2023-09-08T15:59:29,212 Created temporary directory: /tmp/pip-build-tracker-h6jos00m
2023-09-08T15:59:29,213 Initialized build tracking at /tmp/pip-build-tracker-h6jos00m
2023-09-08T15:59:29,214 Created build tracker: /tmp/pip-build-tracker-h6jos00m
2023-09-08T15:59:29,214 Entered build tracker: /tmp/pip-build-tracker-h6jos00m
2023-09-08T15:59:29,215 Created temporary directory: /tmp/pip-wheel-c3nf9k_z
2023-09-08T15:59:29,218 Created temporary directory: /tmp/pip-ephem-wheel-cache-toj3dyte
2023-09-08T15:59:29,239 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T15:59:29,243 2 location(s) to search for versions of python-libsbml:
2023-09-08T15:59:29,243 * https://pypi.org/simple/python-libsbml/
2023-09-08T15:59:29,243 * https://www.piwheels.org/simple/python-libsbml/
2023-09-08T15:59:29,244 Fetching project page and analyzing links: https://pypi.org/simple/python-libsbml/
2023-09-08T15:59:29,245 Getting page https://pypi.org/simple/python-libsbml/
2023-09-08T15:59:29,246 Found index url https://pypi.org/simple/
2023-09-08T15:59:29,427 Fetched page https://pypi.org/simple/python-libsbml/ as application/vnd.pypi.simple.v1+json
2023-09-08T15:59:29,510   Found link https://files.pythonhosted.org/packages/ba/f6/1b2b576d7095fee1d44d532d9893d416286f07fec97dd60711076840f927/python-libsbml-5.10.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.0
2023-09-08T15:59:29,510   Found link https://files.pythonhosted.org/packages/5b/98/01bc40c57ff9d2fea1d7f64cefd984c8ab7ef750300cb338bab7976e74a2/python-libsbml-5.10.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.1
2023-09-08T15:59:29,511   Found link https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.10.2
2023-09-08T15:59:29,512   Found link https://files.pythonhosted.org/packages/8b/66/f236549238eeade17cd1463573dffbcb627eec40fea4e66864b50042c79e/python-libsbml-5.11.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.0
2023-09-08T15:59:29,512   Found link https://files.pythonhosted.org/packages/f6/57/0a3b6bc1713993c361983bed81ccd5fb77ee3be45f99091d3e1ce7142e56/python-libsbml-5.11.4.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.11.4
2023-09-08T15:59:29,513   Skipping link: Missing project version for python-libsbml: https://files.pythonhosted.org/packages/bc/0f/c0769b20c90a6d431d3c78842a8670156bb2e08074662a070bfefbdc56b2/python-libsbml_5.12.0.tar.gz (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,514   Found link https://files.pythonhosted.org/packages/4a/4c/2d8c34c5284fbb93cd722a07d09e2df6d79b88b99f33b8b880da9aa67063/python-libsbml-5.12.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.12.1
2023-09-08T15:59:29,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/75/d874a8a9fbb46699aaf2219d37f9f8febcf62ecf0b344f70771c8fef87a5/python_libsbml-5.12.1-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,515   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/4f/8d3c8bf1600ddc1f0152997687311f78802e8920638778af792413efd8c9/python_libsbml-5.12.1-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,516   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/7a/52fddc62273272c9e6bfdb74856ddfe1d43c33b5bdbd35574a15ffe2622b/python_libsbml-5.12.1-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/13/1d2e723bdf1fae0a28552296dbae55c84f39e1b1bef13aa5f96c60084d0c/python_libsbml-5.12.1-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,517   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/41/d1bc4a9a202e147f20c0494cc04c688f1ec38dad797efeb79347d8ecb154/python_libsbml-5.12.1-cp27-none-macosx_10_5_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,518   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/f2/1976fc9be1c15321fbdb9a940565ad8e27046b730f10762d38dac26126be/python_libsbml-5.12.1-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/41/99c4550ea60f136563da5d0c153fdd2f05f8f23fcb4fe29a94b12a416066/python_libsbml-5.12.1-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,519   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/e8/ed3ff9a07dd95c3288d7518605ee643c51b123b896923fe393c8b362d657/python_libsbml-5.12.1-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/68/f3a065e75f1e15c4232f4e31acfde745d325ed07a629e161c17120883a51/python_libsbml-5.12.1-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,520   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/df/55d634f5370d1c0d592d1e855c90bf88ffe19d20af20210381810fce1cd1/python_libsbml-5.12.1-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/02/9c36f9d1e6ac08d53b7f07cac534bf68c0351fa684b2d4f8ab97b8d2a177/python_libsbml-5.12.1-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,521   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/86/1fbc228f36f452ddbb2e354207f02310ecadfefcc03db74063cba77f878c/python_libsbml-5.13.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/d4/69ce82f3bbd480cd19e49ed30e893c7b8986c695ccfd7b445fb866fa6401/python_libsbml-5.13.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,522   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/d7/45761799091c3bbcbc290500f9407b5f2c77b58c3508f0ba23e9bd576232/python_libsbml-5.13.0-cp26-cp26m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,523   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/e5/a6fffac0a952aeda266ff3312cc062b6ee3ab8d472fc8ae969b31bd49f00/python_libsbml-5.13.0-cp26-cp26m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/00/6082233d65cc868afd7922c62d3d7abd3d093941de97b6b47b78c4c4485d/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,524   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/b1/1e60404840af916a624b971cf7382e081f393fbde71b74e0033c7c4f4ce4/python_libsbml-5.13.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/b5/4c3e5d486bc6a3957c7431f456d6dd9c0bf88042d127c5388b601b0e4213/python_libsbml-5.13.0-cp27-cp27m-macosx_10_11_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,525   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/92/bad5934226a9f43e6b6db5066e827d92f74ef566d0a204ae31c6f5b88dea/python_libsbml-5.13.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,526   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/8f/876b851dc0cffa1636336c910145c46a804678f184b76fe417ab7cc5bc2a/python_libsbml-5.13.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/c2/8d093aff917fa13725f3f371c50b506b3a12b4f7366012f082853d705c78/python_libsbml-5.13.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,527   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/07/bd958d95cef39dca7f511957c389e3c610516064f05408251c1eb56dc50f/python_libsbml-5.13.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/f2/be63c94d661e5f3686c91a4ac1ad932d21abc014500badb881f9eff57527/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,528   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/d1/e92a97a62f7911596df0c435e869ebce315fea8aa774f02f5d015e39b7c6/python_libsbml-5.13.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/c2/5c011c549b87a7e64b03d0de502d6b0b2af5004348ec1b27aa2411690eb3/python_libsbml-5.13.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,529   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/bc/452b2d7c11183a1da07acbb53f6dc85d13fc99ce971ee00418eaf86c0be8/python_libsbml-5.13.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,530   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/a5/f1b17ad530fb0f74215b862b5295e9f348e709225ca276b5f39894a8c14b/python_libsbml-5.13.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,530   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/d1/396588e6de833c6408ead90a7b4b6a0221190d61664794c1f66004290f41/python_libsbml-5.13.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/75/63bc184f30b8caa43c9aceccbd431464c3f016164f3a4f9f56f8e0710134/python_libsbml-5.13.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,531   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/53/000fd2c490c866f125916272f765e439921a2b4fe7da77a3680ec821fd8a/python_libsbml-5.13.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/3b/5c7e38c175ac05c5e7554f4e45aac83a336042776527184842ca8a967422/python_libsbml-5.13.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,532   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/b4/6d2c61a58d28006a98b018b2a60d5977ac09eb71d61f27f6fe6afffff076/python_libsbml-5.13.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,533   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/c8/989ee6d0efe9de5b248330c381f96fdc9b9c3de21e46828097cc6fdd7dcf/python_libsbml-5.13.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,534   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8f/2c/7bd3f37c1e09acc6b07f25170048bae1ac62773d593192d5c3bb311f5b4f/python_libsbml-5.13.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,534   Found link https://files.pythonhosted.org/packages/05/26/5909024b419be458d7a4fd70c39d42ad1a513c2548238fa5d1dfa7b6d9b1/python_libsbml-5.13.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.13.0
2023-09-08T15:59:29,535   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d0/71dd6c9a91af1c6dc4105209c9b3b2f3c854e9cfc8a450b997adff062cfe/python_libsbml-5.13.2-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,536   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a8/64/09a08b0d70affb436b7cbbe6ded8b603d6abe13d5f596a41fd45be097077/python_libsbml-5.13.2-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,536   Found link https://files.pythonhosted.org/packages/69/60/1e6be741c0df5f7260214ade65ac90dca5351ac3810ae689e475ef8bc76d/python-libsbml-5.15.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.15.0
2023-09-08T15:59:29,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/6f/98600da5af01c25b4d917005bad692901b0a745a9a32a9d0473d1c5be473/python_libsbml-5.15.0-cp26-cp26m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,537   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/f3/a05a935fee903f6e0bab0cc1e8bcafcdf8dbf9c3dc24bc7ae1011345fa7a/python_libsbml-5.15.0-cp26-cp26m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/b3/ff7154fdd45757a5de1ab99f2e0da919019e11a2005c193fcdd741ddfdf1/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,538   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9a/a3/578a07770763c1ef7594dbb1528a8db43119f5a995b368a8b15e0129d869/python_libsbml-5.15.0-cp26-cp26mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,539   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ee/ac/b8f3b4271c1d49e2968d048f2377e73cf872fbe204cd6f4bfb7209d5cfb0/python_libsbml-5.15.0-cp27-cp27m-macosx_10_12_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/58/311282bc21a089a3c326e99c66fdca68b9256da003df3b6d183ae8381d06/python_libsbml-5.15.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,540   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5a/c7/8f1211bb578fae1c4e0c5179958cd62e1b778ddbc6d7e7413761dd9bd2d4/python_libsbml-5.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,541   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/8d/f963c648225f0b25dc1b2397ecd2853d8cf03caa71fb86c852e0930f34e0/python_libsbml-5.15.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3e/840aa8709bd49a604b860ea0b4947ebd551cee49105a65839016e93635ba/python_libsbml-5.15.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,542   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a0/10/2992da7d6e4670a293094e3db197b185aa4ccc21b78e2df9eca7a3bd7169/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,543   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/19/a1ed7d21ed309fb2894628fec6d1fd77ec073de7ce6e432911283eebdf21/python_libsbml-5.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/92/69259ae023bd271ecab63782063a18bf70616a1eec287f098049e7a07c50/python_libsbml-5.15.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,544   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/24/f654249038fdb7427b2b1ff884257247c3d78af3174e83c5644dedbcd46c/python_libsbml-5.15.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/94/53adbf6920989dce040430f6c17cc989adf0837673cdc68fb1a0691e3aa4/python_libsbml-5.15.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,545   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ba/af/78f8c859b61ef5ecf4ce25f7ab7e1b3343f0f4d9e8cc72426f7347211d39/python_libsbml-5.15.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7e/2c/75451029c53fb51908e2fe99c426aefa60993e7f5940333f28b0376cce43/python_libsbml-5.15.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,546   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/00/5d/8f24ac7f3cdac7e9b7b3e581c681168bd6ef553ca2311db32739a3515fd2/python_libsbml-5.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/f6/898a0f649fc4dedba94e1ff042a1610575e7888d277c3d5e1f16034b5848/python_libsbml-5.15.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,547   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/6e/ca5de135599a6ef9723490a019e4e6494195b80cb836627dc2c388890968/python_libsbml-5.15.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,548   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d8/49/8897f8a95a11343a8c087070c9a0fb7eb67c974b60e45dbe891a6c69fcb0/python_libsbml-5.15.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/4e/a4396c62eddd23ffaf3f39b5c58b12ad4ab8ff96a59c91168406ede5b228/python_libsbml-5.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,549   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/45/2dcfd76ce86dcbc9090227e2efb2740a9007bfcbf65f4b22317e33470e16/python_libsbml-5.15.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/ea/793817d66a86aca4649c5eb1230ab1d68b317ac95d950d650346ed502678/python_libsbml-5.15.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,550   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/57/3bd7ce2be4b812932630f8a0e7275c7cce243d6a188ee8bdb84a08ca84eb/python_libsbml-5.15.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,551   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/af/ef570dabc4939c4d3811e0accec5194cd1676244e9a5a60ea109a4891c89/python_libsbml-5.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/19/f08996af1f77fbd9d42f35039e2e2d7904a561e403f26745a280c720b43a/python_libsbml-5.15.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,552   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/8d/a55eafdcdea42a05c139efbd211eebf652931319969a1b185ea57ad26492/python_libsbml-5.15.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,553   Found link https://files.pythonhosted.org/packages/a8/81/020b63e8958a15d3b18ece3507b40f0f5e720dfa67836e610b7498c28c5f/python-libsbml-5.16.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.16.0
2023-09-08T15:59:29,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/ab/9b15db4a7eab4246609bcbd6bc6a6c781fca049d815e44815ecb94d730f7/python_libsbml-5.16.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,554   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ec/9e/bb9b62a1cd5346b80feb2f2b07d486406dd78248e619cdd6cde20ef6828b/python_libsbml-5.16.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/19/24/bf7406b0bf48e7f280df71909e8569a09b90f4d963197580f50e24f5caf0/python_libsbml-5.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,555   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/02/30e48a6b3a09e671657d2c90057e38dac63bc4724bf145a17890486eedbd/python_libsbml-5.16.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ff/90e81a4f806c6f05d2183951bd00c2cf1844a075d49f42d6de6a92704990/python_libsbml-5.16.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,556   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/2b/5400b3e836123cb141a4c9bb6236602d1c903dff650a1adbb25894b9e7b1/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,557   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/3d/cb82882f749bd32c5684881d6fdba8097b17df1c392b5aa0651c113c7769/python_libsbml-5.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,558   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/2e/137140673f0b6a8c8a70fdee306eeb0cf6476176580bc0fafbf856ec3b31/python_libsbml-5.16.0-cp33-cp33m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,558   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/56/f1/df5236fc4af4da503fb18292764e3a45f795bff0f134dc833350baf32b6c/python_libsbml-5.16.0-cp33-cp33m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,559   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/ed/aeb6514b05dffc55100ec9aee26eaaca40fc22d111f4d09f113672b8d579/python_libsbml-5.16.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,560   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/dc/73aa857447bc4ea0b2096870e29d54cbbacba47563def421a01571ea55fb/python_libsbml-5.16.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,560   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/e4/fcb29f3a4cd10fc02d9dc11909d95715f651bca7b76ab1787b83b10f822e/python_libsbml-5.16.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,561   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/6f/a23d38b29f617cf44d430a0d780df6141d9bf58374b069ae3e083f459b17/python_libsbml-5.16.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,562   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/12/351bbe92cc0ded10ed84449038010b42f40dac788bdb264e274081f9fc29/python_libsbml-5.16.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,562   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7b/d1/c02e9839ff6c7bba100d672816a9a6feaaed769a97dddfe547880a0b6c09/python_libsbml-5.16.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,563   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c5/c6/9334ad4e74de6d503a95e9f0fe5f863f707c1ef5171cef71e2393f3086e2/python_libsbml-5.16.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,563   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/9d/4712affd5cc8429336cf363086d4fc560e6d2ccb68a65284565ad8de4b3c/python_libsbml-5.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,563   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/0f/bf5f9c7ba3eecc67b922551f790dbbedc8e0c94c1ec92bbed6b86c292854/python_libsbml-5.16.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,564   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/45/92f0fe2fc5b18ddf7090f76fe3fa8c35184f794cbb3efa5e4dba66d81b36/python_libsbml-5.16.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,565   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/19/4c5551eed22ae100464475647d9ee9386a1acac61172aa572f5be0a6ea6b/python_libsbml-5.16.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,565   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/54/a106bd20158f018c44956e6c1058f5943e340279bccd82d6903f22fc2be9/python_libsbml-5.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,566   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/10/446f4765a2234a9ee3460299073ae464d5ed33e379780207142fb0e4cd55/python_libsbml-5.16.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,567   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/ba/9a767f6096ff0197dca77402843dcdcaf9c662b04c1d7e477c04e3e4bd59/python_libsbml-5.16.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,567   Found link https://files.pythonhosted.org/packages/cc/44/5f3504d6f5c10e6e877d51ff280f2f4ed4effbc56f59d5b935881bed9e65/python-libsbml-5.17.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.17.0
2023-09-08T15:59:29,568   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/a7/28edd28158047ab216aa84f4c61327c6e9e10a48f4a298e54c338bb39793/python_libsbml-5.17.0-cp27-cp27m-macosx_10_13_intel.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,569   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/7d/a50f925a7c1818b571504bcc15c0f35e2cf8f57cd86910d940a44751b72d/python_libsbml-5.17.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,570   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c6/d0/eaff034b982e9ef320b76508bbfc44c4c5e7dfdc981239f58541e99e5c50/python_libsbml-5.17.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,570   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/d7/012cc44e86c4b7f744adee95a792fae1c844a3bf3de7faee6070e959ae47/python_libsbml-5.17.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,570   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/88/66/5d5c65d09e62b89f1065f5d81d336fc771ec266c75726ec216c4151ef8e8/python_libsbml-5.17.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,571   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bf/a2/0c7587ac0fa71cb8aceadb176dfb4bb05e280cfed3333a17103ee1b5a93f/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,571   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/af/c238834439b74097a666b0010b8b3dddae25fcb16548722280ec82768d80/python_libsbml-5.17.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,572   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/a8/7a4e76cb99a55ea7f0748ea8f34b95a220f94ec60dd270c56a6c78c3d5a3/python_libsbml-5.17.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,572   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/64/ab52b2f32f3d84ec7c0c1f03cc784d5759d08d4fc45efbd59c6e3598c48d/python_libsbml-5.17.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,573   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/ed/aa7cd1ce3f2fa781a7673ce78992a302ea5c93a19fc8fe0daf4f3cdb372a/python_libsbml-5.17.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,574   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/42/96/2663389714d453e7b647b0a9e18be920f680565afa2b696865323976329b/python_libsbml-5.17.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,574   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/04/a7d723c5e8ef5b6b57565b1e9c981bed54ca34e50e14659951a2829dac5f/python_libsbml-5.17.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,575   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/ba/579ee9fd021d8f5f2a9bdc202e8dd73750832b2f00e90b4202df785303c6/python_libsbml-5.17.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,576   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/73/63/94ccf944ab23da89603374c9eac3ee3749dcb848434b9b3bfb2c8559a423/python_libsbml-5.17.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,576   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/27/b23129abce7107a4539c226370955eaa509cccdea9f8c161e69adda8d70e/python_libsbml-5.17.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,577   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f5/76/0eb67aaaefe03dff4658fb2bff697b1b02d5f77ef04b69e33e777545d661/python_libsbml-5.17.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,578   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cb/f5/a559c2a90e60bb908137f032ee8d8c95b4f423afb3af9f6009ba7d07d515/python_libsbml-5.17.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,578   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/58/54bd9fd67010a591fa2cf783eb0e2ae717ccea4f935f1d38f3270276b0c1/python_libsbml-5.17.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,579   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/be/8b582dedb381f8797805d8fda81d366cc4c07c32b7d93b76679645d7105b/python_libsbml-5.17.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,579   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/55/038b2e52be029f2285f7029979ab19881e554759bd5d38741099b48c9b74/python_libsbml-5.17.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,579   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f3/90/9696b48374c3e344dae1a2c4b437be9f77d8bee521b6276e127af564fd5c/python_libsbml-5.17.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,580   Found link https://files.pythonhosted.org/packages/14/21/70fa01b5df02ab4969718e8508feb5bc1ff5d63d73db684d1877ae764f24/python-libsbml-5.18.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.18.0
2023-09-08T15:59:29,581   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/f5/51d300d6459803ef1a04ac2f0fb7ca838fec5ac7c903c39dfc1c0abd14dd/python_libsbml-5.18.0-cp27-cp27m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,581   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/2d/3f6b7de38e3d4762448a5067bc98e2f066f5d2f3988bc6ee39b1bba1e175/python_libsbml-5.18.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,582   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/6f/c8e6016d9620714a4c7c168903daa244e83e81a9bc6cd18ba99debcdef1d/python_libsbml-5.18.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,582   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/18/5f/5d1be29bb5cce30859092c108719dd6606db5944a726ad8b965a6adc0794/python_libsbml-5.18.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,583   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/04/41/ce698fe8efad76b97cc3f1722a05705b703a87596416a39cc982c4c59b19/python_libsbml-5.18.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,584   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/e2/a8c618f6659229cb70d42a0f79f9f99c132d5dfbf91779ce64968a44aa52/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,584   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/77/40f41bb7629ce0a7acdabc3f77cdbc2de79971e1da95dab2338078c106f0/python_libsbml-5.18.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,585   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/24/a633a82fb17c0d5b68574f3a61c50c53a2941195c20959e8702b32747b35/python_libsbml-5.18.0-cp33-cp33m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,585   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/60/7edc876efe3b80d59e14f398550a931a5ce903ab6ef7b37be2b26c78fbc1/python_libsbml-5.18.0-cp33-cp33m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,586   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/c1/2d6cc7e0d5bf2b818bcc88ae67bd9d8b0b2f3f15211d039d1a0ca63110d9/python_libsbml-5.18.0-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,587   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/89/51/638f5190c1253799d0ea416511e67525e68fb01556a1b41d6154753d3f48/python_libsbml-5.18.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,587   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/70/8e/ccf5ab56ec657e92f2221563854f3d3aa06d45d6a949fa74c47bfcea5c23/python_libsbml-5.18.0-cp34-cp34m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,588   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/df/f8da72dfc60d520a7fa57c4e5138ada18140698949d37fc1f9c6cef4bdc8/python_libsbml-5.18.0-cp34-cp34m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,588   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/ed/ab42bc043c5dba2c742c6f30e4d783e31385c74382fedd8f3f070920d31d/python_libsbml-5.18.0-cp35-cp35m-macosx_10_6_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,589   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/2f/402eeaea4884cfa53d43239bee3d398410c20cc7c5e31e97da0d598822a9/python_libsbml-5.18.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,589   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8b/fc/a4aa0b138619c61176b9e064afc449090581c5545649468e31d1fcab9011/python_libsbml-5.18.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,590   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/65/8714c64079a6ae5250433e3946438090e1b2e6e654c40dd251227052a8c5/python_libsbml-5.18.0-cp35-cp35m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,591   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/15/a3d597eda73485814999dd7708f3670b2905c45994c322d80033fd59055d/python_libsbml-5.18.0-cp35-cp35m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,591   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/e3/f86f7c03836ff5a1e9aaa6ff6053c5de80736d405cd6c5dadbb4ce8195a7/python_libsbml-5.18.0-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,592   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a1/a5/c8092df04d857361976dca2526ffb7d3c848d1d57eb0ecd5e60d76d30c7c/python_libsbml-5.18.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,593   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/74/3dd353a017ba970e6c8d152d8c9ffa11e3d7b168b5057c5ea64f8b04b4ec/python_libsbml-5.18.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,593   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/85/8a/a91c9169e12db64df60fe09b552650f433356f8ad1d7cdeba2080a507d7d/python_libsbml-5.18.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,594   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/d9/2c01b5c3fdf680664ee31d55af8b28bc9619baa2334eb107e3dc05d06710/python_libsbml-5.18.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,595   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/76/5b2a2f2a1f1f8bdbf32594f0c5f18c9da7c34c4be891e464f82d1c6d74dc/python_libsbml-5.18.0-cp37-cp37m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,595   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/aa/70330d280f440819bfaf0e5b7a06f8fb400d9dda0b8e5ef89c0d1bac4afb/python_libsbml-5.18.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,596   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/1a/88c8f9d665a5388b27ba80f75d282678cab7a3d745096f0e986f4e277235/python_libsbml-5.18.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,596   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/a1/05d0bac032f09360d7b0a39ff9bbb52d9e40b0e9d9fe3b565d4ae49a52ed/python_libsbml-5.18.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,597   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/08/70/8aff463301c7348841e12360b03e1831b67b53c1b5dc8e9311de45b8a338/python_libsbml-5.18.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,597   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/a0/056809882950a731d13ee1826cf6289d2aa7fd4d49fa305474d68356c7cd/python_libsbml-5.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,598   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/f7/1eb4924400a5ac0f9f7677d1cab6e77a11e757b57028d79836cbaf0a5f80/python_libsbml-5.18.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,598   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/28/763edac345e9973b4c4dbb2a79bef5e8fbc40f0cc445bc125979abb69b5f/python_libsbml-5.18.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,599   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/76/e6/302f9a3e5ff2544d88608931e3f8a7184f0d6223637ceaf77ae672f04f16/python_libsbml-5.18.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,600   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/4b/dc1f201b02a642ac833b28cb4cd3f4e2604919dee21f54a4382cb1ff740a/python_libsbml-5.18.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,600   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/a2/dc67e3fd95354835fa355fca8a22b501f3ec25c8670a545472565cfed75e/python_libsbml-5.18.3-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,601   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/3e/ea2d3532eaf8f405080eaec29057288253354875918cc9cea4746f13d8af/python_libsbml-5.18.3-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,601   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/1b/9e9fc9f090c81c33c89906c681bfb70a4f605975cb09853e7b96d10438ea/python_libsbml-5.18.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,602   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/be/6f6bfbd153e4b3ccb32043897bf67d4639aaf4fbfbfa6b61237b473611bb/python_libsbml-5.18.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,603   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/48/63180cf7dd83e2a9f5638e5e53fc28ea8f8ae644043352910b62110e9a3a/python_libsbml-5.18.3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,603   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/9833edfa1b021bd820fbe5dfb466600d189356d3036e750a02d9cf702d13/python_libsbml-5.18.3-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,604   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/31/70df1aba4b08b1f2145df12ecdcedb35a7cc1320fbe299104076e157af87/python_libsbml-5.18.3-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,604   Found link https://files.pythonhosted.org/packages/0f/cd/fa18e8849e1572416bebd8898ee220bdbed05ee919fde4f58524bc3f430e/python-libsbml-5.19.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.0
2023-09-08T15:59:29,605   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/0e/99426078e6c78edffe37cd1a02d094b2b0bea32d1c0618c3b1273c943547/python_libsbml-5.19.0-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,605   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fb/ab/5e46521937e8f098027a9f43acbfd5113804f1fba91c1fb71b9245201918/python_libsbml-5.19.0-cp27-cp27m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,606   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/62/0ab16ad3702247ed463854e3d5d111bfef4a9f3dea18fa35ec1e8bdc8048/python_libsbml-5.19.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,606   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b7/da/c94d02574beabe34a2e315206ef8e8d91aa08f45a6cb74ea2ac690744904/python_libsbml-5.19.0-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,607   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/2b/f94d5a10db2d620fb6ab67820396fcaccda4e75cdf6471beab3352190f5c/python_libsbml-5.19.0-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,608   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/dd/26631dfad84a915b458968dea0d2a737bfb457d6212be241f144b521c8fb/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,608   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/61/41a4c209b6b0796d437d8523f1c4bd266c5f6c26fce862d2f283968f8572/python_libsbml-5.19.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,609   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/59/38/be06e4060ca18d6b644f29400afad0c5067b18573f43d4d519fbe10dd6a3/python_libsbml-5.19.0-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,610   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e3/9a/73f9ce865a35b3e1ed73428d4ea4124d4e994807e7e88ce287c4c4f0e6ef/python_libsbml-5.19.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,610   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/5f/9bdc9705a856607b1c27fba767c32bac4303401439f2a39e6e1971e6474d/python_libsbml-5.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,611   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/f3/f050b18a86d41169f72dd2c2680505b94cca974d79dc417ff1292c8a40dc/python_libsbml-5.19.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,612   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/22/d53e0178cdf061544f39fbf07b5887e7a58e564a1fb9b2db09d11205b213/python_libsbml-5.19.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,612   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/fe/2a79447408262805d73ac12864bc9b6d0c939ca7af179b398b701e8b79e2/python_libsbml-5.19.0-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,613   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/9f/a18fa86b5e12e4127aa4e4ca52bfb4d812b63928efc9655fb27114ea824b/python_libsbml-5.19.0-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,613   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/1e/125f85d68a566d4e0f14fbb593087d91e96b222afb96af657548c5a741b7/python_libsbml-5.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,614   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/ef/33b05ebe945f4523c95dbad7b75a5002d0107260e2e39d384098821cb1c4/python_libsbml-5.19.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,614   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/93/13/2df22b77ee9125381a00aa4dc63de1776bb84d773655d2770416e81416cd/python_libsbml-5.19.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,615   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/55/9c334f524c9ec8503178cc4ef130eca2dbc484d7366ca5233dac42e88c00/python_libsbml-5.19.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,615   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/5c/b92c0605cdc4a19b2faf53c4f37c8641345de2cd0174ec78e660731c9253/python_libsbml-5.19.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,616   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7f/7d/2c744c42bb29864b98059424aea8c32bc4d66ab2df2e012d1fdc9f98c235/python_libsbml-5.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,617   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/03/571906e80f2201c279900acb932da1aa236ddd1c27f763a95267dd36c3e2/python_libsbml-5.19.0-cp38-cp38-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,617   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/de/c849e1160a030aef4e1d45890dea6e29ea84fae30e3394ec3431322f5e3c/python_libsbml-5.19.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,618   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/ef/9bab928ec4c168cf95532b33322c96a7834c93f7036243160ed227bd0b85/python_libsbml-5.19.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,619   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/a1/9c4bc3e9331fad827a637fb9fe00bbb26756a986ef6df325aa3341f867b9/python_libsbml-5.19.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,619   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f1/98/3d90555f2f7e5a287539f86fc69c9a00e4a91e48a886e76125e80deb7aee/python_libsbml-5.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,620   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/d9/539cee09033586fce36c95601b1aa5afbd598e803c1d4d2ab6aefe01c0fa/python_libsbml-5.19.0-cp39-cp39-manylinux1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,621   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/a7/66763f5081f77cb24d5769d6cf2a0252d5215023931f18fd9c4026369856/python_libsbml-5.19.0-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,621   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fc/f5/97dd835c90493f3e971a155c454e267e44da68d9306b97bd71488f472538/python_libsbml-5.19.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,622   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/63/681a71d3bad7d9b4a6e34d3f19ad3b86d8892ab01e85a3dbfce86a74ded2/python_libsbml-5.19.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,622   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1e/a8/180a55f8707186a5a3dcbd777600654bcb0691b58d22f9db0ac195ea9f5d/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,623   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/d9/8955c3a78378bcd395f1587b076fbd23456f6d0ceb8c68f8c40941abb270/python_libsbml-5.19.1-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,623   Found link https://files.pythonhosted.org/packages/a6/95/12c2e2d897c37689c1a46b38f07615a303dd0641589faf741185ed9807a0/python-libsbml-5.19.2.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.2
2023-09-08T15:59:29,624   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/e6/12996980cfae0823cede7ab4779f9c3b3d7cb0206446805004f20932d8c1/python_libsbml-5.19.2-cp27-cp27m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,625   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/76/59f6f1747fa64eafd39076cfb9b48654b93faa7cd17baf26d3a03fb8c280/python_libsbml-5.19.2-cp27-cp27m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,625   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/74/0065d7743b0e79d239e2f9a8b933c47f6b6421af25e65c76aa2f06684b42/python_libsbml-5.19.2-cp27-cp27m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,626   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/56/c097f23b818030cd380d32df4193a44b65681d4877914730db3b6a149fdc/python_libsbml-5.19.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,626   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/3b/c3b7d93b6a20b91996b0bf3de8cbb6fab0f813bbfb1f5bf1c843d9bdd9f6/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,627   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/e7/c1711d34cf851ce33e5d25ba7fecb476c20503f2404f76dccd027990947e/python_libsbml-5.19.2-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,628   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/dc/541f8d1bbc079514cad521873df058962e01c55aeee1c003b00fba32d2eb/python_libsbml-5.19.2-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,629   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4c/4a/4b0c1c1ab48ea2a4459355141af2d2a3c68a19ecd92340962a126efab2df/python_libsbml-5.19.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,629   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ff/5a5879babad15f84d8ec1ff155bcba6f4738441b5d108b307d57b54e5bcd/python_libsbml-5.19.2-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,630   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/52/0c/b1ad2c31c06a28b94b01cc58cebfd4e278ecc1ca0195201a79cdeb431ae3/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,630   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/6a/aa24bf5071f151fc0ccabe5010370602c5d191e89ab9d24d516c1eae3742/python_libsbml-5.19.2-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,631   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/95/e7/be9ace64152b9e08513a34b3c82f5bdf03f097043f8a02d4b63ccb7fee58/python_libsbml-5.19.2-cp36-cp36m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,631   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f7/27/4ce340fb4ac8f852c06589b524b69a15cd25d2d48069236f416cfe96df2c/python_libsbml-5.19.2-cp36-cp36m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,632   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/2b/2cbc149aa8014e0a0d2e5ebcc31fcb23e6b95e27a899f44bfee154a1dcd3/python_libsbml-5.19.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,632   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/5d/a96e58f7e8f890ff26fa26318fbcc002e6e6719d5529560f59ff006f1519/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,633   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ab/a5/c3ffea492fb3b36e527cfaf6aa8fbb843907cd84378f2e2b575d44b250a9/python_libsbml-5.19.2-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,633   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/25/5f/4d8bc29368ba4218f84b6b6831042204e9d2386a976f43ef8c749b811e8e/python_libsbml-5.19.2-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,634   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/f0/bebff94f32f8bfa357d8e1cc4b5fb4fe0bae9520d682397e04e416609c33/python_libsbml-5.19.2-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,634   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/44/dc84e7bb3d9b2c2d38c5745758ae1597b8287fd7491223331af0c1bb805e/python_libsbml-5.19.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,635   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/a5/1f7dc58a224ff7ae6f3affc479a6ec9974db7daad059a79668757314b2f5/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,636   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/3d/f63c0b5cf225f870441d0d9221abf7815cf2ea7c23ac635337d3f1acab45/python_libsbml-5.19.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,636   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/af/605486792106ee5335095c0ec1ad1e3aaf3f1c2b38ea00e8f64d35555fa3/python_libsbml-5.19.2-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,637   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/1a/097061aecd5377716bff3d2da2c9845600a2628828d3fb25ec3d6cb567a0/python_libsbml-5.19.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,637   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/78/ab/d314f8380f29d7f1657f6be92769b6e26c93b0670877e9301b3415a0a441/python_libsbml-5.19.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,638   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/01/c6/d94b24f6161fc2a6529e202ff28e9573062a22f598962c2ac609af095966/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,638   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f0/d3/4170fa7103066785784f2bfdfdb148c88c6c1eaa517be0146e44663fa0f9/python_libsbml-5.19.2-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,639   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/a0/ede2ac8d193d176b0d4ae86d9ab2f13d1f27b065f01e798937d9e99a2be8/python_libsbml-5.19.2-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,639   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/42/254336659aa307a86dee61e88ecd1d0e4304bc0d813081b63da526fff056/python_libsbml-5.19.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,640   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/f8/c8646d69a09c54c1d4e5ecd9d9a848e12386b855b56345e37ece54d6506e/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,641   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/3a/eaa0ff1d025285bcd29be471573a60adefb86f47946ebb093a47b9976b73/python_libsbml-5.19.2-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,641   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/5e/e959c981a685c856d320863bea756f69122baf1549ce8c13b20465bbc79f/python_libsbml-5.19.3-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,642   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/90/1ad75e159ae4737163371556637fe37462cc3cdd2124df01f4984c60de1e/python_libsbml-5.19.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,642   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/5e/cb6b82b372841982b0f47b424e0c2b20423b397e19942848af0c3ef761bd/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,643   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b6/c7/2fb9916de9d6b2b9024a950bf9ee252f90e4c3561a2c0604ea3f3a164ad6/python_libsbml-5.19.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,644   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/df137d5afd04260ec7bb11fa109326b87d52722956e7e39fff21f76667cd/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,644   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/00/8d3969e8becbd2b47d17c9211e4956b20f23c433fb2a4b769d6f20b18f97/python_libsbml-5.19.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,645   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fd/65/c26dbd2381adba56509782cf4969672d39ae9f73b8819508207847ab125f/python_libsbml-5.19.3-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,645   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9b/a2/1311f0cb379c30b552225409b492607830513703e148bfe14e6bbb82780b/python_libsbml-5.19.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,646   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/3e/899a7c9903022624f23f727594923656055c3447fb46725bae82ccb6a167/python_libsbml-5.19.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,646   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/07/0d/aa5ae63712d9e8b5b1d7fcf3fe401ddd2410cefe1d6913874a32a70dea5f/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,647   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/fe/08b00b819027dee3e449f0926e97dbd7bae16c7918efa17319528e02a859/python_libsbml-5.19.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,647   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/e2/72780306d952771c2144e456158c87443ff41691684702be926fc5bf9a81/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,648   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/1d/bfe9a90b3cc90989cd0026881c91f212b0b99e11439e74fdd33de2d7c440/python_libsbml-5.19.3-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,649   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/69/8705b2ffcabc8a725d87298c058190d42b5db52eb8aaaaa5af3a3305de1e/python_libsbml-5.19.3-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,649   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0d/02/27f20c50fa0d65e5e81b0aa9eff36bd8847fed1a8d5f9420c576384fb901/python_libsbml-5.19.3-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,650   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/e7/06eddf48b7769e76f4e2b98e10f81ce249204673564150dc6caf17a7e5cc/python_libsbml-5.19.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,651   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/40/2ad013c07f626d804a1dcecc8a51f05b990a5b3fd618dbe4e662febcbce0/python_libsbml-5.19.3-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,651   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/5b/7c740036240b838acfffffb91e29807ba5daa5d5df9ab8bde4857635cff8/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,652   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/d4/854e2fe14fd4f14aacc57f87bf96e272997339c44b3dba2805575a743953/python_libsbml-5.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,652   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4e/3f/530a4dd5e434030deb1d211d53596809238c9e74036e43bb77e33ca5d4dd/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,653   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/a5/623ea4311f58b273e02a625b915ebe6a8cae2026b92fada2344a85fc79ea/python_libsbml-5.19.3-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,653   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/55/13/1c3f256fd801770959d2aa14ff2f09248d861bfb0a48961a7140c1bec23e/python_libsbml-5.19.3-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,654   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/06/142f5127f5a8cd198675ccad9ea3a196aa7b0fdb3248d66635d5af19959f/python_libsbml-5.19.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,654   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/43/f5/4ee679d361431afb6693d4fe34936bef10a1d0bf2d915038eaf654fadcec/python_libsbml-5.19.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,655   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/c1/85a320f6e77803ed37e39491cdd974ec750b7fbbb38fd127ce2b0e2bd45b/python_libsbml-5.19.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,655   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/65/098d2ef976e3f654e30283a3b2a7e201d37763c83f6238243534402f6198/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,656   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/44/e09d684b97ba920c50dacc959d1e65c28c535f0eb01e06b0d5d9db34d5fb/python_libsbml-5.19.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,657   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/89/2127aceb97951399d9bff4ebf9a836311c42c495c5df1da29374f8fab64c/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,657   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/06/2c/46e232b0dab877df6f741c19611f3de35808ddfefac1043c5852cdd856fa/python_libsbml-5.19.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,658   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a3/56/41cdcd4d3d4a8c11a6bec29713984468e49f7370e480198bc1eac3341adf/python_libsbml-5.19.3-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,658   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/40/70/6fb8d68286a572339a66ef13aa8cbd4c2ef155310a65611ba6c81d603131/python_libsbml-5.19.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,659   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a4/bd/89b857f88850e1ff9b7abc61e4343d5921499ad2efe79b7fddabec405593/python_libsbml-5.19.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,660   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/c0/43b3a77df22f5b3c07e5848fd0e6dc0c4c1e410a05867241b1015a0fe709/python_libsbml-5.19.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,660   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b9/e0/7f2f0332ad871fe6236bf50666dff959344e4444514a4304c3f048b73e9f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,660   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a1/552c14013b10cbdde4017ca1c207320c8fda611d275a7fe42843c3d3c22f/python_libsbml-5.19.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,661   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/21/a3/da39ec5a005bb927640a1549e3a42b2cde7a5b75ab8aa6531f21691dd3ad/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,661   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/03/7124c586e4b4a09cb5774b7b9cc0764caf65a1bb4276073f7c4129670007/python_libsbml-5.19.4-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,662   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a2/df/02214a6df1cd04a3b7570fc19593c155069d558cdded4e7114ab9dffd7c1/python_libsbml-5.19.4-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,663   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/20/a8/412d1f3b04c9e340a30d0db08759f79ecdcddf3c579932f6f77973cceb70/python_libsbml-5.19.4-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,663   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c7/bb/1349c3c7cbb0744b27d6490d0aab4625c9968497a9dea7dc5cce740fe62b/python_libsbml-5.19.4-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,664   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/82/d3e4dc7b7a7de11f003221f262fc3650e805ddeb9de201e4d8f2bef00a4c/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,664   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8d/5a/1d36ed8315325a6589fc63648885da93802559d2fa952bfb031234347cfb/python_libsbml-5.19.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,665   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c0/03/bad815e14a27ccde0b3a85fe62b4eecbe628afda1871fc6509a9a98db4f8/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,665   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bb/ca/e15253f460ce1819a00f8fe35a10b9acde9a7ba9d14765c999f897ac2466/python_libsbml-5.19.4-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,666   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2a/ba/24a6d7ccb3170ad903c766fdef43a7926290a4e98c3409483f38b98d5fb1/python_libsbml-5.19.4-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,667   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9c/da/8460529afbc423aabb0a653dc8938205ce69142850692c1917752fcf4b40/python_libsbml-5.19.4-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,667   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/29/07/1601b8525286f40bef350e07b88333085c852c2c105c265d8b683ff23676/python_libsbml-5.19.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,668   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2b/88/6a381abadb26f4c19ed45f1320ea67ff162ae15c53499e7f604b01a1bf0b/python_libsbml-5.19.4-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,668   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/94/a492278b2590baa1fe1b4801d2f94b22cf72f1ca8ac75882f3378aecd862/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,669   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/4f/fee55bec001ad90282867a1cae53a715d9f547f592dfed85c495e6ed47e3/python_libsbml-5.19.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,669   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ab/1577d8aff105aa373e6239811a4829d3a48485e1f8a82b06032c36e9be92/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,670   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/35/1eaaace39eac44b7bbaf1bd9270984e17aa5784bf66a087bb2cb1a89894a/python_libsbml-5.19.4-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,670   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/9a/830dbdbbe8c83653de76c56f63d498a837237f7091e0f8c42a4fb003ab37/python_libsbml-5.19.4-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,671   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/48/69b530e9eb25332bc10729e894f78ab99e4dee789fcf8ba08e5db9ff6f90/python_libsbml-5.19.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,672   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/97/9c/30b27f877ac5ca8e4bee139307833db5f3286d4381c358aba9ac45d047cf/python_libsbml-5.19.4-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,672   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/c7/ddc3346eb6e5de1294570d255bb86cc13b6889d3bb737cbfbdabb6c5e675/python_libsbml-5.19.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,673   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/83/2e/40ff419d9ad0e3d57ba6d056df3f4725224f95f04fd6b768f031d2ebc09d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,673   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/35/91f9d91e27d9c803cbef04e2100d5cebc3d1d5597d6b47a0eb1fcc36853d/python_libsbml-5.19.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,674   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/05/ef/18a6a98ca7e9093c17e0afa485f209a2cfc10cd0a96fa2d5d58f1dba6e7f/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,675   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/a4/f2e9aa674c549eaa9660454c7605cb976f22959ac56078448a470642a252/python_libsbml-5.19.4-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,675   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/1f/978ddababaa64df3c13ae45de771bfbdb77a1367ff7c7d673a922dd86cd0/python_libsbml-5.19.4-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,676   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a5/95/b1895a9a6fa3518db22cd4a7eef27a2f7a29fc83db2566851ca46e0130d0/python_libsbml-5.19.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,676   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/e4/bc31775349d7e2063c18d3f27bae25b62dd4ff7af06244122480c478649c/python_libsbml-5.19.5-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,677   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/c8/22b0aceeb1c07e40b4fe9bd40e2c3b791a36efbc4393295dbf18f8266288/python_libsbml-5.19.5-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,677   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/e8/ffe5988762cdca62092d275997ceb5a525e6ae3209468a6ef86772a1e2ac/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,678   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/5a/bb74634c1480016359a7513aaaba59a7f286476005cb8ed19a54512d9dc5/python_libsbml-5.19.5-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,678   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6a/52/aba08bc3bceb6ad79b77e8507d787dc343af4f9697488dac9ddc7151bdc5/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,679   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/80/270cb90c9db0cc1d9ba40680a8b414475f96119ceaf34ccc1c1f85d7f09c/python_libsbml-5.19.5-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,679   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/db/11/bfacbafa5182b91d0faf663c25948d9fd06aeca26a633e523ca7a985b3d7/python_libsbml-5.19.5-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,680   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/28/88/efa078f8f4540163e6053cc2b1fdddb828c60d187cab2ea3d7e1e2739106/python_libsbml-5.19.5-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,680   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/67/a72357446908a7f40c2abae90402d8489288f8259aa60783f6e5a85d923c/python_libsbml-5.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,681   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/d6/649951b6b4a3e34724c7fb3f48ad8ac813469ef37a23dbd1b2c0eb99eef1/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,681   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/64/82/0c06f6f6e0b1cb3ac1c317dec029624bf423b2f37b72a65b9806cdc62a84/python_libsbml-5.19.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,682   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/12/61/1adb763206a9285a3cba8133f076e230eb7259c69f43653c659df7e269bb/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,683   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c2/27/75aa180b230b3c8c17067c5493159b67a0514c685b9cf671bc33a2df9f7b/python_libsbml-5.19.5-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,683   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/32/b0/feb0df2cb277dd5cd63404715a1501ffc441aad9318cdbd49575949d91a9/python_libsbml-5.19.5-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,684   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/60/b9f74716169220f1fdf0b7bb1fd40e41e9070d33330fa17ff22378fd9829/python_libsbml-5.19.5-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,684   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/aa/9e/51979773532e41f88ae789a4d45e76b18333fe81b52859a32c1bc3935284/python_libsbml-5.19.5-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,685   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c8/c1/dde4f8f3b3cd1eb9ccded62b746f124113277fab60d0a696c1021939d807/python_libsbml-5.19.5-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,685   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ca/0e/0d161d756d8123db21aeed37cfd046e34dffeafa171234568dfa150927dd/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,686   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5b/33/a177b2cb973afce627b3eb15a503d2c4f37ce2732cbb444edfa9ad4a50fb/python_libsbml-5.19.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,686   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/99/3bac74fd6bd9139a61314dad36e970386013da13cb2f55a43173fef76e42/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,687   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/7b/59194b5ebef79d3dcbfc36c39d80fe06aaa39f1cdea2da1638cb2b1b67ea/python_libsbml-5.19.5-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,688   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d4/5b/63d4c126280d653c3313634390de8a84fa73fb3c8d913c359c4784c7fb7b/python_libsbml-5.19.5-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,688   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/c2/86792f15ae94f809fb013f37ff68da8b6b420cd62d2330017beda98a93bb/python_libsbml-5.19.5-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,689   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e5/01/27f83634211763364d6b9fa4bed77fe7708e94f90615d0cd05c62c33cb4d/python_libsbml-5.19.5-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,689   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/74/b345d46746efb4e0aa1cbadae64759e3a7ee34ea16da619be42f5acf9042/python_libsbml-5.19.5-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,690   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8c/fb/5dc24c00b1f78c2ae350c9f80f0b31d3d90d5f43cd7a8d7ad22705314c02/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,691   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/df/a7/4eaada74ece99eb27a364a1309be6786312813e3d4508ce1f2436646679a/python_libsbml-5.19.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,691   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/6a/64470c168d9d332c31ea03aa21ce42b6dbdd47cac5a7800fe3285a47b2d4/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,692   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/7a/489dfc897d1c06d1f20a413f5d9ae89148c404721b08cd748f8b08809ed8/python_libsbml-5.19.5-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,692   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c1/081c79fd13211fcbcbcdb2d06cbc842ff982a06c57d9757485c2f56d8485/python_libsbml-5.19.5-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,692   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b1/62/a427874646ac97dacfd7eeaaadbc68488aeec3c58449adba8b3989fdc44d/python_libsbml-5.19.5-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,693   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/98/b5/41a665eaac2419cbcb2f0b392fecf6016ee97226bd01dd6a99ad45f195a0/python_libsbml-5.19.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,693   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/17/96/4ef8b9da18c1c67712d9c281961d8447029eb990362e315ffd86afc57253/python_libsbml-5.19.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,694   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/23/68/5db630c5ff65f0444a77174284bdc0072d86d97ff4718c9baec4dbde941f/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,694   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/1d/5b8d0cc4ad8a5baf0e08911d37af6170b4ae84581bfefbee38cd148755cb/python_libsbml-5.19.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,695   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/0c/1f87dcd153bf9dc5cff00a507dbce54acb0016be92afdfcb521ba294b774/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,696   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/bd/54/b844a36aa07245505382de2a664b49cc117724e41aa32ff49f948be96435/python_libsbml-5.19.6-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,696   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/f6/728a0ba39b85fcd5482cebc7e72a5c9aa82ffc4d3cf5c3f2106122421597/python_libsbml-5.19.6-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,697   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/91/fcd095d6ae1d4192a0b960a20525e5d417135a8f01fb8599912c0e70b184/python_libsbml-5.19.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,698   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cc/d9/2a4cfa9ee111c60b6f7f1ca914e04d6c04111169bd770bd48c665bb1ade9/python_libsbml-5.19.6-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,698   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0e/15/e4fc49efce1cc3e86649683b70a8449a5884d0d7a6972a0277e6bb448658/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,698   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3c/7e/a6422f95fb8fedb7bb1830fc50c7ed2fd9c7dca0c429cadbfb14ca429235/python_libsbml-5.19.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,699   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8e/90/e622c6d24b7801694ed0b25c871f80b9c275e2b80ee97d9f6abf90bf9e80/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,699   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/72/2b/0fae3e4c78536eba8302ae58539349fa0744cb2630df209724d177c73775/python_libsbml-5.19.6-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,700   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/50/9bc801ac1b16523c316d34a13eaad019865f4ad3e3ad56dc82c9e3fc157d/python_libsbml-5.19.6-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,700   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/bf/1150fab1285aa3872ed1994c5ef92ae5fb97493b93b40dde25b3a62d08de/python_libsbml-5.19.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,701   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/51/d95ac5d9a0d4a6c00cfdb9fd1eaa4081f76279fee7846059daf5abe92d90/python_libsbml-5.19.6-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,702   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cd/3d/d0f76a9f74bf0bdda229a27cd7eb973c9d0cafa56436eae24b9f4124d593/python_libsbml-5.19.6-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,702   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1f/3b/d799653d38d4a230855719aa70728c898dccd65c1de5ceea3589d150d6ae/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,703   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/8a/8c/e53bef5d741ef4c2864754556f8fc6ed7efa538ef08e1fa262f8fd86f904/python_libsbml-5.19.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,703   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e9/5c/c16e3c3d37d14596cfbc61e624f8594f0df818658ab1cb614d5b9b2846e6/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,704   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/09/49/f1f76d3d8fbc1717942e02325062122e28275096a0c71e355b40e115321e/python_libsbml-5.19.6-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,705   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d0/b2/ed2a3944c9d76ab65c73371a048c1209459ee7603a2b32d36bcddfb3d950/python_libsbml-5.19.6-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,705   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5e/03/3cb67e0e22698c772f8af8f2acc5bc9134cd6faba4fd0b522b3405bfdedd/python_libsbml-5.19.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,706   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/5d/0d2769f6047996986a0cda532918a28f02fe3f2474f5b08f8d3f6f406762/python_libsbml-5.19.6-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,706   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c9/24/8a67d0e98ecde556c42bdba7e7780dc353fca5821895d6b35dd179bb6e6c/python_libsbml-5.19.6-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,707   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/89/aaa4a24b921ef7076bce5c34a6cbb9dcab59104618f27d3f1dba144a0e70/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,707   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/cf/9f/33736e0cb06e49da12af8f93bb920e580e3c255b88b8170c81eb05f1edf9/python_libsbml-5.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,708   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/a9/2d5be892f980ca7c321042d4e4a08d4a67c2b13cc9d7fa85fae7d8adeec3/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,708   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2d/d9/e841cae41218299dc6cbe8dcb7af9b6180bf8dd127789c412d38bcbd92f4/python_libsbml-5.19.6-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,709   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/31/97/e2ba3a40773a371f2a0771e5bbe03351504b9bca49b3d99ae2b4d42927d2/python_libsbml-5.19.6-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,710   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e0/0e/5c8c541651fd376513d6d0c0c2c8d78b582b2e8d0c51730fc1d658df64a3/python_libsbml-5.19.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,710   Found link https://files.pythonhosted.org/packages/28/8d/e6f273e868992a189473983a16077b661c93607cfc7c0e917b4ea91bd650/python-libsbml-5.19.7.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.19.7
2023-09-08T15:59:29,711   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/d3/8148ffb8eb16030ab3de0651b3d60932758249a3b2db8ad27fe87758c24a/python_libsbml-5.19.7-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,712   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dc/5f/f6344d20df5a1b19581f3ddf8db801a6c20afe91e2202cb988759d0e66d9/python_libsbml-5.19.7-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,712   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/27/b2/452e3ff2004b5c0e82a57d34e815e84c13c006a4bd6236e08a37ec8c16fe/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,713   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/fc/df09beb88ef2e484ed1e479434ee1d7e83d597ad8e98b9bf5ae2c8a629b6/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,714   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d9/df/a6154cd7d61fa3e39d6f6e65f28c93bd7b1a593b537f6e41662ecc505399/python_libsbml-5.19.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,714   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5f/cd/9db74e686edad1bac3c77ac8a5e77f9a3ae82b21de9b3fcfdb3d75b8b9e3/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,715   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/c1/268d2a97a6d90538060832b18cee9ccd96ea2abf56246e3e9966c30a8d62/python_libsbml-5.19.7-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,715   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/02/4a/62d78b1b1e29341a0f68685524362b545e21e56ce77af6fdb73b80a8e9c9/python_libsbml-5.19.7-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,715   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/26/6304763a354fe851285fb458ef45635afb85724b997e5bc40278ecb86d84/python_libsbml-5.19.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,716   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/c1/e9/d1e57cbb516261ffed171bb82ef70b18d7b60447d521cf315bb37ea31f5d/python_libsbml-5.19.7-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,716   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9d/92/753e18c47da7aa92616f281c6269ab3864125c2c97f64776efa4e07f224e/python_libsbml-5.19.7-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,717   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/df/ca4f00bc14d0f311783454cb10ba3b04086fdcfdb015b8e363d4e34f2bc7/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,718   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/96/fc/d6e0dc67151b7076cc2c961d32a7499a1a8a008dbe20431e54290c48fd76/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,718   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/e3/c7852f21992d7d034d6c985c9cd217a9975ec3296740d37c75439da7209b/python_libsbml-5.19.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,719   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0f/3b/8f1a15c1c203a3dbe047c835b73f563ad977f1d445fdce9cf1253fad5b27/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,719   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4b/d6/1ac5e6ca2b2d7b0a5f0dc96486d1b30c6d623c30086a7ba5b02d323d6e67/python_libsbml-5.19.7-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,720   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/d3/33e18a1bdee3dba2cda999df706e65f2f6c904f2add58540c32adb0ff404/python_libsbml-5.19.7-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,720   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/26/8119f12fbd36adddc7f45ad6493fdf9c44549599686b55a84dce2b974a41/python_libsbml-5.19.7-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,721   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e4/75/d9778e6e70cbbb95656a38c63674736aa99cfdd9188a2dda55ceced2751b/python_libsbml-5.19.7-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,722   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/bf/48ebbc5789ac2d423982e061aabd1958cb9cccafcef2333f870d6ece6c9f/python_libsbml-5.19.7-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,722   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/91/86/b7bcb70a58df2cd1a7584b88b423063557ccc2cc6cbe1bb64268e6303df9/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,723   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/dd/66/057150570e9c4cbad6d1828e5044569cb9a76fbff8b76ed5db2f1d2f18d4/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,723   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/6b/47b45ba8c04f109ae762a3043585f6d9d2072f790659fe25f167f25a59e3/python_libsbml-5.19.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,724   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/49/f1/c7aa53c13d91bdf5c4dbf84978bb257b6f25cf3fbc90efe4e605eaab7655/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,724   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6d/65/35652367c6fd61896947750a4025d02de1c796478625a7a55027527e01bc/python_libsbml-5.19.7-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,725   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/65/05/59eb06ef55e6d3f6872d9757714cf7e14bc40978efbc803d9939c5738a05/python_libsbml-5.19.7-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,726   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/94/6c985505c51c88777332c988c87a250d07bb04dfddc27d59997a902e4731/python_libsbml-5.19.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,726   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/87/a2d38c77c348753305f929fc24db876a374e24750351f305ab7f40be931a/python_libsbml-5.19.7-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,727   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ae/c3/ae2a0f492011729861becebb0a56081187e023d78c9b06b484599f1035a3/python_libsbml-5.19.7-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,727   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/38/eb/4f228348e45a65ca418e4797cce79891a5e3bd9af062c7dee720ab23bf65/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,728   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d5/72/8af4a586d2b7896c916f41aebf2b8d808b9b9dd100234d72d704d7b9aaab/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,729   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/30/0a/d22c1260dabca09dc138ad19a3cd9892912b078c6695142ae60c43ba0f50/python_libsbml-5.19.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,729   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1b/bb/89a03f313f55e427a49e353f96d5cc56d647726c696532d74b18c6f3df96/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,730   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/f5/dbdf8e3c885ebe194bc9aee6bde9868bd754e9d60c8f035070cd77b7c031/python_libsbml-5.19.7-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,730   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/e7/a40a97a2f50ddcf2b31d74b8ef98f08a8423ed228356987ff4dec1f8c5f0/python_libsbml-5.19.7-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,731   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/35/fa/f9978475f961f95fb918880a7645cd27e3d45e3541976f9f04abfad2ca4f/python_libsbml-5.19.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,731   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ff/b9/c485f49172f0dde98e6d923565c8c3aac4cfae99ae9f041121280a8494ce/python_libsbml-5.19.7-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,732   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/62/48ea6e146903c93071f41ec1457de7ad4acedcd196c613a0ec485e67605a/python_libsbml-5.19.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,732   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/c5/91a63f1c09ba6f76f489b8c935b38bc7ef8bea202c6d439533ab8d5237d9/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,733   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/06/653ba5ffa749f94b621fe862e91a1964069fea83d02726615dd5fb97ea56/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,734   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/eb/bc/438f81135363102909d7302f9dfa50a5658f5ad450e1585e18181586408c/python_libsbml-5.19.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,734   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/84/b2/16f9b8c9ab363040c08b813880961f6010ebeee774ea07528ff373a9778f/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,735   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/67/fc/7a7f101a3817ab677bcbbe9150c7a609a782f8edac738a1d8f84ba21accc/python_libsbml-5.19.7-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,736   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/47/ba/fc6697b2085652c33afe79933016e8643371c85262c3045cddf9d92a124a/python_libsbml-5.19.7-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,736   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d3/4d/4f8338da2f2f0d75e6d8f477acefd5be01eb73daa49adaa30f05ee9142b9/python_libsbml-5.19.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,737   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e2/8f/d9d230553c854b772d0b4e04bb7915d9a9018519b60311f5ccc1f6819fd7/python_libsbml-5.19.7-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,738   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0c/29/c1643276c31384eefd6233b78779dc198443b6083bc896097844f1676bef/python_libsbml-5.19.7-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,738   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/f0/b3242698a34d7ecb75162c64941fee1fbe426a11e0f78c24858e28408be3/python_libsbml-5.19.7-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,738   Found link https://files.pythonhosted.org/packages/d3/88/c602d83c6cd88ddbe53d49c70cd2129fbc84b3f75b426600d14778b53e94/python-libsbml-5.20.0.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.0
