2023-09-08T15:43:30,020 Created temporary directory: /tmp/pip-build-tracker-mcli6o57
2023-09-08T15:43:30,021 Initialized build tracking at /tmp/pip-build-tracker-mcli6o57
2023-09-08T15:43:30,022 Created build tracker: /tmp/pip-build-tracker-mcli6o57
2023-09-08T15:43:30,022 Entered build tracker: /tmp/pip-build-tracker-mcli6o57
2023-09-08T15:43:30,023 Created temporary directory: /tmp/pip-wheel-22b41o5n
2023-09-08T15:43:30,026 Created temporary directory: /tmp/pip-ephem-wheel-cache-a7mqbgza
2023-09-08T15:43:30,049 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T15:43:30,053 2 location(s) to search for versions of pyseqan:
2023-09-08T15:43:30,053 * https://pypi.org/simple/pyseqan/
2023-09-08T15:43:30,053 * https://www.piwheels.org/simple/pyseqan/
2023-09-08T15:43:30,054 Fetching project page and analyzing links: https://pypi.org/simple/pyseqan/
2023-09-08T15:43:30,055 Getting page https://pypi.org/simple/pyseqan/
2023-09-08T15:43:30,056 Found index url https://pypi.org/simple/
2023-09-08T15:43:30,199 Fetched page https://pypi.org/simple/pyseqan/ as application/vnd.pypi.simple.v1+json
2023-09-08T15:43:30,203   Found link https://files.pythonhosted.org/packages/ab/b8/fc98e00a5a60cbf42a357f524eb16c8c64466c029d43f8cdbc7135c99a6b/pyseqan-1.0.0.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.0.0
2023-09-08T15:43:30,204   Found link https://files.pythonhosted.org/packages/a2/50/60057a68ce00558dc3fdfa8fd5a9b1d518c2e30e6a652215a9e48d024512/pyseqan-1.1.0.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.0
2023-09-08T15:43:30,206   Found link https://files.pythonhosted.org/packages/03/8c/5b51b99ae1ce8c44e880ce7dce69709baffad0a57c3e89514ec1a21d2561/pyseqan-1.1.1.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.1
2023-09-08T15:43:30,208   Found link https://files.pythonhosted.org/packages/26/4a/a93baf01cb176fbf7619e5cc79edc2046ac43e0257f76d940f11db7d0bf5/pyseqan-1.1.2.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.2
2023-09-08T15:43:30,210   Found link https://files.pythonhosted.org/packages/08/6c/d1d7fb85484ebd064cecc165f00306590181f716659df9d4abfcf83c6d43/pyseqan-1.1.3.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.3
2023-09-08T15:43:30,211   Found link https://files.pythonhosted.org/packages/ab/e8/d1cd44f4f839f828cc46e51ad806c96adce34c6028e04cfb74f30a0dfaf4/pyseqan-1.1.4.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.4
2023-09-08T15:43:30,213   Found link https://files.pythonhosted.org/packages/74/81/874d7f326a90d98afd08a03170f992597b5d653ebb6c7adb673b139a1f1c/pyseqan-1.1.6.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.6
2023-09-08T15:43:30,214   Found link https://files.pythonhosted.org/packages/cd/17/be48f8e5e0e4de4d9e0af7333f54afb0bdebff43fa16a114a7dd13f6a8dc/pyseqan-1.1.7.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.7
2023-09-08T15:43:30,216   Found link https://files.pythonhosted.org/packages/b1/07/bfcd2f58723f4f1b823c2e4d5519edfe77624408239f4a4615a9cb37338b/pyseqan-1.1.8.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.8
2023-09-08T15:43:30,218 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyseqan/
2023-09-08T15:43:30,220 Getting page https://www.piwheels.org/simple/pyseqan/
2023-09-08T15:43:30,222 Found index url https://www.piwheels.org/simple/
2023-09-08T15:43:30,500 Fetched page https://www.piwheels.org/simple/pyseqan/ as text/html
2023-09-08T15:43:30,503 Skipping link: not a file: https://www.piwheels.org/simple/pyseqan/
2023-09-08T15:43:30,505 Skipping link: not a file: https://pypi.org/simple/pyseqan/
2023-09-08T15:43:30,530 Given no hashes to check 1 links for project 'pyseqan': discarding no candidates
2023-09-08T15:43:30,555 Collecting pyseqan==1.1.7
2023-09-08T15:43:30,564   Created temporary directory: /tmp/pip-unpack-yck3mr7k
2023-09-08T15:43:30,789   Downloading pyseqan-1.1.7.tar.gz (199 kB)
2023-09-08T15:43:32,649   Added pyseqan==1.1.7 from https://files.pythonhosted.org/packages/cd/17/be48f8e5e0e4de4d9e0af7333f54afb0bdebff43fa16a114a7dd13f6a8dc/pyseqan-1.1.7.tar.gz to build tracker '/tmp/pip-build-tracker-mcli6o57'
2023-09-08T15:43:32,652   Running setup.py (path:/tmp/pip-wheel-22b41o5n/pyseqan_846dc3f78696456ebd54258cd9990fff/setup.py) egg_info for package pyseqan
2023-09-08T15:43:32,654   Created temporary directory: /tmp/pip-pip-egg-info-ht0rperf
2023-09-08T15:43:32,655   Preparing metadata (setup.py): started
2023-09-08T15:43:32,658   Running command python setup.py egg_info
2023-09-08T15:43:33,359   *************************************************************
2023-09-08T15:43:33,359   *** I have detected that you have not run configure.py.
