2023-09-08T15:52:16,615 Created temporary directory: /tmp/pip-build-tracker-17buumv1 2023-09-08T15:52:16,616 Initialized build tracking at /tmp/pip-build-tracker-17buumv1 2023-09-08T15:52:16,616 Created build tracker: /tmp/pip-build-tracker-17buumv1 2023-09-08T15:52:16,617 Entered build tracker: /tmp/pip-build-tracker-17buumv1 2023-09-08T15:52:16,617 Created temporary directory: /tmp/pip-wheel-hso0to5v 2023-09-08T15:52:16,621 Created temporary directory: /tmp/pip-ephem-wheel-cache-23ackz9i 2023-09-08T15:52:16,642 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T15:52:16,646 2 location(s) to search for versions of scikit-bio: 2023-09-08T15:52:16,646 * https://pypi.org/simple/scikit-bio/ 2023-09-08T15:52:16,646 * https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T15:52:16,647 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2023-09-08T15:52:16,648 Getting page https://pypi.org/simple/scikit-bio/ 2023-09-08T15:52:16,649 Found index url https://pypi.org/simple/ 2023-09-08T15:52:16,789 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2023-09-08T15:52:16,794 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2023-09-08T15:52:16,794 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2023-09-08T15:52:16,795 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2023-09-08T15:52:16,796 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2023-09-08T15:52:16,796 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2023-09-08T15:52:16,797 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2023-09-08T15:52:16,798 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2023-09-08T15:52:16,799 Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1 2023-09-08T15:52:16,799 Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2 2023-09-08T15:52:16,800 Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3 2023-09-08T15:52:16,801 Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0 2023-09-08T15:52:16,802 Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1 2023-09-08T15:52:16,802 Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2 2023-09-08T15:52:16,803 Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0 2023-09-08T15:52:16,804 Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1 2023-09-08T15:52:16,804 Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2023-09-08T15:52:16,805 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2023-09-08T15:52:16,806 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2023-09-08T15:52:16,806 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2023-09-08T15:52:16,807 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2023-09-08T15:52:16,807 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2023-09-08T15:52:16,808 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2023-09-08T15:52:16,808 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2023-09-08T15:52:16,809 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T15:52:16,810 Getting page https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T15:52:16,811 Found index url https://www.piwheels.org/simple/ 2023-09-08T15:52:17,142 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2023-09-08T15:52:17,147 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,148 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,148 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,149 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,149 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,150 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,151 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,152 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,152 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,153 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,153 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,153 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,154 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,154 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T15:52:17,155 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T15:52:17,156 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2023-09-08T15:52:17,177 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2023-09-08T15:52:17,194 Collecting scikit-bio==0.1.4 2023-09-08T15:52:17,197 Created temporary directory: /tmp/pip-unpack-v09ipcog 2023-09-08T15:52:17,956 Downloading scikit-bio-0.1.4.tar.gz (4.0 MB) 2023-09-08T15:52:19,737 Added scikit-bio==0.1.4 from https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-17buumv1' 2023-09-08T15:52:19,739 Running setup.py (path:/tmp/pip-wheel-hso0to5v/scikit-bio_457e0523ef5f4edeb3f188adb6ef157c/setup.py) egg_info for package scikit-bio 2023-09-08T15:52:19,740 Created temporary directory: /tmp/pip-pip-egg-info-4d2ae8p1 2023-09-08T15:52:19,741 Preparing metadata (setup.py): started 2023-09-08T15:52:19,742 Running command python setup.py egg_info 2023-09-08T15:52:20,507 running egg_info 2023-09-08T15:52:20,508 creating /tmp/pip-pip-egg-info-4d2ae8p1/scikit_bio.egg-info 2023-09-08T15:52:20,525 writing /tmp/pip-pip-egg-info-4d2ae8p1/scikit_bio.egg-info/PKG-INFO 2023-09-08T15:52:20,528 writing dependency_links to /tmp/pip-pip-egg-info-4d2ae8p1/scikit_bio.egg-info/dependency_links.txt 2023-09-08T15:52:20,530 writing requirements to /tmp/pip-pip-egg-info-4d2ae8p1/scikit_bio.egg-info/requires.txt 2023-09-08T15:52:20,531 writing top-level names to /tmp/pip-pip-egg-info-4d2ae8p1/scikit_bio.egg-info/top_level.txt 2023-09-08T15:52:20,532 writing manifest file '/tmp/pip-pip-egg-info-4d2ae8p1/scikit_bio.egg-info/SOURCES.txt' 