2023-09-08T15:59:29,739   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/8b/e22d257ab16ac2ebea8028b49475589825e21c3048f4a67e5085842bc1ba/python_libsbml-5.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,740   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/c3/7ee84055aeed1431d8e19df9dddeb850b2c7cfd834c0355e777c0acc407b/python_libsbml-5.20.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,740   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/29/ed659dc5d112974bb91d6f9a7af1c7e1b166bccd8cf7ac0299b9c8a6c3fa/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,741   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f6/ad/32a0b3c0c1087e97b63777ac270b4ee424c0965deca2891b8f73f82013e9/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,741   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/26/8e859d7c2d2e53711071e45d214cfd76f26c3d27a0f8997b88b81a026d02/python_libsbml-5.20.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,742   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/76/4398c59abc4730b6b2b1a39f082ad7b3d451213c6c8d544cc820bb9c0077/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,742   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/bc/c8e4a5d0f55457ddbccf1ab4e474fff5ba5fd964eebbf4c04a7c63a5127d/python_libsbml-5.20.0-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,743   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/4f/9f9540572b1a17a19ae52ec8f4f939aa2576f4776171a9a28db7a8cd48ec/python_libsbml-5.20.0-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,744   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/af/73/9b09d9b1234f9bef7683b100ae3e5ef87a170b0e6ba01049c27263fb4ba3/python_libsbml-5.20.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,744   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/06/cdd44a1eb9d5733b6bbafdd2aa1343a01f6c8b0b8023828e39471cf8bb04/python_libsbml-5.20.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,745   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6b/42/6529d23e864992184e854226cb8f07ed5aaf2b3b77e897a9ca3baec9dd50/python_libsbml-5.20.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,745   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/52/63d1d275e22d95881cc7027cd79a3cc696d6b2d8a5d0119f85f4e7a27081/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,746   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d2/43/23734e4a9e4c986ec7a9c7b1e2053fc7fe9c6f0164a05f2f11e6dad3dd13/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,746   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a7/1f/8c2a44394bb2801f15965bc601086796adc7796760f765ee4ee5edbc8f28/python_libsbml-5.20.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,747   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/48/b5/0bd564fa36424930fd8e63b442452ef17a36a362621bf6dbb9205efcf825/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,747   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/69/c5/45d541b8fbd9704def6300d3e1eeebb5343d63318cf8c6e9c8d1c8c153b5/python_libsbml-5.20.0-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,748   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b3/f5/e65284e6409b06a944f25af3f743b7b5539fcea08d3f993c94f293d7d263/python_libsbml-5.20.0-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,748   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f9/39/d45f10d6375ced93ad8fc5d810ed55a643cae68609c61305c150e079a0e6/python_libsbml-5.20.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,749   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/99/3f/3399962e1713e4331c16e806571d67c21766ac8a36ba635bb9d6103a3fb9/python_libsbml-5.20.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,750   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2f/7d/c30dbe5774ab7e1f9bd35461fa00f367caa945780e5ecf13af0eb9ed233d/python_libsbml-5.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,750   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/88/88c7214bdc777c3678cdc50fa8ca6eb371374c4c220dc7e3ce63e24492ff/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,751   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/58/35/29bcf7f9e38760fd3b9a660f317b72276222690f02dd3645c9c57d361082/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,751   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3e/0e/78bb7ed3e72c102edefbdd457d06c9d725d2adcb1c512b80a77bbbf39020/python_libsbml-5.20.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,752   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/66/b8fd8408098585b7d08e30e83257308b68582ebc8f95c4947286e44f8bde/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,752   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4d/5d/96d64b16324e80d1289b47c80011791a2e939361ce4fbccc32e3a3bc3235/python_libsbml-5.20.0-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,753   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/71/d9/9eea69cef5e36b1cf9215a2fdca887b62a49f32cef71413eb32a84373954/python_libsbml-5.20.0-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,753   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/5d/3c/b33406fb70665e359e52c5a808e2d9d405b18218990d86ab72465ace31b3/python_libsbml-5.20.0-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,754   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/75/ae/0ae432ea5fdd6d6ad0cf5be1fc68bdd2df3a4ff1c5054d731f80e632db62/python_libsbml-5.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,754   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b0/9c/eeafd4591c970a6cc401f3f069e0414ab70e4a1458e825b44901d9908f64/python_libsbml-5.20.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,755   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/16/3e674ee33fddd681783d18a931e9bfe034d05793aaa6fbc4591c734838bd/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,755   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/26/78/313fb6c4603112788ba7a74d6f824896dad7f66356bcc59375d27545c39c/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,756   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6c/53/564a48bd8aa9e8e8f4c19bb8dbf1183c32c98f73ffc4e6380c7e2f28eb27/python_libsbml-5.20.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,757   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/8f/428faed45fe5a662f74a3712a37d44b5c028019e7ac4681cb55126caa2ab/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,757   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/50/cd/20df8272cfe468ac9fdbfacd1de68fcd70609046fb42d3dea750b5cb43f1/python_libsbml-5.20.0-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,758   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4a/68/1a6867af09c8f2b687b34110d1f71d8af6df61361f4f773096a06e85d4b9/python_libsbml-5.20.0-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,758   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ea/f1/91b85f4154325d66abe9fd5696c18b4cc4696c1e0a701fb2c3cf6e4e5257/python_libsbml-5.20.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,759   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/4a/eb93f59b19383c05b5c0693c1fbeb14e2c05c621b4be725419c5cd69f117/python_libsbml-5.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,760   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/6e/aaef9fc02078d390e8c1b05f9fbb4ef55ca7073ec59b3615c51e1760efeb/python_libsbml-5.20.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,760   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/74/d1/645498d59b4376fab8de98ede0a38e61071acc202efd5555faa74052aff8/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,761   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0a/42/73dba4902672921be5459ff36e9e00f50c75231396be6f87bd25978f0a94/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,761   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/44/4e/7350fe1b6d9c613b49d9975a58777a8decaab30c0d43584bad6aeb91da53/python_libsbml-5.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,762   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/d1/79/9225181af18c3e1bd15ceeaefbb0913b4516b06c9e4e651de3ed75cf3f3c/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,762   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1d/16/bf52b66d48174feb87d19fb6b1a4b69561ccb85af7313bfeb7539d018b35/python_libsbml-5.20.0-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,763   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/41/af/ac46fa8ea1d609eb972f8d1adcc404ac9cba050cc60d5f6b21bf46eedef8/python_libsbml-5.20.0-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,763   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6e/81/7dc8634405a8410eade63aca0f061c44590e000280c49ade3fbb7cd2eae5/python_libsbml-5.20.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,764   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/24/a0/fe5a0b8bdbe825b9d0c19c452a9af3aed9a3b38e95822436412219a0d557/python_libsbml-5.20.0-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,765   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/03/f8/ec6ea4d6d467e85d3836173f3d3f9f417c4622a8ea5329efaedded4d6d4a/python_libsbml-5.20.0-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,765   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/60/34/5c87cd85f4a59d55b501f611ecf614be90d5082a7b08dfb31db915513d8e/python_libsbml-5.20.0-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,766   Found link https://files.pythonhosted.org/packages/b5/9c/4e8d7b3e1535e4ca1a31e4ac5ba3efcbf254cafdbf6e0b5c4f2d264d5016/python-libsbml-5.20.1.tar.gz (from https://pypi.org/simple/python-libsbml/), version: 5.20.1
2023-09-08T15:59:29,767   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1c/f6/4b8711efb253683adc4e3626810f16749fa1a22357883fe9758bdba9c727/python_libsbml-5.20.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,767   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7a/70/5d18c7a64fcdba5f366ad4ff71eead8251f19f564cef5fea26bb2993f1f6/python_libsbml-5.20.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,768   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/36/22b94c8794d513f2a259b89dff7e231afa47c2c89032cbf96655d3f68ea6/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,769   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/da/0b/7a3d4cc2c80fbd14259896c82a15199ad88827d5862f4b7f5f88656cc803/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,769   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b5/74/8672b04fe5f0a2bed52f7ce4d69f5b7ec9729c21a7a6d2f7b3483f9244b4/python_libsbml-5.20.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,769   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/4c/21f5494f0b3b21ee51935e4cb7f8ab3b10c75f53ad73716d0010c2259a31/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,770   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/62/86/aba6fca4f75448459a6d027f708bf1ebc1a4e631af0c8d8357bc67f5ebf0/python_libsbml-5.20.1-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,770   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/e7/92/a269cb8783b47e804ceb2d079346cfbc643a3035cc5db3a09872b8343d19/python_libsbml-5.20.1-cp310-cp310-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,771   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/4f/7d/e97d0ccfea2bb7a5df34913de59a74b72be63ee05dffe9c2bd17cf97909c/python_libsbml-5.20.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,771   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/61/b5/3dc7d11f02e215d4e14fa9216bfe25674e7c7cf8afa52ab158c11422ce1f/python_libsbml-5.20.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,772   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/a9/c6/1ff92d68f69a4bab7359f18f99650329a23e12f5902343fb0c4c39ccd018/python_libsbml-5.20.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,773   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/0b/4b/306dfe2cebf7924c42d3e1d6faef4f68f6a7d82ec4e11b0778b3f7042027/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,773   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/2e/ec/8c065d816a601030928b1182d48b301a5bc53fa46ae73585775ad91dac00/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,774   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/7c/04/52b1e9e42a8bfffa1ac2afba27e4891b8ac6b2c82cceeb5b7519c94c7c1a/python_libsbml-5.20.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,774   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9e/35/01e7e4de8b93a0243cc09357dce681fefe65d9588acafde2500706cb3ab8/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,775   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/be/9c/48af1ecb360908cc6d9afd837a4048d4b90312d3f9b1565165c74323203e/python_libsbml-5.20.1-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,776   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/ba/f4906cd2c0285cd13914ceda165fc68ffc1748652814ec96742a542dd88b/python_libsbml-5.20.1-cp311-cp311-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,776   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ad/83/71641160c53e08b797614a4c1bec6cedd1972cfd69b50489d72d75afc487/python_libsbml-5.20.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,777   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/51/f8/1e36bcedd2857e886deb38ba370f19a212f4a9c7424652af63f2702b9992/python_libsbml-5.20.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,777   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/9e/a0e0ad77642fd97f94b333aa0d8b36554fb01384418444b7b432f48d539f/python_libsbml-5.20.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,778   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/de/16/eb3dcbc5741ff82280ac833d69fda24c616111690ccf6e03e8eb90a193be/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,778   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/81/dc/3e25ebfb7899b1157c7fa16f5cbe2c726b821ccfcc3e9076ea96ded053e1/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,779   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/6e/a3129de4083648b7748a483618d6bed1a1771a23346080577dbc7e9194ff/python_libsbml-5.20.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,779   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b4/e9/0b0365ad7fef385b982139db3079f80c677566978a52b187104b7306399e/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,780   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/36/b1/ca5cc1b64119f23155936980b1f8612464157befe9a1dfa6f05a123c21a6/python_libsbml-5.20.1-cp37-cp37m-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,781   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b2/d4/f6caf786e96e4fc087ae643121917e855bc156feca429ae876f0b065e436/python_libsbml-5.20.1-cp37-cp37m-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,781   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/6f/02/8e26e60c2f5a5aaa84a6988f603866fa6bd46e7514af3d9ad5c2e6f2f649/python_libsbml-5.20.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,782   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/b8/95/f25f72b255c16f9ea030768623aee054147fc21c4e5d4a459808a569d18c/python_libsbml-5.20.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,782   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/45/55/5a62f8695b9b7b281c7d653b7d171bd8f4ed4996419a739fb8c6d4e272fe/python_libsbml-5.20.1-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,783   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3a/7a/853df2fbbd83a85412faf18b8451d406c5d511640a9d699b645fde65fddd/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,784   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/3b/e2/15601701b453b737d25a1a525a7772034693ac82b1373614b0de6cb6c587/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,784   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/fe/7b/4d577582c74c0081f651504c8ba285fdee5eb83d958f1cc371f063be8681/python_libsbml-5.20.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,785   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/46/86/7b429cbf89f1984be766be635d845b1660ae0c1db7457b5a1b998db13a0f/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,785   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/ef/22/cb8e3c743f1d3477cf7c43a04f0d15aa1b94e0eb51bc13f5128ff31eb7fe/python_libsbml-5.20.1-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,786   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/14/e1/013864d0045c330fc36aa597893b81e61967020508d5faf3010532a637b7/python_libsbml-5.20.1-cp38-cp38-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,786   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/1a/b6/419b58b0d93a241f712b266cea0e4521108c06498f31b1f0572ffcaf03ba/python_libsbml-5.20.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,787   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/f4/55/d272932b1c91e34f94a375084004974e6f6420a79cd0e696143a90cf1ec9/python_libsbml-5.20.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,787   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/33/c6/e5e4eeb256d76dcffe2ee710ec78d356abb7b6ecab05d51c02f49e2ec55a/python_libsbml-5.20.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,788   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/39/87/ab48980b04bb07f07cffda604b3d538f725e3d1be080606e79bf13885bf5/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,789   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/11/ee/b4d4b6b9017d6d3dbbf8958373f7d557cb9c738739b16043caad5f43fef7/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,789   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/77/aa/3e20528b63d58f618e35a56d10216725b46d192657d5b49c2a860f4e3507/python_libsbml-5.20.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,790   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/34/ed/a6d3fed00464053e3138f0854611d8a3b286819807df3f2bb3f948d85a39/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,790   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/79/f8/10e19f7cf55a1f0b2a8355f00d645fb099e8e82c49723d1a59a89868a966/python_libsbml-5.20.1-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,791   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/13/ab/d05ea96d59a3f147d35ad967dce704f108740d7269e90bb30b12f686cb1f/python_libsbml-5.20.1-cp39-cp39-win32.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/82/fb/76625e38087d5b7a39763352b5cbdb6c4c284f4a0e813554297ce88acbad/python_libsbml-5.20.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/9f/af/6bf199cce81a6bdda711ecaa2ce4ce81ff4367f5c2206ef1930fe4fb9631/python_libsbml-5.20.1-pp37-pypy37_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,792   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/54/ac/c775ecff8e50af0721dd65311a9a4d9d22a280624d2d862774e08bced45a/python_libsbml-5.20.1-pp38-pypy38_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,793   Skipping link: No binaries permitted for python-libsbml: https://files.pythonhosted.org/packages/63/ef/02745ea814123d531a125d792fc891f823e9672f3ef50bbcf0af8bc77ae1/python_libsbml-5.20.1-pp39-pypy39_pp73-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/python-libsbml/)
2023-09-08T15:59:29,794 Fetching project page and analyzing links: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T15:59:29,794 Getting page https://www.piwheels.org/simple/python-libsbml/
2023-09-08T15:59:29,796 Found index url https://www.piwheels.org/simple/
2023-09-08T15:59:30,090 Fetched page https://www.piwheels.org/simple/python-libsbml/ as text/html
2023-09-08T15:59:30,108   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv7l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,108   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp39-cp39-linux_armv6l.whl#sha256=acaefe80981f5b14980ee74a64b426d317109c037596e6b21202449c0b0a63d1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,109   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv7l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,110   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.7-cp37-cp37m-linux_armv6l.whl#sha256=b5e524da3e6d956227dca5513170e634476b314745e6bbf68d0c086e422fb8b7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,110   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv7l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,111   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp39-cp39-linux_armv6l.whl#sha256=5447e43d0d248a188f866ed633fdd66aac5b78f62e9172e8bc216014353a61c4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,112   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv7l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,113   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.2-cp37-cp37m-linux_armv6l.whl#sha256=d4c280c817941ba60cafee8664aeb6660983cee6acf228ff44112adb717ba66d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,113   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv7l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,113   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp39-cp39-linux_armv6l.whl#sha256=ac04e6980a379238e49c73a2d38da4192e9a6c6929471264f599d9e1bcb9fc9b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,114   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv7l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,114   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp37-cp37m-linux_armv6l.whl#sha256=2b5c6b7bfa3aeb5d49fb9bc75d57682f72bc9297fb8439176ec56877acd4180b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,115   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv7l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,115   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.19.0-cp35-cp35m-linux_armv6l.whl#sha256=3bbf4e4c4fe801c9186e54e6f23dbfe86472b16ab19ca0a96327bea85484b053 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,116   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv7l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,117   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.18.0-cp34-cp34m-linux_armv6l.whl#sha256=0b585065ad28bbfed8a8a9ef243f42ff44a4846c5a313c1e8d80ce34b5b23a4d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,117   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv7l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,118   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.17.0-cp34-cp34m-linux_armv6l.whl#sha256=aac6b82e5582ea7cf382fc8691a5bef2dd8fb6d5886504d0de60069c0a4ec203 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,118   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv6l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,119   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp34-cp34m-linux_armv7l.whl#sha256=e7c16e205e08eff2857402fdc200057eca6893f3771890cd8a6c81cc16c6d2c5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,120   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv6l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,120   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.16.0-cp35-cp35m-linux_armv7l.whl#sha256=a3cade9eb512484ef5dc207a019ac3999203ffed679b3dc9c5c25fbf056d4ad1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,121   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv7l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,121   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp35-cp35m-linux_armv6l.whl#sha256=b148ecaa40d42bbe078d2e0181752f3e6522e0f4663592b9b7d46907a4ed0c69 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,122   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv7l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,122   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.15.0-cp34-cp34m-linux_armv6l.whl#sha256=8e1c345662ba869f2b39525e99615be6f8be609afc787d2ce1a6acc86ca91c47 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,123   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv7l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,123   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp34-cp34m-linux_armv6l.whl#sha256=541123b9f6e846c77aec0df337bbc8a6e5a36ae1bb3c26503a2a19a0918d27e3 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,124   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv6l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,125   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.13.0-cp35-cp35m-linux_armv7l.whl#sha256=997d0ba105622d54b49c839bc8ccef9ee102c774ae87a9a1746a5e5c845932d5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,125   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv7l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,126   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp39-cp39-linux_armv6l.whl#sha256=0cbeeb7e5b22cfb2837fd6288029a241690ad71331ab495181c59d8fd040204a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,126   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv6l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,127   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp35-cp35m-linux_armv7l.whl#sha256=b96cc73c61f4d82c623f20b9a0affe255d20ec4c40a1e06b479fe9f61c435db1 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,128   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv7l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,128   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.1-cp34-cp34m-linux_armv6l.whl#sha256=9692805fbd5546c7f900abf4a0c7789bee5318168206b6ebf03adcd4c4749d9a (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,129   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv7l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,129   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp34-cp34m-linux_armv6l.whl#sha256=1e459a5c616c5f0715301fc8f06630aabe1e94af3a782865d0eefe61ae94d0e4 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,130   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv6l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,130   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.12.0-cp35-cp35m-linux_armv7l.whl#sha256=e1ab8b6f324b855a8b2a9a944ed348cd3d47ef037bfc2301437f346876bf741d (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,131   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv7l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,132   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp39-cp39-linux_armv6l.whl#sha256=7b7e075b85c5ae0b1cb872911ca49a6ec9733798e64f8448d96cfe43c48db589 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,132   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv6l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,133   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp35-cp35m-linux_armv7l.whl#sha256=8545e3fb5192000f63afa5efc4dfe87118eb5908e016443dba3b8c772e654865 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,134   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv7l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,134   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.4-cp34-cp34m-linux_armv6l.whl#sha256=7c32d1dda712746179a1a128ddde4cefe8813690b1fbd023d92862863ef1058c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,135   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv7l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,136   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp39-cp39-linux_armv6l.whl#sha256=abd0a9129caf2bbc830766255b096ff66eccb0768a105b299ffbc621aba2274b (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,136   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv7l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,137   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp34-cp34m-linux_armv6l.whl#sha256=c378e3119f80d3d2bb89a9f9a990d22a6ad3ebc0aa4f50b626ca5148248d5945 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,137   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv7l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,138   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.11.0-cp35-cp35m-linux_armv6l.whl#sha256=4ff2003ae20ac2909e7a7e92f4c5116f6198f0291f89242283106b9f1a564019 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,138   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv7l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,139   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp39-cp39-linux_armv6l.whl#sha256=49310f6a736045dcddae5d6507dc693becfd5fde36a6ac06508ea41466b3df70 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,139   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv6l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,140   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp35-cp35m-linux_armv7l.whl#sha256=a6d7e93725685bb29fdaff1bfa087dfd042c00eaa268c0e8279a3f1bc466c83c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,141   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv7l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,141   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.2-cp34-cp34m-linux_armv6l.whl#sha256=1ee408b05ae185f6197687753bc2b5f17ecedb09cc0f9fa15b0ad0be19cea2f7 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,142   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv7l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,142   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp39-cp39-linux_armv6l.whl#sha256=1602f2fc99c4975a594cdc5dbf19e7fbea640df5dc2232e4a43167f55ea4afb0 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,143   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv6l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,144   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp35-cp35m-linux_armv7l.whl#sha256=4dbb7e002213db64ddce6739d0305eadf2b44009c667337062c875d8fa1671a5 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,144   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv7l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,144   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.1-cp34-cp34m-linux_armv6l.whl#sha256=798eb559ddbcfcc43a13595b982cd83c5def96c2ffdb2fe1034b8791458a307c (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,145   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv7l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,145   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp39-cp39-linux_armv6l.whl#sha256=c12e694a93d551e3770216b7c6e3fe0dc8d80578e7c5fa0243e7647c0e1d2676 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,146   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv7l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,146   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp35-cp35m-linux_armv6l.whl#sha256=d559804aa7b1b242fddbe5c6a2384f91671a286a00cf10a50aa794691d2a45bb (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,147   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv7l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,147   Skipping link: No binaries permitted for python-libsbml: https://www.piwheels.org/simple/python-libsbml/python_libsbml-5.10.0-cp34-cp34m-linux_armv6l.whl#sha256=58ad1b4b14dcc742fe609bbe87409d4b7630a755a4fa85a77c887b9a34cee629 (from https://www.piwheels.org/simple/python-libsbml/)
2023-09-08T15:59:30,148 Skipping link: not a file: https://www.piwheels.org/simple/python-libsbml/
2023-09-08T15:59:30,149 Skipping link: not a file: https://pypi.org/simple/python-libsbml/
2023-09-08T15:59:30,171 Given no hashes to check 1 links for project 'python-libsbml': discarding no candidates
2023-09-08T15:59:30,189 Collecting python-libsbml==5.10.2
2023-09-08T15:59:30,191   Created temporary directory: /tmp/pip-unpack-ognj6m_2
2023-09-08T15:59:31,290   Downloading python-libsbml-5.10.2.tar.gz (3.3 MB)
2023-09-08T15:59:34,160   Added python-libsbml==5.10.2 from https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz to build tracker '/tmp/pip-build-tracker-h6jos00m'
2023-09-08T15:59:34,162   Running setup.py (path:/tmp/pip-wheel-c3nf9k_z/python-libsbml_a1c4ec0e5b014e2ea7f15c83276ee204/setup.py) egg_info for package python-libsbml
2023-09-08T15:59:34,163   Created temporary directory: /tmp/pip-pip-egg-info-fj81s96c
2023-09-08T15:59:34,164   Preparing metadata (setup.py): started
2023-09-08T15:59:34,165   Running command python setup.py egg_info
2023-09-08T15:59:35,426   Preparing metadata (setup.py): finished with status 'done'
2023-09-08T15:59:35,429   Source in /tmp/pip-wheel-c3nf9k_z/python-libsbml_a1c4ec0e5b014e2ea7f15c83276ee204 has version 5.10.2, which satisfies requirement python-libsbml==5.10.2 from https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz
2023-09-08T15:59:35,430   Removed python-libsbml==5.10.2 from https://files.pythonhosted.org/packages/0a/77/712a0789a6e6b3aef6f673639f4e5c61e286394982fc264ac79341e54e22/python-libsbml-5.10.2.tar.gz from build tracker '/tmp/pip-build-tracker-h6jos00m'
2023-09-08T15:59:35,434 Created temporary directory: /tmp/pip-unpack-hol0e3rg
2023-09-08T15:59:35,435 Created temporary directory: /tmp/pip-unpack-5402icc3
2023-09-08T15:59:35,437 Building wheels for collected packages: python-libsbml
2023-09-08T15:59:35,441   Created temporary directory: /tmp/pip-wheel-zrhl54ez
2023-09-08T15:59:35,442   Building wheel for python-libsbml (setup.py): started
2023-09-08T15:59:35,443   Destination directory: /tmp/pip-wheel-zrhl54ez
2023-09-08T15:59:35,443   Running command python setup.py bdist_wheel
2023-09-08T15:59:39,994   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_MangledTypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2023-09-08T15:59:39,994   ./base/libsbml_wrap.cpp:569:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:39,995     569 |       register size_t l = 0;
2023-09-08T15:59:39,996         |                       ^
2023-09-08T15:59:39,996   ./base/libsbml_wrap.cpp:570:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:39,997     570 |       register size_t r = iter->size - 1;
2023-09-08T15:59:39,998         |                       ^
2023-09-08T15:59:39,999   ./base/libsbml_wrap.cpp:573:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:39,999     573 |         register size_t i = (l + r) >> 1;
2023-09-08T15:59:40,000         |                         ^
2023-09-08T15:59:40,001   ./base/libsbml_wrap.cpp:576:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,002     576 |           register int compare = strcmp(name, iname);
2023-09-08T15:59:40,002         |                        ^~~~~~~
2023-09-08T15:59:40,003   ./base/libsbml_wrap.cpp: In function ‘swig_type_info* SWIG_TypeQueryModule(swig_module_info*, swig_module_info*, const char*)’:
2023-09-08T15:59:40,004   ./base/libsbml_wrap.cpp:620:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,004     620 |       register size_t i = 0;
2023-09-08T15:59:40,005         |                       ^
2023-09-08T15:59:40,005   ./base/libsbml_wrap.cpp: In function ‘char* SWIG_PackData(char*, void*, size_t)’:
2023-09-08T15:59:40,006   ./base/libsbml_wrap.cpp:639:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,007     639 |   register const unsigned char *u = (unsigned char *) ptr;
2023-09-08T15:59:40,007         |                                 ^
2023-09-08T15:59:40,008   ./base/libsbml_wrap.cpp:640:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,008     640 |   register const unsigned char *eu =  u + sz;
2023-09-08T15:59:40,009         |                                 ^~
2023-09-08T15:59:40,010   ./base/libsbml_wrap.cpp:642:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,011     642 |     register unsigned char uu = *u;
2023-09-08T15:59:40,011         |                            ^~
2023-09-08T15:59:40,012   ./base/libsbml_wrap.cpp: In function ‘const char* SWIG_UnpackData(const char*, void*, size_t)’:
2023-09-08T15:59:40,013   ./base/libsbml_wrap.cpp:654:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,013     654 |   register unsigned char *u = (unsigned char *) ptr;
2023-09-08T15:59:40,014         |                           ^
2023-09-08T15:59:40,014   ./base/libsbml_wrap.cpp:655:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,015     655 |   register const unsigned char *eu = u + sz;
2023-09-08T15:59:40,015         |                                 ^~
2023-09-08T15:59:40,016   ./base/libsbml_wrap.cpp:657:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,016     657 |     register char d = *(c++);
2023-09-08T15:59:40,017         |                   ^
2023-09-08T15:59:40,018   ./base/libsbml_wrap.cpp:658:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,018     658 |     register unsigned char uu;
2023-09-08T15:59:40,019         |                            ^~
2023-09-08T15:59:40,023   ./base/libsbml_wrap.cpp: In function ‘int SWIG_Python_UnpackTuple(PyObject*, const char*, Py_ssize_t, Py_ssize_t, PyObject**)’:
2023-09-08T15:59:40,024   ./base/libsbml_wrap.cpp:1322:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,024    1322 |       register int i;
2023-09-08T15:59:40,025         |                    ^
2023-09-08T15:59:40,025   ./base/libsbml_wrap.cpp:1332:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,026    1332 |     register Py_ssize_t l = PyTuple_GET_SIZE(args);
2023-09-08T15:59:40,027         |                         ^
2023-09-08T15:59:40,027   ./base/libsbml_wrap.cpp:1342:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
2023-09-08T15:59:40,028    1342 |       register int i;
2023-09-08T15:59:40,029         |                    ^
2023-09-08T15:59:41,105   ./base/libsbml_wrap.cpp: At global scope:
2023-09-08T15:59:41,105   ./base/libsbml_wrap.cpp:3202:65: warning: ‘unexpected_handler’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:41,106    3202 |     UnknownExceptionHandler(std::unexpected_handler nh = handler)
2023-09-08T15:59:41,107         |                                                                 ^
2023-09-08T15:59:41,113   ./base/libsbml_wrap.cpp: In constructor ‘Swig::UnknownExceptionHandler::UnknownExceptionHandler(std::unexpected_handler)’:
2023-09-08T15:59:41,114   ./base/libsbml_wrap.cpp:3204:32: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:41,114    3204 |       old = std::set_unexpected(nh);
2023-09-08T15:59:41,115         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T15:59:41,116   In file included from /usr/include/c++/12/ios:39,
2023-09-08T15:59:41,117                    from /usr/include/c++/12/ostream:38,
2023-09-08T15:59:41,117                    from /usr/include/c++/12/iostream:39,
2023-09-08T15:59:41,118                    from ./base/libsbml_wrap.cpp:2956:
2023-09-08T15:59:41,119   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T15:59:41,120      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T15:59:41,120         |                      ^~~~~~~~~~~~~~
2023-09-08T15:59:41,121   ./base/libsbml_wrap.cpp: In destructor ‘Swig::UnknownExceptionHandler::~UnknownExceptionHandler()’:
2023-09-08T15:59:41,122   ./base/libsbml_wrap.cpp:3209:26: warning: ‘void (* std::set_unexpected(unexpected_handler))()’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:41,123    3209 |       std::set_unexpected(old);
2023-09-08T15:59:41,123         |       ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T15:59:41,124   /usr/include/c++/12/exception:91:22: note: declared here
2023-09-08T15:59:41,125      91 |   unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT;
2023-09-08T15:59:41,125         |                      ^~~~~~~~~~~~~~
2023-09-08T15:59:41,935   In file included from ./base/libsbml.h:45,
2023-09-08T15:59:41,936                    from ./base/libsbml_wrap.cpp:3797:
2023-09-08T15:59:41,936   ./base//sbml/ListOf.h: At global scope:
2023-09-08T15:59:41,937   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:41,937      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T15:59:41,938         |                           ^~~~~~~~~~~~~~
2023-09-08T15:59:41,939   In file included from /usr/include/c++/12/string:48,
2023-09-08T15:59:41,939                    from ./base/libsbml_wrap.cpp:2955:
2023-09-08T15:59:41,940   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T15:59:41,940     117 |     struct unary_function
2023-09-08T15:59:41,941         |            ^~~~~~~~~~~~~~
2023-09-08T15:59:42,830   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T15:59:42,831                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T15:59:42,831                    from ./base/../swig/fbc-package.h:31,
2023-09-08T15:59:42,832                    from ./base/../swig/libsbml-packages.h:4,
2023-09-08T15:59:42,832                    from ./base/libsbml_wrap.cpp:3801:
2023-09-08T15:59:42,833   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:42,834     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T15:59:42,835         |                                          ^~~~~~~~~~~~~~
2023-09-08T15:59:42,835   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T15:59:42,836     117 |     struct unary_function
2023-09-08T15:59:42,837         |            ^~~~~~~~~~~~~~
2023-09-08T15:59:42,842   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:42,842     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T15:59:42,843         |                                      ^~~~~~~~~~~~~~
2023-09-08T15:59:42,844   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T15:59:42,845     117 |     struct unary_function
2023-09-08T15:59:42,845         |            ^~~~~~~~~~~~~~
2023-09-08T15:59:42,862   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T15:59:42,863   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:42,864     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T15:59:42,865         |                                            ^~~~~~~~~~~~~~
2023-09-08T15:59:42,865   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T15:59:42,866     117 |     struct unary_function
2023-09-08T15:59:42,867         |            ^~~~~~~~~~~~~~
2023-09-08T15:59:43,115   ./base/libsbml_wrap.cpp:4705:36: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:43,116    4705 |   struct less <PyObject *>: public binary_function<PyObject *, PyObject *, bool>
2023-09-08T15:59:43,117         |                                    ^~~~~~~~~~~~~~~
2023-09-08T15:59:43,117   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T15:59:43,118     131 |     struct binary_function
2023-09-08T15:59:43,119         |            ^~~~~~~~~~~~~~~
2023-09-08T15:59:43,120   ./base/libsbml_wrap.cpp:4730:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:43,121    4730 |   struct less <swig::SwigPtr_PyObject>: public binary_function<swig::SwigPtr_PyObject, swig::SwigPtr_PyObject, bool>
2023-09-08T15:59:43,121         |                                                ^~~~~~~~~~~~~~~
2023-09-08T15:59:43,122   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T15:59:43,122     131 |     struct binary_function
2023-09-08T15:59:43,123         |            ^~~~~~~~~~~~~~~
2023-09-08T15:59:43,125   ./base/libsbml_wrap.cpp:4740:48: warning: ‘template<class _Arg1, class _Arg2, class _Result> struct std::binary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T15:59:43,126    4740 |   struct less <swig::SwigVar_PyObject>: public binary_function<swig::SwigVar_PyObject, swig::SwigVar_PyObject, bool>
2023-09-08T15:59:43,126         |                                                ^~~~~~~~~~~~~~~
2023-09-08T15:59:43,127   /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here
2023-09-08T15:59:43,127     131 |     struct binary_function
2023-09-08T15:59:43,128         |            ^~~~~~~~~~~~~~~
2023-09-08T16:05:41,663   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:05:41,664                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:05:41,665                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:05:41,665                    from ./base/sbml/AlgebraicRule.cpp:49:
2023-09-08T16:05:41,666   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:05:41,667      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:05:41,667         |                           ^~~~~~~~~~~~~~
2023-09-08T16:05:41,668   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:05:41,669                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:05:41,670                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:05:41,670                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:05:41,671                    from ./base/sbml/AlgebraicRule.cpp:34:
2023-09-08T16:05:41,672   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:05:41,673     117 |     struct unary_function
2023-09-08T16:05:41,673         |            ^~~~~~~~~~~~~~
2023-09-08T16:05:41,957   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)’:
2023-09-08T16:05:41,958   ./base/sbml/AlgebraicRule.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:05:41,958     163 |   catch (SBMLConstructorException)
2023-09-08T16:05:41,959         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:05:41,960   ./base/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:05:41,961   ./base/sbml/AlgebraicRule.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:05:41,961     179 |   catch (SBMLConstructorException)
2023-09-08T16:05:41,962         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:05:45,948   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:05:45,949                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:05:45,950                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:05:45,950                    from ./base/sbml/AssignmentRule.cpp:49:
2023-09-08T16:05:45,951   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:05:45,952      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:05:45,953         |                           ^~~~~~~~~~~~~~
2023-09-08T16:05:45,953   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:05:45,954                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:05:45,954                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:05:45,955                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:05:45,955                    from ./base/sbml/AssignmentRule.cpp:34:
2023-09-08T16:05:45,956   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:05:45,956     117 |     struct unary_function
2023-09-08T16:05:45,957         |            ^~~~~~~~~~~~~~
2023-09-08T16:05:46,243   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)’:
2023-09-08T16:05:46,243   ./base/sbml/AssignmentRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:05:46,244     154 |   catch (SBMLConstructorException)
2023-09-08T16:05:46,244         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:05:46,245   ./base/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:05:46,246   ./base/sbml/AssignmentRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:05:46,247     170 |   catch (SBMLConstructorException)
2023-09-08T16:05:46,247         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:05:50,335   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:05:50,336                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:05:50,336                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:05:50,337                    from ./base/sbml/Compartment.cpp:41:
2023-09-08T16:05:50,338   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:05:50,339      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:05:50,339         |                           ^~~~~~~~~~~~~~
2023-09-08T16:05:50,340   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:05:50,341                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:05:50,342                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:05:50,342                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:05:50,343                    from ./base/sbml/Compartment.cpp:35:
2023-09-08T16:05:50,344   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:05:50,344     117 |     struct unary_function
2023-09-08T16:05:50,345         |            ^~~~~~~~~~~~~~
2023-09-08T16:05:50,635   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T16:05:50,636   ./base/sbml/Compartment.cpp:146:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:05:50,636     146 |   if (&orig == NULL)
2023-09-08T16:05:50,637         |             ^
2023-09-08T16:05:50,637   ./base/sbml/Compartment.cpp:143:45: note: ‘orig’ declared here
2023-09-08T16:05:50,638     143 | Compartment::Compartment(const Compartment& orig) :
2023-09-08T16:05:50,639         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:05:50,640   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T16:05:50,640   ./base/sbml/Compartment.cpp:175:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:05:50,641     175 |   if (&rhs == NULL)
2023-09-08T16:05:50,642         |            ^
2023-09-08T16:05:50,643   ./base/sbml/Compartment.cpp:173:56: note: ‘rhs’ declared here
2023-09-08T16:05:50,643     173 | Compartment& Compartment::operator=(const Compartment& rhs)
2023-09-08T16:05:50,644         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:50,647   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T16:05:50,647   ./base/sbml/Compartment.cpp:496:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:50,648     496 |   if (&(sid) == NULL)
2023-09-08T16:05:50,649         |              ^
2023-09-08T16:05:50,649   ./base/sbml/Compartment.cpp:485:40: note: ‘sid’ declared here
2023-09-08T16:05:50,650     485 | Compartment::setId (const std::string& sid)
2023-09-08T16:05:50,650         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:50,651   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T16:05:50,652   ./base/sbml/Compartment.cpp:521:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:05:50,652     521 |   if (&(name) == NULL)
2023-09-08T16:05:50,653         |               ^
2023-09-08T16:05:50,654   ./base/sbml/Compartment.cpp:516:42: note: ‘name’ declared here
2023-09-08T16:05:50,654     516 | Compartment::setName (const std::string& name)
2023-09-08T16:05:50,655         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:05:50,656   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T16:05:50,656   ./base/sbml/Compartment.cpp:551:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:50,657     551 |   if (&(sid) == NULL)
2023-09-08T16:05:50,658         |              ^
2023-09-08T16:05:50,659   ./base/sbml/Compartment.cpp:549:53: note: ‘sid’ declared here
2023-09-08T16:05:50,660     549 | Compartment::setCompartmentType (const std::string& sid)
2023-09-08T16:05:50,660         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:50,661   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T16:05:50,663   ./base/sbml/Compartment.cpp:673:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:50,663     673 |   if (&(sid) == NULL)
2023-09-08T16:05:50,664         |              ^
2023-09-08T16:05:50,665   ./base/sbml/Compartment.cpp:671:43: note: ‘sid’ declared here
2023-09-08T16:05:50,666     671 | Compartment::setUnits (const std::string& sid)
2023-09-08T16:05:50,667         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:50,667   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T16:05:50,668   ./base/sbml/Compartment.cpp:695:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:50,669     695 |   if (&(sid) == NULL)
2023-09-08T16:05:50,670         |              ^
2023-09-08T16:05:50,670   ./base/sbml/Compartment.cpp:693:45: note: ‘sid’ declared here
2023-09-08T16:05:50,671     693 | Compartment::setOutside (const std::string& sid)
2023-09-08T16:05:50,672         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:50,709   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T16:05:50,710   ./base/sbml/Compartment.cpp:1534:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:50,710    1534 |   if (&(sid) == NULL)
2023-09-08T16:05:50,711         |              ^
2023-09-08T16:05:50,712   ./base/sbml/Compartment.cpp:1530:45: note: ‘sid’ declared here
2023-09-08T16:05:50,713    1530 | ListOfCompartments::get (const std::string& sid) const
2023-09-08T16:05:50,714         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:50,714   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T16:05:50,715   ./base/sbml/Compartment.cpp:1562:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:50,715    1562 |   if (&(sid) != NULL)
2023-09-08T16:05:50,716         |              ^
2023-09-08T16:05:50,717   ./base/sbml/Compartment.cpp:1557:48: note: ‘sid’ declared here
2023-09-08T16:05:50,717    1557 | ListOfCompartments::remove (const std::string& sid)
2023-09-08T16:05:50,718         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:50,723   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’:
2023-09-08T16:05:50,723   ./base/sbml/Compartment.cpp:1640:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:05:50,724    1640 |   catch (SBMLConstructorException)
2023-09-08T16:05:50,725         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:05:50,725   ./base/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:05:50,726   ./base/sbml/Compartment.cpp:1656:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:05:50,726    1656 |   catch (SBMLConstructorException)
2023-09-08T16:05:50,727         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:05:51,330   ./base/sbml/Compartment.cpp: In copy constructor ‘Compartment::Compartment(const Compartment&)’:
2023-09-08T16:05:51,331   ./base/sbml/Compartment.cpp:146:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,331     146 |   if (&orig == NULL)
2023-09-08T16:05:51,332         |   ^~
2023-09-08T16:05:51,333   ./base/sbml/Compartment.cpp: In member function ‘Compartment& Compartment::operator=(const Compartment&)’:
2023-09-08T16:05:51,334   ./base/sbml/Compartment.cpp:175:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,334     175 |   if (&rhs == NULL)
2023-09-08T16:05:51,335         |   ^~
2023-09-08T16:05:51,336   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setId(const std::string&)’:
2023-09-08T16:05:51,337   ./base/sbml/Compartment.cpp:496:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,337     496 |   if (&(sid) == NULL)
2023-09-08T16:05:51,338         |   ^~
2023-09-08T16:05:51,339   ./base/sbml/Compartment.cpp: In member function ‘virtual int Compartment::setName(const std::string&)’:
2023-09-08T16:05:51,340   ./base/sbml/Compartment.cpp:521:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,340     521 |   if (&(name) == NULL)
2023-09-08T16:05:51,341         |   ^~
2023-09-08T16:05:51,342   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setCompartmentType(const std::string&)’:
2023-09-08T16:05:51,342   ./base/sbml/Compartment.cpp:551:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,343     551 |   if (&(sid) == NULL)
2023-09-08T16:05:51,344         |   ^~
2023-09-08T16:05:51,344   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setUnits(const std::string&)’:
2023-09-08T16:05:51,345   ./base/sbml/Compartment.cpp:673:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,346     673 |   if (&(sid) == NULL)
2023-09-08T16:05:51,346         |   ^~
2023-09-08T16:05:51,347   ./base/sbml/Compartment.cpp: In member function ‘int Compartment::setOutside(const std::string&)’:
2023-09-08T16:05:51,348   ./base/sbml/Compartment.cpp:695:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,349     695 |   if (&(sid) == NULL)
2023-09-08T16:05:51,350         |   ^~
2023-09-08T16:05:51,350   ./base/sbml/Compartment.cpp: In member function ‘virtual const Compartment* ListOfCompartments::get(const std::string&) const’:
2023-09-08T16:05:51,351   ./base/sbml/Compartment.cpp:1534:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,351    1534 |   if (&(sid) == NULL)
2023-09-08T16:05:51,352         |   ^~
2023-09-08T16:05:51,352   ./base/sbml/Compartment.cpp: In member function ‘virtual Compartment* ListOfCompartments::remove(const std::string&)’:
2023-09-08T16:05:51,353   ./base/sbml/Compartment.cpp:1562:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:05:51,353    1562 |   if (&(sid) != NULL)
2023-09-08T16:05:51,354         |   ^~
2023-09-08T16:05:59,358   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:05:59,358                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:05:59,359                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:05:59,359                    from ./base/sbml/CompartmentType.cpp:40:
2023-09-08T16:05:59,360   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:05:59,361      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:05:59,361         |                           ^~~~~~~~~~~~~~
2023-09-08T16:05:59,362   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:05:59,362                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:05:59,363                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:05:59,363                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:05:59,364                    from ./base/sbml/CompartmentType.cpp:33:
2023-09-08T16:05:59,365   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:05:59,366     117 |     struct unary_function
2023-09-08T16:05:59,366         |            ^~~~~~~~~~~~~~
2023-09-08T16:05:59,657   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T16:05:59,657   ./base/sbml/CompartmentType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:05:59,658      92 |   if (&orig == NULL)
2023-09-08T16:05:59,659         |             ^
2023-09-08T16:05:59,660   ./base/sbml/CompartmentType.cpp:89:57: note: ‘orig’ declared here
2023-09-08T16:05:59,661      89 | CompartmentType::CompartmentType(const CompartmentType& orig) :
2023-09-08T16:05:59,661         |                                  ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:05:59,662   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T16:05:59,663   ./base/sbml/CompartmentType.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:05:59,663     110 |   if (&rhs == NULL)
2023-09-08T16:05:59,664         |            ^
2023-09-08T16:05:59,665   ./base/sbml/CompartmentType.cpp:108:68: note: ‘rhs’ declared here
2023-09-08T16:05:59,666     108 | CompartmentType& CompartmentType::operator=(const CompartmentType& rhs)
2023-09-08T16:05:59,666         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:59,667   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T16:05:59,668   ./base/sbml/CompartmentType.cpp:207:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:59,668     207 |   if (&(sid) == NULL)
2023-09-08T16:05:59,669         |              ^
2023-09-08T16:05:59,670   ./base/sbml/CompartmentType.cpp:196:44: note: ‘sid’ declared here
2023-09-08T16:05:59,671     196 | CompartmentType::setId (const std::string& sid)
2023-09-08T16:05:59,672         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:59,672   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T16:05:59,673   ./base/sbml/CompartmentType.cpp:232:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:05:59,674     232 |   if (&(name) == NULL)
2023-09-08T16:05:59,674         |               ^
2023-09-08T16:05:59,675   ./base/sbml/CompartmentType.cpp:227:46: note: ‘name’ declared here
2023-09-08T16:05:59,675     227 | CompartmentType::setName (const std::string& name)
2023-09-08T16:05:59,676         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:05:59,683   ./base/sbml/CompartmentType.cpp: At global scope:
2023-09-08T16:05:59,684   ./base/sbml/CompartmentType.cpp:543:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:05:59,684     543 | struct IdEqCT : public unary_function<SBase*, bool>
2023-09-08T16:05:59,685         |                        ^~~~~~~~~~~~~~
2023-09-08T16:05:59,686   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:05:59,686     117 |     struct unary_function
2023-09-08T16:05:59,687         |            ^~~~~~~~~~~~~~
2023-09-08T16:05:59,689   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T16:05:59,689   ./base/sbml/CompartmentType.cpp:568:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:59,690     568 |   if (&(sid) == NULL)
2023-09-08T16:05:59,691         |              ^
2023-09-08T16:05:59,692   ./base/sbml/CompartmentType.cpp:564:49: note: ‘sid’ declared here
2023-09-08T16:05:59,692     564 | ListOfCompartmentTypes::get (const std::string& sid) const
2023-09-08T16:05:59,693         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:59,694   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T16:05:59,695   ./base/sbml/CompartmentType.cpp:596:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:05:59,696     596 |   if (&(sid) != NULL)
2023-09-08T16:05:59,696         |              ^
2023-09-08T16:05:59,697   ./base/sbml/CompartmentType.cpp:591:52: note: ‘sid’ declared here
2023-09-08T16:05:59,698     591 | ListOfCompartmentTypes::remove (const std::string& sid)
2023-09-08T16:05:59,699         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:05:59,702   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’:
2023-09-08T16:05:59,703   ./base/sbml/CompartmentType.cpp:674:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:05:59,704     674 |   catch (SBMLConstructorException)
2023-09-08T16:05:59,704         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:05:59,705   ./base/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:05:59,706   ./base/sbml/CompartmentType.cpp:690:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:05:59,707     690 |   catch (SBMLConstructorException)
2023-09-08T16:05:59,707         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:00,269   ./base/sbml/CompartmentType.cpp: In member function ‘virtual const CompartmentType* ListOfCompartmentTypes::get(const std::string&) const’:
2023-09-08T16:06:00,270   ./base/sbml/CompartmentType.cpp:568:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:00,270     568 |   if (&(sid) == NULL)
2023-09-08T16:06:00,271         |   ^~
2023-09-08T16:06:00,273   ./base/sbml/CompartmentType.cpp: In copy constructor ‘CompartmentType::CompartmentType(const CompartmentType&)’:
2023-09-08T16:06:00,273   ./base/sbml/CompartmentType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:00,274      92 |   if (&orig == NULL)
2023-09-08T16:06:00,274         |   ^~
2023-09-08T16:06:00,275   ./base/sbml/CompartmentType.cpp: In member function ‘CompartmentType& CompartmentType::operator=(const CompartmentType&)’:
2023-09-08T16:06:00,275   ./base/sbml/CompartmentType.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:00,276     110 |   if (&rhs == NULL)
2023-09-08T16:06:00,276         |   ^~
2023-09-08T16:06:00,277   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setId(const std::string&)’:
2023-09-08T16:06:00,278   ./base/sbml/CompartmentType.cpp:207:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:00,278     207 |   if (&(sid) == NULL)
2023-09-08T16:06:00,279         |   ^~
2023-09-08T16:06:00,279   ./base/sbml/CompartmentType.cpp: In member function ‘virtual int CompartmentType::setName(const std::string&)’:
2023-09-08T16:06:00,280   ./base/sbml/CompartmentType.cpp:232:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:00,281     232 |   if (&(name) == NULL)
2023-09-08T16:06:00,281         |   ^~
2023-09-08T16:06:00,285   ./base/sbml/CompartmentType.cpp: In member function ‘virtual CompartmentType* ListOfCompartmentTypes::remove(const std::string&)’:
2023-09-08T16:06:00,286   ./base/sbml/CompartmentType.cpp:596:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:00,286     596 |   if (&(sid) != NULL)
2023-09-08T16:06:00,287         |   ^~
2023-09-08T16:06:05,357   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:06:05,357                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:06:05,358                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:06:05,359                    from ./base/sbml/Constraint.cpp:43:
2023-09-08T16:06:05,360   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:05,360      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:05,361         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:05,362   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:06:05,363                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:06:05,363                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:06:05,364                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:06:05,365                    from ./base/sbml/Constraint.cpp:33:
2023-09-08T16:06:05,365   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:05,366     117 |     struct unary_function
2023-09-08T16:06:05,366         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:05,649   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T16:06:05,651   ./base/sbml/Constraint.cpp:101:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:05,654     101 |   if (&orig == NULL)
2023-09-08T16:06:05,655         |             ^
2023-09-08T16:06:05,657   ./base/sbml/Constraint.cpp:96:43: note: ‘orig’ declared here
2023-09-08T16:06:05,660      96 | Constraint::Constraint (const Constraint& orig) :
2023-09-08T16:06:05,662         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:05,664   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T16:06:05,665   ./base/sbml/Constraint.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:06:05,666     122 |   if (&rhs == NULL)
2023-09-08T16:06:05,667         |            ^
2023-09-08T16:06:05,667   ./base/sbml/Constraint.cpp:120:53: note: ‘rhs’ declared here
2023-09-08T16:06:05,668     120 | Constraint& Constraint::operator=(const Constraint& rhs)
2023-09-08T16:06:05,668         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:05,684   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’:
2023-09-08T16:06:05,685   ./base/sbml/Constraint.cpp:772:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:05,685     772 |   catch (SBMLConstructorException)
2023-09-08T16:06:05,686         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:05,686   ./base/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:06:05,687   ./base/sbml/Constraint.cpp:788:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:05,688     788 |   catch (SBMLConstructorException)
2023-09-08T16:06:05,688         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:06,223   ./base/sbml/Constraint.cpp: In copy constructor ‘Constraint::Constraint(const Constraint&)’:
2023-09-08T16:06:06,224   ./base/sbml/Constraint.cpp:101:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:06,225     101 |   if (&orig == NULL)
2023-09-08T16:06:06,226         |   ^~
2023-09-08T16:06:06,226   ./base/sbml/Constraint.cpp: In member function ‘Constraint& Constraint::operator=(const Constraint&)’:
2023-09-08T16:06:06,227   ./base/sbml/Constraint.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:06,228     122 |   if (&rhs == NULL)
2023-09-08T16:06:06,228         |   ^~
2023-09-08T16:06:10,871   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:06:10,871                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:06:10,872                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:06:10,873                    from ./base/sbml/Delay.cpp:45:
2023-09-08T16:06:10,874   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:10,874      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:10,875         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:10,876   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:06:10,877                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:06:10,877                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:06:10,878                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:06:10,879                    from ./base/sbml/Delay.cpp:33:
2023-09-08T16:06:10,879   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:10,880     117 |     struct unary_function
2023-09-08T16:06:10,881         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:11,166   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T16:06:11,167   ./base/sbml/Delay.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:11,168     100 |   if (&orig == NULL)
2023-09-08T16:06:11,168         |             ^
2023-09-08T16:06:11,169   ./base/sbml/Delay.cpp:96:28: note: ‘orig’ declared here
2023-09-08T16:06:11,170      96 | Delay::Delay (const Delay& orig) :
2023-09-08T16:06:11,171         |               ~~~~~~~~~~~~~^~~~
2023-09-08T16:06:11,171   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T16:06:11,172   ./base/sbml/Delay.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:06:11,173     122 |   if (&rhs == NULL)
2023-09-08T16:06:11,174         |            ^
2023-09-08T16:06:11,174   ./base/sbml/Delay.cpp:120:38: note: ‘rhs’ declared here
2023-09-08T16:06:11,175     120 | Delay& Delay::operator=(const Delay& rhs)
2023-09-08T16:06:11,175         |                         ~~~~~~~~~~~~~^~~
2023-09-08T16:06:11,190   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’:
2023-09-08T16:06:11,191   ./base/sbml/Delay.cpp:648:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:11,192     648 |   catch (SBMLConstructorException)
2023-09-08T16:06:11,192         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:11,193   ./base/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:06:11,193   ./base/sbml/Delay.cpp:664:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:11,194     664 |   catch (SBMLConstructorException)
2023-09-08T16:06:11,194         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:11,686   ./base/sbml/Delay.cpp: In copy constructor ‘Delay::Delay(const Delay&)’:
2023-09-08T16:06:11,687   ./base/sbml/Delay.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:11,688     100 |   if (&orig == NULL)
2023-09-08T16:06:11,688         |   ^~
2023-09-08T16:06:11,689   ./base/sbml/Delay.cpp: In member function ‘Delay& Delay::operator=(const Delay&)’:
2023-09-08T16:06:11,690   ./base/sbml/Delay.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:11,690     122 |   if (&rhs == NULL)
2023-09-08T16:06:11,691         |   ^~
2023-09-08T16:06:15,739   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:06:15,739                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:06:15,740                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:06:15,740                    from ./base/sbml/Event.cpp:44:
2023-09-08T16:06:15,741   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:15,742      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:15,743         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:15,744   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:06:15,744                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:06:15,745                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:06:15,746                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:06:15,746                    from ./base/sbml/Event.cpp:33:
2023-09-08T16:06:15,747   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:15,748     117 |     struct unary_function
2023-09-08T16:06:15,748         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:16,039   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T16:06:16,039   ./base/sbml/Event.cpp:134:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:16,040     134 |   if (&orig == NULL)
2023-09-08T16:06:16,041         |             ^
2023-09-08T16:06:16,042   ./base/sbml/Event.cpp:127:28: note: ‘orig’ declared here
2023-09-08T16:06:16,042     127 | Event::Event (const Event& orig) :
2023-09-08T16:06:16,043         |               ~~~~~~~~~~~~~^~~~
2023-09-08T16:06:16,044   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T16:06:16,045   ./base/sbml/Event.cpp:171:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:06:16,046     171 |   if (&rhs == NULL)
2023-09-08T16:06:16,046         |            ^
2023-09-08T16:06:16,047   ./base/sbml/Event.cpp:169:38: note: ‘rhs’ declared here
2023-09-08T16:06:16,047     169 | Event& Event::operator=(const Event& rhs)
2023-09-08T16:06:16,048         |                         ~~~~~~~~~~~~~^~~
2023-09-08T16:06:16,063   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T16:06:16,063   ./base/sbml/Event.cpp:530:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:16,064     530 |   if (&(sid) == NULL)
2023-09-08T16:06:16,064         |              ^
2023-09-08T16:06:16,065   ./base/sbml/Event.cpp:519:34: note: ‘sid’ declared here
2023-09-08T16:06:16,065     519 | Event::setId (const std::string& sid)
2023-09-08T16:06:16,066         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:16,067   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T16:06:16,067   ./base/sbml/Event.cpp:556:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:06:16,068     556 |   if (&(name) == NULL)
2023-09-08T16:06:16,068         |               ^
2023-09-08T16:06:16,069   ./base/sbml/Event.cpp:551:36: note: ‘name’ declared here
2023-09-08T16:06:16,069     551 | Event::setName (const std::string& name)
2023-09-08T16:06:16,070         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:16,072   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T16:06:16,073   ./base/sbml/Event.cpp:704:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:16,074     704 |   if (&(sid) == NULL)
2023-09-08T16:06:16,074         |              ^
2023-09-08T16:06:16,075   ./base/sbml/Event.cpp:702:41: note: ‘sid’ declared here
2023-09-08T16:06:16,076     702 | Event::setTimeUnits (const std::string& sid)
2023-09-08T16:06:16,076         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:16,083   ./base/sbml/Event.cpp: In member function ‘const EventAssignment* Event::getEventAssignment(const std::string&) const’:
2023-09-08T16:06:16,083   ./base/sbml/Event.cpp:1079:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T16:06:16,084    1079 |   return (&variable != NULL ) ?
