916e3975c071c521576715a41c8/pyRMSD-4.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-zwsjxtqa'
2023-09-08T14:32:01,873   Running setup.py (path:/tmp/pip-wheel-qxl3j_yr/pyrmsd_7fd8ab3816cc45b099c8d3f006ac2380/setup.py) egg_info for package pyrmsd
2023-09-08T14:32:01,874   Created temporary directory: /tmp/pip-pip-egg-info-fv4q1wvp
2023-09-08T14:32:01,874   Preparing metadata (setup.py): started
2023-09-08T14:32:01,876   Running command python setup.py egg_info
2023-09-08T14:32:02,292   Traceback (most recent call last):
2023-09-08T14:32:02,292     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-08T14:32:02,293       from . import multiarray
2023-09-08T14:32:02,293     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-08T14:32:02,294       from . import overrides
2023-09-08T14:32:02,294     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-08T14:32:02,295       from numpy.core._multiarray_umath import (
2023-09-08T14:32:02,296   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T14:32:02,298   During handling of the above exception, another exception occurred:

2023-09-08T14:32:02,299   Traceback (most recent call last):
2023-09-08T14:32:02,300     File "<string>", line 2, in <module>
2023-09-08T14:32:02,300     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-08T14:32:02,301     File "/tmp/pip-wheel-qxl3j_yr/pyrmsd_7fd8ab3816cc45b099c8d3f006ac2380/setup.py", line 7, in <module>
2023-09-08T14:32:02,302       import numpy
2023-09-08T14:32:02,302     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-08T14:32:02,303       from . import core
2023-09-08T14:32:02,304     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-08T14:32:02,304       raise ImportError(msg)
2023-09-08T14:32:02,305   ImportError:

2023-09-08T14:32:02,307   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-08T14:32:02,308   Importing the numpy C-extensions failed. This error can happen for
2023-09-08T14:32:02,309   many reasons, often due to issues with your setup or how NumPy was
2023-09-08T14:32:02,309   installed.

2023-09-08T14:32:02,311   We have compiled some common reasons and troubleshooting tips at:

2023-09-08T14:32:02,312       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-08T14:32:02,314   Please note and check the following:

2023-09-08T14:32:02,315     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-08T14:32:02,316     * The NumPy version is: "1.25.2"

2023-09-08T14:32:02,318   and make sure that they are the versions you expect.
2023-09-08T14:32:02,318   Please carefully study the documentation linked above for further help.

2023-09-08T14:32:02,320   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T14:32:02,370   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-08T14:32:02,383   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-08T14:32:02,383   exec(compile('"'"''"'"''"'"'
2023-09-08T14:32:02,383   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T14:32:02,383   #
2023-09-08T14:32:02,383   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T14:32:02,383   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T14:32:02,383   # - It provides a clear error message when setuptools is not installed.
2023-09-08T14:32:02,383   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T14:32:02,383   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T14:32:02,383   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T14:32:02,383   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T14:32:02,383   import os, sys, tokenize
2023-09-08T14:32:02,383   
2023-09-08T14:32:02,383   try:
2023-09-08T14:32:02,383       import setuptools
2023-09-08T14:32:02,383   except ImportError as error:
2023-09-08T14:32:02,383       print(
2023-09-08T14:32:02,383           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T14:32:02,383           "the build environment.",
2023-09-08T14:32:02,383           file=sys.stderr,
2023-09-08T14:32:02,383       )
2023-09-08T14:32:02,383       sys.exit(1)
2023-09-08T14:32:02,383   
2023-09-08T14:32:02,383   __file__ = %r
2023-09-08T14:32:02,383   sys.argv[0] = __file__
2023-09-08T14:32:02,383   
2023-09-08T14:32:02,383   if os.path.exists(__file__):
2023-09-08T14:32:02,383       filename = __file__
2023-09-08T14:32:02,383       with tokenize.open(__file__) as f:
2023-09-08T14:32:02,383           setup_py_code = f.read()
2023-09-08T14:32:02,383   else:
2023-09-08T14:32:02,383       filename = "<auto-generated setuptools caller>"
2023-09-08T14:32:02,383       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T14:32:02,383   
2023-09-08T14:32:02,383   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T14:32:02,383   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-qxl3j_yr/pyrmsd_7fd8ab3816cc45b099c8d3f006ac2380/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-fv4q1wvp[/]
2023-09-08T14:32:02,384   [bold magenta]cwd[/]: /tmp/pip-wheel-qxl3j_yr/pyrmsd_7fd8ab3816cc45b099c8d3f006ac2380/
2023-09-08T14:32:02,385   Preparing metadata (setup.py): finished with status 'error'
2023-09-08T14:32:02,386 ERROR: [present-rich] metadata generation failed
2023-09-08T14:32:02,391 Exception information:
2023-09-08T14:32:02,391 Traceback (most recent call last):
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-08T14:32:02,391     call_subprocess(
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-08T14:32:02,391     raise error
2023-09-08T14:32:02,391 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-08T14:32:02,391 
2023-09-08T14:32:02,391 The above exception was the direct cause of the following exception:
2023-09-08T14:32:02,391 
2023-09-08T14:32:02,391 Traceback (most recent call last):
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T14:32:02,391     status = run_func(*args)
2023-09-08T14:32:02,391              ^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T14:32:02,391     return func(self, options, args)
2023-09-08T14:32:02,391            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-08T14:32:02,391     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-08T14:32:02,391                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-08T14:32:02,391     result = self._result = resolver.resolve(
2023-09-08T14:32:02,391                             ^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-08T14:32:02,391     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-08T14:32:02,391             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-08T14:32:02,391     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-08T14:32:02,391     if not criterion.candidates:
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-08T14:32:02,391     return bool(self._sequence)
2023-09-08T14:32:02,391            ^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-08T14:32:02,391     return any(self)
2023-09-08T14:32:02,391            ^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-08T14:32:02,391     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-08T14:32:02,391            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-08T14:32:02,391     candidate = func()
2023-09-08T14:32:02,391                 ^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-08T14:32:02,391     self._link_candidate_cache[link] = LinkCandidate(
2023-09-08T14:32:02,391                                        ^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-08T14:32:02,391     super().__init__(
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-08T14:32:02,391     self.dist = self._prepare()
2023-09-08T14:32:02,391                 ^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-08T14:32:02,391     dist = self._prepare_distribution()
2023-09-08T14:32:02,391            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-08T14:32:02,391     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-08T14:32:02,391            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-08T14:32:02,391     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-08T14:32:02,391            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-08T14:32:02,391     dist = _get_prepared_distribution(
2023-09-08T14:32:02,391            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-08T14:32:02,391     abstract_dist.prepare_distribution_metadata(
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-08T14:32:02,391     self.req.prepare_metadata()
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-08T14:32:02,391     self.metadata_directory = generate_metadata_legacy(
2023-09-08T14:32:02,391                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T14:32:02,391   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-08T14:32:02,391     raise MetadataGenerationFailed(package_details=details) from error
2023-09-08T14:32:02,391 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-08T14:32:02,403 Removed pyrmsd==4.0.0 from https://files.pythonhosted.org/packages/80/b5/1fd41c73d58d030d036ba78ed3a9291b1916e3975c071c521576715a41c8/pyRMSD-4.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-zwsjxtqa'
2023-09-08T14:32:02,404 Removed build tracker: '/tmp/pip-build-tracker-zwsjxtqa'