2023-09-08T15:52:20,645 reading manifest file '/tmp/pip-pip-egg-info-4d2ae8p1/scikit_bio.egg-info/SOURCES.txt' 2023-09-08T15:52:20,646 reading manifest template 'MANIFEST.in' 2023-09-08T15:52:20,673 no previously-included directories found matching 'doc/build' 2023-09-08T15:52:20,675 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-09-08T15:52:20,677 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-09-08T15:52:20,677 adding license file 'COPYING.txt' 2023-09-08T15:52:20,689 writing manifest file '/tmp/pip-pip-egg-info-4d2ae8p1/scikit_bio.egg-info/SOURCES.txt' 2023-09-08T15:52:20,803 Preparing metadata (setup.py): finished with status 'done' 2023-09-08T15:52:20,808 Source in /tmp/pip-wheel-hso0to5v/scikit-bio_457e0523ef5f4edeb3f188adb6ef157c has version 0.1.4, which satisfies requirement scikit-bio==0.1.4 from https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz 2023-09-08T15:52:20,809 Removed scikit-bio==0.1.4 from https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-17buumv1' 2023-09-08T15:52:20,814 Created temporary directory: /tmp/pip-unpack-lski0ms0 2023-09-08T15:52:20,815 Created temporary directory: /tmp/pip-unpack-lgwittpj 2023-09-08T15:52:20,839 Building wheels for collected packages: scikit-bio 2023-09-08T15:52:20,843 Created temporary directory: /tmp/pip-wheel-2x_szp8i 2023-09-08T15:52:20,844 Building wheel for scikit-bio (setup.py): started 2023-09-08T15:52:20,845 Destination directory: /tmp/pip-wheel-2x_szp8i 2023-09-08T15:52:20,846 Running command python setup.py bdist_wheel 2023-09-08T15:52:21,804 running bdist_wheel 2023-09-08T15:52:21,887 running build 2023-09-08T15:52:21,888 running build_py 2023-09-08T15:52:21,908 creating build 2023-09-08T15:52:21,909 creating build/lib.linux-armv7l-cpython-311 2023-09-08T15:52:21,910 creating build/lib.linux-armv7l-cpython-311/skbio 2023-09-08T15:52:21,911 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio 2023-09-08T15:52:21,913 creating build/lib.linux-armv7l-cpython-311/skbio/format 2023-09-08T15:52:21,914 copying skbio/format/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/format 2023-09-08T15:52:21,916 creating build/lib.linux-armv7l-cpython-311/skbio/draw 2023-09-08T15:52:21,917 copying skbio/draw/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/draw 2023-09-08T15:52:21,919 copying skbio/draw/distributions.py -> build/lib.linux-armv7l-cpython-311/skbio/draw 2023-09-08T15:52:21,922 creating build/lib.linux-armv7l-cpython-311/skbio/core 2023-09-08T15:52:21,923 copying skbio/core/sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/core 2023-09-08T15:52:21,926 copying skbio/core/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/core 2023-09-08T15:52:21,927 copying skbio/core/warning.py -> build/lib.linux-armv7l-cpython-311/skbio/core 2023-09-08T15:52:21,929 copying skbio/core/workflow.py -> build/lib.linux-armv7l-cpython-311/skbio/core 2023-09-08T15:52:21,931 copying skbio/core/genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/core 2023-09-08T15:52:21,934 copying skbio/core/distance.py -> build/lib.linux-armv7l-cpython-311/skbio/core 2023-09-08T15:52:21,937 copying skbio/core/exception.py -> build/lib.linux-armv7l-cpython-311/skbio/core 2023-09-08T15:52:21,939 creating build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T15:52:21,940 copying skbio/util/misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T15:52:21,942 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T15:52:21,944 copying skbio/util/testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T15:52:21,946 copying skbio/util/io.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T15:52:21,948 creating build/lib.linux-armv7l-cpython-311/skbio/math 2023-09-08T15:52:21,948 copying skbio/math/subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/math 2023-09-08T15:52:21,950 copying skbio/math/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math 2023-09-08T15:52:21,952 copying skbio/math/gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/math 2023-09-08T15:52:21,955 creating build/lib.linux-armv7l-cpython-311/skbio/app 2023-09-08T15:52:21,955 copying skbio/app/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/app 2023-09-08T15:52:21,957 copying skbio/app/util.py -> build/lib.linux-armv7l-cpython-311/skbio/app 2023-09-08T15:52:21,960 copying skbio/app/parameters.py -> build/lib.linux-armv7l-cpython-311/skbio/app 2023-09-08T15:52:21,962 creating build/lib.linux-armv7l-cpython-311/skbio/parse 2023-09-08T15:52:21,963 copying skbio/parse/record.py -> build/lib.linux-armv7l-cpython-311/skbio/parse 2023-09-08T15:52:21,966 copying skbio/parse/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/parse 2023-09-08T15:52:21,967 copying skbio/parse/record_finder.py -> build/lib.linux-armv7l-cpython-311/skbio/parse 2023-09-08T15:52:21,969 creating build/lib.linux-armv7l-cpython-311/skbio/format/sequences 2023-09-08T15:52:21,970 copying skbio/format/sequences/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences 2023-09-08T15:52:21,972 copying skbio/format/sequences/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences 2023-09-08T15:52:21,973 copying skbio/format/sequences/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences 2023-09-08T15:52:21,976 creating build/lib.linux-armv7l-cpython-311/skbio/format/sequences/tests 2023-09-08T15:52:21,977 copying skbio/format/sequences/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences/tests 2023-09-08T15:52:21,979 copying skbio/format/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences/tests 2023-09-08T15:52:21,980 copying skbio/format/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences/tests 2023-09-08T15:52:21,983 creating build/lib.linux-armv7l-cpython-311/skbio/draw/tests 2023-09-08T15:52:21,984 copying skbio/draw/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/draw/tests 2023-09-08T15:52:21,985 copying skbio/draw/tests/test_distributions.py -> build/lib.linux-armv7l-cpython-311/skbio/draw/tests 2023-09-08T15:52:21,988 creating build/lib.linux-armv7l-cpython-311/skbio/core/tree 2023-09-08T15:52:21,989 copying skbio/core/tree/trie.