2023-09-08T16:06:16,085         |                     ^
2023-09-08T16:06:16,086   ./base/sbml/Event.cpp:1077:47: note: ‘variable’ declared here
2023-09-08T16:06:16,087    1077 | Event::getEventAssignment (const std::string& variable) const
2023-09-08T16:06:16,087         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:06:16,088   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::getEventAssignment(const std::string&)’:
2023-09-08T16:06:16,089   ./base/sbml/Event.cpp:1091:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T16:06:16,089    1091 |   return (&variable != NULL ) ?
2023-09-08T16:06:16,090         |                     ^
2023-09-08T16:06:16,091   ./base/sbml/Event.cpp:1089:47: note: ‘variable’ declared here
2023-09-08T16:06:16,091    1089 | Event::getEventAssignment (const std::string& variable)
2023-09-08T16:06:16,092         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:06:16,093   ./base/sbml/Event.cpp: In member function ‘EventAssignment* Event::removeEventAssignment(const std::string&)’:
2023-09-08T16:06:16,094   ./base/sbml/Event.cpp:1124:21: warning: the compiler can assume that the address of ‘variable’ will never be NULL [-Waddress]
2023-09-08T16:06:16,094    1124 |   return (&variable != NULL) ? mEventAssignments.remove(variable) : NULL;
2023-09-08T16:06:16,095         |                     ^
2023-09-08T16:06:16,096   ./base/sbml/Event.cpp:1122:50: note: ‘variable’ declared here
2023-09-08T16:06:16,097    1122 | Event::removeEventAssignment (const std::string& variable)
2023-09-08T16:06:16,098         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:06:16,122   ./base/sbml/Event.cpp: At global scope:
2023-09-08T16:06:16,123   ./base/sbml/Event.cpp:1741:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:16,123    1741 | struct IdEqE : public unary_function<SBase*, bool>
2023-09-08T16:06:16,124         |                       ^~~~~~~~~~~~~~
2023-09-08T16:06:16,125   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:16,125     117 |     struct unary_function
2023-09-08T16:06:16,126         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:16,126   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::get(const std::string&)’:
2023-09-08T16:06:16,127   ./base/sbml/Event.cpp:1755:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:16,127    1755 |   return (&sid != NULL) ? const_cast<Event*>(
2023-09-08T16:06:16,128         |                ^
2023-09-08T16:06:16,129   ./base/sbml/Event.cpp:1753:39: note: ‘sid’ declared here
2023-09-08T16:06:16,129    1753 | ListOfEvents::get (const std::string& sid)
2023-09-08T16:06:16,130         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:16,130   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T16:06:16,131   ./base/sbml/Event.cpp:1764:12: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:16,131    1764 |   if (&sid == NULL) return NULL;
2023-09-08T16:06:16,132         |            ^
2023-09-08T16:06:16,133   ./base/sbml/Event.cpp:1762:39: note: ‘sid’ declared here
2023-09-08T16:06:16,134    1762 | ListOfEvents::get (const std::string& sid) const
2023-09-08T16:06:16,134         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:16,135   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T16:06:16,136   ./base/sbml/Event.cpp:1787:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:16,137    1787 |   if (&(sid) != NULL)
2023-09-08T16:06:16,137         |              ^
2023-09-08T16:06:16,138   ./base/sbml/Event.cpp:1782:42: note: ‘sid’ declared here
2023-09-08T16:06:16,139    1782 | ListOfEvents::remove (const std::string& sid)
2023-09-08T16:06:16,140         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:16,141   ./base/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’:
2023-09-08T16:06:16,142   ./base/sbml/Event.cpp:1866:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:16,143    1866 |   catch (SBMLConstructorException)
2023-09-08T16:06:16,143         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:16,144   ./base/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:06:16,145   ./base/sbml/Event.cpp:1882:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:16,145    1882 |   catch (SBMLConstructorException)
2023-09-08T16:06:16,146         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:16,755   ./base/sbml/Event.cpp: In member function ‘virtual const Event* ListOfEvents::get(const std::string&) const’:
2023-09-08T16:06:16,756   ./base/sbml/Event.cpp:1764:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:16,756    1764 |   if (&sid == NULL) return NULL;
2023-09-08T16:06:16,757         |   ^~
2023-09-08T16:06:16,758   ./base/sbml/Event.cpp: In member function ‘Event& Event::operator=(const Event&)’:
2023-09-08T16:06:16,759   ./base/sbml/Event.cpp:171:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:16,760     171 |   if (&rhs == NULL)
2023-09-08T16:06:16,761         |   ^~
2023-09-08T16:06:16,764   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setId(const std::string&)’:
2023-09-08T16:06:16,765   ./base/sbml/Event.cpp:530:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:16,765     530 |   if (&(sid) == NULL)
2023-09-08T16:06:16,766         |   ^~
2023-09-08T16:06:16,766   ./base/sbml/Event.cpp: In member function ‘virtual int Event::setName(const std::string&)’:
2023-09-08T16:06:16,767   ./base/sbml/Event.cpp:556:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:16,767     556 |   if (&(name) == NULL)
2023-09-08T16:06:16,768         |   ^~
2023-09-08T16:06:16,768   ./base/sbml/Event.cpp: In member function ‘int Event::setTimeUnits(const std::string&)’:
2023-09-08T16:06:16,769   ./base/sbml/Event.cpp:704:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:16,769     704 |   if (&(sid) == NULL)
2023-09-08T16:06:16,770         |   ^~
2023-09-08T16:06:16,773   ./base/sbml/Event.cpp: In member function ‘virtual Event* ListOfEvents::remove(const std::string&)’:
2023-09-08T16:06:16,774   ./base/sbml/Event.cpp:1787:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:16,774    1787 |   if (&(sid) != NULL)
2023-09-08T16:06:16,775         |   ^~
2023-09-08T16:06:16,779   ./base/sbml/Event.cpp: In copy constructor ‘Event::Event(const Event&)’:
2023-09-08T16:06:16,779   ./base/sbml/Event.cpp:134:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:16,780     134 |   if (&orig == NULL)
2023-09-08T16:06:16,780         |   ^~
2023-09-08T16:06:24,011   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:06:24,012                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:06:24,012                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:06:24,013                    from ./base/sbml/EventAssignment.cpp:44:
2023-09-08T16:06:24,014   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:24,015      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:24,015         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:24,016   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:06:24,017                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:06:24,018                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:06:24,018                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:06:24,019                    from ./base/sbml/EventAssignment.cpp:33:
2023-09-08T16:06:24,020   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:24,020     117 |     struct unary_function
2023-09-08T16:06:24,021         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:24,322   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T16:06:24,323   ./base/sbml/EventAssignment.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:24,323     100 |   if (&orig == NULL)
2023-09-08T16:06:24,324         |             ^
2023-09-08T16:06:24,325   ./base/sbml/EventAssignment.cpp:96:58: note: ‘orig’ declared here
2023-09-08T16:06:24,326      96 | EventAssignment::EventAssignment (const EventAssignment& orig) :
2023-09-08T16:06:24,326         |                                   ~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:24,327   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T16:06:24,328   ./base/sbml/EventAssignment.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:06:24,329     122 |   if (&rhs == NULL)
2023-09-08T16:06:24,330         |            ^
2023-09-08T16:06:24,330   ./base/sbml/EventAssignment.cpp:120:68: note: ‘rhs’ declared here
2023-09-08T16:06:24,331     120 | EventAssignment& EventAssignment::operator=(const EventAssignment& rhs)
2023-09-08T16:06:24,331         |                                             ~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:24,332   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T16:06:24,332   ./base/sbml/EventAssignment.cpp:219:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:24,333     219 |   if (&(sid) == NULL)
2023-09-08T16:06:24,334         |              ^
2023-09-08T16:06:24,334   ./base/sbml/EventAssignment.cpp:217:50: note: ‘sid’ declared here
2023-09-08T16:06:24,335     217 | EventAssignment::setVariable (const std::string& sid)
2023-09-08T16:06:24,335         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:24,361   ./base/sbml/EventAssignment.cpp: At global scope:
2023-09-08T16:06:24,362   ./base/sbml/EventAssignment.cpp:846:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:24,363     846 | struct IdEqEA : public unary_function<SBase*, bool>
2023-09-08T16:06:24,363         |                        ^~~~~~~~~~~~~~
2023-09-08T16:06:24,364   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:24,365     117 |     struct unary_function
2023-09-08T16:06:24,365         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:24,366   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T16:06:24,367   ./base/sbml/EventAssignment.cpp:871:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:24,368     871 |   if (&(sid) == NULL)
2023-09-08T16:06:24,369         |              ^
2023-09-08T16:06:24,369   ./base/sbml/EventAssignment.cpp:867:49: note: ‘sid’ declared here
2023-09-08T16:06:24,370     867 | ListOfEventAssignments::get (const std::string& sid) const
2023-09-08T16:06:24,371         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:24,372   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T16:06:24,372   ./base/sbml/EventAssignment.cpp:899:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:24,373     899 |   if (&(sid) != NULL)
2023-09-08T16:06:24,374         |              ^
2023-09-08T16:06:24,375   ./base/sbml/EventAssignment.cpp:894:52: note: ‘sid’ declared here
2023-09-08T16:06:24,375     894 | ListOfEventAssignments::remove (const std::string& sid)
2023-09-08T16:06:24,376         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:24,381   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’:
2023-09-08T16:06:24,381   ./base/sbml/EventAssignment.cpp:992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:24,382     992 |   catch (SBMLConstructorException)
2023-09-08T16:06:24,383         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:24,384   ./base/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:06:24,384   ./base/sbml/EventAssignment.cpp:1008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:24,385    1008 |   catch (SBMLConstructorException)
2023-09-08T16:06:24,386         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:24,961   ./base/sbml/EventAssignment.cpp: In member function ‘virtual const EventAssignment* ListOfEventAssignments::get(const std::string&) const’:
2023-09-08T16:06:24,962   ./base/sbml/EventAssignment.cpp:871:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:24,963     871 |   if (&(sid) == NULL)
2023-09-08T16:06:24,963         |   ^~
2023-09-08T16:06:24,965   ./base/sbml/EventAssignment.cpp: In copy constructor ‘EventAssignment::EventAssignment(const EventAssignment&)’:
2023-09-08T16:06:24,966   ./base/sbml/EventAssignment.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:24,966     100 |   if (&orig == NULL)
2023-09-08T16:06:24,967         |   ^~
2023-09-08T16:06:24,967   ./base/sbml/EventAssignment.cpp: In member function ‘EventAssignment& EventAssignment::operator=(const EventAssignment&)’:
2023-09-08T16:06:24,968   ./base/sbml/EventAssignment.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:24,968     122 |   if (&rhs == NULL)
2023-09-08T16:06:24,969         |   ^~
2023-09-08T16:06:24,970   ./base/sbml/EventAssignment.cpp: In member function ‘int EventAssignment::setVariable(const std::string&)’:
2023-09-08T16:06:24,970   ./base/sbml/EventAssignment.cpp:219:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:24,971     219 |   if (&(sid) == NULL)
2023-09-08T16:06:24,971         |   ^~
2023-09-08T16:06:24,978   ./base/sbml/EventAssignment.cpp: In member function ‘virtual EventAssignment* ListOfEventAssignments::remove(const std::string&)’:
2023-09-08T16:06:24,979   ./base/sbml/EventAssignment.cpp:899:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:24,980     899 |   if (&(sid) != NULL)
2023-09-08T16:06:24,981         |   ^~
2023-09-08T16:06:33,079   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:06:33,080                    from ./base/sbml/FunctionDefinition.cpp:47:
2023-09-08T16:06:33,080   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:33,081      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:33,082         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:33,083   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:06:33,083                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:06:33,084                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:06:33,085                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:06:33,086                    from ./base/sbml/FunctionDefinition.cpp:35:
2023-09-08T16:06:33,086   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:33,087     117 |     struct unary_function
2023-09-08T16:06:33,088         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:33,435   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T16:06:33,435   ./base/sbml/FunctionDefinition.cpp:102:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:33,436     102 |   if (&orig == NULL)
2023-09-08T16:06:33,437         |             ^
2023-09-08T16:06:33,438   ./base/sbml/FunctionDefinition.cpp:98:67: note: ‘orig’ declared here
2023-09-08T16:06:33,438      98 | FunctionDefinition::FunctionDefinition (const FunctionDefinition& orig) :
2023-09-08T16:06:33,439         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:33,440   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T16:06:33,441   ./base/sbml/FunctionDefinition.cpp:125:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:06:33,442     125 |   if (&rhs == NULL)
2023-09-08T16:06:33,442         |            ^
2023-09-08T16:06:33,443   ./base/sbml/FunctionDefinition.cpp:123:77: note: ‘rhs’ declared here
2023-09-08T16:06:33,444     123 | FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition& rhs)
2023-09-08T16:06:33,444         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:33,445   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T16:06:33,445   ./base/sbml/FunctionDefinition.cpp:253:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:33,446     253 |   if (&(sid) == NULL)
2023-09-08T16:06:33,446         |              ^
2023-09-08T16:06:33,447   ./base/sbml/FunctionDefinition.cpp:242:47: note: ‘sid’ declared here
2023-09-08T16:06:33,448     242 | FunctionDefinition::setId (const std::string& sid)
2023-09-08T16:06:33,448         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:33,449   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T16:06:33,449   ./base/sbml/FunctionDefinition.cpp:278:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:06:33,450     278 |   if (&(name) == NULL)
2023-09-08T16:06:33,451         |               ^
2023-09-08T16:06:33,451   ./base/sbml/FunctionDefinition.cpp:273:49: note: ‘name’ declared here
2023-09-08T16:06:33,452     273 | FunctionDefinition::setName (const std::string& name)
2023-09-08T16:06:33,452         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:33,476   ./base/sbml/FunctionDefinition.cpp: At global scope:
2023-09-08T16:06:33,476   ./base/sbml/FunctionDefinition.cpp:994:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:33,477     994 | struct IdEqFD : public unary_function<SBase*, bool>
2023-09-08T16:06:33,478         |                        ^~~~~~~~~~~~~~
2023-09-08T16:06:33,479   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:33,480     117 |     struct unary_function
2023-09-08T16:06:33,480         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:33,481   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T16:06:33,482   ./base/sbml/FunctionDefinition.cpp:1019:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:33,483    1019 |   if (&(sid) == NULL)
2023-09-08T16:06:33,484         |              ^
2023-09-08T16:06:33,484   ./base/sbml/FunctionDefinition.cpp:1015:52: note: ‘sid’ declared here
2023-09-08T16:06:33,485    1015 | ListOfFunctionDefinitions::get (const std::string& sid) const
2023-09-08T16:06:33,486         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:33,486   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T16:06:33,487   ./base/sbml/FunctionDefinition.cpp:1047:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:33,488    1047 |   if (&(sid) != NULL)
2023-09-08T16:06:33,489         |              ^
2023-09-08T16:06:33,489   ./base/sbml/FunctionDefinition.cpp:1042:55: note: ‘sid’ declared here
2023-09-08T16:06:33,490    1042 | ListOfFunctionDefinitions::remove (const std::string& sid)
2023-09-08T16:06:33,491         |                                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:33,494   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’:
2023-09-08T16:06:33,495   ./base/sbml/FunctionDefinition.cpp:1124:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:33,496    1124 |   catch (SBMLConstructorException)
2023-09-08T16:06:33,497         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:33,497   ./base/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:06:33,498   ./base/sbml/FunctionDefinition.cpp:1140:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:33,498    1140 |   catch (SBMLConstructorException)
2023-09-08T16:06:33,499         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:34,079   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual const FunctionDefinition* ListOfFunctionDefinitions::get(const std::string&) const’:
2023-09-08T16:06:34,079   ./base/sbml/FunctionDefinition.cpp:1019:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:34,080    1019 |   if (&(sid) == NULL)
2023-09-08T16:06:34,080         |   ^~
2023-09-08T16:06:34,082   ./base/sbml/FunctionDefinition.cpp: In copy constructor ‘FunctionDefinition::FunctionDefinition(const FunctionDefinition&)’:
2023-09-08T16:06:34,083   ./base/sbml/FunctionDefinition.cpp:102:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:34,083     102 |   if (&orig == NULL)
2023-09-08T16:06:34,084         |   ^~
2023-09-08T16:06:34,084   ./base/sbml/FunctionDefinition.cpp: In member function ‘FunctionDefinition& FunctionDefinition::operator=(const FunctionDefinition&)’:
2023-09-08T16:06:34,085   ./base/sbml/FunctionDefinition.cpp:125:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:34,086     125 |   if (&rhs == NULL)
2023-09-08T16:06:34,086         |   ^~
2023-09-08T16:06:34,087   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setId(const std::string&)’:
2023-09-08T16:06:34,087   ./base/sbml/FunctionDefinition.cpp:253:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:34,088     253 |   if (&(sid) == NULL)
2023-09-08T16:06:34,089         |   ^~
2023-09-08T16:06:34,089   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual int FunctionDefinition::setName(const std::string&)’:
2023-09-08T16:06:34,090   ./base/sbml/FunctionDefinition.cpp:278:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:34,090     278 |   if (&(name) == NULL)
2023-09-08T16:06:34,091         |   ^~
2023-09-08T16:06:34,094   ./base/sbml/FunctionDefinition.cpp: In member function ‘virtual FunctionDefinition* ListOfFunctionDefinitions::remove(const std::string&)’:
2023-09-08T16:06:34,094   ./base/sbml/FunctionDefinition.cpp:1047:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:34,095    1047 |   if (&(sid) != NULL)
2023-09-08T16:06:34,095         |   ^~
2023-09-08T16:06:39,800   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:06:39,801                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:06:39,801                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:06:39,802                    from ./base/sbml/InitialAssignment.cpp:43:
2023-09-08T16:06:39,803   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:39,803      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:39,804         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:39,805   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:06:39,806                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:06:39,806                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:06:39,807                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:06:39,808                    from ./base/sbml/InitialAssignment.cpp:33:
2023-09-08T16:06:39,808   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:39,809     117 |     struct unary_function
2023-09-08T16:06:39,810         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:40,097   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T16:06:40,097   ./base/sbml/InitialAssignment.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:40,098      97 |   if (&orig == NULL)
2023-09-08T16:06:40,098         |             ^
2023-09-08T16:06:40,099   ./base/sbml/InitialAssignment.cpp:93:64: note: ‘orig’ declared here
2023-09-08T16:06:40,100      93 | InitialAssignment::InitialAssignment (const InitialAssignment& orig) :
2023-09-08T16:06:40,100         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:40,101   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T16:06:40,101   ./base/sbml/InitialAssignment.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:06:40,102     119 |   if (&rhs == NULL)
2023-09-08T16:06:40,103         |            ^
2023-09-08T16:06:40,103   ./base/sbml/InitialAssignment.cpp:117:74: note: ‘rhs’ declared here
2023-09-08T16:06:40,104     117 | InitialAssignment& InitialAssignment::operator=(const InitialAssignment& rhs)
2023-09-08T16:06:40,105         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:40,106   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T16:06:40,106   ./base/sbml/InitialAssignment.cpp:232:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:40,107     232 |   if (&(sid) == NULL)
2023-09-08T16:06:40,108         |              ^
2023-09-08T16:06:40,109   ./base/sbml/InitialAssignment.cpp:230:50: note: ‘sid’ declared here
2023-09-08T16:06:40,110     230 | InitialAssignment::setSymbol (const std::string& sid)
2023-09-08T16:06:40,110         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:40,135   ./base/sbml/InitialAssignment.cpp: At global scope:
2023-09-08T16:06:40,136   ./base/sbml/InitialAssignment.cpp:843:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:40,137     843 | struct IdEqIA : public unary_function<SBase*, bool>
2023-09-08T16:06:40,137         |                        ^~~~~~~~~~~~~~
2023-09-08T16:06:40,138   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:40,139     117 |     struct unary_function
2023-09-08T16:06:40,139         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:40,140   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T16:06:40,141   ./base/sbml/InitialAssignment.cpp:868:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:40,142     868 |   if (&(sid) == NULL)
2023-09-08T16:06:40,142         |              ^
2023-09-08T16:06:40,143   ./base/sbml/InitialAssignment.cpp:864:51: note: ‘sid’ declared here
2023-09-08T16:06:40,144     864 | ListOfInitialAssignments::get (const std::string& sid) const
2023-09-08T16:06:40,145         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:40,145   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T16:06:40,146   ./base/sbml/InitialAssignment.cpp:896:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:40,147     896 |   if (&(sid) != NULL)
2023-09-08T16:06:40,148         |              ^
2023-09-08T16:06:40,148   ./base/sbml/InitialAssignment.cpp:891:54: note: ‘sid’ declared here
2023-09-08T16:06:40,149     891 | ListOfInitialAssignments::remove (const std::string& sid)
2023-09-08T16:06:40,150         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:40,154   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’:
2023-09-08T16:06:40,154   ./base/sbml/InitialAssignment.cpp:989:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:40,155     989 |   catch (SBMLConstructorException)
2023-09-08T16:06:40,156         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:40,156   ./base/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:06:40,157   ./base/sbml/InitialAssignment.cpp:1005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:40,157    1005 |   catch (SBMLConstructorException)
2023-09-08T16:06:40,158         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:40,733   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual const InitialAssignment* ListOfInitialAssignments::get(const std::string&) const’:
2023-09-08T16:06:40,733   ./base/sbml/InitialAssignment.cpp:868:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:40,734     868 |   if (&(sid) == NULL)
2023-09-08T16:06:40,734         |   ^~
2023-09-08T16:06:40,736   ./base/sbml/InitialAssignment.cpp: In copy constructor ‘InitialAssignment::InitialAssignment(const InitialAssignment&)’:
2023-09-08T16:06:40,737   ./base/sbml/InitialAssignment.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:40,738      97 |   if (&orig == NULL)
2023-09-08T16:06:40,738         |   ^~
2023-09-08T16:06:40,739   ./base/sbml/InitialAssignment.cpp: In member function ‘InitialAssignment& InitialAssignment::operator=(const InitialAssignment&)’:
2023-09-08T16:06:40,740   ./base/sbml/InitialAssignment.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:40,741     119 |   if (&rhs == NULL)
2023-09-08T16:06:40,741         |   ^~
2023-09-08T16:06:40,742   ./base/sbml/InitialAssignment.cpp: In member function ‘int InitialAssignment::setSymbol(const std::string&)’:
2023-09-08T16:06:40,743   ./base/sbml/InitialAssignment.cpp:232:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:40,744     232 |   if (&(sid) == NULL)
2023-09-08T16:06:40,744         |   ^~
2023-09-08T16:06:40,749   ./base/sbml/InitialAssignment.cpp: In member function ‘virtual InitialAssignment* ListOfInitialAssignments::remove(const std::string&)’:
2023-09-08T16:06:40,750   ./base/sbml/InitialAssignment.cpp:896:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:40,750     896 |   if (&(sid) != NULL)
2023-09-08T16:06:40,751         |   ^~
2023-09-08T16:06:46,459   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:06:46,459                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:06:46,460                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:06:46,461                    from ./base/sbml/KineticLaw.cpp:45:
2023-09-08T16:06:46,462   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:46,462      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:46,463         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:46,464   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:06:46,465                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:06:46,465                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:06:46,466                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:06:46,466                    from ./base/sbml/KineticLaw.cpp:33:
2023-09-08T16:06:46,466   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:46,467     117 |     struct unary_function
2023-09-08T16:06:46,468         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:46,759   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T16:06:46,759   ./base/sbml/KineticLaw.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:46,760     117 |   if (&orig == NULL)
2023-09-08T16:06:46,761         |             ^
2023-09-08T16:06:46,761   ./base/sbml/KineticLaw.cpp:111:43: note: ‘orig’ declared here
2023-09-08T16:06:46,762     111 | KineticLaw::KineticLaw (const KineticLaw& orig) :
2023-09-08T16:06:46,762         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:46,763   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T16:06:46,764   ./base/sbml/KineticLaw.cpp:143:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:06:46,764     143 |   if (&rhs == NULL)
2023-09-08T16:06:46,765         |            ^
2023-09-08T16:06:46,765   ./base/sbml/KineticLaw.cpp:141:53: note: ‘rhs’ declared here
2023-09-08T16:06:46,766     141 | KineticLaw& KineticLaw::operator=(const KineticLaw& rhs)
2023-09-08T16:06:46,767         |                                   ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:46,779   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T16:06:46,779   ./base/sbml/KineticLaw.cpp:363:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T16:06:46,780     363 |   if (&(formula) == NULL)
2023-09-08T16:06:46,781         |                  ^
2023-09-08T16:06:46,782   ./base/sbml/KineticLaw.cpp:361:44: note: ‘formula’ declared here
2023-09-08T16:06:46,782     361 | KineticLaw::setFormula (const std::string& formula)
2023-09-08T16:06:46,783         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:06:46,784   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T16:06:46,785   ./base/sbml/KineticLaw.cpp:435:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:46,786     435 |   if (&(sid) == NULL)
2023-09-08T16:06:46,786         |              ^
2023-09-08T16:06:46,787   ./base/sbml/KineticLaw.cpp:432:46: note: ‘sid’ declared here
2023-09-08T16:06:46,788     432 | KineticLaw::setTimeUnits (const std::string& sid)
2023-09-08T16:06:46,788         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:46,789   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T16:06:46,790   ./base/sbml/KineticLaw.cpp:463:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:46,790     463 |   if (&(sid) == NULL)
2023-09-08T16:06:46,791         |              ^
2023-09-08T16:06:46,792   ./base/sbml/KineticLaw.cpp:460:51: note: ‘sid’ declared here
2023-09-08T16:06:46,792     460 | KineticLaw::setSubstanceUnits (const std::string& sid)
2023-09-08T16:06:46,793         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:46,804   ./base/sbml/KineticLaw.cpp: In member function ‘Parameter* KineticLaw::removeParameter(const std::string&)’:
2023-09-08T16:06:46,805   ./base/sbml/KineticLaw.cpp:1034:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:46,806    1034 |   return (&sid != NULL) ? mParameters.remove(sid) : NULL;
2023-09-08T16:06:46,806         |                ^
2023-09-08T16:06:46,807   ./base/sbml/KineticLaw.cpp:1032:49: note: ‘sid’ declared here
2023-09-08T16:06:46,807    1032 | KineticLaw::removeParameter (const std::string& sid)
2023-09-08T16:06:46,808         |                              ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:46,809   ./base/sbml/KineticLaw.cpp: In member function ‘LocalParameter* KineticLaw::removeLocalParameter(const std::string&)’:
2023-09-08T16:06:46,809   ./base/sbml/KineticLaw.cpp:1045:16: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:46,810    1045 |   return (&sid != NULL) ? mLocalParameters.remove(sid) : NULL;
2023-09-08T16:06:46,810         |                ^
2023-09-08T16:06:46,811   ./base/sbml/KineticLaw.cpp:1043:54: note: ‘sid’ declared here
2023-09-08T16:06:46,811    1043 | KineticLaw::removeLocalParameter (const std::string& sid)
2023-09-08T16:06:46,812         |                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:46,838   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’:
2023-09-08T16:06:46,838   ./base/sbml/KineticLaw.cpp:1611:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:46,839    1611 |   catch (SBMLConstructorException)
2023-09-08T16:06:46,839         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:46,840   ./base/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:06:46,841   ./base/sbml/KineticLaw.cpp:1627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:46,842    1627 |   catch (SBMLConstructorException)
2023-09-08T16:06:46,842         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:47,382   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setFormula(const std::string&)’:
2023-09-08T16:06:47,382   ./base/sbml/KineticLaw.cpp:363:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:47,383     363 |   if (&(formula) == NULL)
2023-09-08T16:06:47,384         |   ^~
2023-09-08T16:06:47,388   ./base/sbml/KineticLaw.cpp: In member function ‘KineticLaw& KineticLaw::operator=(const KineticLaw&)’:
2023-09-08T16:06:47,389   ./base/sbml/KineticLaw.cpp:143:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:47,390     143 |   if (&rhs == NULL)
2023-09-08T16:06:47,390         |   ^~
2023-09-08T16:06:47,393   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setTimeUnits(const std::string&)’:
2023-09-08T16:06:47,393   ./base/sbml/KineticLaw.cpp:435:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:47,394     435 |   if (&(sid) == NULL)
2023-09-08T16:06:47,395         |   ^~
2023-09-08T16:06:47,395   ./base/sbml/KineticLaw.cpp: In member function ‘int KineticLaw::setSubstanceUnits(const std::string&)’:
2023-09-08T16:06:47,396   ./base/sbml/KineticLaw.cpp:463:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:47,397     463 |   if (&(sid) == NULL)
2023-09-08T16:06:47,397         |   ^~
2023-09-08T16:06:47,401   ./base/sbml/KineticLaw.cpp: In copy constructor ‘KineticLaw::KineticLaw(const KineticLaw&)’:
2023-09-08T16:06:47,402   ./base/sbml/KineticLaw.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:47,403     117 |   if (&orig == NULL)
2023-09-08T16:06:47,404         |   ^~
2023-09-08T16:06:53,152   In file included from ./base/sbml/ListOf.cpp:37:
2023-09-08T16:06:53,153   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:53,154      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:53,154         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:53,155   In file included from /usr/include/c++/12/functional:49,
2023-09-08T16:06:53,155                    from ./base/sbml/ListOf.cpp:34:
2023-09-08T16:06:53,156   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:53,156     117 |     struct unary_function
2023-09-08T16:06:53,157         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:53,367   ./base/sbml/ListOf.cpp:76:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:53,368      76 | struct Delete : public unary_function<SBase*, void>
2023-09-08T16:06:53,368         |                        ^~~~~~~~~~~~~~
2023-09-08T16:06:53,369   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:53,369     117 |     struct unary_function
2023-09-08T16:06:53,370         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:53,371   ./base/sbml/ListOf.cpp:94:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:53,371      94 | struct Clone : public unary_function<SBase*, SBase*>
2023-09-08T16:06:53,372         |                       ^~~~~~~~~~~~~~
2023-09-08T16:06:53,373   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:53,373     117 |     struct unary_function
2023-09-08T16:06:53,374         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:53,394   ./base/sbml/ListOf.cpp:453:33: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:53,395     453 | struct SetSBMLDocument : public unary_function<SBase*, void>
2023-09-08T16:06:53,396         |                                 ^~~~~~~~~~~~~~
2023-09-08T16:06:53,396   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:53,397     117 |     struct unary_function
2023-09-08T16:06:53,398         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:53,398   ./base/sbml/ListOf.cpp:465:37: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:53,399     465 | struct SetParentSBMLObject : public unary_function<SBase*, void>
2023-09-08T16:06:53,400         |                                     ^~~~~~~~~~~~~~
2023-09-08T16:06:53,400   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:53,401     117 |     struct unary_function
2023-09-08T16:06:53,402         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:53,403   ./base/sbml/ListOf.cpp:537:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:53,403     537 | struct Write : public unary_function<SBase*, void>
2023-09-08T16:06:53,404         |                       ^~~~~~~~~~~~~~
2023-09-08T16:06:53,405   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:53,406     117 |     struct unary_function
2023-09-08T16:06:53,406         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:58,402   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:06:58,403                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:06:58,403                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:06:58,404                    from ./base/sbml/LocalParameter.cpp:42:
2023-09-08T16:06:58,405   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:58,406      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:06:58,406         |                           ^~~~~~~~~~~~~~
2023-09-08T16:06:58,407   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:06:58,408                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:06:58,408                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:06:58,409                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:06:58,409                    from ./base/sbml/LocalParameter.cpp:35:
2023-09-08T16:06:58,410   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:58,411     117 |     struct unary_function
2023-09-08T16:06:58,411         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:58,696   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T16:06:58,697   ./base/sbml/LocalParameter.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:58,697     103 |   if (&orig == NULL)
2023-09-08T16:06:58,698         |             ^
2023-09-08T16:06:58,698   ./base/sbml/LocalParameter.cpp:100:54: note: ‘orig’ declared here
2023-09-08T16:06:58,699     100 | LocalParameter::LocalParameter(const LocalParameter& orig) :
2023-09-08T16:06:58,700         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:58,700   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T16:06:58,701   ./base/sbml/LocalParameter.cpp:116:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:06:58,701     116 |   if (&orig == NULL)
2023-09-08T16:06:58,702         |             ^
2023-09-08T16:06:58,703   ./base/sbml/LocalParameter.cpp:113:49: note: ‘orig’ declared here
2023-09-08T16:06:58,703     113 | LocalParameter::LocalParameter(const Parameter& orig) :
2023-09-08T16:06:58,704         |                                ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:06:58,705   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T16:06:58,706   ./base/sbml/LocalParameter.cpp:126:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:06:58,706     126 |   if (&rhs == NULL)
2023-09-08T16:06:58,707         |            ^
2023-09-08T16:06:58,708   ./base/sbml/LocalParameter.cpp:124:65: note: ‘rhs’ declared here
2023-09-08T16:06:58,709     124 | LocalParameter& LocalParameter::operator=(const LocalParameter& rhs)
2023-09-08T16:06:58,710         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:58,711   ./base/sbml/LocalParameter.cpp: At global scope:
2023-09-08T16:06:58,712   ./base/sbml/LocalParameter.cpp:386:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:06:58,713     386 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T16:06:58,714         |                       ^~~~~~~~~~~~~~
2023-09-08T16:06:58,714   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:06:58,715     117 |     struct unary_function
2023-09-08T16:06:58,716         |            ^~~~~~~~~~~~~~
2023-09-08T16:06:58,717   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T16:06:58,718   ./base/sbml/LocalParameter.cpp:411:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:58,718     411 |   if (&(sid) == NULL)
2023-09-08T16:06:58,719         |              ^
2023-09-08T16:06:58,720   ./base/sbml/LocalParameter.cpp:407:48: note: ‘sid’ declared here
2023-09-08T16:06:58,721     407 | ListOfLocalParameters::get (const std::string& sid) const
2023-09-08T16:06:58,722         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:58,724   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T16:06:58,725   ./base/sbml/LocalParameter.cpp:453:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:06:58,725     453 |   if (&(sid) != NULL)
2023-09-08T16:06:58,726         |              ^
2023-09-08T16:06:58,727   ./base/sbml/LocalParameter.cpp:448:51: note: ‘sid’ declared here
2023-09-08T16:06:58,727     448 | ListOfLocalParameters::remove (const std::string& sid)
2023-09-08T16:06:58,728         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:06:58,732   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’:
2023-09-08T16:06:58,733   ./base/sbml/LocalParameter.cpp:533:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:58,734     533 |   catch (SBMLConstructorException)
2023-09-08T16:06:58,734         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:58,735   ./base/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:06:58,735   ./base/sbml/LocalParameter.cpp:549:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:06:58,736     549 |   catch (SBMLConstructorException)
2023-09-08T16:06:58,736         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:06:59,297   ./base/sbml/LocalParameter.cpp: In member function ‘virtual const LocalParameter* ListOfLocalParameters::get(const std::string&) const’:
2023-09-08T16:06:59,298   ./base/sbml/LocalParameter.cpp:411:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:59,298     411 |   if (&(sid) == NULL)
2023-09-08T16:06:59,299         |   ^~
2023-09-08T16:06:59,300   ./base/sbml/LocalParameter.cpp: In copy constructor ‘LocalParameter::LocalParameter(const LocalParameter&)’:
2023-09-08T16:06:59,301   ./base/sbml/LocalParameter.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:59,302     103 |   if (&orig == NULL)
2023-09-08T16:06:59,302         |   ^~
2023-09-08T16:06:59,303   ./base/sbml/LocalParameter.cpp: In constructor ‘LocalParameter::LocalParameter(const Parameter&)’:
2023-09-08T16:06:59,304   ./base/sbml/LocalParameter.cpp:116:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:59,305     116 |   if (&orig == NULL)
2023-09-08T16:06:59,305         |   ^~
2023-09-08T16:06:59,306   ./base/sbml/LocalParameter.cpp: In member function ‘LocalParameter& LocalParameter::operator=(const LocalParameter&)’:
2023-09-08T16:06:59,307   ./base/sbml/LocalParameter.cpp:126:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:59,308     126 |   if (&rhs == NULL)
2023-09-08T16:06:59,308         |   ^~
2023-09-08T16:06:59,309   ./base/sbml/LocalParameter.cpp: In member function ‘virtual LocalParameter* ListOfLocalParameters::remove(const std::string&)’:
2023-09-08T16:06:59,310   ./base/sbml/LocalParameter.cpp:453:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:06:59,310     453 |   if (&(sid) != NULL)
2023-09-08T16:06:59,311         |   ^~
2023-09-08T16:07:03,797   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:07:03,798                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:07:03,798                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:07:03,799                    from ./base/sbml/Model.cpp:41:
2023-09-08T16:07:03,800   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:03,800      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:07:03,801         |                           ^~~~~~~~~~~~~~
2023-09-08T16:07:03,802   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:07:03,803                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:07:03,803                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:07:03,804                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:07:03,804                    from ./base/sbml/Model.cpp:33:
2023-09-08T16:07:03,805   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:03,805     117 |     struct unary_function
2023-09-08T16:07:03,806         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:04,188   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T16:07:04,189   ./base/sbml/Model.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:07:04,190     175 |   if (&orig == NULL)
2023-09-08T16:07:04,190         |             ^
2023-09-08T16:07:04,191   ./base/sbml/Model.cpp:160:27: note: ‘orig’ declared here
2023-09-08T16:07:04,191     160 | Model::Model(const Model& orig) :
2023-09-08T16:07:04,192         |              ~~~~~~~~~~~~~^~~~
2023-09-08T16:07:04,196   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T16:07:04,197   ./base/sbml/Model.cpp:216:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:07:04,197     216 |   if (&rhs == NULL)
2023-09-08T16:07:04,198         |            ^
2023-09-08T16:07:04,198   ./base/sbml/Model.cpp:214:38: note: ‘rhs’ declared here
2023-09-08T16:07:04,199     214 | Model& Model::operator=(const Model& rhs)
2023-09-08T16:07:04,199         |                         ~~~~~~~~~~~~~^~~
2023-09-08T16:07:04,253   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T16:07:04,254   ./base/sbml/Model.cpp:718:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:04,254     718 |   if (&(sid) == NULL)
2023-09-08T16:07:04,255         |              ^
2023-09-08T16:07:04,256   ./base/sbml/Model.cpp:707:34: note: ‘sid’ declared here
2023-09-08T16:07:04,257     707 | Model::setId (const std::string& sid)
2023-09-08T16:07:04,258         |               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:04,258   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T16:07:04,259   ./base/sbml/Model.cpp:743:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:07:04,260     743 |   if (&(name) == NULL)
2023-09-08T16:07:04,260         |               ^
2023-09-08T16:07:04,261   ./base/sbml/Model.cpp:738:36: note: ‘name’ declared here
2023-09-08T16:07:04,262     738 | Model::setName (const std::string& name)
2023-09-08T16:07:04,262         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:07:04,263   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T16:07:04,264   ./base/sbml/Model.cpp:773:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T16:07:04,264     773 |   if (&(units) == NULL)
2023-09-08T16:07:04,265         |                ^
2023-09-08T16:07:04,266   ./base/sbml/Model.cpp:771:46: note: ‘units’ declared here
2023-09-08T16:07:04,266     771 | Model::setSubstanceUnits (const std::string& units)
2023-09-08T16:07:04,267         |                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:07:04,268   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T16:07:04,268   ./base/sbml/Model.cpp:799:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T16:07:04,269     799 |   if (&(units) == NULL)
2023-09-08T16:07:04,270         |                ^
2023-09-08T16:07:04,271   ./base/sbml/Model.cpp:797:41: note: ‘units’ declared here
2023-09-08T16:07:04,272     797 | Model::setTimeUnits (const std::string& units)
2023-09-08T16:07:04,272         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:07:04,272   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T16:07:04,273   ./base/sbml/Model.cpp:825:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T16:07:04,273     825 |   if (&(units) == NULL)
2023-09-08T16:07:04,274         |                ^
2023-09-08T16:07:04,274   ./base/sbml/Model.cpp:823:43: note: ‘units’ declared here
2023-09-08T16:07:04,275     823 | Model::setVolumeUnits (const std::string& units)
2023-09-08T16:07:04,275         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:07:04,276   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T16:07:04,276   ./base/sbml/Model.cpp:851:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T16:07:04,277     851 |   if (&(units) == NULL)
2023-09-08T16:07:04,277         |                ^
2023-09-08T16:07:04,278   ./base/sbml/Model.cpp:849:41: note: ‘units’ declared here
2023-09-08T16:07:04,278     849 | Model::setAreaUnits (const std::string& units)
2023-09-08T16:07:04,279         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:07:04,279   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T16:07:04,280   ./base/sbml/Model.cpp:877:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T16:07:04,280     877 |   if (&(units) == NULL)
2023-09-08T16:07:04,281         |                ^
2023-09-08T16:07:04,282   ./base/sbml/Model.cpp:875:43: note: ‘units’ declared here
2023-09-08T16:07:04,283     875 | Model::setLengthUnits (const std::string& units)
2023-09-08T16:07:04,283         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:07:04,284   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T16:07:04,285   ./base/sbml/Model.cpp:903:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T16:07:04,285     903 |   if (&(units) == NULL)
2023-09-08T16:07:04,286         |                ^
2023-09-08T16:07:04,287   ./base/sbml/Model.cpp:901:43: note: ‘units’ declared here
2023-09-08T16:07:04,288     901 | Model::setExtentUnits (const std::string& units)
2023-09-08T16:07:04,288         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:07:04,289   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T16:07:04,290   ./base/sbml/Model.cpp:929:13: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T16:07:04,290     929 |   if (&(id) == NULL)
2023-09-08T16:07:04,291         |             ^
2023-09-08T16:07:04,292   ./base/sbml/Model.cpp:927:48: note: ‘id’ declared here
2023-09-08T16:07:04,292     927 | Model::setConversionFactor (const std::string& id)
2023-09-08T16:07:04,293         |                             ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T16:07:04,497   ./base/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’:
2023-09-08T16:07:04,498   ./base/sbml/Model.cpp:6111:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:04,499    6111 |   catch (SBMLConstructorException)
2023-09-08T16:07:04,500         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:04,500   ./base/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:04,501   ./base/sbml/Model.cpp:6127:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:04,502    6127 |   catch (SBMLConstructorException)
2023-09-08T16:07:04,503         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:05,303   ./base/sbml/Model.cpp: In member function ‘Model& Model::operator=(const Model&)’:
2023-09-08T16:07:05,303   ./base/sbml/Model.cpp:216:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,304     216 |   if (&rhs == NULL)
2023-09-08T16:07:05,304         |   ^~
2023-09-08T16:07:05,321   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setId(const std::string&)’:
2023-09-08T16:07:05,322   ./base/sbml/Model.cpp:718:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,322     718 |   if (&(sid) == NULL)
2023-09-08T16:07:05,323         |   ^~
2023-09-08T16:07:05,323   ./base/sbml/Model.cpp: In member function ‘virtual int Model::setName(const std::string&)’:
2023-09-08T16:07:05,324   ./base/sbml/Model.cpp:743:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,324     743 |   if (&(name) == NULL)
2023-09-08T16:07:05,325         |   ^~
2023-09-08T16:07:05,325   ./base/sbml/Model.cpp: In member function ‘int Model::setSubstanceUnits(const std::string&)’:
2023-09-08T16:07:05,326   ./base/sbml/Model.cpp:773:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,326     773 |   if (&(units) == NULL)
2023-09-08T16:07:05,327         |   ^~
2023-09-08T16:07:05,327   ./base/sbml/Model.cpp: In member function ‘int Model::setTimeUnits(const std::string&)’:
2023-09-08T16:07:05,328   ./base/sbml/Model.cpp:799:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,328     799 |   if (&(units) == NULL)
2023-09-08T16:07:05,329         |   ^~
2023-09-08T16:07:05,330   ./base/sbml/Model.cpp: In member function ‘int Model::setVolumeUnits(const std::string&)’:
2023-09-08T16:07:05,330   ./base/sbml/Model.cpp:825:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,331     825 |   if (&(units) == NULL)
2023-09-08T16:07:05,332         |   ^~
2023-09-08T16:07:05,333   ./base/sbml/Model.cpp: In member function ‘int Model::setAreaUnits(const std::string&)’:
2023-09-08T16:07:05,333   ./base/sbml/Model.cpp:851:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,334     851 |   if (&(units) == NULL)
2023-09-08T16:07:05,335         |   ^~
2023-09-08T16:07:05,335   ./base/sbml/Model.cpp: In member function ‘int Model::setLengthUnits(const std::string&)’:
2023-09-08T16:07:05,336   ./base/sbml/Model.cpp:877:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,337     877 |   if (&(units) == NULL)
2023-09-08T16:07:05,338         |   ^~
2023-09-08T16:07:05,338   ./base/sbml/Model.cpp: In member function ‘int Model::setExtentUnits(const std::string&)’:
2023-09-08T16:07:05,339   ./base/sbml/Model.cpp:903:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,340     903 |   if (&(units) == NULL)
2023-09-08T16:07:05,340         |   ^~
2023-09-08T16:07:05,341   ./base/sbml/Model.cpp: In member function ‘int Model::setConversionFactor(const std::string&)’:
2023-09-08T16:07:05,342   ./base/sbml/Model.cpp:929:3: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,342     929 |   if (&(id) == NULL)
2023-09-08T16:07:05,343         |   ^~
2023-09-08T16:07:05,364   ./base/sbml/Model.cpp: In copy constructor ‘Model::Model(const Model&)’:
2023-09-08T16:07:05,365   ./base/sbml/Model.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:05,366     175 |   if (&orig == NULL)
2023-09-08T16:07:05,366         |   ^~
2023-09-08T16:07:19,953   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:07:19,953                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:07:19,954                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:07:19,955                    from ./base/sbml/ModifierSpeciesReference.cpp:47:
2023-09-08T16:07:19,955   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:19,956      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:07:19,956         |                           ^~~~~~~~~~~~~~
2023-09-08T16:07:19,957   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:07:19,958                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:07:19,958                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:07:19,959                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:07:19,959                    from ./base/sbml/ModifierSpeciesReference.cpp:35:
2023-09-08T16:07:19,960   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:19,960     117 |     struct unary_function
2023-09-08T16:07:19,961         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:20,270   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)’:
2023-09-08T16:07:20,270   ./base/sbml/ModifierSpeciesReference.cpp:163:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:20,271     163 |   catch (SBMLConstructorException)
2023-09-08T16:07:20,272         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:20,272   ./base/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:20,273   ./base/sbml/ModifierSpeciesReference.cpp:179:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:20,274     179 |   catch (SBMLConstructorException)
2023-09-08T16:07:20,274         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:24,485   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:07:24,486                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:07:24,487                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:07:24,487                    from ./base/sbml/Parameter.cpp:42:
2023-09-08T16:07:24,488   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:24,489      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:07:24,490         |                           ^~~~~~~~~~~~~~
2023-09-08T16:07:24,491   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:07:24,491                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:07:24,492                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:07:24,493                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:07:24,493                    from ./base/sbml/Parameter.cpp:35:
2023-09-08T16:07:24,494   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:24,495     117 |     struct unary_function
2023-09-08T16:07:24,495         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:24,786   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T16:07:24,786   ./base/sbml/Parameter.cpp:131:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:07:24,787     131 |   if (&orig == NULL)
2023-09-08T16:07:24,788         |             ^
2023-09-08T16:07:24,789   ./base/sbml/Parameter.cpp:128:39: note: ‘orig’ declared here
2023-09-08T16:07:24,789     128 | Parameter::Parameter(const Parameter& orig) :
2023-09-08T16:07:24,790         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:07:24,791   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T16:07:24,792   ./base/sbml/Parameter.cpp:155:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:07:24,793     155 |   if (&rhs == NULL)
2023-09-08T16:07:24,793         |            ^
2023-09-08T16:07:24,794   ./base/sbml/Parameter.cpp:153:50: note: ‘rhs’ declared here
2023-09-08T16:07:24,794     153 | Parameter& Parameter::operator=(const Parameter& rhs)
2023-09-08T16:07:24,795         |                                 ~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:24,795   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T16:07:24,796   ./base/sbml/Parameter.cpp:342:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:24,797     342 |   if (&(sid) == NULL)
2023-09-08T16:07:24,797         |              ^
2023-09-08T16:07:24,798   ./base/sbml/Parameter.cpp:331:38: note: ‘sid’ declared here
2023-09-08T16:07:24,798     331 | Parameter::setId (const std::string& sid)
2023-09-08T16:07:24,799         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:24,799   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T16:07:24,800   ./base/sbml/Parameter.cpp:367:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:07:24,801     367 |   if (&(name) == NULL)
2023-09-08T16:07:24,801         |               ^
2023-09-08T16:07:24,802   ./base/sbml/Parameter.cpp:362:40: note: ‘name’ declared here
2023-09-08T16:07:24,802     362 | Parameter::setName (const std::string& name)
2023-09-08T16:07:24,803         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:07:24,804   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T16:07:24,805   ./base/sbml/Parameter.cpp:409:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T16:07:24,806     409 |   if (&(units) == NULL)
2023-09-08T16:07:24,806         |                ^
2023-09-08T16:07:24,807   ./base/sbml/Parameter.cpp:407:41: note: ‘units’ declared here
2023-09-08T16:07:24,808     407 | Parameter::setUnits (const std::string& units)
2023-09-08T16:07:24,809         |                      ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:07:24,864   ./base/sbml/Parameter.cpp: At global scope:
2023-09-08T16:07:24,865   ./base/sbml/Parameter.cpp:1523:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:24,865    1523 | struct IdEqP : public unary_function<SBase*, bool>
2023-09-08T16:07:24,866         |                       ^~~~~~~~~~~~~~
2023-09-08T16:07:24,867   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:24,867     117 |     struct unary_function
2023-09-08T16:07:24,868         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:24,869   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T16:07:24,870   ./base/sbml/Parameter.cpp:1546:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:24,870    1546 |   if (&(sid) == NULL)
2023-09-08T16:07:24,871         |              ^
2023-09-08T16:07:24,872   ./base/sbml/Parameter.cpp:1542:43: note: ‘sid’ declared here
2023-09-08T16:07:24,872    1542 | ListOfParameters::get (const std::string& sid) const
2023-09-08T16:07:24,873         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:24,874   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T16:07:24,875   ./base/sbml/Parameter.cpp:1573:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:24,875    1573 |   if (&(sid) != NULL)
2023-09-08T16:07:24,876         |              ^
2023-09-08T16:07:24,877   ./base/sbml/Parameter.cpp:1568:46: note: ‘sid’ declared here
2023-09-08T16:07:24,877    1568 | ListOfParameters::remove (const std::string& sid)
2023-09-08T16:07:24,878         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:24,882   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’:
2023-09-08T16:07:24,882   ./base/sbml/Parameter.cpp:1653:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:24,883    1653 |   catch (SBMLConstructorException)
2023-09-08T16:07:24,883         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:24,884   ./base/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:24,885   ./base/sbml/Parameter.cpp:1669:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:24,885    1669 |   catch (SBMLConstructorException)
2023-09-08T16:07:24,886         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:25,484   ./base/sbml/Parameter.cpp: In member function ‘virtual const Parameter* ListOfParameters::get(const std::string&) const’:
2023-09-08T16:07:25,485   ./base/sbml/Parameter.cpp:1546:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:25,485    1546 |   if (&(sid) == NULL)
2023-09-08T16:07:25,486         |   ^~
2023-09-08T16:07:25,488   ./base/sbml/Parameter.cpp: In copy constructor ‘Parameter::Parameter(const Parameter&)’:
2023-09-08T16:07:25,488   ./base/sbml/Parameter.cpp:131:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:25,489     131 |   if (&orig == NULL)
2023-09-08T16:07:25,490         |   ^~
2023-09-08T16:07:25,490   ./base/sbml/Parameter.cpp: In member function ‘Parameter& Parameter::operator=(const Parameter&)’:
2023-09-08T16:07:25,491   ./base/sbml/Parameter.cpp:155:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:25,492     155 |   if (&rhs == NULL)
2023-09-08T16:07:25,492         |   ^~
2023-09-08T16:07:25,493   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setId(const std::string&)’:
2023-09-08T16:07:25,494   ./base/sbml/Parameter.cpp:342:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:25,495     342 |   if (&(sid) == NULL)
2023-09-08T16:07:25,495         |   ^~
2023-09-08T16:07:25,496   ./base/sbml/Parameter.cpp: In member function ‘virtual int Parameter::setName(const std::string&)’:
2023-09-08T16:07:25,497   ./base/sbml/Parameter.cpp:367:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:25,498     367 |   if (&(name) == NULL)
2023-09-08T16:07:25,498         |   ^~
2023-09-08T16:07:25,499   ./base/sbml/Parameter.cpp: In member function ‘int Parameter::setUnits(const std::string&)’:
2023-09-08T16:07:25,500   ./base/sbml/Parameter.cpp:409:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:25,501     409 |   if (&(units) == NULL)
2023-09-08T16:07:25,501         |   ^~
2023-09-08T16:07:25,510   ./base/sbml/Parameter.cpp: In member function ‘virtual Parameter* ListOfParameters::remove(const std::string&)’:
2023-09-08T16:07:25,510   ./base/sbml/Parameter.cpp:1573:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:25,511    1573 |   if (&(sid) != NULL)
2023-09-08T16:07:25,512         |   ^~
2023-09-08T16:07:33,991   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:07:33,992                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:07:33,992                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:07:33,993                    from ./base/sbml/Priority.cpp:45:
2023-09-08T16:07:33,994   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:33,995      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:07:33,995         |                           ^~~~~~~~~~~~~~
2023-09-08T16:07:33,996   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:07:33,996                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:07:33,997                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:07:33,997                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:07:33,998                    from ./base/sbml/Priority.cpp:33:
2023-09-08T16:07:33,998   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:33,999     117 |     struct unary_function
2023-09-08T16:07:33,999         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:34,290   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T16:07:34,291   ./base/sbml/Priority.cpp:100:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:07:34,291     100 |   if (&orig == NULL)
2023-09-08T16:07:34,292         |             ^
2023-09-08T16:07:34,293   ./base/sbml/Priority.cpp:96:37: note: ‘orig’ declared here
2023-09-08T16:07:34,293      96 | Priority::Priority (const Priority& orig) :
2023-09-08T16:07:34,294         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:07:34,295   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T16:07:34,296   ./base/sbml/Priority.cpp:122:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:07:34,296     122 |   if (&rhs == NULL)
2023-09-08T16:07:34,297         |            ^
2023-09-08T16:07:34,298   ./base/sbml/Priority.cpp:120:47: note: ‘rhs’ declared here
2023-09-08T16:07:34,298     120 | Priority& Priority::operator=(const Priority& rhs)
2023-09-08T16:07:34,299         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:34,315   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’:
2023-09-08T16:07:34,315   ./base/sbml/Priority.cpp:503:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:34,316     503 |   catch (SBMLConstructorException)
2023-09-08T16:07:34,317         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:34,318   ./base/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:34,319   ./base/sbml/Priority.cpp:519:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:34,319     519 |   catch (SBMLConstructorException)
2023-09-08T16:07:34,320         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:34,810   ./base/sbml/Priority.cpp: In copy constructor ‘Priority::Priority(const Priority&)’:
2023-09-08T16:07:34,810   ./base/sbml/Priority.cpp:100:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:34,811     100 |   if (&orig == NULL)
2023-09-08T16:07:34,812         |   ^~
2023-09-08T16:07:34,812   ./base/sbml/Priority.cpp: In member function ‘Priority& Priority::operator=(const Priority&)’:
2023-09-08T16:07:34,813   ./base/sbml/Priority.cpp:122:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:34,814     122 |   if (&rhs == NULL)
2023-09-08T16:07:34,814         |   ^~
2023-09-08T16:07:38,722   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:07:38,723                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:07:38,724                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:07:38,724                    from ./base/sbml/RateRule.cpp:49:
2023-09-08T16:07:38,725   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:38,726      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:07:38,727         |                           ^~~~~~~~~~~~~~
2023-09-08T16:07:38,727   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:07:38,728                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:07:38,728                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:07:38,729                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:07:38,729                    from ./base/sbml/RateRule.cpp:34:
2023-09-08T16:07:38,730   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:38,730     117 |     struct unary_function
2023-09-08T16:07:38,731         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:39,019   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_create(unsigned int, unsigned int)’:
2023-09-08T16:07:39,019   ./base/sbml/RateRule.cpp:154:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:39,020     154 |   catch (SBMLConstructorException)
2023-09-08T16:07:39,020         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:39,021   ./base/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:39,022   ./base/sbml/RateRule.cpp:170:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:39,022     170 |   catch (SBMLConstructorException)
2023-09-08T16:07:39,023         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:42,983   In file included from ./base//sbml/SpeciesReference.h:260,
2023-09-08T16:07:42,983                    from ./base/sbml/Reaction.cpp:40:
2023-09-08T16:07:42,984   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:42,984      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:07:42,985         |                           ^~~~~~~~~~~~~~
2023-09-08T16:07:42,986   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:07:42,987                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:07:42,987                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:07:42,988                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:07:42,989                    from ./base/sbml/Reaction.cpp:33:
2023-09-08T16:07:42,990   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:42,990     117 |     struct unary_function
2023-09-08T16:07:42,991         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:43,429   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T16:07:43,430   ./base/sbml/Reaction.cpp:185:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:07:43,430     185 |   if (&orig == NULL)
2023-09-08T16:07:43,431         |             ^
2023-09-08T16:07:43,432   ./base/sbml/Reaction.cpp:178:37: note: ‘orig’ declared here
2023-09-08T16:07:43,432     178 | Reaction::Reaction (const Reaction& orig) :
2023-09-08T16:07:43,433         |                     ~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:07:43,435   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T16:07:43,435   ./base/sbml/Reaction.cpp:215:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:07:43,436     215 |   if (&rhs == NULL)
2023-09-08T16:07:43,437         |            ^
2023-09-08T16:07:43,438   ./base/sbml/Reaction.cpp:213:47: note: ‘rhs’ declared here
2023-09-08T16:07:43,438     213 | Reaction& Reaction::operator=(const Reaction& rhs)
2023-09-08T16:07:43,439         |                               ~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:43,457   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T16:07:43,457   ./base/sbml/Reaction.cpp:549:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:43,458     549 |   if (&(sid) == NULL)
2023-09-08T16:07:43,458         |              ^
2023-09-08T16:07:43,459   ./base/sbml/Reaction.cpp:538:37: note: ‘sid’ declared here
2023-09-08T16:07:43,459     538 | Reaction::setId (const std::string& sid)
2023-09-08T16:07:43,460         |                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:43,461   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T16:07:43,462   ./base/sbml/Reaction.cpp:574:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:07:43,462     574 |   if (&(name) == NULL)
2023-09-08T16:07:43,463         |               ^
2023-09-08T16:07:43,463   ./base/sbml/Reaction.cpp:569:39: note: ‘name’ declared here
2023-09-08T16:07:43,464     569 | Reaction::setName (const std::string& name)
2023-09-08T16:07:43,464         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:07:43,468   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T16:07:43,468   ./base/sbml/Reaction.cpp:665:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:43,469     665 |   if (&(sid) == NULL)
2023-09-08T16:07:43,470         |              ^
2023-09-08T16:07:43,470   ./base/sbml/Reaction.cpp:663:46: note: ‘sid’ declared here
2023-09-08T16:07:43,471     663 | Reaction::setCompartment (const std::string& sid)
2023-09-08T16:07:43,471         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:43,528   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T16:07:43,528   ./base/sbml/Reaction.cpp:1900:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:43,529    1900 |   if (&(sid) == NULL)
2023-09-08T16:07:43,530         |              ^
2023-09-08T16:07:43,530   ./base/sbml/Reaction.cpp:1896:42: note: ‘sid’ declared here
2023-09-08T16:07:43,531    1896 | ListOfReactions::get (const std::string& sid) const
2023-09-08T16:07:43,532         |                       ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:43,533   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T16:07:43,534   ./base/sbml/Reaction.cpp:1927:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:43,534    1927 |   if (&(sid) != NULL)
2023-09-08T16:07:43,535         |              ^
2023-09-08T16:07:43,536   ./base/sbml/Reaction.cpp:1922:45: note: ‘sid’ declared here
2023-09-08T16:07:43,537    1922 | ListOfReactions::remove (const std::string& sid)
2023-09-08T16:07:43,537         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:43,541   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’:
2023-09-08T16:07:43,542   ./base/sbml/Reaction.cpp:2005:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:43,543    2005 |   catch (SBMLConstructorException)
2023-09-08T16:07:43,543         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:43,544   ./base/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:43,545   ./base/sbml/Reaction.cpp:2021:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:43,546    2021 |   catch (SBMLConstructorException)
2023-09-08T16:07:43,546         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:44,173   ./base/sbml/Reaction.cpp: In member function ‘Reaction& Reaction::operator=(const Reaction&)’:
2023-09-08T16:07:44,173   ./base/sbml/Reaction.cpp:215:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:44,174     215 |   if (&rhs == NULL)
2023-09-08T16:07:44,174         |   ^~
2023-09-08T16:07:44,179   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setId(const std::string&)’:
2023-09-08T16:07:44,180   ./base/sbml/Reaction.cpp:549:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:44,180     549 |   if (&(sid) == NULL)
2023-09-08T16:07:44,181         |   ^~
2023-09-08T16:07:44,181   ./base/sbml/Reaction.cpp: In member function ‘virtual int Reaction::setName(const std::string&)’:
2023-09-08T16:07:44,182   ./base/sbml/Reaction.cpp:574:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:44,182     574 |   if (&(name) == NULL)
2023-09-08T16:07:44,183         |   ^~
2023-09-08T16:07:44,183   ./base/sbml/Reaction.cpp: In member function ‘int Reaction::setCompartment(const std::string&)’:
2023-09-08T16:07:44,184   ./base/sbml/Reaction.cpp:665:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:44,184     665 |   if (&(sid) == NULL)
2023-09-08T16:07:44,185         |   ^~
2023-09-08T16:07:44,186   ./base/sbml/Reaction.cpp: In member function ‘virtual const Reaction* ListOfReactions::get(const std::string&) const’:
2023-09-08T16:07:44,186   ./base/sbml/Reaction.cpp:1900:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:44,187    1900 |   if (&(sid) == NULL)
2023-09-08T16:07:44,187         |   ^~
2023-09-08T16:07:44,191   ./base/sbml/Reaction.cpp: In member function ‘virtual Reaction* ListOfReactions::remove(const std::string&)’:
2023-09-08T16:07:44,192   ./base/sbml/Reaction.cpp:1927:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:44,193    1927 |   if (&(sid) != NULL)
2023-09-08T16:07:44,194         |   ^~
2023-09-08T16:07:44,197   ./base/sbml/Reaction.cpp: In copy constructor ‘Reaction::Reaction(const Reaction&)’:
2023-09-08T16:07:44,198   ./base/sbml/Reaction.cpp:185:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:44,198     185 |   if (&orig == NULL)
2023-09-08T16:07:44,199         |   ^~
2023-09-08T16:07:51,892   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:07:51,892                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:07:51,893                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:07:51,894                    from ./base/sbml/Rule.cpp:49:
