2023-09-08T15:29:15,231 Created temporary directory: /tmp/pip-build-tracker-1nkcaso1
2023-09-08T15:29:15,232 Initialized build tracking at /tmp/pip-build-tracker-1nkcaso1
2023-09-08T15:29:15,233 Created build tracker: /tmp/pip-build-tracker-1nkcaso1
2023-09-08T15:29:15,233 Entered build tracker: /tmp/pip-build-tracker-1nkcaso1
2023-09-08T15:29:15,234 Created temporary directory: /tmp/pip-wheel-009zm2k8
2023-09-08T15:29:15,237 Created temporary directory: /tmp/pip-ephem-wheel-cache-9i5owfvr
2023-09-08T15:29:15,258 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T15:29:15,262 2 location(s) to search for versions of pyrmsd:
2023-09-08T15:29:15,262 * https://pypi.org/simple/pyrmsd/
2023-09-08T15:29:15,262 * https://www.piwheels.org/simple/pyrmsd/
2023-09-08T15:29:15,263 Fetching project page and analyzing links: https://pypi.org/simple/pyrmsd/
2023-09-08T15:29:15,263 Getting page https://pypi.org/simple/pyrmsd/
2023-09-08T15:29:15,265 Found index url https://pypi.org/simple/
2023-09-08T15:29:15,403 Fetched page https://pypi.org/simple/pyrmsd/ as application/vnd.pypi.simple.v1+json
2023-09-08T15:29:15,405   Found link https://files.pythonhosted.org/packages/80/b5/1fd41c73d58d030d036ba78ed3a9291b1916e3975c071c521576715a41c8/pyRMSD-4.0.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.0.0
2023-09-08T15:29:15,405   Found link https://files.pythonhosted.org/packages/f3/30/bf5cc08908f79127fecd306e126be5984ccb30be76bcdb62a39c582975aa/pyRMSD-4.0.1.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.0.1
2023-09-08T15:29:15,406   Found link https://files.pythonhosted.org/packages/45/7e/ac00abc640a76116139741b73c6eadd1cae264bb324f62acdb43f7806847/pyRMSD-4.1.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.1.0
2023-09-08T15:29:15,407   Found link https://files.pythonhosted.org/packages/fb/17/cb4a46781fa84b8d974c1da54ace55674a1182c7bccd87047a8404971e41/pyRMSD-4.2.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.2.0
2023-09-08T15:29:15,407   Found link https://files.pythonhosted.org/packages/21/18/170ed35c7aaaae5bbb522b3c9a6bb1a7f4fd978702ea64e188975c2017aa/pyRMSD-4.2.1.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.2.1
2023-09-08T15:29:15,408 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyrmsd/
2023-09-08T15:29:15,409 Getting page https://www.piwheels.org/simple/pyrmsd/
2023-09-08T15:29:15,410 Found index url https://www.piwheels.org/simple/
2023-09-08T15:29:16,025 Fetched page https://www.piwheels.org/simple/pyrmsd/ as text/html
2023-09-08T15:29:16,026 Skipping link: not a file: https://www.piwheels.org/simple/pyrmsd/
2023-09-08T15:29:16,027 Skipping link: not a file: https://pypi.org/simple/pyrmsd/
2023-09-08T15:29:16,045 Given no hashes to check 1 links for project 'pyrmsd': discarding no candidates
2023-09-08T15:29:16,063 Collecting pyrmsd==4.0.1
2023-09-08T15:29:16,066   Created temporary directory: /tmp/pip-unpack-lsabxzgy
2023-09-08T15:29:16,755   Downloading pyRMSD-4.0.1.tar.gz (53 kB)
2023-09-08T15:29:16,924   Added pyrmsd==4.0.1 from https://files.pythonhosted.org/packages/f3/30/bf5cc08908f79127fecd306e126be5984ccb30be76bcdb62a39c582975aa/pyRMSD-4.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-1nkcaso1'
2023-09-08T15:29:16,927   Running setup.py (path:/tmp/pip-wheel-009zm2k8/pyrmsd_4b2e0d7cf405430aa1a87c0a1b39d32e/setup.py) egg_info for package pyrmsd
2023-09-08T15:29:16,928   Created temporary directory: /tmp/pip-pip-egg-info-n4cgrqez
2023-09-08T15:29:16,929   Preparing metadata (setup.py): started
2023-09-08T15:29:16,931   Running command python setup.py egg_info
2023-09-08T15:29:17,397   Traceback (most recent call last):
2023-09-08T15:29:17,397     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-08T15:29:17,398       from . import multiarray
2023-09-08T15:29:17,399     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-08T15:29:17,399       from . import overrides
2023-09-08T15:29:17,400     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-08T15:29:17,401       from numpy.core._multiarray_umath import (
2023-09-08T15:29:17,402   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T15:29:17,403   During handling of the above exception, another exception occurred:

2023-09-08T15:29:17,405   Traceback (most recent call last):
2023-09-08T15:29:17,406     File "<string>", line 2, in <module>
2023-09-08T15:29:17,406     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-08T15:29:17,407     File "/tmp/pip-wheel-009zm2k8/pyrmsd_4b2e0d7cf405430aa1a87c0a1b39d32e/setup.py", line 7, in <module>
2023-09-08T15:29:17,408       import numpy
2023-09-08T15:29:17,408     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-08T15:29:17,409       from . import core
2023-09-08T15:29:17,410     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-08T15:29:17,410       raise ImportError(msg)
2023-09-08T15:29:17,411   ImportError:

2023-09-08T15:29:17,413   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-08T15:29:17,414   Importing the numpy C-extensions failed. This error can happen for
2023-09-08T15:29:17,415   many reasons, often due to issues with your setup or how NumPy was
2023-09-08T15:29:17,416   installed.

