2023-09-08T15:44:56,541 Created temporary directory: /tmp/pip-build-tracker-1wux3ic3 2023-09-08T15:44:56,543 Initialized build tracking at /tmp/pip-build-tracker-1wux3ic3 2023-09-08T15:44:56,543 Created build tracker: /tmp/pip-build-tracker-1wux3ic3 2023-09-08T15:44:56,544 Entered build tracker: /tmp/pip-build-tracker-1wux3ic3 2023-09-08T15:44:56,545 Created temporary directory: /tmp/pip-wheel-6o2ftviy 2023-09-08T15:44:56,547 Created temporary directory: /tmp/pip-ephem-wheel-cache-aoo0u2qr 2023-09-08T15:44:56,569 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T15:44:56,573 2 location(s) to search for versions of pyseqan: 2023-09-08T15:44:56,573 * https://pypi.org/simple/pyseqan/ 2023-09-08T15:44:56,573 * https://www.piwheels.org/simple/pyseqan/ 2023-09-08T15:44:56,574 Fetching project page and analyzing links: https://pypi.org/simple/pyseqan/ 2023-09-08T15:44:56,574 Getting page https://pypi.org/simple/pyseqan/ 2023-09-08T15:44:56,576 Found index url https://pypi.org/simple/ 2023-09-08T15:44:56,716 Fetched page https://pypi.org/simple/pyseqan/ as application/vnd.pypi.simple.v1+json 2023-09-08T15:44:56,718 Found link https://files.pythonhosted.org/packages/ab/b8/fc98e00a5a60cbf42a357f524eb16c8c64466c029d43f8cdbc7135c99a6b/pyseqan-1.0.0.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.0.0 2023-09-08T15:44:56,719 Found link https://files.pythonhosted.org/packages/a2/50/60057a68ce00558dc3fdfa8fd5a9b1d518c2e30e6a652215a9e48d024512/pyseqan-1.1.0.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.0 2023-09-08T15:44:56,720 Found link https://files.pythonhosted.org/packages/03/8c/5b51b99ae1ce8c44e880ce7dce69709baffad0a57c3e89514ec1a21d2561/pyseqan-1.1.1.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.1 2023-09-08T15:44:56,720 Found link https://files.pythonhosted.org/packages/26/4a/a93baf01cb176fbf7619e5cc79edc2046ac43e0257f76d940f11db7d0bf5/pyseqan-1.1.2.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.2 2023-09-08T15:44:56,721 Found link https://files.pythonhosted.org/packages/08/6c/d1d7fb85484ebd064cecc165f00306590181f716659df9d4abfcf83c6d43/pyseqan-1.1.3.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.3 2023-09-08T15:44:56,722 Found link https://files.pythonhosted.org/packages/ab/e8/d1cd44f4f839f828cc46e51ad806c96adce34c6028e04cfb74f30a0dfaf4/pyseqan-1.1.4.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.4 2023-09-08T15:44:56,722 Found link https://files.pythonhosted.org/packages/74/81/874d7f326a90d98afd08a03170f992597b5d653ebb6c7adb673b139a1f1c/pyseqan-1.1.6.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.6 2023-09-08T15:44:56,723 Found link https://files.pythonhosted.org/packages/cd/17/be48f8e5e0e4de4d9e0af7333f54afb0bdebff43fa16a114a7dd13f6a8dc/pyseqan-1.1.7.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.7 2023-09-08T15:44:56,723 Found link https://files.pythonhosted.org/packages/b1/07/bfcd2f58723f4f1b823c2e4d5519edfe77624408239f4a4615a9cb37338b/pyseqan-1.1.8.tar.gz (from https://pypi.org/simple/pyseqan/), version: 1.1.8 2023-09-08T15:44:56,724 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyseqan/ 2023-09-08T15:44:56,725 Getting page https://www.piwheels.org/simple/pyseqan/ 2023-09-08T15:44:56,726 Found index url https://www.piwheels.org/simple/ 2023-09-08T15:44:56,976 Fetched page https://www.piwheels.org/simple/pyseqan/ as text/html 2023-09-08T15:44:56,977 Skipping link: not a file: https://www.piwheels.org/simple/pyseqan/ 2023-09-08T15:44:56,978 Skipping link: not a file: https://pypi.org/simple/pyseqan/ 2023-09-08T15:44:56,997 Given no hashes to check 1 links for project 'pyseqan': discarding no candidates 2023-09-08T15:44:57,015 Collecting pyseqan==1.1.8 2023-09-08T15:44:57,017 Created temporary directory: /tmp/pip-unpack-az0_4hi6 2023-09-08T15:44:57,230 Downloading pyseqan-1.1.8.tar.gz (202 kB) 2023-09-08T15:44:57,614 Added pyseqan==1.1.8 from https://files.pythonhosted.org/packages/b1/07/bfcd2f58723f4f1b823c2e4d5519edfe77624408239f4a4615a9cb37338b/pyseqan-1.1.8.tar.gz to build tracker '/tmp/pip-build-tracker-1wux3ic3' 2023-09-08T15:44:57,616 Running setup.py (path:/tmp/pip-wheel-6o2ftviy/pyseqan_0b19d24714114fc1b754a7f07c66fcd5/setup.py) egg_info for package pyseqan 2023-09-08T15:44:57,617 Created temporary directory: /tmp/pip-pip-egg-info-d5ha2pfv 2023-09-08T15:44:57,618 Preparing metadata (setup.py): started 2023-09-08T15:44:57,619 Running command python setup.py egg_info 2023-09-08T15:44:58,080 ************************************************************* 2023-09-08T15:44:58,081 *** I have detected that you have not run configure.py. 2023-09-08T15:44:58,081 ************************************************************* 2023-09-08T15:44:58,081 *** Additionally, no global config files were found. 2023-09-08T15:44:58,082 *** I will go ahead with the default configuration. 2023-09-08T15:44:58,082 *** In all likelihood, this will not work out. 2023-09-08T15:44:58,083 *** 2023-09-08T15:44:58,083 *** See README_SETUP.txt for more information. 2023-09-08T15:44:58,083 *** 2023-09-08T15:44:58,084 *** If the build does fail, just re-run configure.py with the 2023-09-08T15:44:58,084 *** correct arguments, and then retry. Good luck! 2023-09-08T15:44:58,084 ************************************************************* 2023-09-08T15:44:58,085 *** HIT Ctrl-C NOW IF THIS IS NOT WHAT YOU WANT 2023-09-08T15:44:58,085 ************************************************************* 2023-09-08T15:44:59,081 Continuing in 10 seconds... 2023-09-08T15:45:00,081 Continuing in 9 seconds... 2023-09-08T15:45:01,081 Continuing in 8 seconds... 2023-09-08T15:45:02,081 Continuing in 7 seconds... 2023-09-08T15:45:03,081 Continuing in 6 seconds... 2023-09-08T15:45:04,081 Continuing in 5 seconds... 2023-09-08T15:45:05,081 Continuing in 4 seconds... 2023-09-08T15:45:06,082 Continuing in 3 seconds... 2023-09-08T15:45:07,082 Continuing in 2 seconds... 2023-09-08T15:45:08,083 Continuing in 1 seconds... 2023-09-08T15:45:08,084 Traceback (most recent call last): 2023-09-08T15:45:08,085 File "", line 2, in 2023-09-08T15:45:08,086 File "", line 34, in 2023-09-08T15:45:08,087 File "/tmp/pip-wheel-6o2ftviy/pyseqan_0b19d24714114fc1b754a7f07c66fcd5/setup.py", line 152, in 2023-09-08T15:45:08,088 main() 2023-09-08T15:45:08,090 File "/tmp/pip-wheel-6o2ftviy/pyseqan_0b19d24714114fc1b754a7f07c66fcd5/setup.py", line 64, in main 2023-09-08T15:45:08,091 ] + conf['BOOST_INC_DIR'] + [os.path.join(conf['SEQAN_DIR'], 'include')] 2023-09-08T15:45:08,092 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,093 File "", line 76, in join 2023-09-08T15:45:08,095 TypeError: expected str, bytes or os.PathLike object, not NoneType 2023-09-08T15:45:08,200 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-08T15:45:08,212 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-08T15:45:08,212 exec(compile('"'"''"'"''"'"' 2023-09-08T15:45:08,212 # This is -- a caller that pip uses to run setup.py 2023-09-08T15:45:08,212 # 2023-09-08T15:45:08,212 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T15:45:08,212 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T15:45:08,212 # - It provides a clear error message when setuptools is not installed. 2023-09-08T15:45:08,212 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T15:45:08,212 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T15:45:08,212 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T15:45:08,212 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T15:45:08,212 import os, sys, tokenize 2023-09-08T15:45:08,212 2023-09-08T15:45:08,212 try: 2023-09-08T15:45:08,212 import setuptools 2023-09-08T15:45:08,212 except ImportError as error: 2023-09-08T15:45:08,212 print( 2023-09-08T15:45:08,212 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T15:45:08,212 "the build environment.", 2023-09-08T15:45:08,212 file=sys.stderr, 2023-09-08T15:45:08,212 ) 2023-09-08T15:45:08,212 sys.exit(1) 2023-09-08T15:45:08,212 2023-09-08T15:45:08,212 __file__ = %r 2023-09-08T15:45:08,212 sys.argv[0] = __file__ 2023-09-08T15:45:08,212 2023-09-08T15:45:08,212 