2023-09-08T16:07:51,895   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:51,895      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:07:51,896         |                           ^~~~~~~~~~~~~~
2023-09-08T16:07:51,896   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:07:51,897                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:07:51,898                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:07:51,898                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:07:51,899                    from ./base/sbml/Rule.cpp:34:
2023-09-08T16:07:51,899   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:51,900     117 |     struct unary_function
2023-09-08T16:07:51,901         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:52,193   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T16:07:52,193   ./base/sbml/Rule.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:07:52,194     110 |   if (&orig == NULL)
2023-09-08T16:07:52,195         |             ^
2023-09-08T16:07:52,196   ./base/sbml/Rule.cpp:106:25: note: ‘orig’ declared here
2023-09-08T16:07:52,196     106 | Rule::Rule (const Rule& orig) :
2023-09-08T16:07:52,197         |             ~~~~~~~~~~~~^~~~
2023-09-08T16:07:52,199   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T16:07:52,199   ./base/sbml/Rule.cpp:137:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:07:52,200     137 |   if (&rhs == NULL)
2023-09-08T16:07:52,200         |            ^
2023-09-08T16:07:52,201   ./base/sbml/Rule.cpp:135:35: note: ‘rhs’ declared here
2023-09-08T16:07:52,201     135 | Rule& Rule::operator=(const Rule& rhs)
2023-09-08T16:07:52,202         |                       ~~~~~~~~~~~~^~~
2023-09-08T16:07:52,211   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T16:07:52,211   ./base/sbml/Rule.cpp:326:18: warning: the compiler can assume that the address of ‘formula’ will never be NULL [-Waddress]
2023-09-08T16:07:52,212     326 |   if (&(formula) == NULL)
2023-09-08T16:07:52,212         |                  ^
2023-09-08T16:07:52,213   ./base/sbml/Rule.cpp:324:38: note: ‘formula’ declared here
2023-09-08T16:07:52,214     324 | Rule::setFormula (const std::string& formula)
2023-09-08T16:07:52,214         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:07:52,218   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T16:07:52,218   ./base/sbml/Rule.cpp:400:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:52,219     400 |   if (&(sid) == NULL)
2023-09-08T16:07:52,219         |              ^
2023-09-08T16:07:52,220   ./base/sbml/Rule.cpp:398:39: note: ‘sid’ declared here
2023-09-08T16:07:52,221     398 | Rule::setVariable (const std::string& sid)
2023-09-08T16:07:52,222         |                    ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:52,222   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T16:07:52,223   ./base/sbml/Rule.cpp:428:16: warning: the compiler can assume that the address of ‘sname’ will never be NULL [-Waddress]
2023-09-08T16:07:52,224     428 |   if (&(sname) == NULL)
2023-09-08T16:07:52,224         |                ^
2023-09-08T16:07:52,225   ./base/sbml/Rule.cpp:425:36: note: ‘sname’ declared here
2023-09-08T16:07:52,226     425 | Rule::setUnits (const std::string& sname)
2023-09-08T16:07:52,227         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:07:52,281   ./base/sbml/Rule.cpp: At global scope:
2023-09-08T16:07:52,282   ./base/sbml/Rule.cpp:1417:26: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:07:52,282    1417 | struct IdEqRule : public unary_function<SBase*, bool>
2023-09-08T16:07:52,283         |                          ^~~~~~~~~~~~~~
2023-09-08T16:07:52,284   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:07:52,284     117 |     struct unary_function
2023-09-08T16:07:52,285         |            ^~~~~~~~~~~~~~
2023-09-08T16:07:52,288   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T16:07:52,289   ./base/sbml/Rule.cpp:1442:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:52,289    1442 |   if (&(sid) == NULL)
2023-09-08T16:07:52,290         |              ^
2023-09-08T16:07:52,291   ./base/sbml/Rule.cpp:1438:38: note: ‘sid’ declared here
2023-09-08T16:07:52,291    1438 | ListOfRules::get (const std::string& sid) const
2023-09-08T16:07:52,292         |                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:52,296   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T16:07:52,297   ./base/sbml/Rule.cpp:1483:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:07:52,298    1483 |   if (&(sid) != NULL)
2023-09-08T16:07:52,298         |              ^
2023-09-08T16:07:52,299   ./base/sbml/Rule.cpp:1478:41: note: ‘sid’ declared here
2023-09-08T16:07:52,299    1478 | ListOfRules::remove (const std::string& sid)
2023-09-08T16:07:52,300         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:07:52,317   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’:
2023-09-08T16:07:52,318   ./base/sbml/Rule.cpp:1672:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:52,318    1672 |   catch (SBMLConstructorException)
2023-09-08T16:07:52,319         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:52,320   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:52,320   ./base/sbml/Rule.cpp:1688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:52,321    1688 |   catch (SBMLConstructorException)
2023-09-08T16:07:52,321         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:52,322   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’:
2023-09-08T16:07:52,323   ./base/sbml/Rule.cpp:1704:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:52,323    1704 |   catch (SBMLConstructorException)
2023-09-08T16:07:52,324         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:52,325   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:52,326   ./base/sbml/Rule.cpp:1720:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:52,326    1720 |   catch (SBMLConstructorException)
2023-09-08T16:07:52,327         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:52,328   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’:
2023-09-08T16:07:52,328   ./base/sbml/Rule.cpp:1736:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:52,329    1736 |   catch (SBMLConstructorException)
2023-09-08T16:07:52,330         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:52,331   ./base/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:07:52,331   ./base/sbml/Rule.cpp:1752:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:07:52,332    1752 |   catch (SBMLConstructorException)
2023-09-08T16:07:52,333         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:07:52,930   ./base/sbml/Rule.cpp: In member function ‘int Rule::setFormula(const std::string&)’:
2023-09-08T16:07:52,931   ./base/sbml/Rule.cpp:326:3: warning: ‘nonnull’ argument ‘formula’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:52,932     326 |   if (&(formula) == NULL)
2023-09-08T16:07:52,932         |   ^~
2023-09-08T16:07:52,940   ./base/sbml/Rule.cpp: In member function ‘virtual const Rule* ListOfRules::get(const std::string&) const’:
2023-09-08T16:07:52,941   ./base/sbml/Rule.cpp:1442:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:52,941    1442 |   if (&(sid) == NULL)
2023-09-08T16:07:52,942         |   ^~
2023-09-08T16:07:52,947   ./base/sbml/Rule.cpp: In copy constructor ‘Rule::Rule(const Rule&)’:
2023-09-08T16:07:52,948   ./base/sbml/Rule.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:52,948     110 |   if (&orig == NULL)
2023-09-08T16:07:52,949         |   ^~
2023-09-08T16:07:52,950   ./base/sbml/Rule.cpp: In member function ‘Rule& Rule::operator=(const Rule&)’:
2023-09-08T16:07:52,951   ./base/sbml/Rule.cpp:137:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:52,952     137 |   if (&rhs == NULL)
2023-09-08T16:07:52,952         |   ^~
2023-09-08T16:07:52,954   ./base/sbml/Rule.cpp: In member function ‘int Rule::setVariable(const std::string&)’:
2023-09-08T16:07:52,954   ./base/sbml/Rule.cpp:400:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:52,955     400 |   if (&(sid) == NULL)
2023-09-08T16:07:52,955         |   ^~
2023-09-08T16:07:52,956   ./base/sbml/Rule.cpp: In member function ‘int Rule::setUnits(const std::string&)’:
2023-09-08T16:07:52,957   ./base/sbml/Rule.cpp:428:3: warning: ‘nonnull’ argument ‘sname’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:52,957     428 |   if (&(sname) == NULL)
2023-09-08T16:07:52,957         |   ^~
2023-09-08T16:07:52,969   ./base/sbml/Rule.cpp: In member function ‘virtual Rule* ListOfRules::remove(const std::string&)’:
2023-09-08T16:07:52,970   ./base/sbml/Rule.cpp:1483:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:07:52,970    1483 |   if (&(sid) != NULL)
2023-09-08T16:07:52,971         |   ^~
2023-09-08T16:08:03,378   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:03,379                    from ./base//sbml/Model.h:446,
2023-09-08T16:08:03,379                    from ./base/sbml/SBMLConvert.cpp:37:
2023-09-08T16:08:03,380   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:03,380      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:03,381         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:03,382   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:03,382                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:08:03,383                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:08:03,384                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T16:08:03,385                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T16:08:03,385                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T16:08:03,386                    from ./base/sbml/SBMLConvert.cpp:34:
2023-09-08T16:08:03,387   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:03,387     117 |     struct unary_function
2023-09-08T16:08:03,388         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:11,605   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:11,606                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:08:11,606                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:08:11,607                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:08:11,608                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T16:08:11,608                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2023-09-08T16:08:11,609                    from ./base/sbml/SBMLDocument.cpp:44:
2023-09-08T16:08:11,610   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:11,611      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:11,611         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:11,612   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:11,613                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:08:11,614                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:08:11,614                    from /usr/include/c++/12/ios:42,
2023-09-08T16:08:11,615                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:08:11,616                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:08:11,617                    from ./base/sbml/SBMLDocument.cpp:35:
2023-09-08T16:08:11,618   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:11,618     117 |     struct unary_function
2023-09-08T16:08:11,619         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:12,035   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T16:08:12,036   ./base/sbml/SBMLDocument.cpp:261:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:08:12,036     261 |   if (&orig == NULL)
2023-09-08T16:08:12,037         |             ^
2023-09-08T16:08:12,037   ./base/sbml/SBMLDocument.cpp:256:49: note: ‘orig’ declared here
2023-09-08T16:08:12,038     256 | SBMLDocument::SBMLDocument (const SBMLDocument& orig) :
2023-09-08T16:08:12,038         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:08:12,039   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T16:08:12,040   ./base/sbml/SBMLDocument.cpp:302:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:08:12,040     302 |   if (&rhs == NULL)
2023-09-08T16:08:12,041         |            ^
2023-09-08T16:08:12,041   ./base/sbml/SBMLDocument.cpp:300:59: note: ‘rhs’ declared here
2023-09-08T16:08:12,042     300 | SBMLDocument& SBMLDocument::operator=(const SBMLDocument& rhs)
2023-09-08T16:08:12,042         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:08:12,190   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’:
2023-09-08T16:08:12,191   ./base/sbml/SBMLDocument.cpp:1868:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:08:12,191    1868 |   catch (SBMLConstructorException)
2023-09-08T16:08:12,192         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:08:12,193   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’:
2023-09-08T16:08:12,194   ./base/sbml/SBMLDocument.cpp:1884:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:08:12,194    1884 |   catch (SBMLConstructorException)
2023-09-08T16:08:12,195         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:08:12,196   ./base/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’:
2023-09-08T16:08:12,197   ./base/sbml/SBMLDocument.cpp:1900:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:08:12,198    1900 |   catch (SBMLConstructorException)
2023-09-08T16:08:12,198         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:08:12,995   ./base/sbml/SBMLDocument.cpp: In member function ‘SBMLDocument& SBMLDocument::operator=(const SBMLDocument&)’:
2023-09-08T16:08:12,996   ./base/sbml/SBMLDocument.cpp:302:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:08:12,997     302 |   if (&rhs == NULL)
2023-09-08T16:08:12,998         |   ^~
2023-09-08T16:08:13,027   ./base/sbml/SBMLDocument.cpp: In copy constructor ‘SBMLDocument::SBMLDocument(const SBMLDocument&)’:
2023-09-08T16:08:13,027   ./base/sbml/SBMLDocument.cpp:261:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:08:13,028     261 |   if (&orig == NULL)
2023-09-08T16:08:13,029         |   ^~
2023-09-08T16:08:22,054   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:22,054                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:08:22,055                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:08:22,056                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:08:22,056                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:08:22,057                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T16:08:22,058                    from ./base/sbml/SBMLError.cpp:41:
2023-09-08T16:08:22,058   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:22,059      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:22,060         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:22,060   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:22,061                    from ./base/sbml/SBMLError.cpp:33:
2023-09-08T16:08:22,061   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:22,062     117 |     struct unary_function
2023-09-08T16:08:22,062         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:26,819   ./base/sbml/SBMLErrorLog.cpp:86:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:26,820      86 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T16:08:26,820         |                        ^~~~~~~~~~~~~~
2023-09-08T16:08:26,821   In file included from /usr/include/c++/12/functional:49,
2023-09-08T16:08:26,822                    from ./base/sbml/SBMLErrorLog.cpp:34:
2023-09-08T16:08:26,822   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:26,823     117 |     struct unary_function
2023-09-08T16:08:26,823         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:30,650   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:30,651                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:08:30,652                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:08:30,652                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:08:30,653                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:08:30,654                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T16:08:30,655                    from ./base/sbml/SBMLNamespaces.cpp:35:
2023-09-08T16:08:30,655   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:30,656      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:30,657         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:30,658   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:30,658                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:08:30,659                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:08:30,660                    from ./base/sbml/SBMLNamespaces.cpp:34:
2023-09-08T16:08:30,660   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:30,661     117 |     struct unary_function
2023-09-08T16:08:30,662         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:31,015   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T16:08:31,016   ./base/sbml/SBMLNamespaces.cpp:175:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:08:31,016     175 |   if (&orig == NULL)
2023-09-08T16:08:31,017         |             ^
2023-09-08T16:08:31,018   ./base/sbml/SBMLNamespaces.cpp:173:54: note: ‘orig’ declared here
2023-09-08T16:08:31,019     173 | SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces& orig)
2023-09-08T16:08:31,019         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:08:31,021   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T16:08:31,022   ./base/sbml/SBMLNamespaces.cpp:225:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:08:31,023     225 |   if (&rhs == NULL)
2023-09-08T16:08:31,024         |            ^
2023-09-08T16:08:31,024   ./base/sbml/SBMLNamespaces.cpp:223:49: note: ‘rhs’ declared here
2023-09-08T16:08:31,025     223 | SBMLNamespaces::operator=(const SBMLNamespaces& rhs)
2023-09-08T16:08:31,026         |                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:08:31,589   ./base/sbml/SBMLNamespaces.cpp: In copy constructor ‘SBMLNamespaces::SBMLNamespaces(const SBMLNamespaces&)’:
2023-09-08T16:08:31,589   ./base/sbml/SBMLNamespaces.cpp:175:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:08:31,590     175 |   if (&orig == NULL)
2023-09-08T16:08:31,590         |   ^~
2023-09-08T16:08:31,591   ./base/sbml/SBMLNamespaces.cpp: In member function ‘SBMLNamespaces& SBMLNamespaces::operator=(const SBMLNamespaces&)’:
2023-09-08T16:08:31,592   ./base/sbml/SBMLNamespaces.cpp:225:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:08:31,592     225 |   if (&rhs == NULL)
2023-09-08T16:08:31,593         |   ^~
2023-09-08T16:08:36,629   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:36,630                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:08:36,630                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:08:36,631                    from ./base/sbml/SBMLReader.cpp:39:
2023-09-08T16:08:36,631   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:36,632      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:36,632         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:36,633   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:36,634                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:08:36,634                    from ./base/sbml/SBMLReader.cpp:33:
2023-09-08T16:08:36,635   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:36,636     117 |     struct unary_function
2023-09-08T16:08:36,636         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:36,926   ./base/sbml/SBMLReader.cpp: In member function ‘SBMLDocument* SBMLReader::readSBMLFromString(const std::string&)’:
2023-09-08T16:08:36,926   ./base/sbml/SBMLReader.cpp:139:12: warning: the compiler can assume that the address of ‘xml’ will never be NULL [-Waddress]
2023-09-08T16:08:36,927     139 |   if (&xml == NULL) return NULL;
2023-09-08T16:08:36,928         |            ^
2023-09-08T16:08:36,928   ./base/sbml/SBMLReader.cpp:137:52: note: ‘xml’ declared here
2023-09-08T16:08:36,929     137 | SBMLReader::readSBMLFromString (const std::string& xml)
2023-09-08T16:08:36,930         |                                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:08:37,441   ./base/sbml/SBMLReader.cpp:139:3: warning: ‘nonnull’ argument ‘xml’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:08:37,441     139 |   if (&xml == NULL) return NULL;
2023-09-08T16:08:37,442         |   ^~
2023-09-08T16:08:41,333   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:41,333                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:08:41,334                    from ./base/sbml/SBMLTransforms.cpp:33:
2023-09-08T16:08:41,335   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:41,335      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:41,336         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:41,337   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:41,338                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:08:41,338                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:08:41,339                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:08:41,340                    from ./base//sbml/SBase.h:145,
2023-09-08T16:08:41,340                    from ./base//sbml/SBMLTransforms.h:45:
2023-09-08T16:08:41,341   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:41,341     117 |     struct unary_function
2023-09-08T16:08:41,342         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:50,202   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:50,202                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:08:50,202                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:08:50,203                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:08:50,203                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:08:50,204                    from ./base/sbml/SBMLTypeCodes.cpp:35:
2023-09-08T16:08:50,204   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:50,205      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:50,205         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:50,206   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:50,206                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:08:50,207                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:08:50,207                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:08:50,208   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:50,208     117 |     struct unary_function
2023-09-08T16:08:50,209         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:54,331   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:54,332                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:08:54,333                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:08:54,333                    from ./base/sbml/SBMLVisitor.cpp:34:
2023-09-08T16:08:54,334   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:54,334      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:54,335         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:54,336   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:54,336                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:08:54,337                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:08:54,338                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:08:54,338   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:54,339     117 |     struct unary_function
2023-09-08T16:08:54,340         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:58,375   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:08:58,376                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:08:58,376                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:08:58,377                    from ./base/sbml/SBMLWriter.cpp:42:
2023-09-08T16:08:58,378   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:08:58,378      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:08:58,379         |                           ^~~~~~~~~~~~~~
2023-09-08T16:08:58,380   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:08:58,381                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:08:58,381                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:08:58,382                    from /usr/include/c++/12/ios:42,
2023-09-08T16:08:58,383                    from ./base/sbml/SBMLWriter.cpp:33:
2023-09-08T16:08:58,384   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:08:58,384     117 |     struct unary_function
2023-09-08T16:08:58,385         |            ^~~~~~~~~~~~~~
2023-09-08T16:08:58,670   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T16:08:58,670   ./base/sbml/SBMLWriter.cpp:85:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:08:58,671      85 |   if (&(name) == NULL)
2023-09-08T16:08:58,671         |               ^
2023-09-08T16:08:58,672   ./base/sbml/SBMLWriter.cpp:83:48: note: ‘name’ declared here
2023-09-08T16:08:58,672      83 | SBMLWriter::setProgramName (const std::string& name)
2023-09-08T16:08:58,673         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:08:58,674   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T16:08:58,674   ./base/sbml/SBMLWriter.cpp:109:18: warning: the compiler can assume that the address of ‘version’ will never be NULL [-Waddress]
2023-09-08T16:08:58,675     109 |   if (&(version) == NULL)
2023-09-08T16:08:58,675         |                  ^
2023-09-08T16:08:58,676   ./base/sbml/SBMLWriter.cpp:107:51: note: ‘version’ declared here
2023-09-08T16:08:58,676     107 | SBMLWriter::setProgramVersion (const std::string& version)
2023-09-08T16:08:58,677         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:08:59,234   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramName(const std::string&)’:
2023-09-08T16:08:59,235   ./base/sbml/SBMLWriter.cpp:85:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:08:59,236      85 |   if (&(name) == NULL)
2023-09-08T16:08:59,236         |   ^~
2023-09-08T16:08:59,237   ./base/sbml/SBMLWriter.cpp: In member function ‘int SBMLWriter::setProgramVersion(const std::string&)’:
2023-09-08T16:08:59,238   ./base/sbml/SBMLWriter.cpp:109:3: warning: ‘nonnull’ argument ‘version’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:08:59,238     109 |   if (&(version) == NULL)
2023-09-08T16:08:59,239         |   ^~
2023-09-08T16:09:02,832   ./base/sbml/SBO.cpp:189:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:02,832     189 | struct GetSecond : public unary_function<const pair<const int, int>, int>
2023-09-08T16:09:02,833         |                           ^~~~~~~~~~~~~~
2023-09-08T16:09:02,834   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:09:02,834                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:09:02,835                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:09:02,836                    from /usr/include/c++/12/iomanip:40,
2023-09-08T16:09:02,836                    from ./base/sbml/SBO.cpp:33:
2023-09-08T16:09:02,837   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:02,837     117 |     struct unary_function
2023-09-08T16:09:02,838         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:11,185   In file included from ./base//sbml/Parameter.h:169,
2023-09-08T16:09:11,186                    from ./base//sbml/KineticLaw.h:169,
2023-09-08T16:09:11,186                    from ./base/sbml/SBase.cpp:46:
2023-09-08T16:09:11,187   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:11,188      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:09:11,188         |                           ^~~~~~~~~~~~~~
2023-09-08T16:09:11,189   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:09:11,190                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:09:11,191                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:09:11,192                    from /usr/include/c++/12/ios:42,
2023-09-08T16:09:11,192                    from /usr/include/c++/12/istream:38,
2023-09-08T16:09:11,193                    from /usr/include/c++/12/sstream:38,
2023-09-08T16:09:11,193                    from ./base/sbml/SBase.cpp:33:
2023-09-08T16:09:11,194   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:11,195     117 |     struct unary_function
2023-09-08T16:09:11,195         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:11,758   ./base/sbml/SBase.cpp:77:36: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:11,759      77 | struct DeletePluginEntity : public unary_function<SBasePlugin*, void>
2023-09-08T16:09:11,759         |                                    ^~~~~~~~~~~~~~
2023-09-08T16:09:11,760   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:11,761     117 |     struct unary_function
2023-09-08T16:09:11,761         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:11,762   ./base/sbml/SBase.cpp:86:35: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:11,763      86 | struct ClonePluginEntity : public unary_function<SBasePlugin*, SBasePlugin*>
2023-09-08T16:09:11,763         |                                   ^~~~~~~~~~~~~~
2023-09-08T16:09:11,764   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:11,764     117 |     struct unary_function
2023-09-08T16:09:11,765         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:11,787   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T16:09:11,788   ./base/sbml/SBase.cpp:380:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:09:11,789     380 |   if (&orig == NULL)
2023-09-08T16:09:11,789         |             ^
2023-09-08T16:09:11,790   ./base/sbml/SBase.cpp:378:27: note: ‘orig’ declared here
2023-09-08T16:09:11,791     378 | SBase::SBase(const SBase& orig)
2023-09-08T16:09:11,792         |              ~~~~~~~~~~~~~^~~~
2023-09-08T16:09:11,799   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T16:09:11,800   ./base/sbml/SBase.cpp:492:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:09:11,801     492 |   if (&rhs == NULL)
2023-09-08T16:09:11,802         |            ^
2023-09-08T16:09:11,802   ./base/sbml/SBase.cpp:490:38: note: ‘rhs’ declared here
2023-09-08T16:09:11,803     490 | SBase& SBase::operator=(const SBase& rhs)
2023-09-08T16:09:11,804         |                         ~~~~~~~~~~~~~^~~
2023-09-08T16:09:11,823   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T16:09:11,824   ./base/sbml/SBase.cpp:1161:17: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T16:09:11,825    1161 |   if (&(metaid) == NULL)
2023-09-08T16:09:11,825         |                 ^
2023-09-08T16:09:11,826   ./base/sbml/SBase.cpp:1159:38: note: ‘metaid’ declared here
2023-09-08T16:09:11,827    1159 | SBase::setMetaId (const std::string& metaid)
2023-09-08T16:09:11,827         |                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:09:11,832   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T16:09:11,833   ./base/sbml/SBase.cpp:1346:21: warning: the compiler can assume that the address of ‘annotation’ will never be NULL [-Waddress]
2023-09-08T16:09:11,834    1346 |   if (&(annotation) == NULL)
2023-09-08T16:09:11,834         |                     ^
2023-09-08T16:09:11,835   ./base/sbml/SBase.cpp:1344:42: note: ‘annotation’ declared here
2023-09-08T16:09:11,836    1344 | SBase::setAnnotation (const std::string& annotation)
2023-09-08T16:09:11,837         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T16:09:11,851   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T16:09:11,852   ./base/sbml/SBase.cpp:1716:16: warning: the compiler can assume that the address of ‘notes’ will never be NULL [-Waddress]
2023-09-08T16:09:11,852    1716 |   if (&(notes) == NULL)
2023-09-08T16:09:11,853         |                ^
2023-09-08T16:09:11,854   ./base/sbml/SBase.cpp:1713:36: note: ‘notes’ declared here
2023-09-08T16:09:11,854    1713 | SBase::setNotes(const std::string& notes, bool addXHTMLMarkup)
2023-09-08T16:09:11,855         |                 ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:09:11,888   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T16:09:11,889   ./base/sbml/SBase.cpp:2366:16: warning: the compiler can assume that the address of ‘sboid’ will never be NULL [-Waddress]
2023-09-08T16:09:11,890    2366 |   if (&(sboid) == NULL)
2023-09-08T16:09:11,890         |                ^
2023-09-08T16:09:11,891   ./base/sbml/SBase.cpp:2364:39: note: ‘sboid’ declared here
2023-09-08T16:09:11,892    2364 | SBase::setSBOTerm (const std::string &sboid)
2023-09-08T16:09:11,892         |                    ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:09:11,951   ./base/sbml/SBase.cpp: In member function ‘bool SBase::hasValidLevelVersionNamespaceCombination(int, XMLNamespaces*)’:
2023-09-08T16:09:11,952   ./base/sbml/SBase.cpp:3605:16: warning: the compiler can assume that the address of ‘pkgName’ will never be NULL [-Waddress]
2023-09-08T16:09:11,953    3605 |   if (&pkgName == NULL)
2023-09-08T16:09:11,953         |                ^
2023-09-08T16:09:11,954   ./base/sbml/SBase.cpp:3604:22: note: ‘pkgName’ declared here
2023-09-08T16:09:11,955    3604 |   const std::string& pkgName = getPackageName();
2023-09-08T16:09:11,955         |                      ^~~~~~~
2023-09-08T16:09:12,142   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T16:09:12,143   ./base/sbml/SBase.cpp:5925:13: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:09:12,144    5925 |   if (&node == NULL) return;
2023-09-08T16:09:12,144         |             ^
2023-09-08T16:09:12,145   ./base/sbml/SBase.cpp:5923:22: note: ‘node’ declared here
2023-09-08T16:09:12,146    5923 | SBase::read(XMLNode& node, XMLErrorSeverityOverride_t flag /*= LIBSBML_OVERRIDE_DISABLED*/)
2023-09-08T16:09:12,146         |             ~~~~~~~~~^~~~
2023-09-08T16:09:12,942   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setSBOTerm(const std::string&)’:
2023-09-08T16:09:12,943   ./base/sbml/SBase.cpp:2366:3: warning: ‘nonnull’ argument ‘sboid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:12,944    2366 |   if (&(sboid) == NULL)
2023-09-08T16:09:12,944         |   ^~
2023-09-08T16:09:12,951   ./base/sbml/SBase.cpp: In member function ‘virtual int SBase::setAnnotation(const std::string&)’:
2023-09-08T16:09:12,951   ./base/sbml/SBase.cpp:1346:3: warning: ‘nonnull’ argument ‘annotation’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:12,952    1346 |   if (&(annotation) == NULL)
2023-09-08T16:09:12,953         |   ^~
2023-09-08T16:09:12,972   ./base/sbml/SBase.cpp: In member function ‘int SBase::setMetaId(const std::string&)’:
2023-09-08T16:09:12,972   ./base/sbml/SBase.cpp:1161:3: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:12,973    1161 |   if (&(metaid) == NULL)
2023-09-08T16:09:12,974         |   ^~
2023-09-08T16:09:13,023   ./base/sbml/SBase.cpp: In member function ‘SBase& SBase::operator=(const SBase&)’:
2023-09-08T16:09:13,024   ./base/sbml/SBase.cpp:492:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:13,025     492 |   if (&rhs == NULL)
2023-09-08T16:09:13,026         |   ^~
2023-09-08T16:09:13,029   ./base/sbml/SBase.cpp: In copy constructor ‘SBase::SBase(const SBase&)’:
2023-09-08T16:09:13,029   ./base/sbml/SBase.cpp:380:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:13,030     380 |   if (&orig == NULL)
2023-09-08T16:09:13,030         |   ^~
2023-09-08T16:09:13,041   ./base/sbml/SBase.cpp: In member function ‘int SBase::setNotes(const std::string&, bool)’:
2023-09-08T16:09:13,041   ./base/sbml/SBase.cpp:1716:3: warning: ‘nonnull’ argument ‘notes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:13,042    1716 |   if (&(notes) == NULL)
2023-09-08T16:09:13,042         |   ^~
2023-09-08T16:09:13,046   ./base/sbml/SBase.cpp: In member function ‘void SBase::read(XMLNode&, XMLErrorSeverityOverride_t)’:
2023-09-08T16:09:13,047   ./base/sbml/SBase.cpp:5925:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:13,048    5925 |   if (&node == NULL) return;
2023-09-08T16:09:13,048         |   ^~
2023-09-08T16:09:30,334   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:09:30,334                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:09:30,335                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:09:30,335                    from ./base/sbml/SimpleSpeciesReference.cpp:47:
2023-09-08T16:09:30,336   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:30,336      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:09:30,337         |                           ^~~~~~~~~~~~~~
2023-09-08T16:09:30,338   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:09:30,338                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:09:30,339                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:09:30,340                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:09:30,340                    from ./base/sbml/SimpleSpeciesReference.cpp:35:
2023-09-08T16:09:30,341   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:30,342     117 |     struct unary_function
2023-09-08T16:09:30,342         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:30,652   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T16:09:30,653   ./base/sbml/SimpleSpeciesReference.cpp:97:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:09:30,654      97 |   if (&orig == NULL)
2023-09-08T16:09:30,655         |             ^
2023-09-08T16:09:30,655   ./base/sbml/SimpleSpeciesReference.cpp:94:78: note: ‘orig’ declared here
2023-09-08T16:09:30,656      94 | SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference& orig) :
2023-09-08T16:09:30,656         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:09:30,657   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T16:09:30,658   ./base/sbml/SimpleSpeciesReference.cpp:115:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:09:30,658     115 |   if (&rhs == NULL)
2023-09-08T16:09:30,659         |            ^
2023-09-08T16:09:30,660   ./base/sbml/SimpleSpeciesReference.cpp:113:89: note: ‘rhs’ declared here
2023-09-08T16:09:30,661     113 | SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference& rhs)
2023-09-08T16:09:30,661         |                                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:30,662   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T16:09:30,663   ./base/sbml/SimpleSpeciesReference.cpp:215:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:30,664     215 |   if (&(sid) == NULL)
2023-09-08T16:09:30,664         |              ^
2023-09-08T16:09:30,665   ./base/sbml/SimpleSpeciesReference.cpp:213:56: note: ‘sid’ declared here
2023-09-08T16:09:30,665     213 | SimpleSpeciesReference::setSpecies (const std::string& sid)
2023-09-08T16:09:30,666         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:30,667   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T16:09:30,667   ./base/sbml/SimpleSpeciesReference.cpp:237:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:30,668     237 |   if (&(sid) == NULL)
2023-09-08T16:09:30,668         |              ^
2023-09-08T16:09:30,669   ./base/sbml/SimpleSpeciesReference.cpp:235:51: note: ‘sid’ declared here
2023-09-08T16:09:30,670     235 | SimpleSpeciesReference::setId (const std::string& sid)
2023-09-08T16:09:30,670         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:30,671   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T16:09:30,671   ./base/sbml/SimpleSpeciesReference.cpp:301:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:09:30,672     301 |   if (&(name) == NULL)
2023-09-08T16:09:30,672         |               ^
2023-09-08T16:09:30,673   ./base/sbml/SimpleSpeciesReference.cpp:299:53: note: ‘name’ declared here
2023-09-08T16:09:30,674     299 | SimpleSpeciesReference::setName (const std::string& name)
2023-09-08T16:09:30,675         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:09:31,191   ./base/sbml/SimpleSpeciesReference.cpp: In copy constructor ‘SimpleSpeciesReference::SimpleSpeciesReference(const SimpleSpeciesReference&)’:
2023-09-08T16:09:31,192   ./base/sbml/SimpleSpeciesReference.cpp:97:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:31,193      97 |   if (&orig == NULL)
2023-09-08T16:09:31,193         |   ^~
2023-09-08T16:09:31,194   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘SimpleSpeciesReference& SimpleSpeciesReference::operator=(const SimpleSpeciesReference&)’:
2023-09-08T16:09:31,195   ./base/sbml/SimpleSpeciesReference.cpp:115:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:31,196     115 |   if (&rhs == NULL)
2023-09-08T16:09:31,196         |   ^~
2023-09-08T16:09:31,197   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘int SimpleSpeciesReference::setSpecies(const std::string&)’:
2023-09-08T16:09:31,198   ./base/sbml/SimpleSpeciesReference.cpp:215:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:31,198     215 |   if (&(sid) == NULL)
2023-09-08T16:09:31,199         |   ^~
2023-09-08T16:09:31,199   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setId(const std::string&)’:
2023-09-08T16:09:31,200   ./base/sbml/SimpleSpeciesReference.cpp:237:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:31,201     237 |   if (&(sid) == NULL)
2023-09-08T16:09:31,201         |   ^~
2023-09-08T16:09:31,202   ./base/sbml/SimpleSpeciesReference.cpp: In member function ‘virtual int SimpleSpeciesReference::setName(const std::string&)’:
2023-09-08T16:09:31,203   ./base/sbml/SimpleSpeciesReference.cpp:301:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:31,204     301 |   if (&(name) == NULL)
2023-09-08T16:09:31,205         |   ^~
2023-09-08T16:09:35,900   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:09:35,901                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:09:35,901                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:09:35,902                    from ./base/sbml/Species.cpp:42:
2023-09-08T16:09:35,902   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:35,903      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:09:35,904         |                           ^~~~~~~~~~~~~~
2023-09-08T16:09:35,905   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:09:35,905                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:09:35,906                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:09:35,906                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:09:35,907                    from ./base/sbml/Species.cpp:35:
2023-09-08T16:09:35,908   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:35,908     117 |     struct unary_function
2023-09-08T16:09:35,909         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:36,207   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T16:09:36,207   ./base/sbml/Species.cpp:167:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:09:36,208     167 |   if (&orig == NULL)
2023-09-08T16:09:36,208         |             ^
2023-09-08T16:09:36,209   ./base/sbml/Species.cpp:164:33: note: ‘orig’ declared here
2023-09-08T16:09:36,209     164 | Species::Species(const Species& orig) :
2023-09-08T16:09:36,210         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:09:36,211   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T16:09:36,212   ./base/sbml/Species.cpp:204:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:09:36,212     204 |   if (&rhs == NULL)
2023-09-08T16:09:36,213         |            ^
2023-09-08T16:09:36,214   ./base/sbml/Species.cpp:202:44: note: ‘rhs’ declared here
2023-09-08T16:09:36,215     202 | Species& Species::operator=(const Species& rhs)
2023-09-08T16:09:36,215         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,220   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T16:09:36,221   ./base/sbml/Species.cpp:616:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:36,222     616 |   if (&(sid) == NULL)
2023-09-08T16:09:36,223         |              ^
2023-09-08T16:09:36,223   ./base/sbml/Species.cpp:605:36: note: ‘sid’ declared here
2023-09-08T16:09:36,224     605 | Species::setId (const std::string& sid)
2023-09-08T16:09:36,225         |                 ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,225   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T16:09:36,226   ./base/sbml/Species.cpp:641:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:09:36,227     641 |   if (&(name) == NULL)
2023-09-08T16:09:36,227         |               ^
2023-09-08T16:09:36,228   ./base/sbml/Species.cpp:636:38: note: ‘name’ declared here
2023-09-08T16:09:36,229     636 | Species::setName (const std::string& name)
2023-09-08T16:09:36,230         |                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:09:36,230   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T16:09:36,231   ./base/sbml/Species.cpp:671:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:36,232     671 |   if (&(sid) == NULL)
2023-09-08T16:09:36,233         |              ^
2023-09-08T16:09:36,234   ./base/sbml/Species.cpp:669:45: note: ‘sid’ declared here
2023-09-08T16:09:36,234     669 | Species::setSpeciesType (const std::string& sid)
2023-09-08T16:09:36,235         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,236   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T16:09:36,236   ./base/sbml/Species.cpp:698:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:36,237     698 |   if (&(sid) == NULL)
2023-09-08T16:09:36,237         |              ^
2023-09-08T16:09:36,238   ./base/sbml/Species.cpp:696:45: note: ‘sid’ declared here
2023-09-08T16:09:36,238     696 | Species::setCompartment (const std::string& sid)
2023-09-08T16:09:36,239         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,239   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T16:09:36,240   ./base/sbml/Species.cpp:757:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:36,241     757 |   if (&(sid) == NULL)
2023-09-08T16:09:36,241         |              ^
2023-09-08T16:09:36,242   ./base/sbml/Species.cpp:755:48: note: ‘sid’ declared here
2023-09-08T16:09:36,242     755 | Species::setSubstanceUnits (const std::string& sid)
2023-09-08T16:09:36,243         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,243   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T16:09:36,244   ./base/sbml/Species.cpp:779:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:36,244     779 |   if (&(sid) == NULL)
2023-09-08T16:09:36,245         |              ^
2023-09-08T16:09:36,246   ./base/sbml/Species.cpp:777:50: note: ‘sid’ declared here
2023-09-08T16:09:36,246     777 | Species::setSpatialSizeUnits (const std::string& sid)
2023-09-08T16:09:36,247         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,248   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T16:09:36,248   ./base/sbml/Species.cpp:890:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:36,249     890 |   if (&(sid) == NULL)
2023-09-08T16:09:36,250         |              ^
2023-09-08T16:09:36,251   ./base/sbml/Species.cpp:888:50: note: ‘sid’ declared here
2023-09-08T16:09:36,251     888 | Species::setConversionFactor (const std::string& sid)
2023-09-08T16:09:36,252         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,303   ./base/sbml/Species.cpp: At global scope:
2023-09-08T16:09:36,304   ./base/sbml/Species.cpp:1913:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:36,305    1913 | struct IdEqS : public unary_function<SBase*, bool>
2023-09-08T16:09:36,306         |                       ^~~~~~~~~~~~~~
2023-09-08T16:09:36,306   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:36,307     117 |     struct unary_function
2023-09-08T16:09:36,308         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:36,309   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T16:09:36,310   ./base/sbml/Species.cpp:1936:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:36,310    1936 |   if (&(sid) == NULL)
2023-09-08T16:09:36,311         |              ^
2023-09-08T16:09:36,312   ./base/sbml/Species.cpp:1932:40: note: ‘sid’ declared here
2023-09-08T16:09:36,313    1932 | ListOfSpecies::get (const std::string& sid) const
2023-09-08T16:09:36,314         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,315   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T16:09:36,315   ./base/sbml/Species.cpp:1963:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:36,316    1963 |   if (&(sid) != NULL)
2023-09-08T16:09:36,316         |              ^
2023-09-08T16:09:36,317   ./base/sbml/Species.cpp:1958:43: note: ‘sid’ declared here
2023-09-08T16:09:36,317    1958 | ListOfSpecies::remove (const std::string& sid)
2023-09-08T16:09:36,318         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:36,322   ./base/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’:
2023-09-08T16:09:36,323   ./base/sbml/Species.cpp:2041:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:09:36,323    2041 |   catch (SBMLConstructorException)
2023-09-08T16:09:36,324         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:09:36,324   ./base/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:09:36,325   ./base/sbml/Species.cpp:2057:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:09:36,326    2057 |   catch (SBMLConstructorException)
2023-09-08T16:09:36,326         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:09:36,952   ./base/sbml/Species.cpp: In member function ‘virtual const Species* ListOfSpecies::get(const std::string&) const’:
2023-09-08T16:09:36,953   ./base/sbml/Species.cpp:1936:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,953    1936 |   if (&(sid) == NULL)
2023-09-08T16:09:36,954         |   ^~
2023-09-08T16:09:36,956   ./base/sbml/Species.cpp: In copy constructor ‘Species::Species(const Species&)’:
2023-09-08T16:09:36,957   ./base/sbml/Species.cpp:167:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,958     167 |   if (&orig == NULL)
2023-09-08T16:09:36,959         |   ^~
2023-09-08T16:09:36,959   ./base/sbml/Species.cpp: In member function ‘Species& Species::operator=(const Species&)’:
2023-09-08T16:09:36,960   ./base/sbml/Species.cpp:204:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,961     204 |   if (&rhs == NULL)
2023-09-08T16:09:36,961         |   ^~
2023-09-08T16:09:36,962   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setId(const std::string&)’:
2023-09-08T16:09:36,963   ./base/sbml/Species.cpp:616:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,964     616 |   if (&(sid) == NULL)
2023-09-08T16:09:36,964         |   ^~
2023-09-08T16:09:36,965   ./base/sbml/Species.cpp: In member function ‘virtual int Species::setName(const std::string&)’:
2023-09-08T16:09:36,966   ./base/sbml/Species.cpp:641:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,966     641 |   if (&(name) == NULL)
2023-09-08T16:09:36,967         |   ^~
2023-09-08T16:09:36,967   ./base/sbml/Species.cpp: In member function ‘int Species::setSpeciesType(const std::string&)’:
2023-09-08T16:09:36,968   ./base/sbml/Species.cpp:671:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,969     671 |   if (&(sid) == NULL)
2023-09-08T16:09:36,969         |   ^~
2023-09-08T16:09:36,970   ./base/sbml/Species.cpp: In member function ‘int Species::setCompartment(const std::string&)’:
2023-09-08T16:09:36,971   ./base/sbml/Species.cpp:698:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,972     698 |   if (&(sid) == NULL)
2023-09-08T16:09:36,973         |   ^~
2023-09-08T16:09:36,973   ./base/sbml/Species.cpp: In member function ‘int Species::setSubstanceUnits(const std::string&)’:
2023-09-08T16:09:36,974   ./base/sbml/Species.cpp:757:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,975     757 |   if (&(sid) == NULL)
2023-09-08T16:09:36,976         |   ^~
2023-09-08T16:09:36,976   ./base/sbml/Species.cpp: In member function ‘int Species::setSpatialSizeUnits(const std::string&)’:
2023-09-08T16:09:36,977   ./base/sbml/Species.cpp:779:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,977     779 |   if (&(sid) == NULL)
2023-09-08T16:09:36,978         |   ^~
2023-09-08T16:09:36,978   ./base/sbml/Species.cpp: In member function ‘int Species::setConversionFactor(const std::string&)’:
2023-09-08T16:09:36,979   ./base/sbml/Species.cpp:890:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,979     890 |   if (&(sid) == NULL)
2023-09-08T16:09:36,980         |   ^~
2023-09-08T16:09:36,980   ./base/sbml/Species.cpp: In member function ‘virtual Species* ListOfSpecies::remove(const std::string&)’:
2023-09-08T16:09:36,981   ./base/sbml/Species.cpp:1963:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:36,981    1963 |   if (&(sid) != NULL)
2023-09-08T16:09:36,982         |   ^~
2023-09-08T16:09:47,301   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:09:47,301                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:09:47,302                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:09:47,302                    from ./base/sbml/SpeciesReference.cpp:48:
2023-09-08T16:09:47,303   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:47,303      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:09:47,304         |                           ^~~~~~~~~~~~~~
2023-09-08T16:09:47,305   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:09:47,306                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:09:47,306                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:09:47,307                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:09:47,308                    from ./base/sbml/SpeciesReference.cpp:35:
2023-09-08T16:09:47,309   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:47,309     117 |     struct unary_function
2023-09-08T16:09:47,310         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:47,616   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T16:09:47,617   ./base/sbml/SpeciesReference.cpp:129:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:09:47,618     129 |   if (&orig == NULL)
2023-09-08T16:09:47,618         |             ^
2023-09-08T16:09:47,619   ./base/sbml/SpeciesReference.cpp:125:61: note: ‘orig’ declared here
2023-09-08T16:09:47,620     125 | SpeciesReference::SpeciesReference (const SpeciesReference& orig) :
2023-09-08T16:09:47,620         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:09:47,621   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T16:09:47,622   ./base/sbml/SpeciesReference.cpp:157:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:09:47,622     157 |   if (&rhs == NULL)
2023-09-08T16:09:47,623         |            ^
2023-09-08T16:09:47,624   ./base/sbml/SpeciesReference.cpp:155:71: note: ‘rhs’ declared here
2023-09-08T16:09:47,624     155 | SpeciesReference& SpeciesReference::operator=(const SpeciesReference& rhs)
2023-09-08T16:09:47,625         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:47,664   ./base/sbml/SpeciesReference.cpp: At global scope:
2023-09-08T16:09:47,665   ./base/sbml/SpeciesReference.cpp:1209:25: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:47,665    1209 | struct IdEqSSR : public unary_function<SBase*, bool>
2023-09-08T16:09:47,666         |                         ^~~~~~~~~~~~~~
2023-09-08T16:09:47,666   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:47,667     117 |     struct unary_function
2023-09-08T16:09:47,667         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:47,670   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T16:09:47,671   ./base/sbml/SpeciesReference.cpp:1251:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:47,672    1251 |   if (&(sid) == NULL)
2023-09-08T16:09:47,672         |              ^
2023-09-08T16:09:47,673   ./base/sbml/SpeciesReference.cpp:1247:50: note: ‘sid’ declared here
2023-09-08T16:09:47,673    1247 | ListOfSpeciesReferences::get (const std::string& sid) const
2023-09-08T16:09:47,674         |                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:47,676   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T16:09:47,676   ./base/sbml/SpeciesReference.cpp:1279:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:47,677    1279 |   if (&(sid) != NULL)
2023-09-08T16:09:47,678         |              ^
2023-09-08T16:09:47,678   ./base/sbml/SpeciesReference.cpp:1274:53: note: ‘sid’ declared here
2023-09-08T16:09:47,679    1274 | ListOfSpeciesReferences::remove (const std::string& sid)
2023-09-08T16:09:47,680         |                                  ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:47,692   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’:
2023-09-08T16:09:47,692   ./base/sbml/SpeciesReference.cpp:1448:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:09:47,693    1448 |   catch (SBMLConstructorException)
2023-09-08T16:09:47,694         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:09:47,695   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:09:47,696   ./base/sbml/SpeciesReference.cpp:1464:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:09:47,696    1464 |   catch (SBMLConstructorException)
2023-09-08T16:09:47,697         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:09:47,698   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’:
2023-09-08T16:09:47,698   ./base/sbml/SpeciesReference.cpp:1480:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:09:47,699    1480 |   catch (SBMLConstructorException)
2023-09-08T16:09:47,700         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:09:47,700   ./base/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:09:47,701   ./base/sbml/SpeciesReference.cpp:1496:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:09:47,702    1496 |   catch (SBMLConstructorException)
2023-09-08T16:09:47,703         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:09:48,302   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual const SimpleSpeciesReference* ListOfSpeciesReferences::get(const std::string&) const’:
2023-09-08T16:09:48,303   ./base/sbml/SpeciesReference.cpp:1251:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:48,304    1251 |   if (&(sid) == NULL)
2023-09-08T16:09:48,304         |   ^~
2023-09-08T16:09:48,308   ./base/sbml/SpeciesReference.cpp: In copy constructor ‘SpeciesReference::SpeciesReference(const SpeciesReference&)’:
2023-09-08T16:09:48,308   ./base/sbml/SpeciesReference.cpp:129:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:48,309     129 |   if (&orig == NULL)
2023-09-08T16:09:48,309         |   ^~
2023-09-08T16:09:48,310   ./base/sbml/SpeciesReference.cpp: In member function ‘SpeciesReference& SpeciesReference::operator=(const SpeciesReference&)’:
2023-09-08T16:09:48,310   ./base/sbml/SpeciesReference.cpp:157:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:48,311     157 |   if (&rhs == NULL)
2023-09-08T16:09:48,311         |   ^~
2023-09-08T16:09:48,319   ./base/sbml/SpeciesReference.cpp: In member function ‘virtual SimpleSpeciesReference* ListOfSpeciesReferences::remove(const std::string&)’:
2023-09-08T16:09:48,320   ./base/sbml/SpeciesReference.cpp:1279:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:48,320    1279 |   if (&(sid) != NULL)
2023-09-08T16:09:48,321         |   ^~
2023-09-08T16:09:54,353   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:09:54,354                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:09:54,354                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:09:54,355                    from ./base/sbml/SpeciesType.cpp:41:
2023-09-08T16:09:54,355   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:54,356      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:09:54,357         |                           ^~~~~~~~~~~~~~
2023-09-08T16:09:54,358   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:09:54,358                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:09:54,359                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:09:54,360                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:09:54,360                    from ./base/sbml/SpeciesType.cpp:33:
2023-09-08T16:09:54,361   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:54,362     117 |     struct unary_function
2023-09-08T16:09:54,362         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:54,655   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T16:09:54,655   ./base/sbml/SpeciesType.cpp:92:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:09:54,656      92 |   if (&orig == NULL)
2023-09-08T16:09:54,657         |             ^
2023-09-08T16:09:54,658   ./base/sbml/SpeciesType.cpp:89:45: note: ‘orig’ declared here
2023-09-08T16:09:54,658      89 | SpeciesType::SpeciesType(const SpeciesType& orig) :
2023-09-08T16:09:54,659         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:09:54,660   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T16:09:54,660   ./base/sbml/SpeciesType.cpp:109:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:09:54,661     109 |   if (&rhs == NULL)
2023-09-08T16:09:54,662         |            ^
2023-09-08T16:09:54,662   ./base/sbml/SpeciesType.cpp:107:56: note: ‘rhs’ declared here
2023-09-08T16:09:54,663     107 | SpeciesType& SpeciesType::operator=(const SpeciesType& rhs)
2023-09-08T16:09:54,664         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:54,666   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T16:09:54,667   ./base/sbml/SpeciesType.cpp:206:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:54,668     206 |   if (&(sid) == NULL)
2023-09-08T16:09:54,668         |              ^
2023-09-08T16:09:54,669   ./base/sbml/SpeciesType.cpp:195:40: note: ‘sid’ declared here
2023-09-08T16:09:54,669     195 | SpeciesType::setId (const std::string& sid)
2023-09-08T16:09:54,670         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:54,670   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T16:09:54,671   ./base/sbml/SpeciesType.cpp:231:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:09:54,671     231 |   if (&(name) == NULL)
2023-09-08T16:09:54,671         |               ^
2023-09-08T16:09:54,672   ./base/sbml/SpeciesType.cpp:226:42: note: ‘name’ declared here
2023-09-08T16:09:54,672     226 | SpeciesType::setName (const std::string& name)
2023-09-08T16:09:54,673         |                       ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:09:54,685   ./base/sbml/SpeciesType.cpp: At global scope:
2023-09-08T16:09:54,686   ./base/sbml/SpeciesType.cpp:541:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:09:54,687     541 | struct IdEqST : public unary_function<SBase*, bool>
2023-09-08T16:09:54,687         |                        ^~~~~~~~~~~~~~
2023-09-08T16:09:54,688   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:09:54,688     117 |     struct unary_function
2023-09-08T16:09:54,689         |            ^~~~~~~~~~~~~~
2023-09-08T16:09:54,693   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T16:09:54,693   ./base/sbml/SpeciesType.cpp:566:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:54,694     566 |   if (&(sid) == NULL)
2023-09-08T16:09:54,695         |              ^
2023-09-08T16:09:54,696   ./base/sbml/SpeciesType.cpp:562:45: note: ‘sid’ declared here
2023-09-08T16:09:54,696     562 | ListOfSpeciesTypes::get (const std::string& sid) const
2023-09-08T16:09:54,697         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:54,700   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T16:09:54,701   ./base/sbml/SpeciesType.cpp:594:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:09:54,702     594 |   if (&(sid) != NULL)
2023-09-08T16:09:54,703         |              ^
2023-09-08T16:09:54,703   ./base/sbml/SpeciesType.cpp:589:48: note: ‘sid’ declared here
2023-09-08T16:09:54,704     589 | ListOfSpeciesTypes::remove (const std::string& sid)
2023-09-08T16:09:54,704         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:09:54,711   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’:
2023-09-08T16:09:54,711   ./base/sbml/SpeciesType.cpp:673:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:09:54,712     673 |   catch (SBMLConstructorException)
2023-09-08T16:09:54,713         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:09:54,714   ./base/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:09:54,714   ./base/sbml/SpeciesType.cpp:689:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:09:54,715     689 |   catch (SBMLConstructorException)
2023-09-08T16:09:54,716         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:09:55,280   ./base/sbml/SpeciesType.cpp: In member function ‘virtual const SpeciesType* ListOfSpeciesTypes::get(const std::string&) const’:
2023-09-08T16:09:55,281   ./base/sbml/SpeciesType.cpp:566:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:55,281     566 |   if (&(sid) == NULL)
2023-09-08T16:09:55,282         |   ^~
2023-09-08T16:09:55,284   ./base/sbml/SpeciesType.cpp: In copy constructor ‘SpeciesType::SpeciesType(const SpeciesType&)’:
2023-09-08T16:09:55,285   ./base/sbml/SpeciesType.cpp:92:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:55,286      92 |   if (&orig == NULL)
2023-09-08T16:09:55,286         |   ^~
2023-09-08T16:09:55,286   ./base/sbml/SpeciesType.cpp: In member function ‘SpeciesType& SpeciesType::operator=(const SpeciesType&)’:
2023-09-08T16:09:55,287   ./base/sbml/SpeciesType.cpp:109:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:55,287     109 |   if (&rhs == NULL)
2023-09-08T16:09:55,288         |   ^~
2023-09-08T16:09:55,290   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setId(const std::string&)’:
2023-09-08T16:09:55,291   ./base/sbml/SpeciesType.cpp:206:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:55,291     206 |   if (&(sid) == NULL)
2023-09-08T16:09:55,292         |   ^~
2023-09-08T16:09:55,292   ./base/sbml/SpeciesType.cpp: In member function ‘virtual int SpeciesType::setName(const std::string&)’:
2023-09-08T16:09:55,293   ./base/sbml/SpeciesType.cpp:231:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:55,293     231 |   if (&(name) == NULL)
2023-09-08T16:09:55,294         |   ^~
2023-09-08T16:09:55,300   ./base/sbml/SpeciesType.cpp: In member function ‘virtual SpeciesType* ListOfSpeciesTypes::remove(const std::string&)’:
2023-09-08T16:09:55,301   ./base/sbml/SpeciesType.cpp:594:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:09:55,302     594 |   if (&(sid) != NULL)
2023-09-08T16:09:55,302         |   ^~
2023-09-08T16:10:00,417   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:10:00,418                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:10:00,419                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:10:00,420                    from ./base/sbml/StoichiometryMath.cpp:46:
2023-09-08T16:10:00,420   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:10:00,421      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:10:00,422         |                           ^~~~~~~~~~~~~~
2023-09-08T16:10:00,423   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:10:00,423                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:10:00,424                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:10:00,425                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:10:00,425                    from ./base/sbml/StoichiometryMath.cpp:33:
2023-09-08T16:10:00,426   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:10:00,427     117 |     struct unary_function
2023-09-08T16:10:00,427         |            ^~~~~~~~~~~~~~
2023-09-08T16:10:00,713   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T16:10:00,714   ./base/sbml/StoichiometryMath.cpp:98:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:10:00,715      98 |   if (&orig == NULL)
2023-09-08T16:10:00,715         |             ^
2023-09-08T16:10:00,716   ./base/sbml/StoichiometryMath.cpp:94:64: note: ‘orig’ declared here
2023-09-08T16:10:00,717      94 | StoichiometryMath::StoichiometryMath (const StoichiometryMath& orig) :
2023-09-08T16:10:00,718         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:00,719   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T16:10:00,719   ./base/sbml/StoichiometryMath.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:10:00,720     120 |   if (&rhs == NULL)
2023-09-08T16:10:00,721         |            ^
2023-09-08T16:10:00,721   ./base/sbml/StoichiometryMath.cpp:118:74: note: ‘rhs’ declared here
2023-09-08T16:10:00,722     118 | StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath& rhs)
2023-09-08T16:10:00,722         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:10:00,738   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’:
2023-09-08T16:10:00,739   ./base/sbml/StoichiometryMath.cpp:627:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:10:00,739     627 |   catch (SBMLConstructorException)
2023-09-08T16:10:00,740         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:00,741   ./base/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:10:00,741   ./base/sbml/StoichiometryMath.cpp:643:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:10:00,742     643 |   catch (SBMLConstructorException)
2023-09-08T16:10:00,743         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:01,244   ./base/sbml/StoichiometryMath.cpp: In copy constructor ‘StoichiometryMath::StoichiometryMath(const StoichiometryMath&)’:
2023-09-08T16:10:01,244   ./base/sbml/StoichiometryMath.cpp:98:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:01,245      98 |   if (&orig == NULL)
2023-09-08T16:10:01,246         |   ^~
2023-09-08T16:10:01,246   ./base/sbml/StoichiometryMath.cpp: In member function ‘StoichiometryMath& StoichiometryMath::operator=(const StoichiometryMath&)’:
2023-09-08T16:10:01,247   ./base/sbml/StoichiometryMath.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:01,248     120 |   if (&rhs == NULL)
2023-09-08T16:10:01,248         |   ^~
2023-09-08T16:10:09,518   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:10:09,519                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:10:09,519                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:10:09,520                    from ./base/sbml/Trigger.cpp:46:
2023-09-08T16:10:09,521   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:10:09,521      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:10:09,522         |                           ^~~~~~~~~~~~~~
2023-09-08T16:10:09,523   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:10:09,523                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:10:09,524                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:10:09,525                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:10:09,525                    from ./base/sbml/Trigger.cpp:33:
2023-09-08T16:10:09,526   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:10:09,527     117 |     struct unary_function
2023-09-08T16:10:09,527         |            ^~~~~~~~~~~~~~
2023-09-08T16:10:09,811   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T16:10:09,812   ./base/sbml/Trigger.cpp:106:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:10:09,812     106 |   if (&orig == NULL)
2023-09-08T16:10:09,813         |             ^
2023-09-08T16:10:09,814   ./base/sbml/Trigger.cpp:102:34: note: ‘orig’ declared here
2023-09-08T16:10:09,814     102 | Trigger::Trigger (const Trigger& orig) :
2023-09-08T16:10:09,815         |                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:09,815   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T16:10:09,816   ./base/sbml/Trigger.cpp:131:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:10:09,817     131 |   if (&rhs == NULL)
2023-09-08T16:10:09,817         |            ^
2023-09-08T16:10:09,818   ./base/sbml/Trigger.cpp:129:44: note: ‘rhs’ declared here
2023-09-08T16:10:09,818     129 | Trigger& Trigger::operator=(const Trigger& rhs)
2023-09-08T16:10:09,819         |                             ~~~~~~~~~~~~~~~^~~
2023-09-08T16:10:09,840   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’:
2023-09-08T16:10:09,840   ./base/sbml/Trigger.cpp:670:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:10:09,841     670 |   catch (SBMLConstructorException)
2023-09-08T16:10:09,841         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:09,842   ./base/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:10:09,843   ./base/sbml/Trigger.cpp:686:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:10:09,843     686 |   catch (SBMLConstructorException)
2023-09-08T16:10:09,844         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:10,354   ./base/sbml/Trigger.cpp: In copy constructor ‘Trigger::Trigger(const Trigger&)’:
2023-09-08T16:10:10,354   ./base/sbml/Trigger.cpp:106:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:10,355     106 |   if (&orig == NULL)
2023-09-08T16:10:10,356         |   ^~
2023-09-08T16:10:10,357   ./base/sbml/Trigger.cpp: In member function ‘Trigger& Trigger::operator=(const Trigger&)’:
2023-09-08T16:10:10,357   ./base/sbml/Trigger.cpp:131:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:10,358     131 |   if (&rhs == NULL)
2023-09-08T16:10:10,359         |   ^~
2023-09-08T16:10:14,754   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:10:14,755                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:10:14,755                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:10:14,756                    from ./base/sbml/Unit.cpp:41:
2023-09-08T16:10:14,757   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:10:14,757      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:10:14,758         |                           ^~~~~~~~~~~~~~
2023-09-08T16:10:14,759   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:10:14,759                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:10:14,760                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:10:14,761                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:10:14,761                    from ./base/sbml/Unit.cpp:33:
2023-09-08T16:10:14,762   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:10:14,763     117 |     struct unary_function
2023-09-08T16:10:14,763         |            ^~~~~~~~~~~~~~
2023-09-08T16:10:15,050   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T16:10:15,051   ./base/sbml/Unit.cpp:150:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:10:15,051     150 |   if (&orig == NULL)
2023-09-08T16:10:15,052         |             ^
2023-09-08T16:10:15,053   ./base/sbml/Unit.cpp:147:24: note: ‘orig’ declared here
2023-09-08T16:10:15,053     147 | Unit::Unit(const Unit& orig) :
2023-09-08T16:10:15,054         |            ~~~~~~~~~~~~^~~~
2023-09-08T16:10:15,054   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T16:10:15,055   ./base/sbml/Unit.cpp:179:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:10:15,055     179 |   if (&rhs == NULL)
2023-09-08T16:10:15,056         |            ^
2023-09-08T16:10:15,056   ./base/sbml/Unit.cpp:177:35: note: ‘rhs’ declared here
2023-09-08T16:10:15,057     177 | Unit& Unit::operator=(const Unit& rhs)
2023-09-08T16:10:15,058         |                       ~~~~~~~~~~~~^~~
2023-09-08T16:10:15,157   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’:
2023-09-08T16:10:15,157   ./base/sbml/Unit.cpp:2217:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:10:15,158    2217 |   catch (SBMLConstructorException)
2023-09-08T16:10:15,159         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:15,159   ./base/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:10:15,160   ./base/sbml/Unit.cpp:2233:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:10:15,160    2233 |   catch (SBMLConstructorException)
2023-09-08T16:10:15,161         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:15,764   ./base/sbml/Unit.cpp: In copy constructor ‘Unit::Unit(const Unit&)’:
2023-09-08T16:10:15,765   ./base/sbml/Unit.cpp:150:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:15,765     150 |   if (&orig == NULL)
2023-09-08T16:10:15,766         |   ^~
2023-09-08T16:10:15,767   ./base/sbml/Unit.cpp: In member function ‘Unit& Unit::operator=(const Unit&)’:
2023-09-08T16:10:15,768   ./base/sbml/Unit.cpp:179:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:15,768     179 |   if (&rhs == NULL)