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree 2023-09-08T15:52:21,991 copying skbio/core/tree/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree 2023-09-08T15:52:21,993 copying skbio/core/tree/_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree 2023-09-08T15:52:21,995 copying skbio/core/tree/tree.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree 2023-09-08T15:52:21,999 copying skbio/core/tree/majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree 2023-09-08T15:52:22,002 creating build/lib.linux-armv7l-cpython-311/skbio/core/alignment 2023-09-08T15:52:22,003 copying skbio/core/alignment/alignment.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment 2023-09-08T15:52:22,006 copying skbio/core/alignment/pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment 2023-09-08T15:52:22,009 copying skbio/core/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment 2023-09-08T15:52:22,011 creating build/lib.linux-armv7l-cpython-311/skbio/core/tests 2023-09-08T15:52:22,012 copying skbio/core/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tests 2023-09-08T15:52:22,015 copying skbio/core/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tests 2023-09-08T15:52:22,017 copying skbio/core/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tests 2023-09-08T15:52:22,019 copying skbio/core/tests/test_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tests 2023-09-08T15:52:22,021 copying skbio/core/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tests 2023-09-08T15:52:22,024 creating build/lib.linux-armv7l-cpython-311/skbio/core/tree/tests 2023-09-08T15:52:22,025 copying skbio/core/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree/tests 2023-09-08T15:52:22,026 copying skbio/core/tree/tests/test_trie.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree/tests 2023-09-08T15:52:22,028 copying skbio/core/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree/tests 2023-09-08T15:52:22,030 copying skbio/core/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree/tests 2023-09-08T15:52:22,033 copying skbio/core/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/core/tree/tests 2023-09-08T15:52:22,035 creating build/lib.linux-armv7l-cpython-311/skbio/core/alignment/ssw 2023-09-08T15:52:22,036 copying skbio/core/alignment/ssw/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment/ssw 2023-09-08T15:52:22,038 creating build/lib.linux-armv7l-cpython-311/skbio/core/alignment/tests 2023-09-08T15:52:22,039 copying skbio/core/alignment/tests/test_alignment.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment/tests 2023-09-08T15:52:22,042 copying skbio/core/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment/tests 2023-09-08T15:52:22,043 copying skbio/core/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment/tests 2023-09-08T15:52:22,046 creating build/lib.linux-armv7l-cpython-311/skbio/core/alignment/ssw/tests 2023-09-08T15:52:22,047 copying skbio/core/alignment/ssw/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment/ssw/tests 2023-09-08T15:52:22,049 copying skbio/core/alignment/ssw/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-311/skbio/core/alignment/ssw/tests 2023-09-08T15:52:22,052 creating build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T15:52:22,053 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T15:52:22,054 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T15:52:22,056 copying skbio/util/tests/test_io.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T15:52:22,058 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T15:52:22,060 creating build/lib.linux-armv7l-cpython-311/skbio/math/stats 2023-09-08T15:52:22,061 copying skbio/math/stats/misc.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats 2023-09-08T15:52:22,063 copying skbio/math/stats/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats 2023-09-08T15:52:22,064 copying skbio/math/stats/spatial.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats 2023-09-08T15:52:22,067 creating build/lib.linux-armv7l-cpython-311/skbio/math/diversity 2023-09-08T15:52:22,068 copying skbio/math/diversity/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity 2023-09-08T15:52:22,070 creating build/lib.linux-armv7l-cpython-311/skbio/math/tests 2023-09-08T15:52:22,071 copying skbio/math/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/math/tests 2023-09-08T15:52:22,073 copying skbio/math/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/tests 2023-09-08T15:52:22,075 copying skbio/math/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/math/tests 2023-09-08T15:52:22,078 creating build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination 2023-09-08T15:52:22,079 copying skbio/math/stats/ordination/correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination 2023-09-08T15:52:22,082 copying skbio/math/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination 2023-09-08T15:52:22,083 copying skbio/math/stats/ordination/base.