2023-09-08T15:29:17,417   We have compiled some common reasons and troubleshooting tips at:

2023-09-08T15:29:17,418       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-08T15:29:17,420   Please note and check the following:

2023-09-08T15:29:17,422     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-08T15:29:17,423     * The NumPy version is: "1.25.2"

2023-09-08T15:29:17,424   and make sure that they are the versions you expect.
2023-09-08T15:29:17,425   Please carefully study the documentation linked above for further help.

2023-09-08T15:29:17,427   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T15:29:17,476   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-08T15:29:17,489   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-08T15:29:17,489   exec(compile('"'"''"'"''"'"'
2023-09-08T15:29:17,489   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T15:29:17,489   #
2023-09-08T15:29:17,489   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T15:29:17,489   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T15:29:17,489   # - It provides a clear error message when setuptools is not installed.
2023-09-08T15:29:17,489   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T15:29:17,489   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T15:29:17,489   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T15:29:17,489   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T15:29:17,489   import os, sys, tokenize
2023-09-08T15:29:17,489   
2023-09-08T15:29:17,489   try:
2023-09-08T15:29:17,489       import setuptools
2023-09-08T15:29:17,489   except ImportError as error:
2023-09-08T15:29:17,489       print(
2023-09-08T15:29:17,489           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T15:29:17,489           "the build environment.",
2023-09-08T15:29:17,489           file=sys.stderr,
2023-09-08T15:29:17,489       )
2023-09-08T15:29:17,489       sys.exit(1)
2023-09-08T15:29:17,489   
2023-09-08T15:29:17,489   __file__ = %r
2023-09-08T15:29:17,489   sys.argv[0] = __file__
2023-09-08T15:29:17,489   
2023-09-08T15:29:17,489   if os.path.exists(__file__):
2023-09-08T15:29:17,489       filename = __file__
2023-09-08T15:29:17,489       with tokenize.open(__file__) as f:
2023-09-08T15:29:17,489           setup_py_code = f.read()
2023-09-08T15:29:17,489   else:
2023-09-08T15:29:17,489       filename = "<auto-generated setuptools caller>"
2023-09-08T15:29:17,489       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T15:29:17,489   
2023-09-08T15:29:17,489   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T15:29:17,489   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-009zm2k8/pyrmsd_4b2e0d7cf405430aa1a87c0a1b39d32e/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-n4cgrqez[/]
2023-09-08T15:29:17,490   [bold magenta]cwd[/]: /tmp/pip-wheel-009zm2k8/pyrmsd_4b2e0d7cf405430aa1a87c0a1b39d32e/
2023-09-08T15:29:17,491   Preparing metadata (setup.py): finished with status 'error'
2023-09-08T15:29:17,492 ERROR: [present-rich] metadata generation failed
2023-09-08T15:29:17,497 Exception information:
2023-09-08T15:29:17,497 Traceback (most recent call last):
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-08T15:29:17,497     call_subprocess(
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-08T15:29:17,497     raise error
2023-09-08T15:29:17,497 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-08T15:29:17,497 
2023-09-08T15:29:17,497 The above exception was the direct cause of the following exception:
2023-09-08T15:29:17,497 
2023-09-08T15:29:17,497 Traceback (most recent call last):
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T15:29:17,497     status = run_func(*args)
2023-09-08T15:29:17,497              ^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T15:29:17,497     return func(self, options, args)
2023-09-08T15:29:17,497            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-08T15:29:17,497     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-08T15:29:17,497                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-08T15:29:17,497     result = self._result = resolver.resolve(
2023-09-08T15:29:17,497                             ^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-08T15:29:17,497     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-08T15:29:17,497             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-08T15:29:17,497     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-08T15:29:17,497     if not criterion.candidates:
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-08T15:29:17,497     return bool(self._sequence)
2023-09-08T15:29:17,497            ^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-08T15:29:17,497     return any(self)
2023-09-08T15:29:17,497            ^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-08T15:29:17,497     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-08T15:29:17,497            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-08T15:29:17,497     candidate = func()
2023-09-08T15:29:17,497                 ^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-08T15:29:17,497     self._link_candidate_cache[link] = LinkCandidate(
2023-09-08T15:29:17,497                                        ^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-08T15:29:17,497     super().__init__(
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-08T15:29:17,497     self.dist = self._prepare()
2023-09-08T15:29:17,497                 ^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-08T15:29:17,497     dist = self._prepare_distribution()
2023-09-08T15:29:17,497            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-08T15:29:17,497     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-08T15:29:17,497            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-08T15:29:17,497     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-08T15:29:17,497            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-08T15:29:17,497     dist = _get_prepared_distribution(
2023-09-08T15:29:17,497            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-08T15:29:17,497     abstract_dist.prepare_distribution_metadata(
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-08T15:29:17,497     self.req.prepare_metadata()
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-08T15:29:17,497     self.metadata_directory = generate_metadata_legacy(
2023-09-08T15:29:17,497                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:29:17,497   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-08T15:29:17,497     raise MetadataGenerationFailed(package_details=details) from error
2023-09-08T15:29:17,497 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-08T15:29:17,510 Removed pyrmsd==4.0.1 from https://files.pythonhosted.org/packages/f3/30/bf5cc08908f79127fecd306e126be5984ccb30be76bcdb62a39c582975aa/pyRMSD-4.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-1nkcaso1'
2023-09-08T15:29:17,511 Removed build tracker: '/tmp/pip-build-tracker-1nkcaso1'