2023-09-08T16:10:15,769         |   ^~
2023-09-08T16:10:23,008   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:10:23,008                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:10:23,009                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:10:23,010                    from ./base/sbml/UnitDefinition.cpp:44:
2023-09-08T16:10:23,010   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:10:23,011      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:10:23,012         |                           ^~~~~~~~~~~~~~
2023-09-08T16:10:23,013   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:10:23,013                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:10:23,014                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:10:23,015                    from ./base//sbml/xml/XMLNode.h:149,
2023-09-08T16:10:23,015                    from ./base/sbml/UnitDefinition.cpp:34:
2023-09-08T16:10:23,016   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:10:23,017     117 |     struct unary_function
2023-09-08T16:10:23,017         |            ^~~~~~~~~~~~~~
2023-09-08T16:10:23,308   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T16:10:23,308   ./base/sbml/UnitDefinition.cpp:104:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:10:23,309     104 |   if (&orig == NULL)
2023-09-08T16:10:23,310         |             ^
2023-09-08T16:10:23,311   ./base/sbml/UnitDefinition.cpp:100:54: note: ‘orig’ declared here
2023-09-08T16:10:23,311     100 | UnitDefinition::UnitDefinition(const UnitDefinition& orig) :
2023-09-08T16:10:23,312         |                                ~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:23,313   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T16:10:23,314   ./base/sbml/UnitDefinition.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:10:23,314     123 |   if (&rhs == NULL)
2023-09-08T16:10:23,315         |            ^
2023-09-08T16:10:23,315   ./base/sbml/UnitDefinition.cpp:121:65: note: ‘rhs’ declared here
2023-09-08T16:10:23,316     121 | UnitDefinition& UnitDefinition::operator=(const UnitDefinition& rhs)
2023-09-08T16:10:23,316         |                                           ~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:10:23,320   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T16:10:23,320   ./base/sbml/UnitDefinition.cpp:262:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:10:23,321     262 |   if (&(sid) == NULL)
2023-09-08T16:10:23,322         |              ^
2023-09-08T16:10:23,322   ./base/sbml/UnitDefinition.cpp:251:43: note: ‘sid’ declared here
2023-09-08T16:10:23,323     251 | UnitDefinition::setId (const std::string& sid)
2023-09-08T16:10:23,323         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:10:23,324   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T16:10:23,324   ./base/sbml/UnitDefinition.cpp:287:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:10:23,325     287 |   if (&(name) == NULL)
2023-09-08T16:10:23,326         |               ^
2023-09-08T16:10:23,327   ./base/sbml/UnitDefinition.cpp:282:45: note: ‘name’ declared here
2023-09-08T16:10:23,327     282 | UnitDefinition::setName (const std::string& name)
2023-09-08T16:10:23,328         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:23,388   ./base/sbml/UnitDefinition.cpp: At global scope:
2023-09-08T16:10:23,389   ./base/sbml/UnitDefinition.cpp:1777:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:10:23,389    1777 | struct IdEqUD : public unary_function<SBase*, bool>
2023-09-08T16:10:23,390         |                        ^~~~~~~~~~~~~~
2023-09-08T16:10:23,391   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:10:23,392     117 |     struct unary_function
2023-09-08T16:10:23,392         |            ^~~~~~~~~~~~~~
2023-09-08T16:10:23,393   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T16:10:23,394   ./base/sbml/UnitDefinition.cpp:1802:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:10:23,394    1802 |   if (&(sid) == NULL)
2023-09-08T16:10:23,395         |              ^
2023-09-08T16:10:23,396   ./base/sbml/UnitDefinition.cpp:1798:48: note: ‘sid’ declared here
2023-09-08T16:10:23,396    1798 | ListOfUnitDefinitions::get (const std::string& sid) const
2023-09-08T16:10:23,397         |                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:10:23,399   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T16:10:23,400   ./base/sbml/UnitDefinition.cpp:1844:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:10:23,400    1844 |   if (&(sid) != NULL)
2023-09-08T16:10:23,401         |              ^
2023-09-08T16:10:23,402   ./base/sbml/UnitDefinition.cpp:1839:51: note: ‘sid’ declared here
2023-09-08T16:10:23,403    1839 | ListOfUnitDefinitions::remove (const std::string& sid)
2023-09-08T16:10:23,404         |                                ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:10:23,407   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’:
2023-09-08T16:10:23,408   ./base/sbml/UnitDefinition.cpp:1922:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:10:23,408    1922 |   catch (SBMLConstructorException)
2023-09-08T16:10:23,409         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:23,409   ./base/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’:
2023-09-08T16:10:23,410   ./base/sbml/UnitDefinition.cpp:1938:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=]
2023-09-08T16:10:23,410    1938 |   catch (SBMLConstructorException)
2023-09-08T16:10:23,411         |          ^~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:24,014   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual const UnitDefinition* ListOfUnitDefinitions::get(const std::string&) const’:
2023-09-08T16:10:24,015   ./base/sbml/UnitDefinition.cpp:1802:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:24,015    1802 |   if (&(sid) == NULL)
2023-09-08T16:10:24,016         |   ^~
2023-09-08T16:10:24,017   ./base/sbml/UnitDefinition.cpp: In member function ‘UnitDefinition& UnitDefinition::operator=(const UnitDefinition&)’:
2023-09-08T16:10:24,018   ./base/sbml/UnitDefinition.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:24,018     123 |   if (&rhs == NULL)
2023-09-08T16:10:24,019         |   ^~
2023-09-08T16:10:24,020   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setId(const std::string&)’:
2023-09-08T16:10:24,021   ./base/sbml/UnitDefinition.cpp:262:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:24,022     262 |   if (&(sid) == NULL)
2023-09-08T16:10:24,022         |   ^~
2023-09-08T16:10:24,023   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual int UnitDefinition::setName(const std::string&)’:
2023-09-08T16:10:24,024   ./base/sbml/UnitDefinition.cpp:287:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:24,024     287 |   if (&(name) == NULL)
2023-09-08T16:10:24,025         |   ^~
2023-09-08T16:10:24,030   ./base/sbml/UnitDefinition.cpp: In member function ‘virtual UnitDefinition* ListOfUnitDefinitions::remove(const std::string&)’:
2023-09-08T16:10:24,030   ./base/sbml/UnitDefinition.cpp:1844:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:24,031    1844 |   if (&(sid) != NULL)
2023-09-08T16:10:24,032         |   ^~
2023-09-08T16:10:24,035   ./base/sbml/UnitDefinition.cpp: In copy constructor ‘UnitDefinition::UnitDefinition(const UnitDefinition&)’:
2023-09-08T16:10:24,035   ./base/sbml/UnitDefinition.cpp:104:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:24,036     104 |   if (&orig == NULL)
2023-09-08T16:10:24,037         |   ^~
2023-09-08T16:10:30,562   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T16:10:30,563   ./base/sbml/annotation/CVTerm.cpp:130:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:10:30,564     130 |   if (&orig == NULL)
2023-09-08T16:10:30,565         |             ^
2023-09-08T16:10:30,565   ./base/sbml/annotation/CVTerm.cpp:128:30: note: ‘orig’ declared here
2023-09-08T16:10:30,566     128 | CVTerm::CVTerm(const CVTerm& orig)
2023-09-08T16:10:30,567         |                ~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:30,568   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T16:10:30,569   ./base/sbml/annotation/CVTerm.cpp:150:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:10:30,570     150 |   if (&rhs == NULL)
2023-09-08T16:10:30,570         |            ^
2023-09-08T16:10:30,571   ./base/sbml/annotation/CVTerm.cpp:148:33: note: ‘rhs’ declared here
2023-09-08T16:10:30,571     148 | CVTerm::operator=(const CVTerm& rhs)
2023-09-08T16:10:30,572         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T16:10:30,573   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T16:10:30,573   ./base/sbml/annotation/CVTerm.cpp:256:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T16:10:30,574     256 |   if (&qualifier == NULL)
2023-09-08T16:10:30,575         |                  ^
2023-09-08T16:10:30,575   ./base/sbml/annotation/CVTerm.cpp:253:50: note: ‘qualifier’ declared here
2023-09-08T16:10:30,576     253 | CVTerm::setModelQualifierType(const std::string& qualifier)
2023-09-08T16:10:30,576         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:10:30,577   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T16:10:30,578   ./base/sbml/annotation/CVTerm.cpp:273:18: warning: the compiler can assume that the address of ‘qualifier’ will never be NULL [-Waddress]
2023-09-08T16:10:30,578     273 |   if (&qualifier == NULL)
2023-09-08T16:10:30,579         |                  ^
2023-09-08T16:10:30,579   ./base/sbml/annotation/CVTerm.cpp:270:55: note: ‘qualifier’ declared here
2023-09-08T16:10:30,580     270 | CVTerm::setBiologicalQualifierType(const std::string& qualifier)
2023-09-08T16:10:30,581         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:10:30,581   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T16:10:30,582   ./base/sbml/annotation/CVTerm.cpp:355:17: warning: the compiler can assume that the address of ‘resource’ will never be NULL [-Waddress]
2023-09-08T16:10:30,583     355 |   if (&resource == NULL || resource.empty())
2023-09-08T16:10:30,584         |                 ^
2023-09-08T16:10:30,584   ./base/sbml/annotation/CVTerm.cpp:353:40: note: ‘resource’ declared here
2023-09-08T16:10:30,585     353 | CVTerm::addResource(const std::string& resource)
2023-09-08T16:10:30,586         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:10:30,999   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setModelQualifierType(const std::string&)’:
2023-09-08T16:10:31,000   ./base/sbml/annotation/CVTerm.cpp:256:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:31,001     256 |   if (&qualifier == NULL)
2023-09-08T16:10:31,002         |   ^~
2023-09-08T16:10:31,002   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::setBiologicalQualifierType(const std::string&)’:
2023-09-08T16:10:31,003   ./base/sbml/annotation/CVTerm.cpp:273:3: warning: ‘nonnull’ argument ‘qualifier’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:31,003     273 |   if (&qualifier == NULL)
2023-09-08T16:10:31,004         |   ^~
2023-09-08T16:10:31,005   ./base/sbml/annotation/CVTerm.cpp: In copy constructor ‘CVTerm::CVTerm(const CVTerm&)’:
2023-09-08T16:10:31,005   ./base/sbml/annotation/CVTerm.cpp:130:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:31,006     130 |   if (&orig == NULL)
2023-09-08T16:10:31,007         |   ^~
2023-09-08T16:10:31,008   ./base/sbml/annotation/CVTerm.cpp: In member function ‘CVTerm& CVTerm::operator=(const CVTerm&)’:
2023-09-08T16:10:31,008   ./base/sbml/annotation/CVTerm.cpp:150:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:31,009     150 |   if (&rhs == NULL)
2023-09-08T16:10:31,010         |   ^~
2023-09-08T16:10:31,011   ./base/sbml/annotation/CVTerm.cpp: In member function ‘int CVTerm::addResource(const std::string&)’:
2023-09-08T16:10:31,011   ./base/sbml/annotation/CVTerm.cpp:355:25: warning: ‘nonnull’ argument ‘resource’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:31,012     355 |   if (&resource == NULL || resource.empty())
2023-09-08T16:10:31,012         |       ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:33,763   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T16:10:33,763   ./base/sbml/annotation/Date.cpp:75:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T16:10:33,764      75 |   if (&(date) == NULL)
2023-09-08T16:10:33,764         |               ^
2023-09-08T16:10:33,765   ./base/sbml/annotation/Date.cpp:72:32: note: ‘date’ declared here
2023-09-08T16:10:33,765      72 | Date::Date (const std::string& date) :
2023-09-08T16:10:33,766         |             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:33,767   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T16:10:33,768   ./base/sbml/annotation/Date.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:10:33,768      91 |   if (&orig == NULL)
2023-09-08T16:10:33,769         |             ^
2023-09-08T16:10:33,769   ./base/sbml/annotation/Date.cpp:89:24: note: ‘orig’ declared here
2023-09-08T16:10:33,770      89 | Date::Date(const Date& orig)
2023-09-08T16:10:33,770         |            ~~~~~~~~~~~~^~~~
2023-09-08T16:10:33,772   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T16:10:33,773   ./base/sbml/annotation/Date.cpp:119:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:10:33,774     119 |   if (&rhs == NULL)
2023-09-08T16:10:33,774         |            ^
2023-09-08T16:10:33,775   ./base/sbml/annotation/Date.cpp:117:35: note: ‘rhs’ declared here
2023-09-08T16:10:33,776     117 | Date& Date::operator=(const Date& rhs)
2023-09-08T16:10:33,776         |                       ~~~~~~~~~~~~^~~
2023-09-08T16:10:33,782   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T16:10:33,783   ./base/sbml/annotation/Date.cpp:389:15: warning: the compiler can assume that the address of ‘date’ will never be NULL [-Waddress]
2023-09-08T16:10:33,783     389 |   if (&(date) == NULL)
2023-09-08T16:10:33,784         |               ^
2023-09-08T16:10:33,785   ./base/sbml/annotation/Date.cpp:383:43: note: ‘date’ declared here
2023-09-08T16:10:33,785     383 | Date::setDateAsString (const std::string& date)
2023-09-08T16:10:33,786         |                        ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:34,219   ./base/sbml/annotation/Date.cpp: In copy constructor ‘Date::Date(const Date&)’:
2023-09-08T16:10:34,220   ./base/sbml/annotation/Date.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:34,220      91 |   if (&orig == NULL)
2023-09-08T16:10:34,221         |   ^~
2023-09-08T16:10:34,222   ./base/sbml/annotation/Date.cpp: In member function ‘Date& Date::operator=(const Date&)’:
2023-09-08T16:10:34,222   ./base/sbml/annotation/Date.cpp:119:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:34,223     119 |   if (&rhs == NULL)
2023-09-08T16:10:34,224         |   ^~
2023-09-08T16:10:34,225   ./base/sbml/annotation/Date.cpp: In constructor ‘Date::Date(const std::string&)’:
2023-09-08T16:10:34,225   ./base/sbml/annotation/Date.cpp:75:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:34,226      75 |   if (&(date) == NULL)
2023-09-08T16:10:34,227         |   ^~
2023-09-08T16:10:34,229   ./base/sbml/annotation/Date.cpp: In member function ‘int Date::setDateAsString(const std::string&)’:
2023-09-08T16:10:34,230   ./base/sbml/annotation/Date.cpp:389:3: warning: ‘nonnull’ argument ‘date’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:34,230     389 |   if (&(date) == NULL)
2023-09-08T16:10:34,231         |   ^~
2023-09-08T16:10:34,435   ./base/sbml/annotation/Date.cpp: In member function ‘void Date::parseDateNumbersToString()’:
2023-09-08T16:10:34,436   ./base/sbml/annotation/Date.cpp:443:24: warning: ‘%u’ directive writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T16:10:34,436     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T16:10:34,437         |                        ^~
2023-09-08T16:10:34,437   ./base/sbml/annotation/Date.cpp:443:20: note: directive argument in the range [10, 4294967295]
2023-09-08T16:10:34,438     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T16:10:34,438         |                    ^~~~~~~~
2023-09-08T16:10:34,439   ./base/sbml/annotation/Date.cpp:443:12: note: ‘sprintf’ output between 6 and 23 bytes into a destination of size 10
2023-09-08T16:10:34,439     443 |     sprintf(cdate, "%u-%u-", mYear, mMonth);
2023-09-08T16:10:34,440         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:34,440   ./base/sbml/annotation/Date.cpp:449:23: warning: ‘T’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T16:10:34,441     449 |     sprintf(cdate, "%uT", mDay);
2023-09-08T16:10:34,441         |                       ^
2023-09-08T16:10:34,442   ./base/sbml/annotation/Date.cpp:449:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T16:10:34,442     449 |     sprintf(cdate, "%uT", mDay);
2023-09-08T16:10:34,443         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:34,443   ./base/sbml/annotation/Date.cpp:455:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T16:10:34,444     455 |     sprintf(cdate, "%u:", mHour);
2023-09-08T16:10:34,445         |                       ^
2023-09-08T16:10:34,445   ./base/sbml/annotation/Date.cpp:455:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T16:10:34,446     455 |     sprintf(cdate, "%u:", mHour);
2023-09-08T16:10:34,447         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:34,447   ./base/sbml/annotation/Date.cpp:461:23: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T16:10:34,448     461 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T16:10:34,449         |                       ^
2023-09-08T16:10:34,450   ./base/sbml/annotation/Date.cpp:461:12: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T16:10:34,450     461 |     sprintf(cdate, "%u:", mMinute);
2023-09-08T16:10:34,451         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:34,452   ./base/sbml/annotation/Date.cpp:467:23: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T16:10:34,452     467 |     sprintf(cdate, "%u", mSecond);
2023-09-08T16:10:34,453         |                       ^
2023-09-08T16:10:34,453   ./base/sbml/annotation/Date.cpp:467:12: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T16:10:34,454     467 |     sprintf(cdate, "%u", mSecond);
2023-09-08T16:10:34,455         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:34,455   ./base/sbml/annotation/Date.cpp:486:25: warning: ‘:’ directive writing 1 byte into a region of size between 0 and 8 [-Wformat-overflow=]
2023-09-08T16:10:34,456     486 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T16:10:34,457         |                         ^
2023-09-08T16:10:34,457   ./base/sbml/annotation/Date.cpp:486:14: note: ‘sprintf’ output between 4 and 12 bytes into a destination of size 10
2023-09-08T16:10:34,458     486 |       sprintf(cdate, "%u:", mHoursOffset);
2023-09-08T16:10:34,459         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:34,459   ./base/sbml/annotation/Date.cpp:492:25: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2023-09-08T16:10:34,460     492 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T16:10:34,460         |                         ^
2023-09-08T16:10:34,461   ./base/sbml/annotation/Date.cpp:492:14: note: ‘sprintf’ output between 3 and 11 bytes into a destination of size 10
2023-09-08T16:10:34,461     492 |       sprintf(cdate, "%u", mMinutesOffset);
2023-09-08T16:10:34,461         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:10:37,054   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T16:10:37,054   ./base/sbml/annotation/ModelCreator.cpp:132:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:10:37,055     132 |   if (&orig == NULL)
2023-09-08T16:10:37,055         |             ^
2023-09-08T16:10:37,056   ./base/sbml/annotation/ModelCreator.cpp:130:48: note: ‘orig’ declared here
2023-09-08T16:10:37,056     130 | ModelCreator::ModelCreator(const ModelCreator& orig)
2023-09-08T16:10:37,057         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:37,059   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T16:10:37,059   ./base/sbml/annotation/ModelCreator.cpp:159:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:10:37,060     159 |   if (&rhs == NULL)
2023-09-08T16:10:37,060         |            ^
2023-09-08T16:10:37,061   ./base/sbml/annotation/ModelCreator.cpp:157:59: note: ‘rhs’ declared here
2023-09-08T16:10:37,062     157 | ModelCreator& ModelCreator::operator=(const ModelCreator& rhs)
2023-09-08T16:10:37,062         |                                       ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:10:37,065   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T16:10:37,066   ./base/sbml/annotation/ModelCreator.cpp:233:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:10:37,066     233 |   if (&(name) == NULL)
2023-09-08T16:10:37,067         |               ^
2023-09-08T16:10:37,067   ./base/sbml/annotation/ModelCreator.cpp:231:48: note: ‘name’ declared here
2023-09-08T16:10:37,068     231 | ModelCreator::setFamilyName(const std::string& name)
2023-09-08T16:10:37,069         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:37,070   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T16:10:37,070   ./base/sbml/annotation/ModelCreator.cpp:252:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:10:37,071     252 |   if (&(name) == NULL)
2023-09-08T16:10:37,071         |               ^
2023-09-08T16:10:37,072   ./base/sbml/annotation/ModelCreator.cpp:250:47: note: ‘name’ declared here
2023-09-08T16:10:37,073     250 | ModelCreator::setGivenName(const std::string& name)
2023-09-08T16:10:37,073         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:37,074   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T16:10:37,075   ./base/sbml/annotation/ModelCreator.cpp:271:16: warning: the compiler can assume that the address of ‘email’ will never be NULL [-Waddress]
2023-09-08T16:10:37,075     271 |   if (&(email) == NULL)
2023-09-08T16:10:37,076         |                ^
2023-09-08T16:10:37,077   ./base/sbml/annotation/ModelCreator.cpp:269:43: note: ‘email’ declared here
2023-09-08T16:10:37,077     269 | ModelCreator::setEmail(const std::string& email)
2023-09-08T16:10:37,078         |                        ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:10:37,079   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T16:10:37,079   ./base/sbml/annotation/ModelCreator.cpp:287:23: warning: the compiler can assume that the address of ‘organization’ will never be NULL [-Waddress]
2023-09-08T16:10:37,080     287 |   if (&(organization) == NULL)
2023-09-08T16:10:37,080         |                       ^
2023-09-08T16:10:37,081   ./base/sbml/annotation/ModelCreator.cpp:285:50: note: ‘organization’ declared here
2023-09-08T16:10:37,082     285 | ModelCreator::setOrganization(const std::string& organization)
2023-09-08T16:10:37,082         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T16:10:37,497   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setFamilyName(const std::string&)’:
2023-09-08T16:10:37,498   ./base/sbml/annotation/ModelCreator.cpp:233:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:37,498     233 |   if (&(name) == NULL)
2023-09-08T16:10:37,499         |   ^~
2023-09-08T16:10:37,500   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setGivenName(const std::string&)’:
2023-09-08T16:10:37,500   ./base/sbml/annotation/ModelCreator.cpp:252:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:37,501     252 |   if (&(name) == NULL)
2023-09-08T16:10:37,501         |   ^~
2023-09-08T16:10:37,502   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setEmail(const std::string&)’:
2023-09-08T16:10:37,502   ./base/sbml/annotation/ModelCreator.cpp:271:3: warning: ‘nonnull’ argument ‘email’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:37,503     271 |   if (&(email) == NULL)
2023-09-08T16:10:37,503         |   ^~
2023-09-08T16:10:37,504   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘int ModelCreator::setOrganization(const std::string&)’:
2023-09-08T16:10:37,505   ./base/sbml/annotation/ModelCreator.cpp:287:3: warning: ‘nonnull’ argument ‘organization’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:37,505     287 |   if (&(organization) == NULL)
2023-09-08T16:10:37,506         |   ^~
2023-09-08T16:10:37,509   ./base/sbml/annotation/ModelCreator.cpp: In copy constructor ‘ModelCreator::ModelCreator(const ModelCreator&)’:
2023-09-08T16:10:37,510   ./base/sbml/annotation/ModelCreator.cpp:132:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:37,511     132 |   if (&orig == NULL)
2023-09-08T16:10:37,511         |   ^~
2023-09-08T16:10:37,512   ./base/sbml/annotation/ModelCreator.cpp: In member function ‘ModelCreator& ModelCreator::operator=(const ModelCreator&)’:
2023-09-08T16:10:37,513   ./base/sbml/annotation/ModelCreator.cpp:159:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:37,514     159 |   if (&rhs == NULL)
2023-09-08T16:10:37,514         |   ^~
2023-09-08T16:10:40,373   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T16:10:40,374   ./base/sbml/annotation/ModelHistory.cpp:87:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:10:40,374      87 |   if (&orig == NULL)
2023-09-08T16:10:40,375         |             ^
2023-09-08T16:10:40,376   ./base/sbml/annotation/ModelHistory.cpp:85:48: note: ‘orig’ declared here
2023-09-08T16:10:40,377      85 | ModelHistory::ModelHistory(const ModelHistory& orig)
2023-09-08T16:10:40,377         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:10:40,378   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T16:10:40,379   ./base/sbml/annotation/ModelHistory.cpp:123:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:10:40,380     123 |   if (&rhs == NULL)
2023-09-08T16:10:40,380         |            ^
2023-09-08T16:10:40,381   ./base/sbml/annotation/ModelHistory.cpp:121:45: note: ‘rhs’ declared here
2023-09-08T16:10:40,382     121 | ModelHistory::operator=(const ModelHistory& rhs)
2023-09-08T16:10:40,382         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:10:40,795   ./base/sbml/annotation/ModelHistory.cpp: In copy constructor ‘ModelHistory::ModelHistory(const ModelHistory&)’:
2023-09-08T16:10:40,795   ./base/sbml/annotation/ModelHistory.cpp:87:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:40,796      87 |   if (&orig == NULL)
2023-09-08T16:10:40,796         |   ^~
2023-09-08T16:10:40,797   ./base/sbml/annotation/ModelHistory.cpp: In member function ‘ModelHistory& ModelHistory::operator=(const ModelHistory&)’:
2023-09-08T16:10:40,798   ./base/sbml/annotation/ModelHistory.cpp:123:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:40,798     123 |   if (&rhs == NULL)
2023-09-08T16:10:40,799         |   ^~
2023-09-08T16:10:44,156   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:10:44,156                    from ./base//sbml/Model.h:446,
2023-09-08T16:10:44,157                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:34:
2023-09-08T16:10:44,157   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:10:44,158      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:10:44,159         |                           ^~~~~~~~~~~~~~
2023-09-08T16:10:44,160   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:10:44,160                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:10:44,161                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:10:44,161                    from ./base/sbml/annotation/RDFAnnotationParser.cpp:29:
2023-09-08T16:10:44,162   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:10:44,163     117 |     struct unary_function
2023-09-08T16:10:44,164         |            ^~~~~~~~~~~~~~
2023-09-08T16:10:44,493   ./base/sbml/annotation/RDFAnnotationParser.cpp: In function ‘void logError(XMLInputStream*, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T16:10:44,494   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:10:44,495      67 |   if (&element == NULL || stream == NULL) return;
2023-09-08T16:10:44,495         |                ^
2023-09-08T16:10:44,496   ./base/sbml/annotation/RDFAnnotationParser.cpp:64:51: note: ‘element’ declared here
2023-09-08T16:10:44,497      64 | logError (XMLInputStream* stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T16:10:44,497         |                                   ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:10:45,093   ./base/sbml/annotation/RDFAnnotationParser.cpp:67:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:10:45,094      67 |   if (&element == NULL || stream == NULL) return;
2023-09-08T16:10:45,094         |                ^
2023-09-08T16:11:07,365   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T16:11:07,366   ./base/sbml/conversion/ConversionOption.cpp:110:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:11:07,366     110 |   if (&orig == NULL)
2023-09-08T16:11:07,367         |             ^
2023-09-08T16:11:07,368   ./base/sbml/conversion/ConversionOption.cpp:108:28: note: ‘orig’ declared here
2023-09-08T16:11:07,369     108 |   (const ConversionOption& orig)
2023-09-08T16:11:07,369         |    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:11:07,370   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T16:11:07,370   ./base/sbml/conversion/ConversionOption.cpp:128:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:11:07,371     128 |   if (&rhs == NULL)
2023-09-08T16:11:07,371         |            ^
2023-09-08T16:11:07,372   ./base/sbml/conversion/ConversionOption.cpp:126:53: note: ‘rhs’ declared here
2023-09-08T16:11:07,373     126 | ConversionOption::operator=(const ConversionOption& rhs)
2023-09-08T16:11:07,373         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:11:07,838   ./base/sbml/conversion/ConversionOption.cpp: In copy constructor ‘ConversionOption::ConversionOption(const ConversionOption&)’:
2023-09-08T16:11:07,838   ./base/sbml/conversion/ConversionOption.cpp:110:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:07,839     110 |   if (&orig == NULL)
2023-09-08T16:11:07,839         |   ^~
2023-09-08T16:11:07,840   ./base/sbml/conversion/ConversionOption.cpp: In member function ‘ConversionOption& ConversionOption::operator=(const ConversionOption&)’:
2023-09-08T16:11:07,841   ./base/sbml/conversion/ConversionOption.cpp:128:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:07,841     128 |   if (&rhs == NULL)
2023-09-08T16:11:07,842         |   ^~
2023-09-08T16:11:12,314   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T16:11:12,314   ./base/sbml/conversion/ConversionProperties.cpp:56:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:11:12,315      56 |   if (&orig == NULL)
2023-09-08T16:11:12,316         |             ^
2023-09-08T16:11:12,317   ./base/sbml/conversion/ConversionProperties.cpp:53:72: note: ‘orig’ declared here
2023-09-08T16:11:12,318      53 | ConversionProperties::ConversionProperties(const ConversionProperties& orig)
2023-09-08T16:11:12,318         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:11:12,375   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T16:11:12,376   ./base/sbml/conversion/ConversionProperties.cpp:79:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:11:12,377      79 |   if (&rhs == NULL)
2023-09-08T16:11:12,378         |            ^
2023-09-08T16:11:12,378   ./base/sbml/conversion/ConversionProperties.cpp:77:61: note: ‘rhs’ declared here
2023-09-08T16:11:12,379      77 | ConversionProperties::operator=(const ConversionProperties& rhs)
2023-09-08T16:11:12,380         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:11:12,391   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T16:11:12,392   ./base/sbml/conversion/ConversionProperties.cpp:231:15: warning: the compiler can assume that the address of ‘option’ will never be NULL [-Waddress]
2023-09-08T16:11:12,392     231 |   if (&option == NULL) return;
2023-09-08T16:11:12,393         |               ^
2023-09-08T16:11:12,394   ./base/sbml/conversion/ConversionProperties.cpp:229:57: note: ‘option’ declared here
2023-09-08T16:11:12,395     229 | ConversionProperties::addOption(const ConversionOption &option)
2023-09-08T16:11:12,395         |                                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:11:12,985   ./base/sbml/conversion/ConversionProperties.cpp: In copy constructor ‘ConversionProperties::ConversionProperties(const ConversionProperties&)’:
2023-09-08T16:11:12,986   ./base/sbml/conversion/ConversionProperties.cpp:56:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:12,987      56 |   if (&orig == NULL)
2023-09-08T16:11:12,987         |   ^~
2023-09-08T16:11:12,988   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘ConversionProperties& ConversionProperties::operator=(const ConversionProperties&)’:
2023-09-08T16:11:12,988   ./base/sbml/conversion/ConversionProperties.cpp:79:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:12,989      79 |   if (&rhs == NULL)
2023-09-08T16:11:12,990         |   ^~
2023-09-08T16:11:12,990   ./base/sbml/conversion/ConversionProperties.cpp: In member function ‘virtual void ConversionProperties::addOption(const ConversionOption&)’:
2023-09-08T16:11:12,991   ./base/sbml/conversion/ConversionProperties.cpp:231:3: warning: ‘nonnull’ argument ‘option’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:12,991     231 |   if (&option == NULL) return;
2023-09-08T16:11:12,992         |   ^~
2023-09-08T16:11:18,519   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:18,519                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:18,520                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:18,521                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:18,521                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:18,522                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2023-09-08T16:11:18,522                    from ./base/sbml/conversion/RegisterConverters.cpp:39:
2023-09-08T16:11:18,523   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:18,524      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:18,524         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:18,525   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:11:18,526                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:11:18,526                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:11:18,527                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2023-09-08T16:11:18,528   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:18,529     117 |     struct unary_function
2023-09-08T16:11:18,530         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:22,505   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:22,505                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:22,506                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:22,507                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:22,507                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:22,508                    from ./base/sbml/conversion/SBMLConverter.cpp:34:
2023-09-08T16:11:22,509   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:22,509      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:22,510         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:22,511   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:11:22,511                    from ./base//sbml/conversion/SBMLConverter.h:52:
2023-09-08T16:11:22,512   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:22,513     117 |     struct unary_function
2023-09-08T16:11:22,514         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:22,800   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T16:11:22,800   ./base/sbml/conversion/SBMLConverter.cpp:67:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:11:22,801      67 |   if (&orig == NULL)
2023-09-08T16:11:22,801         |             ^
2023-09-08T16:11:22,802   ./base/sbml/conversion/SBMLConverter.cpp:62:51: note: ‘orig’ declared here
2023-09-08T16:11:22,802      62 | SBMLConverter::SBMLConverter(const SBMLConverter& orig) :
2023-09-08T16:11:22,803         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:11:22,804   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T16:11:22,804   ./base/sbml/conversion/SBMLConverter.cpp:103:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:11:22,805     103 |   if (&rhs == NULL)
2023-09-08T16:11:22,805         |            ^
2023-09-08T16:11:22,806   ./base/sbml/conversion/SBMLConverter.cpp:101:47: note: ‘rhs’ declared here
2023-09-08T16:11:22,806     101 | SBMLConverter::operator=(const SBMLConverter& rhs)
2023-09-08T16:11:22,807         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:11:23,289   ./base/sbml/conversion/SBMLConverter.cpp: In copy constructor ‘SBMLConverter::SBMLConverter(const SBMLConverter&)’:
2023-09-08T16:11:23,290   ./base/sbml/conversion/SBMLConverter.cpp:67:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:23,291      67 |   if (&orig == NULL)
2023-09-08T16:11:23,291         |   ^~
2023-09-08T16:11:23,292   ./base/sbml/conversion/SBMLConverter.cpp: In member function ‘SBMLConverter& SBMLConverter::operator=(const SBMLConverter&)’:
2023-09-08T16:11:23,293   ./base/sbml/conversion/SBMLConverter.cpp:103:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:23,293     103 |   if (&rhs == NULL)
2023-09-08T16:11:23,294         |   ^~
2023-09-08T16:11:26,726   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:26,726                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:26,727                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:26,728                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:26,728                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:26,729                    from ./base//sbml/conversion/SBMLConverterRegistry.h:61,
2023-09-08T16:11:26,730                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:42:
2023-09-08T16:11:26,730   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:26,731      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:26,732         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:26,732   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T16:11:26,733                    from /usr/include/c++/12/vector:66,
2023-09-08T16:11:26,734                    from ./base/sbml/conversion/SBMLConverterRegistry.cpp:37:
2023-09-08T16:11:26,734   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:26,735     117 |     struct unary_function
2023-09-08T16:11:26,735         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:31,036   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:31,036                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:31,037                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:31,038                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:31,038                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:31,039                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:76,
2023-09-08T16:11:31,040                    from ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:36:
2023-09-08T16:11:31,040   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:31,041      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:31,041         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:31,042   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:11:31,042                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:11:31,043                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:11:31,043                    from ./base//sbml/conversion/SBMLFunctionDefinitionConverter.h:75:
2023-09-08T16:11:31,043   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:31,044     117 |     struct unary_function
2023-09-08T16:11:31,044         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:31,352   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:31,352   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:11:31,353     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T16:11:31,353         |              ^
2023-09-08T16:11:31,354   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:110:80: note: ‘props’ declared here
2023-09-08T16:11:31,354     110 | SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:11:31,355         |                                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:11:31,363   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual int SBMLFunctionDefinitionConverter::convert()’:
2023-09-08T16:11:31,363   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:216:26: warning: the address of ‘idsToSkip’ will never be NULL [-Waddress]
2023-09-08T16:11:31,364     216 |           ->isSetMath(), &idsToSkip)
2023-09-08T16:11:31,365         |                          ^~~~~~~~~~
2023-09-08T16:11:31,366   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:153:10: note: ‘idsToSkip’ declared here
2023-09-08T16:11:31,366     153 |   IdList idsToSkip;
2023-09-08T16:11:31,367         |          ^~~~~~~~~
2023-09-08T16:11:31,868   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp: In member function ‘virtual bool SBMLFunctionDefinitionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:31,869   ./base/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:112:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:31,870     112 |   if (&props == NULL || !props.hasOption("expandFunctionDefinitions"))
2023-09-08T16:11:31,870         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:11:35,804   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:35,805                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:35,806                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:35,806                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:35,807                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:35,808                    from ./base//sbml/conversion/SBMLIdConverter.h:78,
2023-09-08T16:11:35,809                    from ./base/sbml/conversion/SBMLIdConverter.cpp:35:
2023-09-08T16:11:35,809   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:35,810      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:35,811         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:35,812   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:11:35,812                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:11:35,813                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:11:35,813                    from ./base//sbml/conversion/SBMLIdConverter.h:77:
2023-09-08T16:11:35,814   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:35,814     117 |     struct unary_function
2023-09-08T16:11:35,815         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:36,112   ./base/sbml/conversion/SBMLIdConverter.cpp: In member function ‘virtual bool SBMLIdConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:36,113   ./base/sbml/conversion/SBMLIdConverter.cpp:115:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:11:36,114     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T16:11:36,114         |              ^
2023-09-08T16:11:36,115   ./base/sbml/conversion/SBMLIdConverter.cpp:113:64: note: ‘props’ declared here
2023-09-08T16:11:36,115     113 | SBMLIdConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:11:36,116         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:11:36,786   ./base/sbml/conversion/SBMLIdConverter.cpp:115:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:36,787     115 |   if (&props == NULL || !props.hasOption("renameSIds"))
2023-09-08T16:11:36,788         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:11:41,386   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:41,387                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:41,387                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:41,388                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:41,389                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:41,389                    from ./base//sbml/conversion/SBMLInferUnitsConverter.h:56,
2023-09-08T16:11:41,390                    from ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:34:
2023-09-08T16:11:41,391   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:41,392      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:41,392         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:41,393   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:11:41,394                    from ./base//sbml/conversion/SBMLConverter.h:52:
2023-09-08T16:11:41,394   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:41,395     117 |     struct unary_function
2023-09-08T16:11:41,396         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:41,689   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T16:11:41,690   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:11:41,691      91 |   if (&rhs == NULL)
2023-09-08T16:11:41,691         |            ^
2023-09-08T16:11:41,692   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:89:67: note: ‘rhs’ declared here
2023-09-08T16:11:41,693      89 | SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter& rhs)
2023-09-08T16:11:41,694         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:11:41,694   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:41,695   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:11:41,696     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T16:11:41,697         |              ^
2023-09-08T16:11:41,697   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:132:72: note: ‘props’ declared here
2023-09-08T16:11:41,698     132 | SBMLInferUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:11:41,698         |                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:11:42,197   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘SBMLInferUnitsConverter& SBMLInferUnitsConverter::operator=(const SBMLInferUnitsConverter&)’:
2023-09-08T16:11:42,198   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:42,199      91 |   if (&rhs == NULL)
2023-09-08T16:11:42,199         |   ^~
2023-09-08T16:11:42,200   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp: In member function ‘virtual bool SBMLInferUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:42,200   ./base/sbml/conversion/SBMLInferUnitsConverter.cpp:134:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:42,201     134 |   if (&props == NULL || !props.hasOption("inferUnits"))
2023-09-08T16:11:42,201         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:11:46,059   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:46,060                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:46,060                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:46,061                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:46,061                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:46,062                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:89,
2023-09-08T16:11:46,063                    from ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:35:
2023-09-08T16:11:46,064   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:46,065      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:46,065         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:46,066   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:11:46,067                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:11:46,068                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:11:46,068                    from ./base//sbml/conversion/SBMLInitialAssignmentConverter.h:88:
2023-09-08T16:11:46,069   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:46,070     117 |     struct unary_function
2023-09-08T16:11:46,070         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:46,364   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp: In member function ‘virtual bool SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:46,365   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:11:46,366     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T16:11:46,367         |              ^
2023-09-08T16:11:46,367   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:107:79: note: ‘props’ declared here
2023-09-08T16:11:46,368     107 | SBMLInitialAssignmentConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:11:46,369         |                                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:11:46,846   ./base/sbml/conversion/SBMLInitialAssignmentConverter.cpp:109:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:46,847     109 |   if (&props == NULL || !props.hasOption("expandInitialAssignments"))
2023-09-08T16:11:46,847         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:11:50,254   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:50,255                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:50,256                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:50,256                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:50,257                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:50,257                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:73,
2023-09-08T16:11:50,258                    from ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:34:
2023-09-08T16:11:50,258   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:50,259      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:50,259         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:50,260   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:11:50,261                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:11:50,261                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:11:50,262                    from ./base//sbml/conversion/SBMLLevelVersionConverter.h:72:
2023-09-08T16:11:50,262   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:50,263     117 |     struct unary_function
2023-09-08T16:11:50,264         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:50,640   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T16:11:50,641   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:11:50,642      89 |   if (&rhs == NULL)
2023-09-08T16:11:50,642         |            ^
2023-09-08T16:11:50,643   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:87:71: note: ‘rhs’ declared here
2023-09-08T16:11:50,644      87 | SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter& rhs)
2023-09-08T16:11:50,645         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:11:50,646   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:50,646   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:11:50,647     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T16:11:50,648         |              ^
2023-09-08T16:11:50,648   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:135:74: note: ‘props’ declared here
2023-09-08T16:11:50,649     135 | SBMLLevelVersionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:11:50,650         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:11:51,229   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘SBMLLevelVersionConverter& SBMLLevelVersionConverter::operator=(const SBMLLevelVersionConverter&)’:
2023-09-08T16:11:51,230   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:89:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:51,230      89 |   if (&rhs == NULL)
2023-09-08T16:11:51,231         |   ^~
2023-09-08T16:11:51,232   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp: In member function ‘virtual bool SBMLLevelVersionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:51,232   ./base/sbml/conversion/SBMLLevelVersionConverter.cpp:137:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:51,233     137 |   if (&props == NULL || !props.hasOption("setLevelAndVersion"))
2023-09-08T16:11:51,233         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:11:56,328   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:11:56,329                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:11:56,330                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:11:56,330                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:11:56,331                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:11:56,331                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:65,
2023-09-08T16:11:56,332                    from ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:35:
2023-09-08T16:11:56,332   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:11:56,333      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:11:56,333         |                           ^~~~~~~~~~~~~~
2023-09-08T16:11:56,334   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:11:56,334                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:11:56,335                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:11:56,336                    from ./base//sbml/conversion/SBMLLocalParameterConverter.h:64:
2023-09-08T16:11:56,336   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:11:56,337     117 |     struct unary_function
2023-09-08T16:11:56,338         |            ^~~~~~~~~~~~~~
2023-09-08T16:11:56,640   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp: In member function ‘virtual bool SBMLLocalParameterConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:11:56,641   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:11:56,641     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T16:11:56,642         |              ^
2023-09-08T16:11:56,643   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:114:76: note: ‘props’ declared here
2023-09-08T16:11:56,644     114 | SBMLLocalParameterConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:11:56,644         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:11:57,181   ./base/sbml/conversion/SBMLLocalParameterConverter.cpp:116:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:11:57,182     116 |   if (&props == NULL || !props.hasOption("promoteLocalParameters"))
2023-09-08T16:11:57,182         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:12:01,028   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:01,029                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:01,030                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:01,031                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:12:01,031                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:12:01,032                    from ./base//sbml/conversion/SBMLReactionConverter.h:59,
2023-09-08T16:12:01,033                    from ./base/sbml/conversion/SBMLReactionConverter.cpp:35:
2023-09-08T16:12:01,034   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:01,035      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:01,035         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:01,036   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:01,036                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:12:01,037                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:12:01,038                    from ./base//sbml/conversion/SBMLReactionConverter.h:58:
2023-09-08T16:12:01,038   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:01,039     117 |     struct unary_function
2023-09-08T16:12:01,039         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:01,351   ./base/sbml/conversion/SBMLReactionConverter.cpp: In member function ‘virtual bool SBMLReactionConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:12:01,352   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:12:01,352     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T16:12:01,353         |              ^
2023-09-08T16:12:01,353   ./base/sbml/conversion/SBMLReactionConverter.cpp:116:70: note: ‘props’ declared here
2023-09-08T16:12:01,354     116 | SBMLReactionConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:12:01,355         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:12:01,959   ./base/sbml/conversion/SBMLReactionConverter.cpp:118:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:01,960     118 |   if (&props == NULL || !props.hasOption("replaceReactions"))
2023-09-08T16:12:01,961         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:12:07,031   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:07,031                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:07,032                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:07,033                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:12:07,034                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:12:07,034                    from ./base//sbml/conversion/SBMLRuleConverter.h:88,
2023-09-08T16:12:07,035                    from ./base/sbml/conversion/SBMLRuleConverter.cpp:36:
2023-09-08T16:12:07,036   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:07,037      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:07,037         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:07,038   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:07,038                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:12:07,039                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:12:07,040                    from ./base//sbml/conversion/SBMLRuleConverter.h:87:
2023-09-08T16:12:07,040   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:07,041     117 |     struct unary_function
2023-09-08T16:12:07,041         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:07,335   ./base/sbml/conversion/SBMLRuleConverter.cpp: In member function ‘virtual bool SBMLRuleConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:12:07,336   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:12:07,336     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T16:12:07,337         |              ^
2023-09-08T16:12:07,338   ./base/sbml/conversion/SBMLRuleConverter.cpp:111:68: note: ‘props’ declared here
2023-09-08T16:12:07,339     111 |   SBMLRuleConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:12:07,339         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:12:08,378   ./base/sbml/conversion/SBMLRuleConverter.cpp:113:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:08,379     113 |   if (&props == NULL || !props.hasOption("sortRules"))
2023-09-08T16:12:08,379         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:12:16,334   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:16,334                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:16,335                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:16,336                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:12:16,336                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:12:16,337                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:61,
2023-09-08T16:12:16,337                    from ./base/sbml/conversion/SBMLStripPackageConverter.cpp:34:
2023-09-08T16:12:16,338   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:16,338      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:16,339         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:16,339   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:16,340                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:12:16,341                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:12:16,341                    from ./base//sbml/conversion/SBMLStripPackageConverter.h:60:
2023-09-08T16:12:16,342   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:16,343     117 |     struct unary_function
2023-09-08T16:12:16,343         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:16,657   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T16:12:16,658   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:12:16,658      86 |   if (&rhs == NULL)
2023-09-08T16:12:16,659         |            ^
2023-09-08T16:12:16,660   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:84:71: note: ‘rhs’ declared here
2023-09-08T16:12:16,661      84 | SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter& rhs)
2023-09-08T16:12:16,661         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:12:16,662   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:12:16,663   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:131:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:12:16,663     131 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T16:12:16,664         |              ^
2023-09-08T16:12:16,665   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:129:74: note: ‘props’ declared here
2023-09-08T16:12:16,666     129 | SBMLStripPackageConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:12:16,666         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:12:17,149   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘SBMLStripPackageConverter& SBMLStripPackageConverter::operator=(const SBMLStripPackageConverter&)’:
2023-09-08T16:12:17,150   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:86:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:17,151      86 |   if (&rhs == NULL)
2023-09-08T16:12:17,151         |   ^~
2023-09-08T16:12:17,152   ./base/sbml/conversion/SBMLStripPackageConverter.cpp: In member function ‘virtual bool SBMLStripPackageConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:12:17,152   ./base/sbml/conversion/SBMLStripPackageConverter.cpp:131:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:17,153     131 |   if (&props == NULL || !props.hasOption("stripPackage"))
2023-09-08T16:12:17,153         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:12:20,736   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:20,736                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:20,737                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:20,737                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:12:20,738                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:12:20,739                    from ./base//sbml/conversion/SBMLUnitsConverter.h:71,
2023-09-08T16:12:20,739                    from ./base/sbml/conversion/SBMLUnitsConverter.cpp:34:
2023-09-08T16:12:20,740   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:20,740      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:20,741         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:20,741   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:20,742                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:12:20,743                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:12:20,744                    from ./base//sbml/conversion/SBMLUnitsConverter.h:70:
2023-09-08T16:12:20,744   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:20,745     117 |     struct unary_function
2023-09-08T16:12:20,746         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:21,087   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T16:12:21,088   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:12:21,089      91 |   if (&rhs == NULL)
2023-09-08T16:12:21,089         |            ^
2023-09-08T16:12:21,090   ./base/sbml/conversion/SBMLUnitsConverter.cpp:89:57: note: ‘rhs’ declared here
2023-09-08T16:12:21,091      89 | SBMLUnitsConverter::operator=(const SBMLUnitsConverter& rhs)
2023-09-08T16:12:21,091         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:12:21,092   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:12:21,093   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:12:21,094     136 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T16:12:21,094         |              ^
2023-09-08T16:12:21,095   ./base/sbml/conversion/SBMLUnitsConverter.cpp:134:67: note: ‘props’ declared here
2023-09-08T16:12:21,096     134 | SBMLUnitsConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:12:21,096         |                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:12:21,899   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘SBMLUnitsConverter& SBMLUnitsConverter::operator=(const SBMLUnitsConverter&)’:
2023-09-08T16:12:21,900   ./base/sbml/conversion/SBMLUnitsConverter.cpp:91:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:21,901      91 |   if (&rhs == NULL)
2023-09-08T16:12:21,901         |   ^~
2023-09-08T16:12:21,902   ./base/sbml/conversion/SBMLUnitsConverter.cpp: In member function ‘virtual bool SBMLUnitsConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:12:21,902   ./base/sbml/conversion/SBMLUnitsConverter.cpp:136:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:21,903     136 |   if (&props == NULL || !props.hasOption("units"))
2023-09-08T16:12:21,903         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:12:28,901   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:28,902                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:28,902                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:28,903                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T16:12:28,903                    from ./base/sbml/extension/ASTBasePlugin.cpp:40:
2023-09-08T16:12:28,904   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:28,904      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:28,905         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:28,906   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:28,906                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:12:28,907                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:12:28,908                    from ./base//sbml/extension/ASTBasePlugin.h:50:
2023-09-08T16:12:28,908   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:28,909     117 |     struct unary_function
2023-09-08T16:12:28,910         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:33,585   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:33,586                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:33,587                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:33,587                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:12:33,588                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:12:33,589                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T16:12:33,589                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:42:
2023-09-08T16:12:33,590   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:33,591      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:33,592         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:33,592   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:33,593                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:12:33,593                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:12:33,594                    from ./base//sbml/extension/ISBMLExtensionNamespaces.h:43,
2023-09-08T16:12:33,595                    from ./base/sbml/extension/ISBMLExtensionNamespaces.cpp:41:
2023-09-08T16:12:33,595   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:33,596     117 |     struct unary_function
2023-09-08T16:12:33,597         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:37,594   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:37,595                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:37,596                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:37,596                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2023-09-08T16:12:37,597                    from ./base/sbml/extension/SBMLDocumentPlugin.cpp:36:
2023-09-08T16:12:37,598   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:37,598      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:37,599         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:37,600   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:37,600                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:12:37,600                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:12:37,601                    from ./base//sbml/extension/SBMLDocumentPlugin.h:51:
2023-09-08T16:12:37,601   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:37,602     117 |     struct unary_function
2023-09-08T16:12:37,602         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:37,914   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T16:12:37,915   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T16:12:37,915     119 |   if (&attributes == NULL) return;
2023-09-08T16:12:37,916         |                   ^
2023-09-08T16:12:37,917   ./base/sbml/extension/SBMLDocumentPlugin.cpp:117:63: note: ‘attributes’ declared here
2023-09-08T16:12:37,917     117 | SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes& attributes)
2023-09-08T16:12:37,918         |                                           ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T16:12:37,918   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T16:12:37,919   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T16:12:37,919     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:12:37,920         |                   ^
2023-09-08T16:12:37,921   ./base/sbml/extension/SBMLDocumentPlugin.cpp:132:58: note: ‘attributes’ declared here
2023-09-08T16:12:37,921     132 | SBMLDocumentPlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T16:12:37,922         |                                     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T16:12:37,923   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T16:12:37,924     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:12:37,924         |                                                  ^
2023-09-08T16:12:37,925   ./base/sbml/extension/SBMLDocumentPlugin.cpp:133:63: note: ‘expectedAttributes’ declared here
2023-09-08T16:12:37,926     133 |                                     const ExpectedAttributes& expectedAttributes)
2023-09-08T16:12:37,926         |                                     ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T16:12:37,927   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::writeAttributes(XMLOutputStream&) const’:
2023-09-08T16:12:37,928   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:12:37,928     169 |   if (&stream == NULL) return;
2023-09-08T16:12:37,929         |               ^
2023-09-08T16:12:37,930   ./base/sbml/extension/SBMLDocumentPlugin.cpp:167:55: note: ‘stream’ declared here
2023-09-08T16:12:37,931     167 | SBMLDocumentPlugin::writeAttributes (XMLOutputStream& stream) const
2023-09-08T16:12:37,931         |                                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:12:38,424   ./base/sbml/extension/SBMLDocumentPlugin.cpp:169:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:38,425     169 |   if (&stream == NULL) return;
2023-09-08T16:12:38,425         |   ^~
2023-09-08T16:12:38,429   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::addExpectedAttributes(ExpectedAttributes&)’:
2023-09-08T16:12:38,430   ./base/sbml/extension/SBMLDocumentPlugin.cpp:119:3: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:38,430     119 |   if (&attributes == NULL) return;
2023-09-08T16:12:38,431         |   ^~
2023-09-08T16:12:38,431   ./base/sbml/extension/SBMLDocumentPlugin.cpp: In member function ‘virtual void SBMLDocumentPlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T16:12:38,432   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:38,432     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:12:38,433         |                   ^
2023-09-08T16:12:38,434   ./base/sbml/extension/SBMLDocumentPlugin.cpp:135:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:38,434     135 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:12:38,435         |                                                  ^
2023-09-08T16:12:42,250   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:42,251                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:42,252                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:42,252                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2023-09-08T16:12:42,253                    from ./base//sbml/extension/SBMLDocumentPluginNotRequired.h:52,
2023-09-08T16:12:42,254                    from ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:36:
2023-09-08T16:12:42,255   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:42,255      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:42,256         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:42,257   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:42,257                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:12:42,258                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:12:42,259                    from ./base//sbml/extension/SBMLDocumentPlugin.h:51:
2023-09-08T16:12:42,260   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:42,260     117 |     struct unary_function
2023-09-08T16:12:42,261         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:42,567   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp: In member function ‘virtual void SBMLDocumentPluginNotRequired::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T16:12:42,567   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T16:12:42,568      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:12:42,569         |                   ^
2023-09-08T16:12:42,570   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:88:69: note: ‘attributes’ declared here
2023-09-08T16:12:42,570      88 | SBMLDocumentPluginNotRequired::readAttributes (const XMLAttributes& attributes,
2023-09-08T16:12:42,571         |                                                ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T16:12:42,572   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T16:12:42,572      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:12:42,573         |                                                  ^
2023-09-08T16:12:42,574   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:89:69: note: ‘expectedAttributes’ declared here
2023-09-08T16:12:42,575      89 |                                           const ExpectedAttributes& expectedAttributes)
2023-09-08T16:12:42,575         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T16:12:43,041   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:43,042      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:12:43,042         |                   ^
2023-09-08T16:12:43,043   ./base/sbml/extension/SBMLDocumentPluginNotRequired.cpp:91:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:43,043      91 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:12:43,044         |                                                  ^
2023-09-08T16:12:46,293   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:46,294                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:46,294                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:46,295                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:12:46,295                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:12:46,296                    from ./base/sbml/extension/SBMLExtension.cpp:34:
2023-09-08T16:12:46,296   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:46,297      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:46,297         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:46,298   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:46,299                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:12:46,300                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:12:46,300                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:12:46,301   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:46,302     117 |     struct unary_function
2023-09-08T16:12:46,302         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:46,656   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T16:12:46,657   ./base/sbml/extension/SBMLExtension.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T16:12:46,657     245 |   if (&extPoint == NULL) return NULL;