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination 2023-09-08T15:52:22,086 copying skbio/math/stats/ordination/utils.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination 2023-09-08T15:52:22,088 copying skbio/math/stats/ordination/redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination 2023-09-08T15:52:22,090 copying skbio/math/stats/ordination/principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination 2023-09-08T15:52:22,092 copying skbio/math/stats/ordination/canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination 2023-09-08T15:52:22,095 creating build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance 2023-09-08T15:52:22,096 copying skbio/math/stats/distance/permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance 2023-09-08T15:52:22,098 copying skbio/math/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance 2023-09-08T15:52:22,100 copying skbio/math/stats/distance/base.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance 2023-09-08T15:52:22,102 copying skbio/math/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance 2023-09-08T15:52:22,104 copying skbio/math/stats/distance/anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance 2023-09-08T15:52:22,106 copying skbio/math/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance 2023-09-08T15:52:22,109 creating build/lib.linux-armv7l-cpython-311/skbio/math/stats/tests 2023-09-08T15:52:22,110 copying skbio/math/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/tests 2023-09-08T15:52:22,111 copying skbio/math/stats/tests/test_spatial.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/tests 2023-09-08T15:52:22,114 copying skbio/math/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/tests 2023-09-08T15:52:22,116 creating build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests 2023-09-08T15:52:22,117 copying skbio/math/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests 2023-09-08T15:52:22,118 copying skbio/math/stats/ordination/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests 2023-09-08T15:52:22,122 creating build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests 2023-09-08T15:52:22,123 copying skbio/math/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests 2023-09-08T15:52:22,125 copying skbio/math/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests 2023-09-08T15:52:22,127 copying skbio/math/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests 2023-09-08T15:52:22,129 copying skbio/math/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests 2023-09-08T15:52:22,131 copying skbio/math/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests 2023-09-08T15:52:22,133 copying skbio/math/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests 2023-09-08T15:52:22,136 creating build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha 2023-09-08T15:52:22,137 copying skbio/math/diversity/alpha/lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha 2023-09-08T15:52:22,139 copying skbio/math/diversity/alpha/gini.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha 2023-09-08T15:52:22,141 copying skbio/math/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha 2023-09-08T15:52:22,144 copying skbio/math/diversity/alpha/base.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha 2023-09-08T15:52:22,146 copying skbio/math/diversity/alpha/chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha 2023-09-08T15:52:22,148 copying skbio/math/diversity/alpha/ace.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha 2023-09-08T15:52:22,150 creating build/lib.linux-armv7l-cpython-311/skbio/math/diversity/beta 2023-09-08T15:52:22,151 copying skbio/math/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/beta 2023-09-08T15:52:22,153 copying skbio/math/diversity/beta/base.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/beta 2023-09-08T15:52:22,156 creating build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha/tests 2023-09-08T15:52:22,156 copying skbio/math/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha/tests 2023-09-08T15:52:22,159 copying skbio/math/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha/tests 2023-09-08T15:52:22,160 copying skbio/math/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha/tests 2023-09-08T15:52:22,162 copying skbio/math/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha/tests 2023-09-08T15:52:22,164 copying skbio/math/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha/tests 2023-09-08T15:52:22,166 copying skbio/math/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/alpha/tests 2023-09-08T15:52:22,169 creating build/lib.linux-armv7l-cpython-311/skbio/math/diversity/beta/tests 2023-09-08T15:52:22,170 copying skbio/math/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/beta/tests 2023-09-08T15:52:22,171 copying skbio/math/diversity/beta/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/math/diversity/beta/tests 2023-09-08T15:52:22,174 creating build/lib.linux-armv7l-cpython-311/skbio/app/tests 2023-09-08T15:52:22,175 copying skbio/app/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/app/tests 2023-09-08T15:52:22,177 copying skbio/app/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/app/tests 2023-09-08T15:52:22,180 copying skbio/app/tests/test_parameters.py -> build/lib.linux-armv7l-cpython-311/skbio/app/tests 2023-09-08T15:52:22,183 creating build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T15:52:22,184 copying skbio/parse/sequences/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T15:52:22,186 copying skbio/parse/sequences/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T15:52:22,188 copying skbio/parse/sequences/clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T15:52:22,190 copying skbio/parse/sequences/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T15:52:22,193 copying skbio/parse/sequences/factory.