2023-09-08T15:43:33,409   *************************************************************
2023-09-08T15:43:33,449   *** Additionally, no global config files were found.
2023-09-08T15:43:33,565   *** I will go ahead with the default configuration.
2023-09-08T15:43:33,574   *** In all likelihood, this will not work out.
2023-09-08T15:43:33,732   ***
2023-09-08T15:43:33,783   *** See README_SETUP.txt for more information.
2023-09-08T15:43:33,840   ***
2023-09-08T15:43:33,983   *** If the build does fail, just re-run configure.py with the
2023-09-08T15:43:34,048   *** correct arguments, and then retry. Good luck!
2023-09-08T15:43:34,105   *************************************************************
2023-09-08T15:43:34,140   *** HIT Ctrl-C NOW IF THIS IS NOT WHAT YOU WANT
2023-09-08T15:43:34,193   *************************************************************
2023-09-08T15:43:34,359   Continuing in 10 seconds...
2023-09-08T15:43:35,359   Continuing in 9 seconds...
2023-09-08T15:43:36,359   Continuing in 8 seconds...
2023-09-08T15:43:37,359   Continuing in 7 seconds...
2023-09-08T15:43:38,359   Continuing in 6 seconds...
2023-09-08T15:43:39,360   Continuing in 5 seconds...
2023-09-08T15:43:40,360   Continuing in 4 seconds...
2023-09-08T15:43:41,360   Continuing in 3 seconds...
2023-09-08T15:43:42,360   Continuing in 2 seconds...
2023-09-08T15:43:43,361   Continuing in 1 seconds...
2023-09-08T15:43:43,362   Traceback (most recent call last):
2023-09-08T15:43:43,364     File "<string>", line 2, in <module>
2023-09-08T15:43:43,364     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-08T15:43:43,366     File "/tmp/pip-wheel-22b41o5n/pyseqan_846dc3f78696456ebd54258cd9990fff/setup.py", line 152, in <module>
2023-09-08T15:43:43,367       main()
2023-09-08T15:43:43,369     File "/tmp/pip-wheel-22b41o5n/pyseqan_846dc3f78696456ebd54258cd9990fff/setup.py", line 64, in main
2023-09-08T15:43:43,370       ] + conf['BOOST_INC_DIR'] + [os.path.join(conf['SEQAN_DIR'], 'include')]
2023-09-08T15:43:43,371                                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,373     File "<frozen posixpath>", line 76, in join
2023-09-08T15:43:43,374   TypeError: expected str, bytes or os.PathLike object, not NoneType

2023-09-08T15:43:43,472   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-08T15:43:43,485   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-08T15:43:43,485   exec(compile('"'"''"'"''"'"'
2023-09-08T15:43:43,485   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T15:43:43,485   #
2023-09-08T15:43:43,485   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T15:43:43,485   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T15:43:43,485   # - It provides a clear error message when setuptools is not installed.