if os.path.exists(__file__): 2023-09-08T15:45:08,212 filename = __file__ 2023-09-08T15:45:08,212 with tokenize.open(__file__) as f: 2023-09-08T15:45:08,212 setup_py_code = f.read() 2023-09-08T15:45:08,212 else: 2023-09-08T15:45:08,212 filename = "" 2023-09-08T15:45:08,212 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T15:45:08,212 2023-09-08T15:45:08,212 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T15:45:08,212 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-6o2ftviy/pyseqan_0b19d24714114fc1b754a7f07c66fcd5/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-d5ha2pfv[/] 2023-09-08T15:45:08,213 [bold magenta]cwd[/]: /tmp/pip-wheel-6o2ftviy/pyseqan_0b19d24714114fc1b754a7f07c66fcd5/ 2023-09-08T15:45:08,214 Preparing metadata (setup.py): finished with status 'error' 2023-09-08T15:45:08,215 ERROR: [present-rich] metadata generation failed 2023-09-08T15:45:08,220 Exception information: 2023-09-08T15:45:08,220 Traceback (most recent call last): 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-08T15:45:08,220 call_subprocess( 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-08T15:45:08,220 raise error 2023-09-08T15:45:08,220 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-08T15:45:08,220 2023-09-08T15:45:08,220 The above exception was the direct cause of the following exception: 2023-09-08T15:45:08,220 2023-09-08T15:45:08,220 Traceback (most recent call last): 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T15:45:08,220 status = run_func(*args) 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T15:45:08,220 return func(self, options, args) 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-08T15:45:08,220 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-08T15:45:08,220 result = self._result = resolver.resolve( 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-08T15:45:08,220 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-08T15:45:08,220 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-08T15:45:08,220 if not criterion.candidates: 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-08T15:45:08,220 return bool(self._sequence) 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-08T15:45:08,220 return any(self) 2023-09-08T15:45:08,220 ^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-08T15:45:08,220 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-08T15:45:08,220 candidate = func() 2023-09-08T15:45:08,220 ^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-08T15:45:08,220 self._link_candidate_cache[link] = LinkCandidate( 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-08T15:45:08,220 super().__init__( 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-08T15:45:08,220 self.dist = self._prepare() 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-08T15:45:08,220 dist = self._prepare_distribution() 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-08T15:45:08,220 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-08T15:45:08,220 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-08T15:45:08,220 dist = _get_prepared_distribution( 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-08T15:45:08,220 abstract_dist.prepare_distribution_metadata( 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-08T15:45:08,220 self.req.prepare_metadata() 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-08T15:45:08,220 self.metadata_directory = generate_metadata_legacy( 2023-09-08T15:45:08,220 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:45:08,220 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-08T15:45:08,220 raise MetadataGenerationFailed(package_details=details) from error 2023-09-08T15:45:08,220 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-08T15:45:08,233 Removed pyseqan==1.1.8 from https://files.pythonhosted.org/packages/b1/07/bfcd2f58723f4f1b823c2e4d5519edfe77624408239f4a4615a9cb37338b/pyseqan-1.1.8.tar.gz from build tracker '/tmp/pip-build-tracker-1wux3ic3' 2023-09-08T15:45:08,234 Removed build tracker: '/tmp/pip-build-tracker-1wux3ic3'