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T15:52:22,195 copying skbio/parse/sequences/iterator.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T15:52:22,197 creating build/lib.linux-armv7l-cpython-311/skbio/parse/tests 2023-09-08T15:52:22,198 copying skbio/parse/tests/test_record.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/tests 2023-09-08T15:52:22,201 copying skbio/parse/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/tests 2023-09-08T15:52:22,203 copying skbio/parse/tests/test_record_finder.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/tests 2023-09-08T15:52:22,206 creating build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T15:52:22,206 copying skbio/parse/sequences/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T15:52:22,208 copying skbio/parse/sequences/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T15:52:22,210 copying skbio/parse/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T15:52:22,212 copying skbio/parse/sequences/tests/test_factory.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T15:52:22,215 copying skbio/parse/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T15:52:22,217 copying skbio/parse/sequences/tests/test_iterator.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T15:52:22,228 creating build/lib.linux-armv7l-cpython-311/skbio/core/tests/data 2023-09-08T15:52:22,229 copying skbio/core/tests/data/dm_2x2_asym.txt -> build/lib.linux-armv7l-cpython-311/skbio/core/tests/data 2023-09-08T15:52:22,231 copying skbio/core/tests/data/bad_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/core/tests/data 2023-09-08T15:52:22,233 copying skbio/core/tests/data/dm_3x3.txt -> build/lib.linux-armv7l-cpython-311/skbio/core/tests/data 2023-09-08T15:52:22,235 creating build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,236 copying skbio/math/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,238 copying skbio/math/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,240 copying skbio/math/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,242 copying skbio/math/tests/data/vr_out -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,244 copying skbio/math/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,245 copying skbio/math/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,247 copying skbio/math/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,249 copying skbio/math/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,251 copying skbio/math/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,253 copying skbio/math/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,255 copying skbio/math/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,257 copying skbio/math/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/math/tests/data 2023-09-08T15:52:22,259 creating build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,260 copying skbio/math/stats/ordination/tests/data/exp_OrdRes_RDA_site -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,262 copying skbio/math/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,264 copying skbio/math/stats/ordination/tests/data/v_error13 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,266 copying skbio/math/stats/ordination/tests/data/v_error14 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,268 copying skbio/math/stats/ordination/tests/data/exp_OrdRes_CCA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,270 copying skbio/math/stats/ordination/tests/data/exp_OrdRes_CCA_species -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,272 copying skbio/math/stats/ordination/tests/data/error2 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,274 copying skbio/math/stats/ordination/tests/data/error6 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,277 copying skbio/math/stats/ordination/tests/data/error5 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,279 copying skbio/math/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,281 copying skbio/math/stats/ordination/tests/data/v_error2 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,283 copying skbio/math/stats/ordination/tests/data/example2_scores -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,285 copying skbio/math/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,287 copying skbio/math/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,289 copying skbio/math/stats/ordination/tests/data/PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,291 copying skbio/math/stats/ordination/tests/data/v_error8 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,292 copying skbio/math/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,294 copying skbio/math/stats/ordination/tests/data/L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,296 copying skbio/math/stats/ordination/tests/data/v_error6 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,298 copying skbio/math/stats/ordination/tests/data/v_error3 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,300 copying skbio/math/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,302 copying skbio/math/stats/ordination/tests/data/v_error5 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,304 copying skbio/math/stats/ordination/tests/data/error4 