2023-09-08T15:43:43,485   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T15:43:43,485   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T15:43:43,485   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T15:43:43,485   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T15:43:43,485   import os, sys, tokenize
2023-09-08T15:43:43,485   
2023-09-08T15:43:43,485   try:
2023-09-08T15:43:43,485       import setuptools
2023-09-08T15:43:43,485   except ImportError as error:
2023-09-08T15:43:43,485       print(
2023-09-08T15:43:43,485           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T15:43:43,485           "the build environment.",
2023-09-08T15:43:43,485           file=sys.stderr,
2023-09-08T15:43:43,485       )
2023-09-08T15:43:43,485       sys.exit(1)
2023-09-08T15:43:43,485   
2023-09-08T15:43:43,485   __file__ = %r
2023-09-08T15:43:43,485   sys.argv[0] = __file__
2023-09-08T15:43:43,485   
2023-09-08T15:43:43,485   if os.path.exists(__file__):
2023-09-08T15:43:43,485       filename = __file__
2023-09-08T15:43:43,485       with tokenize.open(__file__) as f:
2023-09-08T15:43:43,485           setup_py_code = f.read()
2023-09-08T15:43:43,485   else:
2023-09-08T15:43:43,485       filename = "<auto-generated setuptools caller>"
2023-09-08T15:43:43,485       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T15:43:43,485   
2023-09-08T15:43:43,485   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T15:43:43,485   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-22b41o5n/pyseqan_846dc3f78696456ebd54258cd9990fff/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-ht0rperf[/]
2023-09-08T15:43:43,485   [bold magenta]cwd[/]: /tmp/pip-wheel-22b41o5n/pyseqan_846dc3f78696456ebd54258cd9990fff/
2023-09-08T15:43:43,486   Preparing metadata (setup.py): finished with status 'error'
2023-09-08T15:43:43,488 ERROR: [present-rich] metadata generation failed
2023-09-08T15:43:43,493 Exception information:
2023-09-08T15:43:43,493 Traceback (most recent call last):
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-08T15:43:43,493     call_subprocess(
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-08T15:43:43,493     raise error
2023-09-08T15:43:43,493 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-08T15:43:43,493 
2023-09-08T15:43:43,493 The above exception was the direct cause of the following exception:
2023-09-08T15:43:43,493 
2023-09-08T15:43:43,493 Traceback (most recent call last):
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T15:43:43,493     status = run_func(*args)
2023-09-08T15:43:43,493              ^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T15:43:43,493     return func(self, options, args)
2023-09-08T15:43:43,493            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-08T15:43:43,493     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-08T15:43:43,493                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-08T15:43:43,493     result = self._result = resolver.resolve(
2023-09-08T15:43:43,493                             ^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-08T15:43:43,493     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-08T15:43:43,493             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-08T15:43:43,493     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-08T15:43:43,493     if not criterion.candidates:
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-08T15:43:43,493     return bool(self._sequence)
2023-09-08T15:43:43,493            ^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-08T15:43:43,493     return any(self)
2023-09-08T15:43:43,493            ^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-08T15:43:43,493     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-08T15:43:43,493            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-08T15:43:43,493     candidate = func()
2023-09-08T15:43:43,493                 ^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-08T15:43:43,493     self._link_candidate_cache[link] = LinkCandidate(
2023-09-08T15:43:43,493                                        ^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-08T15:43:43,493     super().__init__(
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-08T15:43:43,493     self.dist = self._prepare()
2023-09-08T15:43:43,493                 ^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-08T15:43:43,493     dist = self._prepare_distribution()
2023-09-08T15:43:43,493            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-08T15:43:43,493     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-08T15:43:43,493            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-08T15:43:43,493     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-08T15:43:43,493            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-08T15:43:43,493     dist = _get_prepared_distribution(
2023-09-08T15:43:43,493            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-08T15:43:43,493     abstract_dist.prepare_distribution_metadata(
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-08T15:43:43,493     self.req.prepare_metadata()
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-08T15:43:43,493     self.metadata_directory = generate_metadata_legacy(
2023-09-08T15:43:43,493                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T15:43:43,493   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-08T15:43:43,493     raise MetadataGenerationFailed(package_details=details) from error
2023-09-08T15:43:43,493 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-08T15:43:43,505 Removed pyseqan==1.1.7 from https://files.pythonhosted.org/packages/cd/17/be48f8e5e0e4de4d9e0af7333f54afb0bdebff43fa16a114a7dd13f6a8dc/pyseqan-1.1.7.tar.gz from build tracker '/tmp/pip-build-tracker-mcli6o57'
2023-09-08T15:43:43,506 Removed build tracker: '/tmp/pip-build-tracker-mcli6o57'