2023-09-08T16:12:46,658         |                 ^
2023-09-08T16:12:46,659   ./base/sbml/extension/SBMLExtension.cpp:243:65: note: ‘extPoint’ declared here
2023-09-08T16:12:46,659     243 | SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint& extPoint)
2023-09-08T16:12:46,660         |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:12:46,664   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T16:12:46,665   ./base/sbml/extension/SBMLExtension.cpp:316:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:12:46,665     316 |   if(&uri == NULL) return false;
2023-09-08T16:12:46,666         |           ^
2023-09-08T16:12:46,667   ./base/sbml/extension/SBMLExtension.cpp:314:47: note: ‘uri’ declared here
2023-09-08T16:12:46,667     314 | SBMLExtension::isSupported(const std::string& uri) const
2023-09-08T16:12:46,669         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:12:47,291   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘SBasePluginCreatorBase* SBMLExtension::getSBasePluginCreator(const SBaseExtensionPoint&)’:
2023-09-08T16:12:47,292   ./base/sbml/extension/SBMLExtension.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:47,292     245 |   if (&extPoint == NULL) return NULL;
2023-09-08T16:12:47,293         |   ^~
2023-09-08T16:12:47,305   ./base/sbml/extension/SBMLExtension.cpp: In member function ‘bool SBMLExtension::isSupported(const std::string&) const’:
2023-09-08T16:12:47,306   ./base/sbml/extension/SBMLExtension.cpp:316:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:47,306     316 |   if(&uri == NULL) return false;
2023-09-08T16:12:47,307         |   ^~
2023-09-08T16:12:53,718   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:53,718                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:53,719                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:53,720                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:12:53,720                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:12:53,721                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T16:12:53,721                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:41:
2023-09-08T16:12:53,722   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:53,722      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:53,723         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:53,723   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:53,724                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:12:53,725                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:12:53,726                    from ./base/sbml/extension/SBMLExtensionNamespaces.cpp:39:
2023-09-08T16:12:53,726   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:53,727     117 |     struct unary_function
2023-09-08T16:12:53,728         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:57,755   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:12:57,755                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:12:57,756                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:12:57,757                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:12:57,758                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:12:57,758                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T16:12:57,759                    from ./base/sbml/extension/SBMLExtensionRegistry.cpp:36:
2023-09-08T16:12:57,759   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:12:57,760      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:12:57,761         |                           ^~~~~~~~~~~~~~
2023-09-08T16:12:57,761   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:12:57,762                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:12:57,763                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:12:57,763                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:12:57,764   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:12:57,765     117 |     struct unary_function
2023-09-08T16:12:57,766         |            ^~~~~~~~~~~~~~
2023-09-08T16:12:58,136   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T16:12:58,137   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:12:58,137     103 |   if (&orig != NULL)
2023-09-08T16:12:58,138         |             ^
2023-09-08T16:12:58,138   ./base/sbml/extension/SBMLExtensionRegistry.cpp:101:75: note: ‘orig’ declared here
2023-09-08T16:12:58,139     101 | SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry& orig)
2023-09-08T16:12:58,139         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:12:58,257   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T16:12:58,258   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:11: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:12:58,258     221 |   if(&uri == NULL) return NULL;
2023-09-08T16:12:58,259         |           ^
2023-09-08T16:12:58,259   ./base/sbml/extension/SBMLExtensionRegistry.cpp:219:64: note: ‘uri’ declared here
2023-09-08T16:12:58,260     219 | SBMLExtensionRegistry::getExtensionInternal(const std::string& uri)
2023-09-08T16:12:58,260         |                                             ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:12:58,275   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T16:12:58,275   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T16:12:58,276     245 |   if (&extPoint != NULL)
2023-09-08T16:12:58,277         |                 ^
2023-09-08T16:12:58,278   ./base/sbml/extension/SBMLExtensionRegistry.cpp:241:74: note: ‘extPoint’ declared here
2023-09-08T16:12:58,278     241 | SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint& extPoint)
2023-09-08T16:12:58,279         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:12:58,280   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T16:12:58,281   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:12:58,281     272 |   if (&uri != NULL)
2023-09-08T16:12:58,282         |            ^
2023-09-08T16:12:58,283   ./base/sbml/extension/SBMLExtensionRegistry.cpp:268:66: note: ‘uri’ declared here
2023-09-08T16:12:58,283     268 | SBMLExtensionRegistry::getSBasePluginCreators(const std::string& uri)
2023-09-08T16:12:58,284         |                                               ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:12:58,285   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T16:12:58,285   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T16:12:58,286     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T16:12:58,287         |                ^
2023-09-08T16:12:58,288   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:73: note: ‘extPoint’ declared here
2023-09-08T16:12:58,288     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T16:12:58,289         |                                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:12:58,290   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:12:58,291     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T16:12:58,291         |                                ^
2023-09-08T16:12:58,292   ./base/sbml/extension/SBMLExtensionRegistry.cpp:311:102: note: ‘uri’ declared here
2023-09-08T16:12:58,292     311 | SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint& extPoint, const std::string &uri)
2023-09-08T16:12:58,293         |                                                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:12:58,293   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T16:12:58,294   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:17: warning: the compiler can assume that the address of ‘extPoint’ will never be NULL [-Waddress]
2023-09-08T16:12:58,294     347 |   if (&extPoint == NULL) return 0;
2023-09-08T16:12:58,295         |                 ^
2023-09-08T16:12:58,295   ./base/sbml/extension/SBMLExtensionRegistry.cpp:344:67: note: ‘extPoint’ declared here
2023-09-08T16:12:58,296     344 | SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint& extPoint)
2023-09-08T16:12:58,296         |                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:12:58,297   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’:
2023-09-08T16:12:58,298   ./base/sbml/extension/SBMLExtensionRegistry.cpp:367:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
2023-09-08T16:12:58,298     367 |   return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false;
2023-09-08T16:12:58,299         |                      ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T16:12:59,162   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBasePluginCreatorBase* SBMLExtensionRegistry::getSBasePluginCreator(const SBaseExtensionPoint&, const std::string&)’:
2023-09-08T16:12:59,163   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:16: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:59,164     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T16:12:59,164         |                ^
2023-09-08T16:12:59,165   ./base/sbml/extension/SBMLExtensionRegistry.cpp:313:32: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:59,166     313 |   if(&extPoint == NULL || &uri == NULL) return NULL;
2023-09-08T16:12:59,167         |                                ^
2023-09-08T16:12:59,167   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘unsigned int SBMLExtensionRegistry::getNumExtension(const SBaseExtensionPoint&)’:
2023-09-08T16:12:59,168   ./base/sbml/extension/SBMLExtensionRegistry.cpp:347:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:59,169     347 |   if (&extPoint == NULL) return 0;
2023-09-08T16:12:59,169         |   ^~
2023-09-08T16:12:59,170   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const SBaseExtensionPoint&)’:
2023-09-08T16:12:59,171   ./base/sbml/extension/SBMLExtensionRegistry.cpp:245:3: warning: ‘nonnull’ argument ‘extPoint’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:59,171     245 |   if (&extPoint != NULL)
2023-09-08T16:12:59,172         |   ^~
2023-09-08T16:12:59,173   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘std::__cxx11::list<const SBasePluginCreatorBase*> SBMLExtensionRegistry::getSBasePluginCreators(const std::string&)’:
2023-09-08T16:12:59,173   ./base/sbml/extension/SBMLExtensionRegistry.cpp:272:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:59,174     272 |   if (&uri != NULL)
2023-09-08T16:12:59,175         |   ^~
2023-09-08T16:12:59,176   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘const SBMLExtension* SBMLExtensionRegistry::getExtensionInternal(const std::string&)’:
2023-09-08T16:12:59,176   ./base/sbml/extension/SBMLExtensionRegistry.cpp:221:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:59,177     221 |   if(&uri == NULL) return NULL;
2023-09-08T16:12:59,177         |   ^~
2023-09-08T16:12:59,180   ./base/sbml/extension/SBMLExtensionRegistry.cpp: In copy constructor ‘SBMLExtensionRegistry::SBMLExtensionRegistry(const SBMLExtensionRegistry&)’:
2023-09-08T16:12:59,181   ./base/sbml/extension/SBMLExtensionRegistry.cpp:103:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:12:59,181     103 |   if (&orig != NULL)
2023-09-08T16:12:59,182         |   ^~
2023-09-08T16:13:03,552   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T16:13:03,553   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T16:13:03,554      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T16:13:03,554         |            ^
2023-09-08T16:13:03,555   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:44: note: ‘lhs’ declared here
2023-09-08T16:13:03,555      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T16:13:03,556         |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:13:03,557   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:13:03,557      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T16:13:03,558         |                            ^
2023-09-08T16:13:03,559   ./base/sbml/extension/SBaseExtensionPoint.cpp:90:76: note: ‘rhs’ declared here
2023-09-08T16:13:03,560      90 | bool operator==(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T16:13:03,560         |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:13:03,561   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T16:13:03,562   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: the compiler can assume that the address of ‘lhs’ will never be NULL [-Waddress]
2023-09-08T16:13:03,563     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T16:13:03,563         |            ^
2023-09-08T16:13:03,564   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:43: note: ‘lhs’ declared here
2023-09-08T16:13:03,564     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T16:13:03,565         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:13:03,566   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:13:03,566     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T16:13:03,567         |                            ^
2023-09-08T16:13:03,568   ./base/sbml/extension/SBaseExtensionPoint.cpp:112:75: note: ‘rhs’ declared here
2023-09-08T16:13:03,568     112 | bool operator<(const SBaseExtensionPoint& lhs, const SBaseExtensionPoint& rhs)
2023-09-08T16:13:03,569         |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:13:03,888   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator==(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T16:13:03,888   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:03,889      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T16:13:03,890         |            ^
2023-09-08T16:13:03,890   ./base/sbml/extension/SBaseExtensionPoint.cpp:92:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:03,891      92 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T16:13:03,891         |                            ^
2023-09-08T16:13:03,892   ./base/sbml/extension/SBaseExtensionPoint.cpp: In function ‘bool operator<(const SBaseExtensionPoint&, const SBaseExtensionPoint&)’:
2023-09-08T16:13:03,893   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:12: warning: ‘nonnull’ argument ‘lhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:03,893     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T16:13:03,894         |            ^
2023-09-08T16:13:03,894   ./base/sbml/extension/SBaseExtensionPoint.cpp:114:28: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:03,895     114 |   if (&lhs == NULL || &rhs == NULL) return false;
2023-09-08T16:13:03,895         |                            ^
2023-09-08T16:13:07,226   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:13:07,226                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:13:07,227                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:13:07,227                    from ./base//sbml/extension/SBasePlugin.h:253,
2023-09-08T16:13:07,228                    from ./base/sbml/extension/SBasePlugin.cpp:36:
2023-09-08T16:13:07,229   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:13:07,229      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:13:07,230         |                           ^~~~~~~~~~~~~~
2023-09-08T16:13:07,231   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:13:07,231                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:13:07,232                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:13:07,233                    from ./base//sbml/extension/SBasePlugin.h:251:
2023-09-08T16:13:07,234   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:13:07,234     117 |     struct unary_function
2023-09-08T16:13:07,235         |            ^~~~~~~~~~~~~~
2023-09-08T16:13:07,606   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T16:13:07,607   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T16:13:07,608     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:13:07,608         |                   ^
2023-09-08T16:13:07,609   ./base/sbml/extension/SBasePlugin.cpp:575:51: note: ‘attributes’ declared here
2023-09-08T16:13:07,610     575 | SBasePlugin::readAttributes (const XMLAttributes& attributes,
2023-09-08T16:13:07,610         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T16:13:07,611   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T16:13:07,612     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:13:07,612         |                                                  ^
2023-09-08T16:13:07,613   ./base/sbml/extension/SBasePlugin.cpp:576:56: note: ‘expectedAttributes’ declared here
2023-09-08T16:13:07,614     576 |                              const ExpectedAttributes& expectedAttributes)
2023-09-08T16:13:07,615         |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T16:13:07,615   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T16:13:07,616   ./base/sbml/extension/SBasePlugin.cpp:683:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:13:07,616     683 |   if(&element == NULL) return;
2023-09-08T16:13:07,617         |               ^
2023-09-08T16:13:07,618   ./base/sbml/extension/SBasePlugin.cpp:678:51: note: ‘element’ declared here
2023-09-08T16:13:07,618     678 | SBasePlugin::logUnknownElement(const std::string &element,
2023-09-08T16:13:07,619         |                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:13:07,623   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T16:13:07,624   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T16:13:07,625     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:13:07,625         |                  ^
2023-09-08T16:13:07,626   ./base/sbml/extension/SBasePlugin.cpp:710:53: note: ‘attribute’ declared here
2023-09-08T16:13:07,626     710 | SBasePlugin::logUnknownAttribute(const std::string &attribute,
2023-09-08T16:13:07,627         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:13:07,627   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:13:07,628     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:13:07,629         |                                      ^
2023-09-08T16:13:07,629   ./base/sbml/extension/SBasePlugin.cpp:714:53: note: ‘element’ declared here
2023-09-08T16:13:07,630     714 |                                  const std::string& element)
2023-09-08T16:13:07,631         |                                  ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:13:07,635   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T16:13:07,636   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T16:13:07,637     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:13:07,637         |                  ^
2023-09-08T16:13:07,638   ./base/sbml/extension/SBasePlugin.cpp:744:48: note: ‘attribute’ declared here
2023-09-08T16:13:07,639     744 | SBasePlugin::logEmptyString(const std::string &attribute,
2023-09-08T16:13:07,639         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:13:07,640   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:13:07,641     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:13:07,641         |                                      ^
2023-09-08T16:13:07,642   ./base/sbml/extension/SBasePlugin.cpp:748:56: note: ‘element’ declared here
2023-09-08T16:13:07,643     748 |                                     const std::string& element)
2023-09-08T16:13:07,643         |                                     ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:13:08,193   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T16:13:08,194   ./base/sbml/extension/SBasePlugin.cpp:578:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:08,195     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:13:08,195         |                   ^
2023-09-08T16:13:08,196   ./base/sbml/extension/SBasePlugin.cpp:578:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:08,196     578 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:13:08,197         |                                                  ^
2023-09-08T16:13:08,197   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownElement(const std::string&, unsigned int, unsigned int, unsigned int)’:
2023-09-08T16:13:08,198   ./base/sbml/extension/SBasePlugin.cpp:683:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:08,198     683 |   if(&element == NULL) return;
2023-09-08T16:13:08,199         |   ^~
2023-09-08T16:13:08,199   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logUnknownAttribute(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T16:13:08,200   ./base/sbml/extension/SBasePlugin.cpp:716:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:08,201     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:13:08,201         |                  ^
2023-09-08T16:13:08,202   ./base/sbml/extension/SBasePlugin.cpp:716:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:08,202     716 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:13:08,203         |                                      ^
2023-09-08T16:13:08,203   ./base/sbml/extension/SBasePlugin.cpp: In member function ‘virtual void SBasePlugin::logEmptyString(const std::string&, unsigned int, unsigned int, unsigned int, const std::string&)’:
2023-09-08T16:13:08,204   ./base/sbml/extension/SBasePlugin.cpp:751:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:08,205     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:13:08,205         |                  ^
2023-09-08T16:13:08,206   ./base/sbml/extension/SBasePlugin.cpp:751:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:08,206     751 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:13:08,207         |                                      ^
2023-09-08T16:13:13,021   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:13:13,022                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:13:13,023                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:13:13,023                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:13:13,024                    from ./base/sbml/extension/SBasePluginCreatorBase.cpp:36:
2023-09-08T16:13:13,025   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:13:13,025      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:13:13,026         |                           ^~~~~~~~~~~~~~
2023-09-08T16:13:13,027   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:13:13,027                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:13:13,028                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:13:13,029                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:13:13,030   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:13:13,030     117 |     struct unary_function
2023-09-08T16:13:13,031         |            ^~~~~~~~~~~~~~
2023-09-08T16:13:13,321   ./base/sbml/extension/SBasePluginCreatorBase.cpp: In member function ‘bool SBasePluginCreatorBase::isSupported(const std::string&) const’:
2023-09-08T16:13:13,322   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:13:13,323     148 |   if (&uri == NULL) return false;
2023-09-08T16:13:13,323         |            ^
2023-09-08T16:13:13,324   ./base/sbml/extension/SBasePluginCreatorBase.cpp:146:56: note: ‘uri’ declared here
2023-09-08T16:13:13,324     146 | SBasePluginCreatorBase::isSupported(const std::string& uri) const
2023-09-08T16:13:13,325         |                                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:13:13,817   ./base/sbml/extension/SBasePluginCreatorBase.cpp:148:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:13,817     148 |   if (&uri == NULL) return false;
2023-09-08T16:13:13,818         |   ^~
2023-09-08T16:13:17,596   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:13:17,596                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:13:17,596                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:13:17,597                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:13:17,598                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:13:17,598                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T16:13:17,599                    from ./base/sbml/math/ASTBase.cpp:43:
2023-09-08T16:13:17,599   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:13:17,600      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:13:17,600         |                           ^~~~~~~~~~~~~~
2023-09-08T16:13:17,601   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:13:17,602                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:13:17,603                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:13:17,603                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T16:13:17,604                    from ./base/sbml/math/ASTBase.cpp:41:
2023-09-08T16:13:17,605   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:13:17,605     117 |     struct unary_function
2023-09-08T16:13:17,606         |            ^~~~~~~~~~~~~~
2023-09-08T16:13:17,950   ./base/sbml/math/ASTBase.cpp:67:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:13:17,950      67 | struct CloneASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T16:13:17,951         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:13:17,952   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:13:17,952     117 |     struct unary_function
2023-09-08T16:13:17,953         |            ^~~~~~~~~~~~~~
2023-09-08T16:13:17,954   ./base/sbml/math/ASTBase.cpp:75:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:13:17,954      75 | struct AssignASTPluginEntity : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T16:13:17,955         |                                       ^~~~~~~~~~~~~~
2023-09-08T16:13:17,956   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:13:17,956     117 |     struct unary_function
2023-09-08T16:13:17,957         |            ^~~~~~~~~~~~~~
2023-09-08T16:13:17,958   ./base/sbml/math/ASTBase.cpp:86:46: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:13:17,958      86 | struct CloneASTPluginEntityNoParent : public unary_function<ASTBasePlugin*, ASTBasePlugin*>
2023-09-08T16:13:17,959         |                                              ^~~~~~~~~~~~~~
2023-09-08T16:13:17,960   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:13:17,961     117 |     struct unary_function
2023-09-08T16:13:17,961         |            ^~~~~~~~~~~~~~
2023-09-08T16:13:18,044   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2023-09-08T16:13:18,044   ./base/sbml/math/ASTBase.cpp:1541:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:18,045    1541 |   if (&stream == NULL) return;
2023-09-08T16:13:18,045         |               ^
2023-09-08T16:13:18,046   ./base/sbml/math/ASTBase.cpp:1539:36: note: ‘stream’ declared here
2023-09-08T16:13:18,046    1539 |                 , XMLOutputStream& stream ) const
2023-09-08T16:13:18,047         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:18,052   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2023-09-08T16:13:18,052   ./base/sbml/math/ASTBase.cpp:1572:17: warning: the compiler can assume that the address of ‘mantissa’ will never be NULL [-Waddress]
2023-09-08T16:13:18,053    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T16:13:18,053         |                 ^
2023-09-08T16:13:18,054   ./base/sbml/math/ASTBase.cpp:1568:50: note: ‘mantissa’ declared here
2023-09-08T16:13:18,054    1568 | ASTBase::writeENotation (  const std::string&    mantissa
2023-09-08T16:13:18,055         |                            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:13:18,055   ./base/sbml/math/ASTBase.cpp:1572:38: warning: the compiler can assume that the address of ‘exponent’ will never be NULL [-Waddress]
2023-09-08T16:13:18,056    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T16:13:18,056         |                                      ^
2023-09-08T16:13:18,057   ./base/sbml/math/ASTBase.cpp:1569:56: note: ‘exponent’ declared here
2023-09-08T16:13:18,057    1569 |                                , const std::string&    exponent
2023-09-08T16:13:18,058         |                                  ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:13:18,059   ./base/sbml/math/ASTBase.cpp:1572:57: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:18,059    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T16:13:18,060         |                                                         ^
2023-09-08T16:13:18,061   ./base/sbml/math/ASTBase.cpp:1570:36: note: ‘stream’ declared here
2023-09-08T16:13:18,062    1570 |                 , XMLOutputStream& stream ) const
2023-09-08T16:13:18,062         |                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:18,065   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2023-09-08T16:13:18,066   ./base/sbml/math/ASTBase.cpp:1585:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:18,066    1585 |   if (&stream == NULL) return;
2023-09-08T16:13:18,067         |               ^
2023-09-08T16:13:18,067   ./base/sbml/math/ASTBase.cpp:1583:44: note: ‘stream’ declared here
2023-09-08T16:13:18,068    1583 | ASTBase::writeNegInfinity(XMLOutputStream& stream) const
2023-09-08T16:13:18,069         |                           ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:18,070   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2023-09-08T16:13:18,071   ./base/sbml/math/ASTBase.cpp:1596:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:18,072    1596 |   if (&stream == NULL) return;
2023-09-08T16:13:18,072         |               ^
2023-09-08T16:13:18,073   ./base/sbml/math/ASTBase.cpp:1594:41: note: ‘stream’ declared here
2023-09-08T16:13:18,074    1594 | ASTBase::writeConstant(XMLOutputStream& stream, const std::string & name) const
2023-09-08T16:13:18,074         |                        ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:18,075   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2023-09-08T16:13:18,075   ./base/sbml/math/ASTBase.cpp:1606:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:18,076    1606 |   if (&stream == NULL) return;
2023-09-08T16:13:18,076         |               ^
2023-09-08T16:13:18,077   ./base/sbml/math/ASTBase.cpp:1604:49: note: ‘stream’ declared here
2023-09-08T16:13:18,077    1604 | ASTBase::writeStartEndElement (XMLOutputStream& stream) const
2023-09-08T16:13:18,078         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:18,097   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::logError(XMLInputStream&, const XMLToken&, SBMLErrorCode_t, const std::string&)’:
2023-09-08T16:13:18,098   ./base/sbml/math/ASTBase.cpp:1910:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:13:18,098    1910 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T16:13:18,099         |                ^
2023-09-08T16:13:18,100   ./base/sbml/math/ASTBase.cpp:1907:60: note: ‘element’ declared here
2023-09-08T16:13:18,100    1907 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T16:13:18,101         |                                            ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:13:18,101   ./base/sbml/math/ASTBase.cpp:1910:35: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:18,102    1910 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T16:13:18,103         |                                   ^
2023-09-08T16:13:18,104   ./base/sbml/math/ASTBase.cpp:1907:36: note: ‘stream’ declared here
2023-09-08T16:13:18,104    1907 | ASTBase::logError (XMLInputStream& stream, const XMLToken& element, SBMLErrorCode_t code,
2023-09-08T16:13:18,105         |                    ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:18,734   ./base/sbml/math/ASTBase.cpp:1910:35: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,735    1910 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T16:13:18,735         |                                   ^
2023-09-08T16:13:18,736   ./base/sbml/math/ASTBase.cpp:1910:16: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,737    1910 |   if (&element == NULL || &stream == NULL) return;
2023-09-08T16:13:18,737         |                ^
2023-09-08T16:13:18,761   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(const std::string&, const std::string&, XMLOutputStream&) const’:
2023-09-08T16:13:18,762   ./base/sbml/math/ASTBase.cpp:1572:17: warning: ‘nonnull’ argument ‘mantissa’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,762    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T16:13:18,763         |                 ^
2023-09-08T16:13:18,764   ./base/sbml/math/ASTBase.cpp:1572:38: warning: ‘nonnull’ argument ‘exponent’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,764    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T16:13:18,765         |                                      ^
2023-09-08T16:13:18,766   ./base/sbml/math/ASTBase.cpp:1572:46: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,766    1572 |   if (&mantissa == NULL || &exponent == NULL || &stream == NULL) return;
2023-09-08T16:13:18,767         |                                              ^
2023-09-08T16:13:18,768   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeNegInfinity(XMLOutputStream&) const’:
2023-09-08T16:13:18,768   ./base/sbml/math/ASTBase.cpp:1585:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,769    1585 |   if (&stream == NULL) return;
2023-09-08T16:13:18,769         |   ^~
2023-09-08T16:13:18,770   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeConstant(XMLOutputStream&, const std::string&) const’:
2023-09-08T16:13:18,770   ./base/sbml/math/ASTBase.cpp:1596:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,771    1596 |   if (&stream == NULL) return;
2023-09-08T16:13:18,771         |   ^~
2023-09-08T16:13:18,772   ./base/sbml/math/ASTBase.cpp: In member function ‘void ASTBase::writeStartEndElement(XMLOutputStream&) const’:
2023-09-08T16:13:18,772   ./base/sbml/math/ASTBase.cpp:1606:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,773    1606 |   if (&stream == NULL) return;
2023-09-08T16:13:18,773         |   ^~
2023-09-08T16:13:18,784   ./base/sbml/math/ASTBase.cpp: In member function ‘virtual void ASTBase::writeENotation(double, long int, XMLOutputStream&) const’:
2023-09-08T16:13:18,785   ./base/sbml/math/ASTBase.cpp:1541:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:18,785    1541 |   if (&stream == NULL) return;
2023-09-08T16:13:18,786         |   ^~
2023-09-08T16:13:25,823   ./base/sbml/math/ASTBinaryFunctionNode.cpp: In member function ‘virtual void ASTBinaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T16:13:25,824   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:25,825     326 |   if (&stream == NULL) return;
2023-09-08T16:13:25,825         |               ^
2023-09-08T16:13:25,826   ./base/sbml/math/ASTBinaryFunctionNode.cpp:324:47: note: ‘stream’ declared here
2023-09-08T16:13:25,827     324 | ASTBinaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T16:13:25,828         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:26,242   ./base/sbml/math/ASTBinaryFunctionNode.cpp:326:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:26,243     326 |   if (&stream == NULL) return;
2023-09-08T16:13:26,244         |   ^~
2023-09-08T16:13:29,802   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:13:29,803                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:13:29,803                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:13:29,804                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T16:13:29,805                    from ./base/sbml/math/ASTCSymbol.cpp:39:
2023-09-08T16:13:29,805   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:13:29,806      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:13:29,807         |                           ^~~~~~~~~~~~~~
2023-09-08T16:13:29,807   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:13:29,808                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:13:29,809                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:13:29,810                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T16:13:29,810                    from ./base//sbml/math/ASTCSymbol.h:42,
2023-09-08T16:13:29,811                    from ./base/sbml/math/ASTCSymbol.cpp:36:
2023-09-08T16:13:29,812   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:13:29,813     117 |     struct unary_function
2023-09-08T16:13:29,813         |            ^~~~~~~~~~~~~~
2023-09-08T16:13:34,550   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T16:13:34,550   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T16:13:34,551      54 |   if (&s == NULL) return s;
2023-09-08T16:13:34,552         |          ^
2023-09-08T16:13:34,552   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T16:13:34,553      52 | trim (const string& s)
2023-09-08T16:13:34,553         |       ~~~~~~~~~~~~~~^
2023-09-08T16:13:34,999   ./base/sbml/math/ASTCSymbolAvogadroNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:35,000      54 |   if (&s == NULL) return s;
2023-09-08T16:13:35,001         |   ^~
2023-09-08T16:13:38,140   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T16:13:38,141   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T16:13:38,142      54 |   if (&s == NULL) return s;
2023-09-08T16:13:38,143         |          ^
2023-09-08T16:13:38,143   ./base/sbml/math/ASTCSymbolDelayNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T16:13:38,144      52 | trim (const string& s)
2023-09-08T16:13:38,144         |       ~~~~~~~~~~~~~~^
2023-09-08T16:13:38,162   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2023-09-08T16:13:38,162   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:38,163     273 |   if (&stream == NULL) return;
2023-09-08T16:13:38,164         |               ^
2023-09-08T16:13:38,165   ./base/sbml/math/ASTCSymbolDelayNode.cpp:271:45: note: ‘stream’ declared here
2023-09-08T16:13:38,165     271 | ASTCSymbolDelayNode::write(XMLOutputStream& stream) const
2023-09-08T16:13:38,166         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:38,602   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T16:13:38,603   ./base/sbml/math/ASTCSymbolDelayNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:38,604      54 |   if (&s == NULL) return s;
2023-09-08T16:13:38,604         |   ^~
2023-09-08T16:13:38,606   ./base/sbml/math/ASTCSymbolDelayNode.cpp: In member function ‘virtual void ASTCSymbolDelayNode::write(XMLOutputStream&) const’:
2023-09-08T16:13:38,607   ./base/sbml/math/ASTCSymbolDelayNode.cpp:273:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:38,607     273 |   if (&stream == NULL) return;
2023-09-08T16:13:38,608         |   ^~
2023-09-08T16:13:41,974   ./base/sbml/math/ASTCSymbolTimeNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T16:13:41,975   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T16:13:41,976      54 |   if (&s == NULL) return s;
2023-09-08T16:13:41,976         |          ^
2023-09-08T16:13:41,977   ./base/sbml/math/ASTCSymbolTimeNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T16:13:41,978      52 | trim (const string& s)
2023-09-08T16:13:41,978         |       ~~~~~~~~~~~~~~^
2023-09-08T16:13:42,421   ./base/sbml/math/ASTCSymbolTimeNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:42,421      54 |   if (&s == NULL) return s;
2023-09-08T16:13:42,422         |   ^~
2023-09-08T16:13:45,439   ./base/sbml/math/ASTCiFunctionNode.cpp: In member function ‘virtual void ASTCiFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T16:13:45,440   ./base/sbml/math/ASTCiFunctionNode.cpp:216:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:13:45,441     216 |   if (&stream == NULL) return;
2023-09-08T16:13:45,442         |               ^
2023-09-08T16:13:45,442   ./base/sbml/math/ASTCiFunctionNode.cpp:214:43: note: ‘stream’ declared here
2023-09-08T16:13:45,443     214 | ASTCiFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T16:13:45,443         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:13:45,858   ./base/sbml/math/ASTCiFunctionNode.cpp:216:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:45,859     216 |   if (&stream == NULL) return;
2023-09-08T16:13:45,859         |   ^~
2023-09-08T16:13:48,553   ./base/sbml/math/ASTCiNumberNode.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T16:13:48,553   ./base/sbml/math/ASTCiNumberNode.cpp:54:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T16:13:48,554      54 |   if (&s == NULL) return s;
2023-09-08T16:13:48,555         |          ^
2023-09-08T16:13:48,555   ./base/sbml/math/ASTCiNumberNode.cpp:52:21: note: ‘s’ declared here
2023-09-08T16:13:48,556      52 | trim (const string& s)
2023-09-08T16:13:48,556         |       ~~~~~~~~~~~~~~^
2023-09-08T16:13:49,001   ./base/sbml/math/ASTCiNumberNode.cpp:54:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:49,002      54 |   if (&s == NULL) return s;
2023-09-08T16:13:49,002         |   ^~
2023-09-08T16:13:52,117   ./base/sbml/math/ASTCnBase.cpp: In member function ‘int ASTCnBase::setUnits(const std::string&)’:
2023-09-08T16:13:52,118   ./base/sbml/math/ASTCnBase.cpp:116:16: warning: the compiler can assume that the address of ‘units’ will never be NULL [-Waddress]
2023-09-08T16:13:52,119     116 |   if (&(units) == NULL)
2023-09-08T16:13:52,119         |                ^
2023-09-08T16:13:52,120   ./base/sbml/math/ASTCnBase.cpp:114:40: note: ‘units’ declared here
2023-09-08T16:13:52,121     114 | ASTCnBase::setUnits(const std::string& units)
2023-09-08T16:13:52,122         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:13:52,553   ./base/sbml/math/ASTCnBase.cpp:116:3: warning: ‘nonnull’ argument ‘units’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:13:52,554     116 |   if (&(units) == NULL)
2023-09-08T16:13:52,554         |   ^~
2023-09-08T16:14:08,730   ./base/sbml/math/ASTConstantNumberNode.cpp: In member function ‘virtual void ASTConstantNumberNode::write(XMLOutputStream&) const’:
2023-09-08T16:14:08,730   ./base/sbml/math/ASTConstantNumberNode.cpp:179:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:14:08,731     179 |   if (&stream == NULL) return;
2023-09-08T16:14:08,732         |               ^
2023-09-08T16:14:08,732   ./base/sbml/math/ASTConstantNumberNode.cpp:177:47: note: ‘stream’ declared here
2023-09-08T16:14:08,733     177 | ASTConstantNumberNode::write(XMLOutputStream& stream) const
2023-09-08T16:14:08,734         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:14:09,138   ./base/sbml/math/ASTConstantNumberNode.cpp:179:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:14:09,139     179 |   if (&stream == NULL) return;
2023-09-08T16:14:09,139         |   ^~
2023-09-08T16:14:12,421   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:14:12,422                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:14:12,423                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:14:12,423                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T16:14:12,424                    from ./base/sbml/math/ASTFunction.cpp:38:
2023-09-08T16:14:12,425   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:14:12,426      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:14:12,426         |                           ^~~~~~~~~~~~~~
2023-09-08T16:14:12,427   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:14:12,428                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:14:12,428                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:14:12,428                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T16:14:12,429                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T16:14:12,429                    from ./base/sbml/math/ASTFunction.cpp:36:
2023-09-08T16:14:12,430   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:14:12,430     117 |     struct unary_function
2023-09-08T16:14:12,431         |            ^~~~~~~~~~~~~~
2023-09-08T16:14:12,721   ./base/sbml/math/ASTFunction.cpp: In function ‘const std::string trim(const std::string&)’:
2023-09-08T16:14:12,722   ./base/sbml/math/ASTFunction.cpp:148:10: warning: the compiler can assume that the address of ‘s’ will never be NULL [-Waddress]
2023-09-08T16:14:12,722     148 |   if (&s == NULL) return s;
2023-09-08T16:14:12,723         |          ^
2023-09-08T16:14:12,723   ./base/sbml/math/ASTFunction.cpp:146:21: note: ‘s’ declared here
2023-09-08T16:14:12,724     146 | trim (const string& s)
2023-09-08T16:14:12,724         |       ~~~~~~~~~~~~~~^
2023-09-08T16:14:13,557   ./base/sbml/math/ASTFunction.cpp:148:3: warning: ‘nonnull’ argument ‘s’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:14:13,557     148 |   if (&s == NULL) return s;
2023-09-08T16:14:13,558         |   ^~
2023-09-08T16:14:21,411   ./base/sbml/math/ASTFunctionBase.cpp: In member function ‘void ASTFunctionBase::writeArgumentsOfType(XMLOutputStream&, int) const’:
2023-09-08T16:14:21,411   ./base/sbml/math/ASTFunctionBase.cpp:349:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:14:21,412     349 |   if (&stream == NULL) return;
2023-09-08T16:14:21,413         |               ^
2023-09-08T16:14:21,413   ./base/sbml/math/ASTFunctionBase.cpp:347:56: note: ‘stream’ declared here
2023-09-08T16:14:21,414     347 | ASTFunctionBase::writeArgumentsOfType(XMLOutputStream& stream, int type) const
2023-09-08T16:14:21,415         |                                       ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:14:21,920   ./base/sbml/math/ASTFunctionBase.cpp:349:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:14:21,921     349 |   if (&stream == NULL) return;
2023-09-08T16:14:21,922         |   ^~
2023-09-08T16:14:25,154   ./base/sbml/math/ASTLambdaFunctionNode.cpp: In member function ‘virtual void ASTLambdaFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T16:14:25,155   ./base/sbml/math/ASTLambdaFunctionNode.cpp:325:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:14:25,156     325 |   if (&stream == NULL) return;
2023-09-08T16:14:25,156         |               ^
2023-09-08T16:14:25,157   ./base/sbml/math/ASTLambdaFunctionNode.cpp:323:47: note: ‘stream’ declared here
2023-09-08T16:14:25,158     323 | ASTLambdaFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T16:14:25,159         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:14:25,603   ./base/sbml/math/ASTLambdaFunctionNode.cpp:325:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:14:25,604     325 |   if (&stream == NULL) return;
2023-09-08T16:14:25,604         |   ^~
2023-09-08T16:14:29,208   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:14:29,208                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:14:29,209                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:14:29,210                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T16:14:29,210                    from ./base/sbml/math/ASTNaryFunctionNode.cpp:40:
2023-09-08T16:14:29,211   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:14:29,211      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:14:29,212         |                           ^~~~~~~~~~~~~~
2023-09-08T16:14:29,212   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:14:29,213                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:14:29,214                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:14:29,214                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T16:14:29,214                    from ./base//sbml/math/ASTFunctionBase.h:42,
2023-09-08T16:14:29,215                    from ./base//sbml/math/ASTNaryFunctionNode.h:42,
2023-09-08T16:14:29,216                    from ./base/sbml/math/ASTNaryFunctionNode.cpp:36:
2023-09-08T16:14:29,216   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:14:29,217     117 |     struct unary_function
2023-09-08T16:14:29,217         |            ^~~~~~~~~~~~~~
2023-09-08T16:14:29,519   ./base/sbml/math/ASTNaryFunctionNode.cpp: In member function ‘virtual void ASTNaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T16:14:29,519   ./base/sbml/math/ASTNaryFunctionNode.cpp:374:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:14:29,520     374 |   if (&stream == NULL) return;
2023-09-08T16:14:29,520         |               ^
2023-09-08T16:14:29,521   ./base/sbml/math/ASTNaryFunctionNode.cpp:372:45: note: ‘stream’ declared here
2023-09-08T16:14:29,522     372 | ASTNaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T16:14:29,522         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:14:30,028   ./base/sbml/math/ASTNaryFunctionNode.cpp:374:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:14:30,029     374 |   if (&stream == NULL) return;
2023-09-08T16:14:30,030         |   ^~
2023-09-08T16:14:33,965   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:14:33,966                    from ./base//sbml/Model.h:446,
2023-09-08T16:14:33,966                    from ./base/sbml/math/ASTNode.cpp:41:
2023-09-08T16:14:33,967   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:14:33,968      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:14:33,969         |                           ^~~~~~~~~~~~~~
2023-09-08T16:14:33,970   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:14:33,970                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:14:33,971                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:14:33,971                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T16:14:33,972                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T16:14:33,973                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T16:14:33,973                    from ./base/sbml/math/ASTNode.cpp:34:
2023-09-08T16:14:33,974   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:14:33,975     117 |     struct unary_function
2023-09-08T16:14:33,975         |            ^~~~~~~~~~~~~~
2023-09-08T16:14:34,321   ./base/sbml/math/ASTNode.cpp:141:39: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:14:34,321     141 | struct DeleteASTPluginEntity : public unary_function<ASTBasePlugin*, void>
2023-09-08T16:14:34,322         |                                       ^~~~~~~~~~~~~~
2023-09-08T16:14:34,323   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:14:34,324     117 |     struct unary_function
2023-09-08T16:14:34,325         |            ^~~~~~~~~~~~~~
2023-09-08T16:14:44,178   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:14:44,179                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:14:44,179                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:14:44,180                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T16:14:44,180                    from ./base/sbml/math/ASTNumber.cpp:38:
2023-09-08T16:14:44,181   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:14:44,181      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:14:44,182         |                           ^~~~~~~~~~~~~~
2023-09-08T16:14:44,183   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:14:44,183                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:14:44,184                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:14:44,184                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T16:14:44,185                    from ./base//sbml/math/ASTNumber.h:42,
2023-09-08T16:14:44,185                    from ./base/sbml/math/ASTNumber.cpp:36:
2023-09-08T16:14:44,186   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:14:44,186     117 |     struct unary_function
2023-09-08T16:14:44,187         |            ^~~~~~~~~~~~~~
2023-09-08T16:14:50,523   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp: In member function ‘virtual void ASTPiecewiseFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T16:14:50,524   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:14:50,524     714 |   if (&stream == NULL) return;
2023-09-08T16:14:50,525         |               ^
2023-09-08T16:14:50,526   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:712:50: note: ‘stream’ declared here
2023-09-08T16:14:50,526     712 | ASTPiecewiseFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T16:14:50,527         |                                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:14:50,985   ./base/sbml/math/ASTPiecewiseFunctionNode.cpp:714:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:14:50,986     714 |   if (&stream == NULL) return;
2023-09-08T16:14:50,987         |   ^~
2023-09-08T16:14:54,043   ./base/sbml/math/ASTQualifierNode.cpp: In member function ‘virtual void ASTQualifierNode::write(XMLOutputStream&) const’:
2023-09-08T16:14:54,044   ./base/sbml/math/ASTQualifierNode.cpp:157:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:14:54,044     157 |   if (&stream == NULL) return;
2023-09-08T16:14:54,045         |               ^
2023-09-08T16:14:54,046   ./base/sbml/math/ASTQualifierNode.cpp:155:42: note: ‘stream’ declared here
2023-09-08T16:14:54,046     155 | ASTQualifierNode::write(XMLOutputStream& stream) const
2023-09-08T16:14:54,047         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:14:54,454   ./base/sbml/math/ASTQualifierNode.cpp:157:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:14:54,454     157 |   if (&stream == NULL) return;
2023-09-08T16:14:54,455         |   ^~
2023-09-08T16:14:56,983   ./base/sbml/math/ASTSemanticsNode.cpp: In member function ‘virtual void ASTSemanticsNode::write(XMLOutputStream&) const’:
2023-09-08T16:14:56,984   ./base/sbml/math/ASTSemanticsNode.cpp:255:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:14:56,985     255 |   if (&stream == NULL) return;
2023-09-08T16:14:56,986         |               ^
2023-09-08T16:14:56,987   ./base/sbml/math/ASTSemanticsNode.cpp:253:42: note: ‘stream’ declared here
2023-09-08T16:14:56,987     253 | ASTSemanticsNode::write(XMLOutputStream& stream) const
2023-09-08T16:14:56,988         |                         ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:14:57,416   ./base/sbml/math/ASTSemanticsNode.cpp:255:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:14:57,417     255 |   if (&stream == NULL) return;
2023-09-08T16:14:57,417         |   ^~
2023-09-08T16:15:01,283   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:15:01,284                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:15:01,285                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:15:01,285                    from ./base//sbml/extension/ASTBasePlugin.h:52,
2023-09-08T16:15:01,286                    from ./base/sbml/math/ASTTypes.cpp:38:
2023-09-08T16:15:01,286   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:15:01,287      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:15:01,287         |                           ^~~~~~~~~~~~~~
2023-09-08T16:15:01,288   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:15:01,288                    from ./base//sbml/math/ASTTypes.h:183,
2023-09-08T16:15:01,289                    from ./base/sbml/math/ASTTypes.cpp:36:
2023-09-08T16:15:01,290   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:15:01,290     117 |     struct unary_function
2023-09-08T16:15:01,291         |            ^~~~~~~~~~~~~~
2023-09-08T16:15:01,596   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2023-09-08T16:15:01,597   ./base/sbml/math/ASTTypes.cpp:439:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:15:01,597     439 |   if (&name == NULL)
2023-09-08T16:15:01,598         |             ^
2023-09-08T16:15:01,599   ./base/sbml/math/ASTTypes.cpp:437:56: note: ‘name’ declared here
2023-09-08T16:15:01,599     437 | isCoreTopLevelMathMLFunctionNodeTag(const std::string& name)
2023-09-08T16:15:01,600         |                                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:15:01,601   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2023-09-08T16:15:01,602   ./base/sbml/math/ASTTypes.cpp:465:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:15:01,602     465 |   if (&name == NULL)
2023-09-08T16:15:01,603         |             ^
2023-09-08T16:15:01,604   ./base/sbml/math/ASTTypes.cpp:463:54: note: ‘name’ declared here
2023-09-08T16:15:01,605     463 | isCoreTopLevelMathMLNumberNodeTag(const std::string& name)
2023-09-08T16:15:01,605         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:15:02,070   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLFunctionNodeTag(const std::string&)’:
2023-09-08T16:15:02,071   ./base/sbml/math/ASTTypes.cpp:439:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:15:02,072     439 |   if (&name == NULL)
2023-09-08T16:15:02,072         |   ^~
2023-09-08T16:15:02,073   ./base/sbml/math/ASTTypes.cpp: In function ‘bool isCoreTopLevelMathMLNumberNodeTag(const std::string&)’:
2023-09-08T16:15:02,074   ./base/sbml/math/ASTTypes.cpp:465:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:15:02,074     465 |   if (&name == NULL)
2023-09-08T16:15:02,075         |   ^~
2023-09-08T16:15:04,530   ./base/sbml/math/ASTUnaryFunctionNode.cpp: In member function ‘virtual void ASTUnaryFunctionNode::write(XMLOutputStream&) const’:
2023-09-08T16:15:04,530   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:15:04,531     192 |   if (&stream == NULL) return;
2023-09-08T16:15:04,532         |               ^
2023-09-08T16:15:04,533   ./base/sbml/math/ASTUnaryFunctionNode.cpp:190:46: note: ‘stream’ declared here
2023-09-08T16:15:04,533     190 | ASTUnaryFunctionNode::write(XMLOutputStream& stream) const
2023-09-08T16:15:04,534         |                             ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:15:04,939   ./base/sbml/math/ASTUnaryFunctionNode.cpp:192:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:15:04,940     192 |   if (&stream == NULL) return;
2023-09-08T16:15:04,940         |   ^~
2023-09-08T16:15:10,163   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:15:10,163                    from ./base//sbml/Model.h:446,
2023-09-08T16:15:10,164                    from L3Parser.ypp:83:
2023-09-08T16:15:10,164   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:15:10,165      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:15:10,165         |                           ^~~~~~~~~~~~~~
2023-09-08T16:15:10,166   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:15:10,166                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:15:10,167                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:15:10,167                    from ./base//sbml/math/ASTBase.h:44,
2023-09-08T16:15:10,168                    from ./base//sbml/math/ASTFunction.h:42,
2023-09-08T16:15:10,169                    from ./base//sbml/math/ASTNode.h:147,
2023-09-08T16:15:10,169                    from ./base//sbml/math/L3Parser.h:37,
2023-09-08T16:15:10,170                    from L3Parser.ypp:82:
2023-09-08T16:15:10,171   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:15:10,171     117 |     struct unary_function
2023-09-08T16:15:10,172         |            ^~~~~~~~~~~~~~
2023-09-08T16:15:20,697   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:15:20,698                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:15:20,698                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:15:20,699                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:15:20,700                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:15:20,701                    from ./base//sbml/extension/SBMLExtensionRegistry.h:43,
2023-09-08T16:15:20,701                    from ./base/sbml/math/L3ParserSettings.cpp:35:
2023-09-08T16:15:20,702   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:15:20,703      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:15:20,704         |                           ^~~~~~~~~~~~~~
2023-09-08T16:15:20,704   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T16:15:20,705                    from /usr/include/c++/12/vector:66,
2023-09-08T16:15:20,706                    from ./base//sbml/math/L3ParserSettings.h:313,
2023-09-08T16:15:20,706                    from ./base/sbml/math/L3ParserSettings.cpp:34:
2023-09-08T16:15:20,707   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:15:20,708     117 |     struct unary_function
2023-09-08T16:15:20,708         |            ^~~~~~~~~~~~~~
2023-09-08T16:15:24,575   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2023-09-08T16:15:24,576   ./base/sbml/math/MathML.cpp:90:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:15:24,577      90 |   if (&stream == NULL) return NULL;
2023-09-08T16:15:24,578         |               ^
2023-09-08T16:15:24,579   ./base/sbml/math/MathML.cpp:88:29: note: ‘stream’ declared here
2023-09-08T16:15:24,580      88 | readMathML (XMLInputStream& stream, const std::string& reqd_prefix)
2023-09-08T16:15:24,580         |             ~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:15:24,581   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T16:15:24,582   ./base/sbml/math/MathML.cpp:116:31: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:15:24,582     116 |   if (node == NULL || &stream == NULL) return;
2023-09-08T16:15:24,583         |                               ^
2023-09-08T16:15:24,584   ./base/sbml/math/MathML.cpp:114:52: note: ‘stream’ declared here
2023-09-08T16:15:24,584     114 | writeMathML (const ASTNode* node, XMLOutputStream& stream, SBMLNamespaces *sbmlns)
2023-09-08T16:15:24,585         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:15:25,016   ./base/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, const std::string&)’:
2023-09-08T16:15:25,017   ./base/sbml/math/MathML.cpp:90:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:15:25,018      90 |   if (&stream == NULL) return NULL;
2023-09-08T16:15:25,018         |   ^~
2023-09-08T16:15:25,019   ./base/sbml/math/MathML.cpp: In function ‘void writeMathML(const ASTNode*, XMLOutputStream&, SBMLNamespaces*)’:
2023-09-08T16:15:25,019   ./base/sbml/math/MathML.cpp:116:31: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:15:25,020     116 |   if (node == NULL || &stream == NULL) return;
2023-09-08T16:15:25,020         |                               ^
2023-09-08T16:15:28,735   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:15:28,735                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:15:28,736                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:15:28,736                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:15:28,737                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:15:28,738                    from ./base//sbml/extension/SBMLExtensionRegister.h:42,
2023-09-08T16:15:28,739                    from ./base/sbml/packages/comp/extension/CompExtension.cpp:27:
2023-09-08T16:15:28,739   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:15:28,740      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:15:28,741         |                           ^~~~~~~~~~~~~~
2023-09-08T16:15:28,742   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:15:28,742                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:15:28,743                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:15:28,744                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:15:28,744   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:15:28,745     117 |     struct unary_function
2023-09-08T16:15:28,746         |            ^~~~~~~~~~~~~~
2023-09-08T16:15:34,402   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:15:34,403                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:15:34,404                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:15:34,404                    from ./base//sbml/extension/SBasePlugin.h:253,
2023-09-08T16:15:34,405                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2023-09-08T16:15:34,406                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:35:
2023-09-08T16:15:34,406   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:15:34,407      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:15:34,408         |                           ^~~~~~~~~~~~~~
2023-09-08T16:15:34,409   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:15:34,409                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:15:34,410                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:15:34,410                    from /usr/include/c++/12/ios:42,
2023-09-08T16:15:34,411                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:15:34,411                    from ./base/sbml/packages/comp/extension/CompModelPlugin.cpp:28:
2023-09-08T16:15:34,412   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:15:34,412     117 |     struct unary_function
2023-09-08T16:15:34,413         |            ^~~~~~~~~~~~~~
2023-09-08T16:15:46,719   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:15:46,720                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:15:46,721                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:15:46,721                    from ./base//sbml/extension/SBasePlugin.h:253,
2023-09-08T16:15:46,722                    from ./base//sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:67,
2023-09-08T16:15:46,722                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:34:
2023-09-08T16:15:46,723   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:15:46,723      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:15:46,724         |                           ^~~~~~~~~~~~~~
2023-09-08T16:15:46,725   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:15:46,725                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:15:46,726                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:15:46,726                    from /usr/include/c++/12/ios:42,
2023-09-08T16:15:46,727                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:15:46,728                    from ./base/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:28:
2023-09-08T16:15:46,729   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:15:46,729     117 |     struct unary_function
2023-09-08T16:15:46,730         |            ^~~~~~~~~~~~~~
2023-09-08T16:15:54,686   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:15:54,686                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:15:54,687                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:15:54,687                    from ./base//sbml/extension/SBasePlugin.h:253,
2023-09-08T16:15:54,688                    from ./base//sbml/packages/comp/extension/CompSBasePlugin.h:64,
2023-09-08T16:15:54,689                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:32:
2023-09-08T16:15:54,689   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:15:54,690      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:15:54,691         |                           ^~~~~~~~~~~~~~
2023-09-08T16:15:54,691   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:15:54,692                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:15:54,692                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:15:54,693                    from /usr/include/c++/12/ios:42,
2023-09-08T16:15:54,694                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:15:54,694                    from ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:28:
2023-09-08T16:15:54,695   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:15:54,696     117 |     struct unary_function
2023-09-08T16:15:54,696         |            ^~~~~~~~~~~~~~
2023-09-08T16:15:55,121   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::logInvalidId(const std::string&, const std::string&)’:
2023-09-08T16:15:55,122   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T16:15:55,122     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T16:15:55,123         |                  ^
2023-09-08T16:15:55,123   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:450:50: note: ‘attribute’ declared here
2023-09-08T16:15:55,124     450 | CompSBasePlugin::logInvalidId(const std::string& attribute,
2023-09-08T16:15:55,124         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:15:55,125   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T16:15:55,125     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T16:15:55,126         |                                             ^
2023-09-08T16:15:55,126   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:451:50: note: ‘wrongattribute’ declared here
2023-09-08T16:15:55,127     451 |                               const std::string& wrongattribute)
2023-09-08T16:15:55,127         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T16:15:55,700   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:15:55,700     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T16:15:55,701         |                  ^
2023-09-08T16:15:55,702   ./base/sbml/packages/comp/extension/CompSBasePlugin.cpp:454:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:15:55,702     454 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T16:15:55,703         |                                             ^
2023-09-08T16:16:00,550   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:00,550                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:00,551                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:00,552                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:00,552                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:00,553                    from ./base//sbml/packages/comp/sbml/CompBase.h:42,
2023-09-08T16:16:00,554                    from ./base/sbml/packages/comp/sbml/CompBase.cpp:28:
2023-09-08T16:16:00,555   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:00,555      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:00,556         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:00,557   In file included from /usr/include/c++/12/bits/stl_tree.h:65,
2023-09-08T16:16:00,557                    from /usr/include/c++/12/set:60,
2023-09-08T16:16:00,558                    from ./base//sbml/packages/comp/sbml/CompBase.h:39:
2023-09-08T16:16:00,558   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:00,559     117 |     struct unary_function
2023-09-08T16:16:00,560         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:01,031   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T16:16:01,031   ./base/sbml/packages/comp/sbml/CompBase.cpp:160:19: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T16:16:01,032     160 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:16:01,033         |                   ^
2023-09-08T16:16:01,034   ./base/sbml/packages/comp/sbml/CompBase.cpp:156:48: note: ‘attributes’ declared here
2023-09-08T16:16:01,034     156 | CompBase::readAttributes (const XMLAttributes& attributes,
2023-09-08T16:16:01,035         |                           ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T16:16:01,035   ./base/sbml/packages/comp/sbml/CompBase.cpp:160:50: warning: the compiler can assume that the address of ‘expectedAttributes’ will never be NULL [-Waddress]
2023-09-08T16:16:01,036     160 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:16:01,036         |                                                  ^
2023-09-08T16:16:01,037   ./base/sbml/packages/comp/sbml/CompBase.cpp:157:53: note: ‘expectedAttributes’ declared here
2023-09-08T16:16:01,037     157 |                           const ExpectedAttributes& expectedAttributes)
2023-09-08T16:16:01,038         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T16:16:01,038   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T16:16:01,039   ./base/sbml/packages/comp/sbml/CompBase.cpp:205:15: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:16:01,039     205 |   if(&element == NULL) return;
2023-09-08T16:16:01,040         |               ^
2023-09-08T16:16:01,041   ./base/sbml/packages/comp/sbml/CompBase.cpp:203:48: note: ‘element’ declared here
2023-09-08T16:16:01,041     203 | CompBase::logUnknownElement(const std::string &element)
2023-09-08T16:16:01,042         |                             ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:16:01,045   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T16:16:01,046   ./base/sbml/packages/comp/sbml/CompBase.cpp:231:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T16:16:01,047     231 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,047         |                  ^
2023-09-08T16:16:01,048   ./base/sbml/packages/comp/sbml/CompBase.cpp:228:50: note: ‘attribute’ declared here
2023-09-08T16:16:01,049     228 | CompBase::logUnknownAttribute(const std::string &attribute,
2023-09-08T16:16:01,050         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:16:01,050   ./base/sbml/packages/comp/sbml/CompBase.cpp:231:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:16:01,051     231 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,052         |                                      ^
2023-09-08T16:16:01,053   ./base/sbml/packages/comp/sbml/CompBase.cpp:229:50: note: ‘element’ declared here
2023-09-08T16:16:01,053     229 |                               const std::string& element)
2023-09-08T16:16:01,054         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:16:01,056   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T16:16:01,056   ./base/sbml/packages/comp/sbml/CompBase.cpp:267:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T16:16:01,057     267 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,058         |                  ^
2023-09-08T16:16:01,058   ./base/sbml/packages/comp/sbml/CompBase.cpp:263:45: note: ‘attribute’ declared here
2023-09-08T16:16:01,059     263 | CompBase::logEmptyString(const std::string &attribute,
2023-09-08T16:16:01,060         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:16:01,061   ./base/sbml/packages/comp/sbml/CompBase.cpp:267:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:16:01,062     267 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,062         |                                      ^
2023-09-08T16:16:01,063   ./base/sbml/packages/comp/sbml/CompBase.cpp:264:45: note: ‘element’ declared here
2023-09-08T16:16:01,063     264 |                          const std::string& element)
2023-09-08T16:16:01,064         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:16:01,064   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T16:16:01,065   ./base/sbml/packages/comp/sbml/CompBase.cpp:291:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T16:16:01,065     291 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T16:16:01,066         |                  ^
2023-09-08T16:16:01,066   ./base/sbml/packages/comp/sbml/CompBase.cpp:286:43: note: ‘attribute’ declared here
2023-09-08T16:16:01,067     286 | CompBase::logInvalidId(const std::string& attribute,
2023-09-08T16:16:01,068         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:16:01,068   ./base/sbml/packages/comp/sbml/CompBase.cpp:291:45: warning: the compiler can assume that the address of ‘wrongattribute’ will never be NULL [-Waddress]
2023-09-08T16:16:01,069     291 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T16:16:01,069         |                                             ^
2023-09-08T16:16:01,070   ./base/sbml/packages/comp/sbml/CompBase.cpp:287:43: note: ‘wrongattribute’ declared here
2023-09-08T16:16:01,071     287 |                        const std::string& wrongattribute,
2023-09-08T16:16:01,071         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T16:16:01,086   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T16:16:01,087   ./base/sbml/packages/comp/sbml/CompBase.cpp:389:18: warning: the compiler can assume that the address of ‘attribute’ will never be NULL [-Waddress]
2023-09-08T16:16:01,088     389 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,088         |                  ^
2023-09-08T16:16:01,089   ./base/sbml/packages/comp/sbml/CompBase.cpp:385:50: note: ‘attribute’ declared here
2023-09-08T16:16:01,090     385 | CompBase::logMissingAttribute(const std::string& attribute,
2023-09-08T16:16:01,091         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:16:01,091   ./base/sbml/packages/comp/sbml/CompBase.cpp:389:38: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:16:01,092     389 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,093         |                                      ^