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,306 copying skbio/math/stats/ordination/tests/data/exp_OrdRes_RDA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,308 copying skbio/math/stats/ordination/tests/data/v_error9 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,311 copying skbio/math/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,313 copying skbio/math/stats/ordination/tests/data/v_error7 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,314 copying skbio/math/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,316 copying skbio/math/stats/ordination/tests/data/v_error12 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,318 copying skbio/math/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,320 copying skbio/math/stats/ordination/tests/data/error1 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,323 copying skbio/math/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,325 copying skbio/math/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,326 copying skbio/math/stats/ordination/tests/data/v_error10 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,329 copying skbio/math/stats/ordination/tests/data/exp_OrdRes_PCoA_site -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,331 copying skbio/math/stats/ordination/tests/data/exp_OrdRes_CCA_site -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,333 copying skbio/math/stats/ordination/tests/data/error3 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,335 copying skbio/math/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,337 copying skbio/math/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,339 copying skbio/math/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,341 copying skbio/math/stats/ordination/tests/data/exp_OrdRes_RDA_species -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,343 copying skbio/math/stats/ordination/tests/data/v_error11 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,345 copying skbio/math/stats/ordination/tests/data/example3_scores -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,347 copying skbio/math/stats/ordination/tests/data/error7 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,349 copying skbio/math/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,351 copying skbio/math/stats/ordination/tests/data/v_error4 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,354 copying skbio/math/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,356 copying skbio/math/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,358 copying skbio/math/stats/ordination/tests/data/v_error1 -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,360 copying skbio/math/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/ordination/tests/data 2023-09-08T15:52:22,362 creating build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,363 copying skbio/math/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,365 copying skbio/math/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,367 copying skbio/math/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,369 copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,371 copying skbio/math/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,373 copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,375 copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_too_few_permutations.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,377 copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,379 copying skbio/math/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,381 copying skbio/math/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,383 copying skbio/math/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,385 copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,387 copying skbio/math/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,389 copying skbio/math/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,392 copying skbio/math/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,394 copying skbio/math/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,396 copying skbio/math/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,398 copying skbio/math/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/math/stats/distance/tests/data 2023-09-08T15:52:22,400 creating build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T15:52:22,401 copying skbio/parse/sequences/tests/data/fq1.fastq.gz -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T15:52:22,403 copying skbio/parse/sequences/tests/data/fna1.qual -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T15:52:22,405 copying skbio/parse/sequences/tests/data/fq1.fq -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T15:52:22,407 copying skbio/parse/sequences/tests/data/noextensionfasta -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T15:52:22,409 copying skbio/parse/sequences/tests/data/fna1.fna.gz -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T15:52:22,411 copying skbio/parse/sequences/tests/data/fna1.fasta -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T15:52:22,426 running build_ext 2023-09-08T15:52:22,433 building 'skbio.math._subsample' extension 2023-09-08T15:52:22,434 creating build/temp.linux-armv7l-cpython-311 2023-09-08T15:52:22,434 creating build/temp.linux-armv7l-cpython-311/skbio 2023-09-08T15:52:22,435 creating build/temp.linux-armv7l-cpython-311/skbio/math 2023-09-08T15:52:22,436 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c skbio/math/_subsample.c -o build/temp.linux-armv7l-cpython-311/skbio/math/_subsample.o 2023-09-08T15:52:22,809 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-09-08T15:52:22,810 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-08T15:52:22,811 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-08T15:52:22,811 from skbio/math/_subsample.c:346: 2023-09-08T15:52:22,812 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-08T15:52:22,812 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-08T15:52:22,813 | ^~~~~~~ 2023-09-08T15:52:22,894 skbio/math/_subsample.c: In function ‘__Pyx_InitCachedConstants’: 2023-09-08T15:52:22,897 skbio/math/_subsample.c:3858:262: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-08T15:52:22,898 3858 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_jrideout_virtualenvs_sciki, __pyx_n_s_subsample_without_replacement, 17, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T15:52:22,898 | ^~ 2023-09-08T15:52:22,899 | | 2023-09-08T15:52:22,899 | int 2023-09-08T15:52:22,900 skbio/math/_subsample.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T15:52:22,901 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T15:52:22,901 | ^~~~~ 2023-09-08T15:52:22,902 In file included from /usr/include/python3.11/Python.h:71, 2023-09-08T15:52:22,903 from skbio/math/_subsample.c:16: 2023-09-08T15:52:22,903 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-08T15:52:22,904 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T15:52:22,904 | ^~~~~~~~~~ 2023-09-08T15:52:22,905 skbio/math/_subsample.c:3858:266: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-08T15:52:22,906 3858 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_jrideout_virtualenvs_sciki, __pyx_n_s_subsample_without_replacement, 17, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T15:52:22,906 | ^~~~~~~~~~~~~~~~~ 2023-09-08T15:52:22,907 | | 2023-09-08T15:52:22,908 | PyObject * {aka struct _object *} 2023-09-08T15:52:22,908 skbio/math/_subsample.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T15:52:22,909 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T15:52:22,909 | ^~~~ 2023-09-08T15:52:22,910 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-08T15:52:22,910 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T15:52:22,911 | ^~~ 2023-09-08T15:52:22,912 skbio/math/_subsample.c:124:11: error: too few arguments to function ‘PyCode_New’ 2023-09-08T15:52:22,912 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T15:52:22,913 | ^~~~~~~~~~ 2023-09-08T15:52:22,913 skbio/math/_subsample.c:3858:33: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T15:52:22,914 3858 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_jrideout_virtualenvs_sciki, __pyx_n_s_subsample_without_replacement, 17, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 17; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T15:52:22,915 | ^~~~~~~~~~~~~~~~ 2023-09-08T15:52:22,915 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T15:52:22,916 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T15:52:22,917 | ^~~~~~~~~~ 2023-09-08T15:52:22,917 skbio/math/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2023-09-08T15:52:22,918 skbio/math/_subsample.c:4145:21: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T15:52:22,919 4145 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T15:52:22,919 | ^ 2023-09-08T15:52:22,920 In file included from /usr/include/python3.11/unicodeobject.h:1042, 2023-09-08T15:52:22,920 from /usr/include/python3.11/Python.h:51: 2023-09-08T15:52:22,921 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T15:52:22,922 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T15:52:22,922 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T15:52:22,923 skbio/math/_subsample.c:4145:21: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T15:52:22,924 4145 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T15:52:22,924 | ^ 2023-09-08T15:52:22,925 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T15:52:22,926 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T15:52:22,926 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T15:52:22,927 skbio/math/_subsample.c:4161:25: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T15:52:22,927 4161 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T15:52:22,928 | ^ 2023-09-08T15:52:22,928 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T15:52:22,929 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T15:52:22,929 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T15:52:22,930 skbio/math/_subsample.c:4161:25: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T15:52:22,930 4161 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T15:52:22,930 | ^ 2023-09-08T15:52:22,931 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T15:52:22,931 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T15:52:22,932 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T15:52:23,013 skbio/math/_subsample.c: In function ‘__Pyx_CreateCodeObjectForTraceback’: 2023-09-08T15:52:23,018 skbio/math/_subsample.c:6173:9: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-08T15:52:23,019 6173 | py_line, /*int firstlineno,*/ 2023-09-08T15:52:23,019 | ^~~~~~~ 2023-09-08T15:52:23,019 | | 2023-09-08T15:52:23,020 | int 2023-09-08T15:52:23,020 skbio/math/_subsample.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T15:52:23,021 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T15:52:23,021 | ^~~~~ 2023-09-08T15:52:23,022 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-08T15:52:23,023 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T15:52:23,023 | ^~~~~~~~~~ 2023-09-08T15:52:23,024 skbio/math/_subsample.c:6174:9: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-08T15:52:23,025 6174 | __pyx_empty_bytes /*PyObject *lnotab*/ 2023-09-08T15:52:23,025 | ^~~~~~~~~~~~~~~~~ 2023-09-08T15:52:23,026 | | 2023-09-08T15:52:23,026 | PyObject * {aka struct _object *} 2023-09-08T15:52:23,027 skbio/math/_subsample.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T15:52:23,027 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T15:52:23,028 | ^~~~ 2023-09-08T15:52:23,028 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-08T15:52:23,029 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T15:52:23,029 | ^~~ 2023-09-08T15:52:23,030 skbio/math/_subsample.c:124:11: error: too few arguments to function ‘PyCode_New’ 2023-09-08T15:52:23,031 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T15:52:23,031 | ^~~~~~~~~~ 2023-09-08T15:52:23,032 skbio/math/_subsample.c:6159:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T15:52:23,033 6159 | py_code = __Pyx_PyCode_New( 2023-09-08T15:52:23,033 | ^~~~~~~~~~~~~~~~ 2023-09-08T15:52:23,034 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T15:52:23,034 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T15:52:23,035 | ^~~~~~~~~~ 2023-09-08T15:52:23,035 skbio/math/_subsample.c: In function ‘__Pyx_AddTraceback’: 2023-09-08T15:52:23,040 skbio/math/_subsample.c:6205:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-08T15:52:23,040 6205 | py_frame->f_lineno = py_line; 2023-09-08T15:52:23,041 | ^~ 2023-09-08T15:52:23,080 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: 2023-09-08T15:52:23,081 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h: At top level: 2023-09-08T15:52:23,081 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2023-09-08T15:52:23,082 1477 | _import_array(void) 2023-09-08T15:52:23,082 | ^~~~~~~~~~~~~ 2023-09-08T15:52:23,086 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-08T15:52:23,213 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-08T15:52:23,228 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-08T15:52:23,228 exec(compile('"'"''"'"''"'"' 2023-09-08T15:52:23,228 # This is -- a caller that pip uses to run setup.py 2023-09-08T15:52:23,228 # 2023-09-08T15:52:23,228 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T15:52:23,228 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T15:52:23,228 # - It provides a clear error message when setuptools is not installed. 2023-09-08T15:52:23,228 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T15:52:23,228 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T15:52:23,228 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T15:52:23,228 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T15:52:23,228 import os, sys, tokenize 2023-09-08T15:52:23,228 2023-09-08T15:52:23,228 try: 2023-09-08T15:52:23,228 import setuptools 2023-09-08T15:52:23,228 except ImportError as error: 2023-09-08T15:52:23,228 print( 2023-09-08T15:52:23,228 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T15:52:23,228 "the build environment.", 2023-09-08T15:52:23,228 file=sys.stderr, 2023-09-08T15:52:23,228 ) 2023-09-08T15:52:23,228 sys.exit(1) 2023-09-08T15:52:23,228 2023-09-08T15:52:23,228 __file__ = %r 2023-09-08T15:52:23,228 sys.argv[0] = __file__ 2023-09-08T15:52:23,228 2023-09-08T15:52:23,228 if os.path.exists(__file__): 2023-09-08T15:52:23,228 filename = __file__ 2023-09-08T15:52:23,228 with tokenize.open(__file__) as f: 2023-09-08T15:52:23,228 setup_py_code = f.read() 2023-09-08T15:52:23,228 else: 2023-09-08T15:52:23,228 filename = "" 2023-09-08T15:52:23,228 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T15:52:23,228 2023-09-08T15:52:23,228 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T15:52:23,228 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-hso0to5v/scikit-bio_457e0523ef5f4edeb3f188adb6ef157c/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-2x_szp8i[/] 2023-09-08T15:52:23,229 [bold magenta]cwd[/]: /tmp/pip-wheel-hso0to5v/scikit-bio_457e0523ef5f4edeb3f188adb6ef157c/ 2023-09-08T15:52:23,229 Building wheel for scikit-bio (setup.py): finished with status 'error' 2023-09-08T15:52:23,230 ERROR: Failed building wheel for scikit-bio 2023-09-08T15:52:23,232 Running setup.py clean for scikit-bio 2023-09-08T15:52:23,233 Running command python setup.py clean 2023-09-08T15:52:23,980 running clean 2023-09-08T15:52:24,017 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T15:52:24,019 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T15:52:24,092 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-08T15:52:24,093 'build/scripts-3.11' does not exist -- can't clean it 2023-09-08T15:52:24,093 removing 'build' 2023-09-08T15:52:24,203 Failed to build scikit-bio 2023-09-08T15:52:24,204 ERROR: Failed to build one or more wheels 2023-09-08T15:52:24,206 Exception information: 2023-09-08T15:52:24,206 Traceback (most recent call last): 2023-09-08T15:52:24,206 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T15:52:24,206 status = run_func(*args) 2023-09-08T15:52:24,206 ^^^^^^^^^^^^^^^ 2023-09-08T15:52:24,206 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T15:52:24,206 return func(self, options, args) 2023-09-08T15:52:24,206 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T15:52:24,206 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-08T15:52:24,206 raise CommandError("Failed to build one or more wheels") 2023-09-08T15:52:24,206 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-08T15:52:24,209 Removed build tracker: '/tmp/pip-build-tracker-17buumv1'