2023-09-08T16:16:01,093   ./base/sbml/packages/comp/sbml/CompBase.cpp:386:50: note: ‘element’ declared here
2023-09-08T16:16:01,094     386 |                               const std::string& element)
2023-09-08T16:16:01,095         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:16:01,791   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownElement(const std::string&)’:
2023-09-08T16:16:01,792   ./base/sbml/packages/comp/sbml/CompBase.cpp:205:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,792     205 |   if(&element == NULL) return;
2023-09-08T16:16:01,793         |   ^~
2023-09-08T16:16:01,793   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logUnknownAttribute(const std::string&, const std::string&)’:
2023-09-08T16:16:01,794   ./base/sbml/packages/comp/sbml/CompBase.cpp:231:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,795     231 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,796         |                  ^
2023-09-08T16:16:01,796   ./base/sbml/packages/comp/sbml/CompBase.cpp:231:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,797     231 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,797         |                                      ^
2023-09-08T16:16:01,797   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logEmptyString(const std::string&, const std::string&)’:
2023-09-08T16:16:01,798   ./base/sbml/packages/comp/sbml/CompBase.cpp:267:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,798     267 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,799         |                  ^
2023-09-08T16:16:01,799   ./base/sbml/packages/comp/sbml/CompBase.cpp:267:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,800     267 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,801         |                                      ^
2023-09-08T16:16:01,801   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logInvalidId(const std::string&, const std::string&, const std::string&)’:
2023-09-08T16:16:01,802   ./base/sbml/packages/comp/sbml/CompBase.cpp:291:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,802     291 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T16:16:01,803         |                  ^
2023-09-08T16:16:01,803   ./base/sbml/packages/comp/sbml/CompBase.cpp:291:45: warning: ‘nonnull’ argument ‘wrongattribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,804     291 |   if (&attribute == NULL || &wrongattribute == NULL) return;
2023-09-08T16:16:01,805         |                                             ^
2023-09-08T16:16:01,805   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::logMissingAttribute(const std::string&, const std::string&)’:
2023-09-08T16:16:01,806   ./base/sbml/packages/comp/sbml/CompBase.cpp:389:18: warning: ‘nonnull’ argument ‘attribute’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,807     389 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,808         |                  ^
2023-09-08T16:16:01,809   ./base/sbml/packages/comp/sbml/CompBase.cpp:389:38: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,809     389 |   if (&attribute == NULL || &element == NULL) return;
2023-09-08T16:16:01,810         |                                      ^
2023-09-08T16:16:01,811   ./base/sbml/packages/comp/sbml/CompBase.cpp: In member function ‘virtual void CompBase::readAttributes(const XMLAttributes&, const ExpectedAttributes&)’:
2023-09-08T16:16:01,811   ./base/sbml/packages/comp/sbml/CompBase.cpp:160:19: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,812     160 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:16:01,813         |                   ^
2023-09-08T16:16:01,813   ./base/sbml/packages/comp/sbml/CompBase.cpp:160:50: warning: ‘nonnull’ argument ‘expectedAttributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:01,814     160 |   if (&attributes == NULL || &expectedAttributes == NULL ) return;
2023-09-08T16:16:01,815         |                                                  ^
2023-09-08T16:16:07,621   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:07,621                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:07,622                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:07,623                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:07,624                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:07,624                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:07,624                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:35:
2023-09-08T16:16:07,625   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:07,625      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:07,626         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:07,626   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:07,627                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:07,628                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:07,628                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:07,629                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:07,629                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:07,630                    from ./base/sbml/packages/comp/sbml/Deletion.cpp:27:
2023-09-08T16:16:07,630   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:07,631     117 |     struct unary_function
2023-09-08T16:16:07,631         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:13,522   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:13,522                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:13,523                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:13,523                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:13,524                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:13,525                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:13,526                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36:
2023-09-08T16:16:13,526   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:13,527      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:13,528         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:13,528   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:13,529                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:13,530                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:13,531                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:13,531                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:13,532                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:13,532                    from ./base/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:27:
2023-09-08T16:16:13,533   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:13,534     117 |     struct unary_function
2023-09-08T16:16:13,534         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:22,953   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:22,954                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:22,954                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:22,955                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:22,956                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:22,956                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:22,957                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:36:
2023-09-08T16:16:22,958   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:22,959      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:22,959         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:22,960   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:22,960                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:22,961                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:22,961                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:22,962                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:22,962                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:22,963                    from ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:27:
2023-09-08T16:16:22,963   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:22,964     117 |     struct unary_function
2023-09-08T16:16:22,964         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:23,350   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual Deletion* ListOfDeletions::remove(const std::string&)’:
2023-09-08T16:16:23,351   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:16:23,352     118 |   if (&(sid) != NULL)
2023-09-08T16:16:23,352         |              ^
2023-09-08T16:16:23,353   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:113:45: note: ‘sid’ declared here
2023-09-08T16:16:23,353     113 | ListOfDeletions::remove (const std::string& sid)
2023-09-08T16:16:23,354         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:16:23,909   ./base/sbml/packages/comp/sbml/ListOfDeletions.cpp:118:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:23,910     118 |   if (&(sid) != NULL)
2023-09-08T16:16:23,911         |   ^~
2023-09-08T16:16:27,947   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:27,948                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:27,949                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:27,949                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:27,950                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:27,951                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:27,952                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36:
2023-09-08T16:16:27,952   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:27,953      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:27,954         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:27,954   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:27,955                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:27,956                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:27,956                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:27,957                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:27,957                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:27,958                    from ./base/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:27:
2023-09-08T16:16:27,959   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:27,959     117 |     struct unary_function
2023-09-08T16:16:27,960         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:32,985   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:32,985                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:32,986                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:32,987                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:32,987                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:32,988                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:32,988                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36:
2023-09-08T16:16:32,989   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:32,990      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:32,990         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:32,991   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:32,991                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:32,992                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:32,992                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:32,993                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:32,993                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:32,994                    from ./base/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:27:
2023-09-08T16:16:32,994   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:32,995     117 |     struct unary_function
2023-09-08T16:16:32,995         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:37,957   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:37,958                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:37,958                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:37,959                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:37,960                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:37,961                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:37,961                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:36:
2023-09-08T16:16:37,962   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:37,963      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:37,963         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:37,964   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:37,965                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:37,966                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:37,966                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:37,967                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:37,967                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:37,968                    from ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:27:
2023-09-08T16:16:37,969   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:37,969     117 |     struct unary_function
2023-09-08T16:16:37,970         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:38,353   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual Port* ListOfPorts::remove(const std::string&)’:
2023-09-08T16:16:38,354   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:16:38,355     113 |   if (&(sid) != NULL)
2023-09-08T16:16:38,356         |              ^
2023-09-08T16:16:38,356   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:108:41: note: ‘sid’ declared here
2023-09-08T16:16:38,357     108 | ListOfPorts::remove (const std::string& sid)
2023-09-08T16:16:38,358         |                      ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:16:38,907   ./base/sbml/packages/comp/sbml/ListOfPorts.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:38,908     113 |   if (&(sid) != NULL)
2023-09-08T16:16:38,908         |   ^~
2023-09-08T16:16:42,882   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:42,882                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:42,883                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:42,883                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:42,884                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:42,884                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:42,885                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36:
2023-09-08T16:16:42,885   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:42,886      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:42,886         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:42,887   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:42,887                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:42,888                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:42,888                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:42,889                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:42,889                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:42,890                    from ./base/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:27:
2023-09-08T16:16:42,891   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:42,891     117 |     struct unary_function
2023-09-08T16:16:42,892         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:47,516   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:47,517                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:47,521                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:47,522                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:47,522                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:47,523                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:47,524                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36:
2023-09-08T16:16:47,525   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:47,525      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:47,526         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:47,526   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:47,527                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:47,528                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:47,528                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:47,529                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:47,529                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:47,530                    from ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:27:
2023-09-08T16:16:47,531   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:47,531     117 |     struct unary_function
2023-09-08T16:16:47,532         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:47,926   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual Submodel* ListOfSubmodels::remove(const std::string&)’:
2023-09-08T16:16:47,926   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:14: warning: the compiler can assume that the address of ‘sid’ will never be NULL [-Waddress]
2023-09-08T16:16:47,927     113 |   if (&(sid) != NULL)
2023-09-08T16:16:47,928         |              ^
2023-09-08T16:16:47,928   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:108:45: note: ‘sid’ declared here
2023-09-08T16:16:47,929     108 | ListOfSubmodels::remove (const std::string& sid)
2023-09-08T16:16:47,929         |                          ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:16:48,487   ./base/sbml/packages/comp/sbml/ListOfSubmodels.cpp:113:3: warning: ‘nonnull’ argument ‘sid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:16:48,488     113 |   if (&(sid) != NULL)
2023-09-08T16:16:48,488         |   ^~
2023-09-08T16:16:52,516   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:52,516                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:52,517                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:52,517                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:52,518                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:52,518                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:52,519                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:36:
2023-09-08T16:16:52,519   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:52,520      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:52,521         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:52,522   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:52,522                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:52,523                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:52,524                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:52,524                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:52,525                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:52,526                    from ./base/sbml/packages/comp/sbml/ModelDefinition.cpp:27:
2023-09-08T16:16:52,526   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:52,527     117 |     struct unary_function
2023-09-08T16:16:52,528         |            ^~~~~~~~~~~~~~
2023-09-08T16:16:57,291   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:16:57,292                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:16:57,292                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:16:57,293                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:16:57,294                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:16:57,294                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:16:57,295                    from ./base/sbml/packages/comp/sbml/Port.cpp:36:
2023-09-08T16:16:57,295   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:16:57,296      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:16:57,297         |                           ^~~~~~~~~~~~~~
2023-09-08T16:16:57,297   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:16:57,298                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:16:57,299                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:16:57,299                    from /usr/include/c++/12/ios:42,
2023-09-08T16:16:57,300                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:16:57,301                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:16:57,302                    from ./base/sbml/packages/comp/sbml/Port.cpp:27:
2023-09-08T16:16:57,302   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:16:57,303     117 |     struct unary_function
2023-09-08T16:16:57,303         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:02,891   In file included from ./base//sbml/packages/comp/sbml/ReplacedBy.h:55,
2023-09-08T16:17:02,892                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:36:
2023-09-08T16:17:02,892   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:17:02,893      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:17:02,893         |                           ^~~~~~~~~~~~~~
2023-09-08T16:17:02,894   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:17:02,895                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:17:02,895                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:17:02,896                    from /usr/include/c++/12/ios:42,
2023-09-08T16:17:02,896                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:17:02,897                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:17:02,897                    from ./base/sbml/packages/comp/sbml/ReplacedBy.cpp:27:
2023-09-08T16:17:02,898   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:17:02,898     117 |     struct unary_function
2023-09-08T16:17:02,899         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:08,145   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:17:08,145                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:17:08,146                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:17:08,147                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:17:08,147                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:17:08,148                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:17:08,149                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:36:
2023-09-08T16:17:08,150   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:17:08,150      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:17:08,151         |                           ^~~~~~~~~~~~~~
2023-09-08T16:17:08,152   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:17:08,152                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:17:08,153                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:17:08,154                    from /usr/include/c++/12/ios:42,
2023-09-08T16:17:08,154                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:17:08,155                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:17:08,155                    from ./base/sbml/packages/comp/sbml/ReplacedElement.cpp:27:
2023-09-08T16:17:08,156   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:17:08,157     117 |     struct unary_function
2023-09-08T16:17:08,157         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:15,413   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:17:15,414                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:17:15,415                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:17:15,415                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:17:15,416                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:17:15,417                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:17:15,418                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:36:
2023-09-08T16:17:15,419   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:17:15,419      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:17:15,420         |                           ^~~~~~~~~~~~~~
2023-09-08T16:17:15,420   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:17:15,421                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:17:15,421                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:17:15,422                    from /usr/include/c++/12/ios:42,
2023-09-08T16:17:15,422                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:17:15,423                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:17:15,423                    from ./base/sbml/packages/comp/sbml/Replacing.cpp:27:
2023-09-08T16:17:15,424   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:17:15,424     117 |     struct unary_function
2023-09-08T16:17:15,425         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:22,686   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:17:22,686                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:17:22,687                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:17:22,687                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:17:22,688                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:17:22,689                    from ./base//sbml/packages/comp/extension/CompExtension.h:41,
2023-09-08T16:17:22,689                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:36:
2023-09-08T16:17:22,690   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:17:22,691      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:17:22,691         |                           ^~~~~~~~~~~~~~
2023-09-08T16:17:22,692   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:17:22,693                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:17:22,694                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:17:22,694                    from /usr/include/c++/12/ios:42,
2023-09-08T16:17:22,695                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:17:22,696                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:17:22,697                    from ./base/sbml/packages/comp/sbml/SBaseRef.cpp:27:
2023-09-08T16:17:22,697   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:17:22,698     117 |     struct unary_function
2023-09-08T16:17:22,699         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:31,672   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:17:31,672                    from ./base//sbml/RateRule.h:113,
2023-09-08T16:17:31,673                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:31:
2023-09-08T16:17:31,674   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:17:31,674      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:17:31,675         |                           ^~~~~~~~~~~~~~
2023-09-08T16:17:31,676   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:17:31,676                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:17:31,677                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:17:31,678                    from /usr/include/c++/12/ios:42,
2023-09-08T16:17:31,678                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:17:31,679                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:17:31,680                    from ./base/sbml/packages/comp/sbml/Submodel.cpp:27:
2023-09-08T16:17:31,681   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:17:31,681     117 |     struct unary_function
2023-09-08T16:17:31,682         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:44,893   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:17:44,894                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:17:44,895                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:17:44,895                    from ./base//sbml/extension/SBasePlugin.h:253,
2023-09-08T16:17:44,895                    from ./base//sbml/packages/comp/extension/CompModelPlugin.h:62,
2023-09-08T16:17:44,896                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:151,
2023-09-08T16:17:44,896                    from ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:29:
2023-09-08T16:17:44,897   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:17:44,897      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:17:44,898         |                           ^~~~~~~~~~~~~~
2023-09-08T16:17:44,899   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:17:44,899                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:17:44,900                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:17:44,900                    from ./base//sbml/packages/comp/util/CompFlatteningConverter.h:150:
2023-09-08T16:17:44,901   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:17:44,901     117 |     struct unary_function
2023-09-08T16:17:44,902         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:45,488   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp: In member function ‘virtual bool CompFlatteningConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:17:45,488   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:121:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:17:45,489     121 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T16:17:45,490         |              ^
2023-09-08T16:17:45,491   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:119:54: note: ‘props’ declared here
2023-09-08T16:17:45,491     119 |                         (const ConversionProperties &props) const
2023-09-08T16:17:45,492         |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:17:46,424   ./base/sbml/packages/comp/util/CompFlatteningConverter.cpp:121:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:17:46,425     121 |   if (&props == NULL || !props.hasOption("flatten comp"))
2023-09-08T16:17:46,425         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:17:53,886   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:17:53,886                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:17:53,887                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:17:53,888                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:29:
2023-09-08T16:17:53,888   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:17:53,889      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:17:53,890         |                           ^~~~~~~~~~~~~~
2023-09-08T16:17:53,890   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:17:53,891                    from ./base//sbml/packages/comp/util/SBMLFileResolver.h:57,
2023-09-08T16:17:53,892                    from ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:27:
2023-09-08T16:17:53,892   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:17:53,893     117 |     struct unary_function
2023-09-08T16:17:53,894         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:54,273   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T16:17:54,273   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:17:54,274      54 |   if (&orig == NULL)
2023-09-08T16:17:54,274         |             ^
2023-09-08T16:17:54,275   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:52:60: note: ‘orig’ declared here
2023-09-08T16:17:54,276      52 | SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver& orig)
2023-09-08T16:17:54,276         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:17:54,277   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In member function ‘SBMLFileResolver& SBMLFileResolver::operator=(const SBMLFileResolver&)’:
2023-09-08T16:17:54,277   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:17:54,278      80 |   if (&rhs == NULL)
2023-09-08T16:17:54,279         |            ^
2023-09-08T16:17:54,279   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:78:53: note: ‘rhs’ declared here
2023-09-08T16:17:54,280      78 | SBMLFileResolver::operator=(const SBMLFileResolver& rhs)
2023-09-08T16:17:54,280         |                             ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:17:54,827   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:80:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:17:54,828      80 |   if (&rhs == NULL)
2023-09-08T16:17:54,828         |   ^~
2023-09-08T16:17:54,837   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp: In copy constructor ‘SBMLFileResolver::SBMLFileResolver(const SBMLFileResolver&)’:
2023-09-08T16:17:54,838   ./base/sbml/packages/comp/util/SBMLFileResolver.cpp:54:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:17:54,839      54 |   if (&orig == NULL)
2023-09-08T16:17:54,840         |   ^~
2023-09-08T16:17:59,077   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:17:59,078                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:17:59,079                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:17:59,079                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:29:
2023-09-08T16:17:59,080   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:17:59,081      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:17:59,081         |                           ^~~~~~~~~~~~~~
2023-09-08T16:17:59,082   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:17:59,083                    from ./base//sbml/packages/comp/util/SBMLResolver.h:62,
2023-09-08T16:17:59,083                    from ./base/sbml/packages/comp/util/SBMLResolver.cpp:27:
2023-09-08T16:17:59,084   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:17:59,085     117 |     struct unary_function
2023-09-08T16:17:59,085         |            ^~~~~~~~~~~~~~
2023-09-08T16:17:59,369   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T16:17:59,369   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:17:59,370      50 |   if (&orig == NULL)
2023-09-08T16:17:59,371         |             ^
2023-09-08T16:17:59,372   ./base/sbml/packages/comp/util/SBMLResolver.cpp:48:48: note: ‘orig’ declared here
2023-09-08T16:17:59,373      48 | SBMLResolver::SBMLResolver(const SBMLResolver& orig)
2023-09-08T16:17:59,374         |                            ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:17:59,374   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T16:17:59,375   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:17:59,375      76 |   if (&rhs == NULL)
2023-09-08T16:17:59,376         |            ^
2023-09-08T16:17:59,376   ./base/sbml/packages/comp/util/SBMLResolver.cpp:74:45: note: ‘rhs’ declared here
2023-09-08T16:17:59,377      74 | SBMLResolver::operator=(const SBMLResolver& rhs)
2023-09-08T16:17:59,378         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:17:59,841   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In copy constructor ‘SBMLResolver::SBMLResolver(const SBMLResolver&)’:
2023-09-08T16:17:59,842   ./base/sbml/packages/comp/util/SBMLResolver.cpp:50:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:17:59,842      50 |   if (&orig == NULL)
2023-09-08T16:17:59,843         |   ^~
2023-09-08T16:17:59,843   ./base/sbml/packages/comp/util/SBMLResolver.cpp: In member function ‘SBMLResolver& SBMLResolver::operator=(const SBMLResolver&)’:
2023-09-08T16:17:59,844   ./base/sbml/packages/comp/util/SBMLResolver.cpp:76:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:17:59,844      76 |   if (&rhs == NULL)
2023-09-08T16:17:59,845         |   ^~
2023-09-08T16:18:03,087   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:18:03,088                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:18:03,088                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:18:03,089                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:34:
2023-09-08T16:18:03,090   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:03,091      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:03,091         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:03,092   In file included from /usr/include/c++/12/bits/refwrap.h:39,
2023-09-08T16:18:03,093                    from /usr/include/c++/12/vector:66,
2023-09-08T16:18:03,094                    from ./base/sbml/packages/comp/util/SBMLResolverRegistry.cpp:30:
2023-09-08T16:18:03,094   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:03,095     117 |     struct unary_function
2023-09-08T16:18:03,096         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:07,382   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:18:07,383                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:18:07,384                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:18:07,384                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:28:
2023-09-08T16:18:07,385   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:07,386      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:07,386         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:07,387   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:18:07,388                    from ./base//sbml/packages/comp/util/SBMLUri.h:45,
2023-09-08T16:18:07,388                    from ./base/sbml/packages/comp/util/SBMLUri.cpp:27:
2023-09-08T16:18:07,389   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:07,390     117 |     struct unary_function
2023-09-08T16:18:07,390         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:07,678   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T16:18:07,679   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:18:07,679      53 |   if (&orig == NULL)
2023-09-08T16:18:07,680         |             ^
2023-09-08T16:18:07,680   ./base/sbml/packages/comp/util/SBMLUri.cpp:51:33: note: ‘orig’ declared here
2023-09-08T16:18:07,681      51 | SBMLUri::SBMLUri(const SBMLUri& orig)
2023-09-08T16:18:07,682         |                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:18:07,682   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T16:18:07,683   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:18:07,683      83 |   if (&rhs == NULL)
2023-09-08T16:18:07,684         |            ^
2023-09-08T16:18:07,684   ./base/sbml/packages/comp/util/SBMLUri.cpp:81:35: note: ‘rhs’ declared here
2023-09-08T16:18:07,685      81 | SBMLUri::operator=(const SBMLUri& rhs)
2023-09-08T16:18:07,685         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T16:18:07,696   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’:
2023-09-08T16:18:07,697   ./base/sbml/packages/comp/util/SBMLUri.cpp:157:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T16:18:07,697     157 |     ptr_fun<int,int>(tolower)); // scheme is icase
2023-09-08T16:18:07,698         |     ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:18:07,699   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T16:18:07,700    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T16:18:07,700         |     ^~~~~~~
2023-09-08T16:18:07,704   ./base/sbml/packages/comp/util/SBMLUri.cpp:181:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations]
2023-09-08T16:18:07,705     181 |      ptr_fun<int,int>(tolower)); // host is icase
2023-09-08T16:18:07,706         |      ~~~~~~~~~~~~~~~~^~~~~~~~~
2023-09-08T16:18:07,707   /usr/include/c++/12/bits/stl_function.h:1126:5: note: declared here
2023-09-08T16:18:07,707    1126 |     ptr_fun(_Result (*__x)(_Arg))
2023-09-08T16:18:07,708         |     ^~~~~~~
2023-09-08T16:18:08,257   ./base/sbml/packages/comp/util/SBMLUri.cpp: In copy constructor ‘SBMLUri::SBMLUri(const SBMLUri&)’:
2023-09-08T16:18:08,258   ./base/sbml/packages/comp/util/SBMLUri.cpp:53:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:18:08,259      53 |   if (&orig == NULL)
2023-09-08T16:18:08,259         |   ^~
2023-09-08T16:18:08,260   ./base/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘SBMLUri& SBMLUri::operator=(const SBMLUri&)’:
2023-09-08T16:18:08,260   ./base/sbml/packages/comp/util/SBMLUri.cpp:83:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:18:08,261      83 |   if (&rhs == NULL)
2023-09-08T16:18:08,262         |   ^~
2023-09-08T16:18:12,722   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:18:12,722                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:18:12,723                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:18:12,724                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30,
2023-09-08T16:18:12,724                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:36:
2023-09-08T16:18:12,725   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:12,726      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:12,727         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:12,727   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:18:12,728                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T16:18:12,728                    from ./base//sbml/packages/comp/validator/CompConsistencyValidator.h:36,
2023-09-08T16:18:12,729                    from ./base/sbml/packages/comp/validator/CompConsistencyValidator.cpp:30:
2023-09-08T16:18:12,729   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:12,730     117 |     struct unary_function
2023-09-08T16:18:12,730         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:29,814   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:18:29,814                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:18:29,815                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:18:29,815                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30,
2023-09-08T16:18:29,816                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:36:
2023-09-08T16:18:29,816   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:29,817      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:29,818         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:29,818   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:18:29,819                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T16:18:29,819                    from ./base//sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:36,
2023-09-08T16:18:29,820                    from ./base/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:30:
2023-09-08T16:18:29,821   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:29,822     117 |     struct unary_function
2023-09-08T16:18:29,822         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:34,085   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:18:34,086                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:18:34,087                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:18:34,088                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30,
2023-09-08T16:18:34,088                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:36:
2023-09-08T16:18:34,089   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:34,090      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:34,090         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:34,091   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:18:34,092                    from ./base//sbml/packages/comp/validator/CompValidator.h:62,
2023-09-08T16:18:34,092                    from ./base//sbml/packages/comp/validator/CompUnitConsistencyValidator.h:36,
2023-09-08T16:18:34,093                    from ./base/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:30:
2023-09-08T16:18:34,094   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:34,094     117 |     struct unary_function
2023-09-08T16:18:34,095         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:38,382   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:18:38,382                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:18:38,383                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:18:38,384                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:32:
2023-09-08T16:18:38,385   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:38,385      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:38,386         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:38,386   In file included from /usr/include/c++/12/functional:49,
2023-09-08T16:18:38,387                    from ./base/sbml/packages/comp/validator/CompValidator.cpp:27:
2023-09-08T16:18:38,387   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:38,388     117 |     struct unary_function
2023-09-08T16:18:38,388         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:39,226   ./base/sbml/packages/comp/validator/CompValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:39,226      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T16:18:39,227         |                       ^~~~~~~~~~~~~~
2023-09-08T16:18:39,227   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:39,228     117 |     struct unary_function
2023-09-08T16:18:39,228         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:39,441   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T16:18:39,441   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T16:18:39,442     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T16:18:39,443         |            ^
2023-09-08T16:18:39,444   ./base/sbml/packages/comp/validator/CompValidator.cpp:325:36: note: ‘x’ declared here
2023-09-08T16:18:39,444     325 |   virtual bool visit (const SBase &x)
2023-09-08T16:18:39,445         |                       ~~~~~~~~~~~~~^
2023-09-08T16:18:39,465   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T16:18:39,466   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T16:18:39,466     481 |   if (&d == NULL) return 0;
2023-09-08T16:18:39,467         |          ^
2023-09-08T16:18:39,468   ./base/sbml/packages/comp/validator/CompValidator.cpp:479:46: note: ‘d’ declared here
2023-09-08T16:18:39,469     479 | CompValidator::validate (const SBMLDocument& d)
2023-09-08T16:18:39,470         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T16:18:39,483   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T16:18:39,484   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T16:18:39,484     610 |   if (&filename == NULL) return 0;
2023-09-08T16:18:39,485         |                 ^
2023-09-08T16:18:39,486   ./base/sbml/packages/comp/validator/CompValidator.cpp:608:45: note: ‘filename’ declared here
2023-09-08T16:18:39,487     608 | CompValidator::validate (const std::string& filename)
2023-09-08T16:18:39,487         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:18:40,437   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual bool CompValidatingVisitor::visit(const SBase&)’:
2023-09-08T16:18:40,437   ./base/sbml/packages/comp/validator/CompValidator.cpp:327:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:18:40,438     327 |     if (&x == NULL || x.getPackageName() != "comp")
2023-09-08T16:18:40,439         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:18:40,458   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const SBMLDocument&)’:
2023-09-08T16:18:40,459   ./base/sbml/packages/comp/validator/CompValidator.cpp:481:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:18:40,460     481 |   if (&d == NULL) return 0;
2023-09-08T16:18:40,460         |   ^~
2023-09-08T16:18:40,492   ./base/sbml/packages/comp/validator/CompValidator.cpp: In member function ‘virtual unsigned int CompValidator::validate(const std::string&)’:
2023-09-08T16:18:40,493   ./base/sbml/packages/comp/validator/CompValidator.cpp:610:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:18:40,494     610 |   if (&filename == NULL) return 0;
2023-09-08T16:18:40,494         |   ^~
2023-09-08T16:18:45,893   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:18:45,894                    from ./base//sbml/Model.h:446,
2023-09-08T16:18:45,894                    from ./base/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:28:
2023-09-08T16:18:45,894   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:45,895      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:45,895         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:45,896   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:18:45,897                    from ./base//sbml/Model.h:444:
2023-09-08T16:18:45,897   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:45,898     117 |     struct unary_function
2023-09-08T16:18:45,899         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:50,609   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:18:50,609                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:18:50,610                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:18:50,610                    from ./base/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:30:
2023-09-08T16:18:50,611   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:50,612      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:50,612         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:50,613   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:18:50,614                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:18:50,615   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:50,615     117 |     struct unary_function
2023-09-08T16:18:50,616         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:55,400   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:18:55,401                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:18:55,402                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:18:55,402                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T16:18:55,403                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.cpp:28:
2023-09-08T16:18:55,404   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:55,405      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:55,405         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:55,406   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:18:55,407                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:35:
2023-09-08T16:18:55,408   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:55,409     117 |     struct unary_function
2023-09-08T16:18:55,409         |            ^~~~~~~~~~~~~~
2023-09-08T16:18:59,960   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:18:59,960                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:18:59,961                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:18:59,962                    from ./base/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:30:
2023-09-08T16:18:59,962   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:18:59,963      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:18:59,963         |                           ^~~~~~~~~~~~~~
2023-09-08T16:18:59,964   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:18:59,964                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:18:59,965   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:18:59,965     117 |     struct unary_function
2023-09-08T16:18:59,966         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:04,148   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:19:04,149                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:19:04,149                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:19:04,150                    from ./base/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:30:
2023-09-08T16:19:04,150   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:04,151      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:04,152         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:04,153   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:04,154                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:19:04,154   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:04,155     117 |     struct unary_function
2023-09-08T16:19:04,156         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:08,560   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:08,561                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:08,562                    from ./base/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:30:
2023-09-08T16:19:08,562   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:08,563      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:08,564         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:08,565   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:08,565                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:08,566   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:08,567     117 |     struct unary_function
2023-09-08T16:19:08,567         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:16,473   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:16,474                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:16,474                    from ./base/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:28:
2023-09-08T16:19:16,475   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:16,476      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:16,477         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:16,478   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:16,478                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:16,478   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:16,479     117 |     struct unary_function
2023-09-08T16:19:16,479         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:21,331   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:21,331                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:21,332                    from ./base/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:30:
2023-09-08T16:19:21,333   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:21,333      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:21,334         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:21,334   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:21,335                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:21,336   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:21,336     117 |     struct unary_function
2023-09-08T16:19:21,337         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:29,324   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:19:29,325                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:19:29,325                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:19:29,326                    from ./base/sbml/packages/comp/validator/constraints/CompIdBase.h:36,
2023-09-08T16:19:29,327                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:39,
2023-09-08T16:19:29,327                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:30:
2023-09-08T16:19:29,328   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:29,329      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:29,329         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:29,330   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:29,331                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:19:29,331                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:19:29,332                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:19:29,333                    from ./base//sbml/SBase.h:145,
2023-09-08T16:19:29,333                    from ./base/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:28:
2023-09-08T16:19:29,334   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:29,335     117 |     struct unary_function
2023-09-08T16:19:29,335         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:34,832   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:34,833                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:34,834                    from ./base/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:28:
2023-09-08T16:19:34,835   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:34,835      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:34,836         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:34,837   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:34,838                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:34,838   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:34,839     117 |     struct unary_function
2023-09-08T16:19:34,840         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:39,291   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:39,292                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:39,292                    from ./base/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:28:
2023-09-08T16:19:39,292   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:39,293      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:39,293         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:39,294   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:39,294                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:39,295   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:39,295     117 |     struct unary_function
2023-09-08T16:19:39,296         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:43,676   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:43,676                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:43,677                    from ./base/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:28:
2023-09-08T16:19:43,678   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:43,678      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:43,679         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:43,679   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:43,680                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:43,681   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:43,681     117 |     struct unary_function
2023-09-08T16:19:43,682         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:48,061   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:48,061                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:48,062                    from ./base/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:28:
2023-09-08T16:19:48,063   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:48,063      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:48,064         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:48,065   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:48,066                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:48,066   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:48,067     117 |     struct unary_function
2023-09-08T16:19:48,068         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:52,591   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:52,592                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:52,592                    from ./base/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:28:
2023-09-08T16:19:52,593   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:52,594      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:52,594         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:52,595   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:52,596                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:52,596   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:52,597     117 |     struct unary_function
2023-09-08T16:19:52,598         |            ^~~~~~~~~~~~~~
2023-09-08T16:19:57,318   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:19:57,319                    from ./base//sbml/Model.h:446,
2023-09-08T16:19:57,320                    from ./base/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:28:
2023-09-08T16:19:57,321   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:19:57,321      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:19:57,322         |                           ^~~~~~~~~~~~~~
2023-09-08T16:19:57,322   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:19:57,323                    from ./base//sbml/Model.h:444:
2023-09-08T16:19:57,324   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:19:57,324     117 |     struct unary_function
2023-09-08T16:19:57,325         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:02,974   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:20:02,975                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:20:02,975                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:20:02,976                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:20:02,976                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:20:02,977                    from ./base//sbml/extension/SBMLExtensionRegister.h:42,
2023-09-08T16:20:02,977                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:28:
2023-09-08T16:20:02,982   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:02,982      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:02,983         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:02,983   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:02,984                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:20:02,985                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:20:02,985                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:20:02,986   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:02,987     117 |     struct unary_function
2023-09-08T16:20:02,987         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:03,400   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:20:03,401                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T16:20:03,402                    from ./base/sbml/packages/fbc/extension/FbcExtension.cpp:37:
2023-09-08T16:20:03,403   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:03,403     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:03,404         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:20:03,405   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:03,405     117 |     struct unary_function
2023-09-08T16:20:03,406         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:03,413   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:03,414     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:03,415         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:20:03,415   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:03,416     117 |     struct unary_function
2023-09-08T16:20:03,417         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:03,435   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T16:20:03,435   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:03,436     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:03,437         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:20:03,438   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:03,438     117 |     struct unary_function
2023-09-08T16:20:03,438         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:08,390   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:20:08,390                    from ./base//sbml/Model.h:446,
2023-09-08T16:20:08,391                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:42,
2023-09-08T16:20:08,391                    from ./base/sbml/packages/fbc/extension/FbcModelPlugin.cpp:29:
2023-09-08T16:20:08,392   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:08,392      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:08,393         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:08,393   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:08,394                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:20:08,394                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:20:08,395                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:41:
2023-09-08T16:20:08,395   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:08,396     117 |     struct unary_function
2023-09-08T16:20:08,396         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:08,860   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:20:08,861                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47:
2023-09-08T16:20:08,861   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:08,862     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:08,863         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:20:08,864   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:08,864     117 |     struct unary_function
2023-09-08T16:20:08,865         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:08,872   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:08,873     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:08,874         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:20:08,874   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:08,875     117 |     struct unary_function
2023-09-08T16:20:08,875         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:08,894   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T16:20:08,894   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:08,895     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:08,896         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:20:08,897   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:08,897     117 |     struct unary_function
2023-09-08T16:20:08,898         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:14,885   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:20:14,886                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:20:14,886                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:20:14,887                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2023-09-08T16:20:14,888                    from ./base//sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:48,
2023-09-08T16:20:14,888                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:32:
2023-09-08T16:20:14,889   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:14,889      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:14,890         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:14,890   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:14,891                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:20:14,891                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:20:14,892                    from /usr/include/c++/12/ios:42,
2023-09-08T16:20:14,892                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:20:14,893                    from ./base/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:28:
2023-09-08T16:20:14,893   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:14,894     117 |     struct unary_function
2023-09-08T16:20:14,894         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:19,224   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:20:19,224                    from ./base//sbml/Model.h:446,
2023-09-08T16:20:19,225                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:44,
2023-09-08T16:20:19,226                    from ./base/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:31:
2023-09-08T16:20:19,226   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:19,227      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:19,228         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:19,228   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:19,229                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:20:19,230                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:20:19,231                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:43:
2023-09-08T16:20:19,231   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:19,232     117 |     struct unary_function
2023-09-08T16:20:19,233         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:19,692   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:20:19,693                    from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:49:
2023-09-08T16:20:19,693   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:19,694     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:19,695         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:20:19,695   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:19,696     117 |     struct unary_function
2023-09-08T16:20:19,697         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:19,702   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:19,702     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:19,703         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:20:19,704   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:19,704     117 |     struct unary_function
2023-09-08T16:20:19,705         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:19,722   In file included from ./base//sbml/packages/fbc/extension/FbcSpeciesPlugin.h:50:
2023-09-08T16:20:19,722   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:19,723     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:19,723         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:20:19,724   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:19,725     117 |     struct unary_function
2023-09-08T16:20:19,725         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:25,441   In file included from ./base//sbml/packages/fbc/sbml/Association.h:50,
2023-09-08T16:20:25,441                    from ./base/sbml/packages/fbc/sbml/Association.cpp:37:
2023-09-08T16:20:25,442   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:25,442      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:25,443         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:25,443   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:25,444                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:20:25,444                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:20:25,445                    from /usr/include/c++/12/ios:42,
2023-09-08T16:20:25,445                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:20:25,446                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:20:25,446                    from ./base/sbml/packages/fbc/sbml/Association.cpp:27:
2023-09-08T16:20:25,447   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:25,448     117 |     struct unary_function
2023-09-08T16:20:25,449         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:33,492   In file included from ./base//sbml/packages/fbc/sbml/FluxBound.h:69,
2023-09-08T16:20:33,493                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:36:
2023-09-08T16:20:33,493   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:33,494      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:33,495         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:33,496   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:33,496                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:20:33,497                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:20:33,498                    from /usr/include/c++/12/ios:42,
2023-09-08T16:20:33,498                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:20:33,499                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:20:33,500                    from ./base/sbml/packages/fbc/sbml/FluxBound.cpp:27:
2023-09-08T16:20:33,500   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:33,501     117 |     struct unary_function
2023-09-08T16:20:33,502         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:41,209   In file included from ./base//sbml/packages/fbc/sbml/FluxObjective.h:48,
2023-09-08T16:20:41,210                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:37:
2023-09-08T16:20:41,211   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:41,211      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:41,212         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:41,213   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:41,214                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:20:41,215                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:20:41,216                    from /usr/include/c++/12/ios:42,
2023-09-08T16:20:41,216                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:20:41,217                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:20:41,217                    from ./base/sbml/packages/fbc/sbml/FluxObjective.cpp:27:
2023-09-08T16:20:41,218   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:41,218     117 |     struct unary_function
2023-09-08T16:20:41,219         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:41,847   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:41,848     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:41,848         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:20:41,849   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:41,850     117 |     struct unary_function
2023-09-08T16:20:41,850         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:48,378   In file included from ./base//sbml/packages/fbc/sbml/GeneAssociation.h:46,
2023-09-08T16:20:48,378                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:37:
2023-09-08T16:20:48,379   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:48,380      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:48,380         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:48,381   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:48,382                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:20:48,383                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:20:48,383                    from /usr/include/c++/12/ios:42,
2023-09-08T16:20:48,384                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:20:48,385                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:20:48,386                    from ./base/sbml/packages/fbc/sbml/GeneAssociation.cpp:27:
2023-09-08T16:20:48,386   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:48,387     117 |     struct unary_function
2023-09-08T16:20:48,388         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:49,027   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:49,028     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:49,028         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:20:49,029   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:49,030     117 |     struct unary_function
2023-09-08T16:20:49,031         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:55,318   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:66,
2023-09-08T16:20:55,318                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:37:
2023-09-08T16:20:55,319   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:55,319      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:20:55,320         |                           ^~~~~~~~~~~~~~
2023-09-08T16:20:55,321   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:20:55,322                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:20:55,322                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:20:55,323                    from /usr/include/c++/12/ios:42,
2023-09-08T16:20:55,324                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:20:55,325                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:20:55,325                    from ./base/sbml/packages/fbc/sbml/Objective.cpp:27:
2023-09-08T16:20:55,326   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:55,326     117 |     struct unary_function
2023-09-08T16:20:55,327         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:55,957   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68:
2023-09-08T16:20:55,957   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:55,958     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:55,958         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:20:55,959   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:55,960     117 |     struct unary_function
2023-09-08T16:20:55,960         |            ^~~~~~~~~~~~~~
2023-09-08T16:20:55,966   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:20:55,966     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:20:55,967         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:20:55,967   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:20:55,968     117 |     struct unary_function
2023-09-08T16:20:55,969         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:03,549   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:21:03,549                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:21:03,550                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:21:03,551                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:21:03,551                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:21:03,552                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:35,
2023-09-08T16:21:03,553                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:28:
2023-09-08T16:21:03,553   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:03,554      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:03,555         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:03,556   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:03,556                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:21:03,557                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:21:03,557                    from ./base//sbml/packages/fbc/util/CobraToFbcConverter.h:34:
2023-09-08T16:21:03,558   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:03,559     117 |     struct unary_function
2023-09-08T16:21:03,559         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:03,931   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:21:03,932                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T16:21:03,932                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T16:21:03,933                    from ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:38:
2023-09-08T16:21:03,934   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:03,934     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:03,935         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:21:03,936   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:03,937     117 |     struct unary_function
2023-09-08T16:21:03,937         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:03,944   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:03,945     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:03,945         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:21:03,946   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:03,946     117 |     struct unary_function
2023-09-08T16:21:03,947         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:03,965   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T16:21:03,966   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:03,967     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:03,967         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:21:03,968   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:03,968     117 |     struct unary_function
2023-09-08T16:21:03,969         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:03,979   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp: In member function ‘virtual bool CobraToFbcConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:21:03,980   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:98:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:21:03,981      98 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T16:21:03,981         |              ^
2023-09-08T16:21:03,982   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:96:70: note: ‘props’ declared here
2023-09-08T16:21:03,983      96 |   CobraToFbcConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:21:03,984         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:21:04,833   ./base/sbml/packages/fbc/util/CobraToFbcConverter.cpp:98:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:21:04,834      98 |   if (&props == NULL || !props.hasOption("convert cobra"))
2023-09-08T16:21:04,835         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:21:11,364   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:21:11,364                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:21:11,365                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:21:11,366                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:21:11,366                    from ./base//sbml/conversion/SBMLConverter.h:58,
2023-09-08T16:21:11,367                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:35,
2023-09-08T16:21:11,368                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:28:
2023-09-08T16:21:11,368   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:11,369      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:11,370         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:11,371   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:11,372                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:21:11,372                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:21:11,373                    from ./base//sbml/packages/fbc/util/FbcToCobraConverter.h:34:
2023-09-08T16:21:11,375   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:11,375     117 |     struct unary_function
2023-09-08T16:21:11,376         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:11,742   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:21:11,742                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T16:21:11,743                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T16:21:11,743                    from ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:38:
2023-09-08T16:21:11,744   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:11,745     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:11,745         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:21:11,746   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:11,746     117 |     struct unary_function
2023-09-08T16:21:11,747         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:11,751   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:11,752     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:11,752         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:21:11,753   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:11,754     117 |     struct unary_function
2023-09-08T16:21:11,755         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:11,771   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T16:21:11,771   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:11,772     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:11,773         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:21:11,774   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:11,774     117 |     struct unary_function
2023-09-08T16:21:11,775         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:11,783   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp: In member function ‘virtual bool FbcToCobraConverter::matchesProperties(const ConversionProperties&) const’:
2023-09-08T16:21:11,783   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:14: warning: the compiler can assume that the address of ‘props’ will never be NULL [-Waddress]
2023-09-08T16:21:11,784      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T16:21:11,785         |              ^
2023-09-08T16:21:11,786   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:97:70: note: ‘props’ declared here
2023-09-08T16:21:11,786      97 |   FbcToCobraConverter::matchesProperties(const ConversionProperties &props) const
2023-09-08T16:21:11,787         |                                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:21:12,610   ./base/sbml/packages/fbc/util/FbcToCobraConverter.cpp:99:22: warning: ‘nonnull’ argument ‘props’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:21:12,610      99 |   if (&props == NULL || !props.hasOption("convert fbc to cobra"))
2023-09-08T16:21:12,611         |       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:21:17,825   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:21:17,826                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:21:17,826                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:21:17,827                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30,
2023-09-08T16:21:17,829                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:36:
2023-09-08T16:21:17,829   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:17,829      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:17,830         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:17,830   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:17,831                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2023-09-08T16:21:17,831                    from ./base//sbml/packages/fbc/validator/FbcConsistencyValidator.h:35,
2023-09-08T16:21:17,832                    from ./base/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:30:
2023-09-08T16:21:17,832   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:17,833     117 |     struct unary_function
2023-09-08T16:21:17,833         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:18,499   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:21:18,500                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T16:21:18,500   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:18,501     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:18,501         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:21:18,502   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:18,503     117 |     struct unary_function
2023-09-08T16:21:18,504         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:18,511   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:18,512     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:18,513         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:21:18,513   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:18,514     117 |     struct unary_function
2023-09-08T16:21:18,515         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:22,439   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:21:22,439                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:21:22,440                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:21:22,441                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30,
2023-09-08T16:21:22,441                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:36:
2023-09-08T16:21:22,442   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:22,443      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:22,444         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:22,445   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:22,445                    from ./base//sbml/packages/fbc/validator/FbcValidator.h:62,
2023-09-08T16:21:22,446                    from ./base//sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:35,
2023-09-08T16:21:22,447                    from ./base/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:30:
2023-09-08T16:21:22,448   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:22,449     117 |     struct unary_function
2023-09-08T16:21:22,450         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:26,339   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:21:26,340                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:21:26,340                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:21:26,341                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:32:
2023-09-08T16:21:26,341   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:26,341      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:26,342         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:26,342   In file included from /usr/include/c++/12/functional:49,
2023-09-08T16:21:26,343                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:27:
2023-09-08T16:21:26,343   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:26,344     117 |     struct unary_function
2023-09-08T16:21:26,344         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:27,018   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:21:27,019                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T16:21:27,019                    from ./base//sbml/packages/fbc/common/FbcExtensionTypes.h:32,
2023-09-08T16:21:27,020                    from ./base/sbml/packages/fbc/validator/FbcValidator.cpp:35:
2023-09-08T16:21:27,020   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:27,021     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:27,021         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:21:27,022   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:27,023     117 |     struct unary_function
2023-09-08T16:21:27,024         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:27,031   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:27,032     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:27,033         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:21:27,033   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:27,034     117 |     struct unary_function
2023-09-08T16:21:27,035         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:27,053   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T16:21:27,054   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:27,054     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:27,055         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:21:27,056   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:27,056     117 |     struct unary_function
2023-09-08T16:21:27,057         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:27,063   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:27,064      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T16:21:27,065         |                       ^~~~~~~~~~~~~~
2023-09-08T16:21:27,066   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:27,066     117 |     struct unary_function
2023-09-08T16:21:27,067         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:27,233   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T16:21:27,234   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:12: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T16:21:27,235     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T16:21:27,235         |            ^
2023-09-08T16:21:27,236   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:288:36: note: ‘x’ declared here
2023-09-08T16:21:27,236     288 |   virtual bool visit (const SBase &x)
2023-09-08T16:21:27,237         |                       ~~~~~~~~~~~~~^
2023-09-08T16:21:27,252   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T16:21:27,253   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T16:21:27,253     383 |   if (&d == NULL) return 0;
2023-09-08T16:21:27,254         |          ^
2023-09-08T16:21:27,254   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:381:45: note: ‘d’ declared here
2023-09-08T16:21:27,255     381 | FbcValidator::validate (const SBMLDocument& d)
2023-09-08T16:21:27,255         |                         ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T16:21:27,257   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T16:21:27,257   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T16:21:27,258     413 |   if (&filename == NULL) return 0;
2023-09-08T16:21:27,259         |                 ^
2023-09-08T16:21:27,260   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:411:44: note: ‘filename’ declared here
2023-09-08T16:21:27,260     411 | FbcValidator::validate (const std::string& filename)
2023-09-08T16:21:27,261         |                         ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:21:28,112   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const SBMLDocument&)’:
2023-09-08T16:21:28,113   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:383:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:21:28,113     383 |   if (&d == NULL) return 0;
2023-09-08T16:21:28,114         |   ^~
2023-09-08T16:21:28,126   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual bool FbcValidatingVisitor::visit(const SBase&)’:
2023-09-08T16:21:28,126   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:290:20: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:21:28,127     290 |     if (&x == NULL || x.getPackageName() != "fbc")
2023-09-08T16:21:28,128         |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:21:28,141   ./base/sbml/packages/fbc/validator/FbcValidator.cpp: In member function ‘virtual unsigned int FbcValidator::validate(const std::string&)’:
2023-09-08T16:21:28,142   ./base/sbml/packages/fbc/validator/FbcValidator.cpp:413:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:21:28,142     413 |   if (&filename == NULL) return 0;
2023-09-08T16:21:28,143         |   ^~
2023-09-08T16:21:32,173   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:21:32,174                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:21:32,175                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:21:32,176                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:30:
2023-09-08T16:21:32,176   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:32,177      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:32,178         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:32,179   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:32,179                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:21:32,179   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:32,180     117 |     struct unary_function
2023-09-08T16:21:32,180         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:32,843   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:21:32,844                    from ./base/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:31:
2023-09-08T16:21:32,844   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:32,845     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:32,845         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:21:32,846   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:32,846     117 |     struct unary_function
2023-09-08T16:21:32,847         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:32,852   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:32,853     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:32,853         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:21:32,854   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:32,855     117 |     struct unary_function
2023-09-08T16:21:32,856         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:36,156   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:21:36,157                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:21:36,158                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:21:36,158                    from ./base/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:30:
2023-09-08T16:21:36,159   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:36,160      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:36,160         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:36,161   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:36,162                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:21:36,163   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:36,163     117 |     struct unary_function
2023-09-08T16:21:36,164         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:40,137   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:21:40,138                    from ./base//sbml/Model.h:446,
2023-09-08T16:21:40,139                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:28:
2023-09-08T16:21:40,140   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:40,140      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:40,141         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:40,142   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:40,142                    from ./base//sbml/Model.h:444:
2023-09-08T16:21:40,143   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:40,144     117 |     struct unary_function
2023-09-08T16:21:40,145         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:40,668   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:21:40,669                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T16:21:40,669                    from ./base/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:30:
2023-09-08T16:21:40,670   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:40,671     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:40,671         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:21:40,672   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:40,672     117 |     struct unary_function
2023-09-08T16:21:40,673         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:40,679   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:40,679     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:40,680         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:21:40,680   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:40,681     117 |     struct unary_function
2023-09-08T16:21:40,682         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:40,699   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T16:21:40,699   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:40,700     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:40,701         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:21:40,701   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:40,702     117 |     struct unary_function
2023-09-08T16:21:40,703         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:44,553   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:21:44,554                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:21:44,555                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:21:44,555                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:39,
2023-09-08T16:21:44,556                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:28:
2023-09-08T16:21:44,557   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:44,558      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:44,558         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:44,559   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:44,560                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:35:
2023-09-08T16:21:44,560   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:44,561     117 |     struct unary_function
2023-09-08T16:21:44,562         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:45,141   In file included from ./base//sbml/packages/fbc/sbml/Objective.h:68,
2023-09-08T16:21:45,142                    from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:47,
2023-09-08T16:21:45,142                    from ./base/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:29:
2023-09-08T16:21:45,143   ./base//sbml/packages/fbc/sbml/FluxObjective.h:543:42: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:45,144     543 | struct IdEq<FluxObjective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:45,145         |                                          ^~~~~~~~~~~~~~
2023-09-08T16:21:45,145   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:45,146     117 |     struct unary_function
2023-09-08T16:21:45,147         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:45,150   ./base//sbml/packages/fbc/sbml/Objective.h:830:38: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:45,151     830 | struct IdEq<Objective> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:45,151         |                                      ^~~~~~~~~~~~~~
2023-09-08T16:21:45,152   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:45,153     117 |     struct unary_function
2023-09-08T16:21:45,153         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:45,170   In file included from ./base//sbml/packages/fbc/extension/FbcModelPlugin.h:48:
2023-09-08T16:21:45,170   ./base//sbml/packages/fbc/sbml/GeneAssociation.h:520:44: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:45,171     520 | struct IdEq<GeneAssociation> : public std::unary_function<SBase*, bool>
2023-09-08T16:21:45,172         |                                            ^~~~~~~~~~~~~~
2023-09-08T16:21:45,172   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:45,173     117 |     struct unary_function
2023-09-08T16:21:45,173         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:50,311   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:21:50,311                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:21:50,312                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:21:50,313                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:21:50,313                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:21:50,314                    from ./base//sbml/extension/SBMLExtensionRegister.h:42,
2023-09-08T16:21:50,315                    from ./base/sbml/packages/layout/extension/LayoutExtension.cpp:34:
2023-09-08T16:21:50,316   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:50,316      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:50,317         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:50,318   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:50,319                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:21:50,319                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:21:50,320                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:21:50,321   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:50,321     117 |     struct unary_function
2023-09-08T16:21:50,322         |            ^~~~~~~~~~~~~~
2023-09-08T16:21:56,062   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:21:56,062                    from ./base//sbml/Model.h:446,
2023-09-08T16:21:56,062                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:49,
2023-09-08T16:21:56,063                    from ./base/sbml/packages/layout/extension/LayoutModelPlugin.cpp:36:
2023-09-08T16:21:56,064   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:21:56,064      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:21:56,065         |                           ^~~~~~~~~~~~~~
2023-09-08T16:21:56,066   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:21:56,067                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:21:56,067                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:21:56,068                    from ./base//sbml/packages/layout/extension/LayoutModelPlugin.h:48:
2023-09-08T16:21:56,068   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:21:56,069     117 |     struct unary_function
2023-09-08T16:21:56,069         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:01,233   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:22:01,234                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:22:01,234                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:22:01,235                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2023-09-08T16:22:01,235                    from ./base//sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:58,
2023-09-08T16:22:01,236                    from ./base/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:33:
2023-09-08T16:22:01,236   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:01,237      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:01,237         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:01,238   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:01,239                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:22:01,239                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:22:01,240                    from ./base//sbml/extension/SBMLDocumentPlugin.h:51:
2023-09-08T16:22:01,240   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:01,241     117 |     struct unary_function
2023-09-08T16:22:01,241         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:08,994   In file included from ./base//sbml/SpeciesReference.h:260,
2023-09-08T16:22:08,995                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:45,
2023-09-08T16:22:08,996                    from ./base/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:36:
2023-09-08T16:22:08,996   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:08,997      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:08,998         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:08,999   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:09,000                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:22:09,000                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:22:09,001                    from ./base//sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:44:
2023-09-08T16:22:09,002   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:09,003     117 |     struct unary_function
2023-09-08T16:22:09,003         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:15,616   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:22:15,616                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:22:15,617                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:22:15,618                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:22:15,618                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:22:15,619                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:22:15,620                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:22:15,620                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T16:22:15,621                    from ./base/sbml/packages/layout/sbml/BoundingBox.cpp:30:
2023-09-08T16:22:15,622   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:15,622      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:15,623         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:15,624   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:15,624                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:44:
2023-09-08T16:22:15,625   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:15,625     117 |     struct unary_function
2023-09-08T16:22:15,626         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:23,592   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:22:23,592                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:22:23,593                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:22:23,593                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:22:23,594                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:22:23,594                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:22:23,595                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:22:23,596                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T16:22:23,596                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T16:22:23,597                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:45,
2023-09-08T16:22:23,598                    from ./base/sbml/packages/layout/sbml/CompartmentGlyph.cpp:32:
2023-09-08T16:22:23,598   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:23,599      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:23,600         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:23,601   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:23,602                    from ./base//sbml/packages/layout/sbml/CompartmentGlyph.h:44:
2023-09-08T16:22:23,603   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:23,604     117 |     struct unary_function
2023-09-08T16:22:23,605         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:29,677   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:22:29,677                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:22:29,678                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:22:29,678                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:22:29,679                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:22:29,680                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:22:29,681                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:22:29,681                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2023-09-08T16:22:29,682                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:55,
2023-09-08T16:22:29,682                    from ./base/sbml/packages/layout/sbml/CubicBezier.cpp:30:
2023-09-08T16:22:29,683   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:29,684      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:29,684         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:29,685   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:29,686                    from ./base//sbml/packages/layout/sbml/CubicBezier.h:53:
2023-09-08T16:22:29,686   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:29,687     117 |     struct unary_function
2023-09-08T16:22:29,688         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:34,961   In file included from ./base//sbml/packages/layout/sbml/Curve.h:68,
2023-09-08T16:22:34,961                    from ./base/sbml/packages/layout/sbml/Curve.cpp:33:
2023-09-08T16:22:34,962   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:34,963      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:34,963         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:34,964   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:34,964                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:22:34,965                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:22:34,965                    from /usr/include/c++/12/ios:42,
2023-09-08T16:22:34,966                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:22:34,966                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:22:34,967                    from ./base/sbml/packages/layout/sbml/Curve.cpp:31:
2023-09-08T16:22:34,967   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:34,968     117 |     struct unary_function
2023-09-08T16:22:34,968         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:41,615   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:22:41,616                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:22:41,616                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:22:41,617                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:22:41,618                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:22:41,618                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:22:41,619                    from ./base//sbml/packages/layout/sbml/Dimensions.h:56,
2023-09-08T16:22:41,619                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:32:
2023-09-08T16:22:41,620   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:41,621      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:41,622         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:41,622   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:41,623                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:22:41,624                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:22:41,625                    from /usr/include/c++/12/ios:42,
2023-09-08T16:22:41,625                    from /usr/include/c++/12/istream:38,
2023-09-08T16:22:41,626                    from /usr/include/c++/12/sstream:38,
2023-09-08T16:22:41,627                    from ./base/sbml/packages/layout/sbml/Dimensions.cpp:30:
2023-09-08T16:22:41,628   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:41,628     117 |     struct unary_function
2023-09-08T16:22:41,629         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:47,596   In file included from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:54,
2023-09-08T16:22:47,597                    from ./base/sbml/packages/layout/sbml/GeneralGlyph.cpp:32:
2023-09-08T16:22:47,597   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:47,598      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:47,599         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:47,600   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:47,600                    from ./base//sbml/packages/layout/sbml/GeneralGlyph.h:52:
2023-09-08T16:22:47,601   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:47,602     117 |     struct unary_function
2023-09-08T16:22:47,603         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:55,928   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:22:55,928                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:22:55,929                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:22:55,929                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:22:55,930                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:22:55,930                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:22:55,931                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:22:55,931                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T16:22:55,932                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T16:22:55,932                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T16:22:55,933                    from ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:30:
2023-09-08T16:22:55,933   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:22:55,934      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:22:55,934         |                           ^~~~~~~~~~~~~~
2023-09-08T16:22:55,935   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:22:55,936                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:22:55,936                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:22:55,937                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:22:55,937                    from ./base//sbml/SBase.h:145,
2023-09-08T16:22:55,938                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T16:22:55,939   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:22:55,939     117 |     struct unary_function
2023-09-08T16:22:55,940         |            ^~~~~~~~~~~~~~
2023-09-08T16:22:56,392   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T16:22:56,393   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:11: warning: the compiler can assume that the address of ‘id’ will never be NULL [-Waddress]
2023-09-08T16:22:56,394     373 |   if (&id != NULL && id.empty())
2023-09-08T16:22:56,394         |           ^
2023-09-08T16:22:56,395   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:371:47: note: ‘id’ declared here
2023-09-08T16:22:56,396     371 | int GraphicalObject::setId(const std::string& id)
2023-09-08T16:22:56,397         |                            ~~~~~~~~~~~~~~~~~~~^~
2023-09-08T16:22:56,397   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T16:22:56,398   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:15: warning: the compiler can assume that the address of ‘metaid’ will never be NULL [-Waddress]
2023-09-08T16:22:56,399     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T16:22:56,400         |               ^
2023-09-08T16:22:56,400   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:417:54: note: ‘metaid’ declared here
2023-09-08T16:22:56,401     417 | int GraphicalObject::setMetaIdRef(const std::string& metaid)
2023-09-08T16:22:56,402         |                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:22:57,050   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setId(const std::string&)’:
2023-09-08T16:22:57,050   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:373:19: warning: ‘nonnull’ argument ‘id’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:22:57,051     373 |   if (&id != NULL && id.empty())
2023-09-08T16:22:57,052         |       ~~~~~~~~~~~~^~~~~~~~~~~~~
2023-09-08T16:22:57,052   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual int GraphicalObject::setMetaIdRef(const std::string&)’:
2023-09-08T16:22:57,053   ./base/sbml/packages/layout/sbml/GraphicalObject.cpp:419:23: warning: ‘nonnull’ argument ‘metaid’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:22:57,053     419 |   if (&metaid != NULL && metaid.empty())
2023-09-08T16:22:57,054         |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-09-08T16:23:05,082   In file included from ./base//sbml/packages/layout/sbml/Layout.h:57,
2023-09-08T16:23:05,083                    from ./base/sbml/packages/layout/sbml/Layout.cpp:36:
2023-09-08T16:23:05,084   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:23:05,084      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:23:05,085         |                           ^~~~~~~~~~~~~~
2023-09-08T16:23:05,085   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:23:05,086                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:23:05,087                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:23:05,087                    from /usr/include/c++/12/ios:42,
2023-09-08T16:23:05,088                    from /usr/include/c++/12/ostream:38,
2023-09-08T16:23:05,088                    from /usr/include/c++/12/iostream:39,
2023-09-08T16:23:05,089                    from ./base/sbml/packages/layout/sbml/Layout.cpp:31:
2023-09-08T16:23:05,090   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:23:05,090     117 |     struct unary_function
2023-09-08T16:23:05,091         |            ^~~~~~~~~~~~~~
2023-09-08T16:23:05,913   ./base/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual int Layout::setName(const std::string&)’:
2023-09-08T16:23:05,913   ./base/sbml/packages/layout/sbml/Layout.cpp:453:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:23:05,914     453 |   if (&(name) == NULL)
2023-09-08T16:23:05,915         |               ^
2023-09-08T16:23:05,915   ./base/sbml/packages/layout/sbml/Layout.cpp:448:41: note: ‘name’ declared here
2023-09-08T16:23:05,916     448 | int Layout::setName (const std::string& name)
2023-09-08T16:23:05,917         |                      ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:23:06,739   ./base/sbml/packages/layout/sbml/Layout.cpp:453:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:23:06,740     453 |   if (&(name) == NULL)
2023-09-08T16:23:06,741         |   ^~
2023-09-08T16:23:18,234   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:23:18,234                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:23:18,235                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:23:18,236                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:23:18,237                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:23:18,237                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:23:18,238                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:23:18,239                    from ./base//sbml/packages/layout/sbml/LineSegment.h:54,
2023-09-08T16:23:18,240                    from ./base/sbml/packages/layout/sbml/LineSegment.cpp:30:
2023-09-08T16:23:18,240   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:23:18,241      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:23:18,242         |                           ^~~~~~~~~~~~~~
2023-09-08T16:23:18,243   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:23:18,244                    from ./base//sbml/packages/layout/sbml/LineSegment.h:51:
2023-09-08T16:23:18,244   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:23:18,245     117 |     struct unary_function
2023-09-08T16:23:18,245         |            ^~~~~~~~~~~~~~
2023-09-08T16:23:24,528   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:23:24,529                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:23:24,529                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:23:24,530                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:23:24,530                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:23:24,531                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:23:24,532                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:23:24,532                    from ./base/sbml/packages/layout/sbml/Point.cpp:32:
2023-09-08T16:23:24,533   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:23:24,533      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:23:24,534         |                           ^~~~~~~~~~~~~~
2023-09-08T16:23:24,535   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:23:24,535                    from /usr/include/c++/12/bits/locale_classes.h:40,
2023-09-08T16:23:24,536                    from /usr/include/c++/12/bits/ios_base.h:41,
2023-09-08T16:23:24,536                    from /usr/include/c++/12/ios:42,
2023-09-08T16:23:24,537                    from /usr/include/c++/12/istream:38,
2023-09-08T16:23:24,537                    from /usr/include/c++/12/sstream:38,
2023-09-08T16:23:24,538                    from ./base/sbml/packages/layout/sbml/Point.cpp:30:
2023-09-08T16:23:24,539   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:23:24,539     117 |     struct unary_function
2023-09-08T16:23:24,540         |            ^~~~~~~~~~~~~~
2023-09-08T16:23:30,540   In file included from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:60,
2023-09-08T16:23:30,540                    from ./base/sbml/packages/layout/sbml/ReactionGlyph.cpp:32:
2023-09-08T16:23:30,541   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:23:30,542      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:23:30,543         |                           ^~~~~~~~~~~~~~
2023-09-08T16:23:30,543   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:23:30,544                    from ./base//sbml/packages/layout/sbml/ReactionGlyph.h:58:
2023-09-08T16:23:30,545   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:23:30,545     117 |     struct unary_function
2023-09-08T16:23:30,546         |            ^~~~~~~~~~~~~~
2023-09-08T16:23:38,375   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:23:38,376                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:23:38,377                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:23:38,377                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:23:38,378                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:23:38,379                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:23:38,380                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:23:38,380                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T16:23:38,381                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T16:23:38,382                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:54,
2023-09-08T16:23:38,383                    from ./base/sbml/packages/layout/sbml/ReferenceGlyph.cpp:30:
2023-09-08T16:23:38,383   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:23:38,384      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:23:38,384         |                           ^~~~~~~~~~~~~~
2023-09-08T16:23:38,385   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:23:38,385                    from ./base//sbml/packages/layout/sbml/ReferenceGlyph.h:52:
2023-09-08T16:23:38,386   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:23:38,386     117 |     struct unary_function
2023-09-08T16:23:38,387         |            ^~~~~~~~~~~~~~
2023-09-08T16:23:45,262   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:23:45,263                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:23:45,264                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:23:45,264                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:23:45,265                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:23:45,265                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:23:45,266                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:23:45,266                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T16:23:45,267                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T16:23:45,268                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:49,
2023-09-08T16:23:45,268                    from ./base/sbml/packages/layout/sbml/SpeciesGlyph.cpp:30:
2023-09-08T16:23:45,269   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:23:45,270      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:23:45,270         |                           ^~~~~~~~~~~~~~
2023-09-08T16:23:45,271   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:23:45,272                    from ./base//sbml/packages/layout/sbml/SpeciesGlyph.h:48:
2023-09-08T16:23:45,273   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:23:45,273     117 |     struct unary_function
2023-09-08T16:23:45,274         |            ^~~~~~~~~~~~~~
2023-09-08T16:23:51,127   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:23:51,128                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:23:51,129                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:23:51,129                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:23:51,130                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:23:51,131                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:23:51,131                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:23:51,132                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T16:23:51,132                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T16:23:51,133                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:54,
2023-09-08T16:23:51,134                    from ./base/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:30:
2023-09-08T16:23:51,134   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:23:51,135      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:23:51,136         |                           ^~~~~~~~~~~~~~
2023-09-08T16:23:51,137   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:23:51,138                    from ./base//sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:52:
2023-09-08T16:23:51,138   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:23:51,139     117 |     struct unary_function
2023-09-08T16:23:51,139         |            ^~~~~~~~~~~~~~
2023-09-08T16:23:58,147   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:23:58,147                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:23:58,148                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:23:58,148                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:23:58,149                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:23:58,149                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:23:58,150                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:23:58,150                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T16:23:58,151                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T16:23:58,151                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:50,
2023-09-08T16:23:58,152                    from ./base/sbml/packages/layout/sbml/TextGlyph.cpp:30:
2023-09-08T16:23:58,152   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:23:58,153      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:23:58,154         |                           ^~~~~~~~~~~~~~
2023-09-08T16:23:58,154   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:23:58,155                    from ./base//sbml/packages/layout/sbml/TextGlyph.h:49:
2023-09-08T16:23:58,155   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:23:58,156     117 |     struct unary_function
2023-09-08T16:23:58,157         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:04,470   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:24:04,470                    from ./base//sbml/Model.h:446,
2023-09-08T16:24:04,471                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:36:
2023-09-08T16:24:04,472   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:04,472      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:04,473         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:04,474   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:04,474                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:24:04,475                    from ./base//sbml/xml/XMLToken.h:45,
2023-09-08T16:24:04,476                    from ./base/sbml/packages/layout/util/LayoutAnnotation.cpp:31:
2023-09-08T16:24:04,476   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:04,477     117 |     struct unary_function
2023-09-08T16:24:04,477         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:09,384   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:24:09,385                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:24:09,386                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:24:09,386                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:24:09,387                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:24:09,388                    from ./base//sbml/packages/layout/extension/LayoutExtension.h:43,
2023-09-08T16:24:09,389                    from ./base//sbml/packages/layout/sbml/Point.h:51,
2023-09-08T16:24:09,389                    from ./base//sbml/packages/layout/sbml/BoundingBox.h:48,
2023-09-08T16:24:09,390                    from ./base//sbml/packages/layout/sbml/GraphicalObject.h:60,
2023-09-08T16:24:09,391                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:36,
2023-09-08T16:24:09,392                    from ./base/sbml/packages/layout/util/LayoutUtilities.cpp:30:
2023-09-08T16:24:09,392   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:09,393      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:09,393         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:09,394   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:09,394                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:24:09,395                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:24:09,395                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:24:09,396                    from ./base//sbml/SBase.h:145,
2023-09-08T16:24:09,396                    from ./base//sbml/packages/layout/util/LayoutUtilities.h:33:
2023-09-08T16:24:09,397   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:09,397     117 |     struct unary_function
2023-09-08T16:24:09,398         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:13,460   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:24:13,461                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:24:13,461                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:24:13,462                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38,
2023-09-08T16:24:13,463                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:41:
2023-09-08T16:24:13,463   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:13,464      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:13,465         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:13,465   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:13,466                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2023-09-08T16:24:13,467                    from ./base//sbml/packages/layout/validator/LayoutConsistencyValidator.h:42,
2023-09-08T16:24:13,467                    from ./base/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:39:
2023-09-08T16:24:13,468   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:13,469     117 |     struct unary_function
2023-09-08T16:24:13,470         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:21,260   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:24:21,261                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:24:21,261                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:24:21,262                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38,
2023-09-08T16:24:21,263                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:41:
2023-09-08T16:24:21,263   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:21,264      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:21,265         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:21,265   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:21,266                    from ./base//sbml/packages/layout/validator/LayoutValidator.h:66,
2023-09-08T16:24:21,267                    from ./base//sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:42,
2023-09-08T16:24:21,268                    from ./base/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:39:
2023-09-08T16:24:21,269   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:21,269     117 |     struct unary_function
2023-09-08T16:24:21,270         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:25,126   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:24:25,126                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:24:25,127                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:24:25,127                    from ./base/sbml/packages/layout/validator/LayoutValidator.cpp:33:
2023-09-08T16:24:25,128   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:25,128      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:25,129         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:25,130   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:25,130                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:24:25,131   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:25,131     117 |     struct unary_function
2023-09-08T16:24:25,132         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:25,870   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:67:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:25,870      67 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T16:24:25,871         |                       ^~~~~~~~~~~~~~
2023-09-08T16:24:25,871   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:25,872     117 |     struct unary_function
2023-09-08T16:24:25,873         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:26,180   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T16:24:26,181   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:24: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T16:24:26,182     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T16:24:26,183         |                        ^
2023-09-08T16:24:26,183   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:417:41: note: ‘x’ declared here
2023-09-08T16:24:26,184     417 |         virtual bool visit(const SBase &x)
2023-09-08T16:24:26,185         |                            ~~~~~~~~~~~~~^
2023-09-08T16:24:26,210   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T16:24:26,211   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T16:24:26,211     550 |   if (&d == NULL) return 0;
2023-09-08T16:24:26,212         |          ^
2023-09-08T16:24:26,213   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:548:48: note: ‘d’ declared here
2023-09-08T16:24:26,213     548 | LayoutValidator::validate (const SBMLDocument& d)
2023-09-08T16:24:26,214         |                            ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T16:24:26,215   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T16:24:26,216   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T16:24:26,216     592 |   if (&filename == NULL) return 0;
2023-09-08T16:24:26,217         |                 ^
2023-09-08T16:24:26,218   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:590:47: note: ‘filename’ declared here
2023-09-08T16:24:26,219     590 | LayoutValidator::validate (const std::string& filename)
2023-09-08T16:24:26,220         |                            ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:24:27,389   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const SBMLDocument&)’:
2023-09-08T16:24:27,390   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:550:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:24:27,390     550 |   if (&d == NULL) return 0;
2023-09-08T16:24:27,391         |   ^~
2023-09-08T16:24:27,417   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual bool LayoutValidatingVisitor::visit(const SBase&)’:
2023-09-08T16:24:27,418   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:419:32: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:24:27,418     419 |                 if (&x == NULL || x.getPackageName() != "layout")
2023-09-08T16:24:27,419         |                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:24:27,440   ./base/sbml/packages/layout/validator/LayoutValidator.cpp: In member function ‘virtual unsigned int LayoutValidator::validate(const std::string&)’:
2023-09-08T16:24:27,440   ./base/sbml/packages/layout/validator/LayoutValidator.cpp:592:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:24:27,441     592 |   if (&filename == NULL) return 0;
2023-09-08T16:24:27,442         |   ^~
2023-09-08T16:24:32,530   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:24:32,530                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:24:32,531                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:24:32,532                    from ./base/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:38:
2023-09-08T16:24:32,532   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:32,533      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:32,534         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:32,534   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:32,535                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:24:32,536   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:32,536     117 |     struct unary_function
2023-09-08T16:24:32,537         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:36,684   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:24:36,684                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:24:36,685                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:24:36,686                    from ./base/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:38:
2023-09-08T16:24:36,686   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:36,687      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:36,688         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:36,688   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:36,689                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:24:36,690   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:36,690     117 |     struct unary_function
2023-09-08T16:24:36,691         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:40,611   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:24:40,611                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:24:40,612                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:24:40,613                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:46,
2023-09-08T16:24:40,613                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:35:
2023-09-08T16:24:40,614   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:40,615      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:40,615         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:40,616   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:40,616                    from ./base/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:42:
2023-09-08T16:24:40,617   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:40,617     117 |     struct unary_function
2023-09-08T16:24:40,618         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:46,530   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:24:46,530                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:24:46,531                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:24:46,531                    from ./base//sbml/extension/SBasePluginCreatorBase.h:43,
2023-09-08T16:24:46,532                    from ./base//sbml/extension/SBMLExtension.h:521,
2023-09-08T16:24:46,532                    from ./base//sbml/extension/SBMLExtensionRegister.h:42,
2023-09-08T16:24:46,533                    from ./base/sbml/packages/qual/extension/QualExtension.cpp:34:
2023-09-08T16:24:46,533   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:46,534      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:46,535         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:46,536   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:46,536                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:24:46,537                    from ./base//sbml/SBMLError.h:457,
2023-09-08T16:24:46,538                    from ./base//sbml/SBMLDocument.h:288:
2023-09-08T16:24:46,539   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:46,539     117 |     struct unary_function
2023-09-08T16:24:46,540         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:51,771   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:24:51,772                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:24:51,772                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:24:51,773                    from ./base//sbml/extension/SBasePlugin.h:253,
2023-09-08T16:24:51,774                    from ./base//sbml/packages/qual/extension/QualModelPlugin.h:54,
2023-09-08T16:24:51,774                    from ./base/sbml/packages/qual/extension/QualModelPlugin.cpp:35:
2023-09-08T16:24:51,775   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:51,775      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:51,776         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:51,777   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:51,777                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:24:51,778                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:24:51,779                    from ./base//sbml/extension/SBasePlugin.h:251:
2023-09-08T16:24:51,779   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:51,780     117 |     struct unary_function
2023-09-08T16:24:51,781         |            ^~~~~~~~~~~~~~
2023-09-08T16:24:56,875   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:24:56,875                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:24:56,876                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:24:56,877                    from ./base//sbml/extension/SBMLDocumentPlugin.h:52,
2023-09-08T16:24:56,877                    from ./base//sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:58,
2023-09-08T16:24:56,878                    from ./base/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:39:
2023-09-08T16:24:56,878   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:24:56,879      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:24:56,879         |                           ^~~~~~~~~~~~~~
2023-09-08T16:24:56,880   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:24:56,880                    from ./base//sbml/xml/XMLError.h:559,
2023-09-08T16:24:56,881                    from ./base//sbml/SBMLErrorLog.h:102,
2023-09-08T16:24:56,881                    from ./base//sbml/extension/SBMLDocumentPlugin.h:51:
2023-09-08T16:24:56,882   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:24:56,882     117 |     struct unary_function
2023-09-08T16:24:56,883         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:00,872   In file included from ./base//sbml/packages/qual/sbml/DefaultTerm.h:57,
2023-09-08T16:25:00,873                    from ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:35:
2023-09-08T16:25:00,874   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:00,874      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:00,875         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:00,876   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:00,876                    from ./base//sbml/packages/qual/sbml/DefaultTerm.h:53:
2023-09-08T16:25:00,877   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:00,878     117 |     struct unary_function
2023-09-08T16:25:00,879         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:01,590   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T16:25:01,591   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:25:01,592      81 |   if (&orig == NULL)
2023-09-08T16:25:01,592         |             ^
2023-09-08T16:25:01,593   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:78:46: note: ‘orig’ declared here
2023-09-08T16:25:01,594      78 | DefaultTerm::DefaultTerm (const DefaultTerm& orig)
2023-09-08T16:25:01,595         |                           ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:01,595   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T16:25:01,596   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:25:01,597      99 |   if (&rhs == NULL)
2023-09-08T16:25:01,598         |            ^
2023-09-08T16:25:01,598   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:97:43: note: ‘rhs’ declared here
2023-09-08T16:25:01,599      97 | DefaultTerm::operator=(const DefaultTerm& rhs)
2023-09-08T16:25:01,600         |                        ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:25:02,129   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In copy constructor ‘DefaultTerm::DefaultTerm(const DefaultTerm&)’:
2023-09-08T16:25:02,130   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:81:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:02,130      81 |   if (&orig == NULL)
2023-09-08T16:25:02,131         |   ^~
2023-09-08T16:25:02,132   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp: In member function ‘DefaultTerm& DefaultTerm::operator=(const DefaultTerm&)’:
2023-09-08T16:25:02,132   ./base/sbml/packages/qual/sbml/DefaultTerm.cpp:99:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:02,133      99 |   if (&rhs == NULL)
2023-09-08T16:25:02,133         |   ^~
2023-09-08T16:25:06,126   In file included from ./base//sbml/packages/qual/sbml/FunctionTerm.h:58,
2023-09-08T16:25:06,126                    from ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:35:
2023-09-08T16:25:06,127   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:06,127      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:06,128         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:06,128   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:06,129                    from ./base//sbml/packages/qual/sbml/FunctionTerm.h:54:
2023-09-08T16:25:06,129   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:06,129     117 |     struct unary_function
2023-09-08T16:25:06,130         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:06,853   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T16:25:06,854   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:25:06,854      88 |   if (&orig == NULL)
2023-09-08T16:25:06,855         |             ^
2023-09-08T16:25:06,856   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:85:49: note: ‘orig’ declared here
2023-09-08T16:25:06,857      85 | FunctionTerm::FunctionTerm (const FunctionTerm& orig)
2023-09-08T16:25:06,857         |                             ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:06,859   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T16:25:06,860   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:25:06,860     114 |   if (&rhs == NULL)
2023-09-08T16:25:06,861         |            ^
2023-09-08T16:25:06,862   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:112:45: note: ‘rhs’ declared here
2023-09-08T16:25:06,863     112 | FunctionTerm::operator=(const FunctionTerm& rhs)
2023-09-08T16:25:06,863         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:25:06,889   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T16:25:06,889   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:25:06,890     651 |   if (&orig == NULL)
2023-09-08T16:25:06,891         |             ^
2023-09-08T16:25:06,891   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:648:70: note: ‘orig’ declared here
2023-09-08T16:25:06,892     648 | ListOfFunctionTerms::ListOfFunctionTerms (const ListOfFunctionTerms& orig)
2023-09-08T16:25:06,893         |                                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:06,894   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T16:25:06,895   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:25:06,896     673 |   if (&rhs == NULL)
2023-09-08T16:25:06,896         |            ^
2023-09-08T16:25:06,897   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:671:59: note: ‘rhs’ declared here
2023-09-08T16:25:06,898     671 | ListOfFunctionTerms::operator=(const ListOfFunctionTerms& rhs)
2023-09-08T16:25:06,898         |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:25:07,506   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘FunctionTerm::FunctionTerm(const FunctionTerm&)’:
2023-09-08T16:25:07,507   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:88:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:07,507      88 |   if (&orig == NULL)
2023-09-08T16:25:07,508         |   ^~
2023-09-08T16:25:07,508   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘FunctionTerm& FunctionTerm::operator=(const FunctionTerm&)’:
2023-09-08T16:25:07,509   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:07,509     114 |   if (&rhs == NULL)
2023-09-08T16:25:07,510         |   ^~
2023-09-08T16:25:07,510   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘ListOfFunctionTerms& ListOfFunctionTerms::operator=(const ListOfFunctionTerms&)’:
2023-09-08T16:25:07,511   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:673:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:07,512     673 |   if (&rhs == NULL)
2023-09-08T16:25:07,512         |   ^~
2023-09-08T16:25:07,519   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp: In copy constructor ‘ListOfFunctionTerms::ListOfFunctionTerms(const ListOfFunctionTerms&)’:
2023-09-08T16:25:07,520   ./base/sbml/packages/qual/sbml/FunctionTerm.cpp:651:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:07,521     651 |   if (&orig == NULL)
2023-09-08T16:25:07,522         |   ^~
2023-09-08T16:25:12,824   In file included from ./base//sbml/packages/qual/sbml/Input.h:87,
2023-09-08T16:25:12,824                    from ./base/sbml/packages/qual/sbml/Input.cpp:35:
2023-09-08T16:25:12,825   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:12,826      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:12,827         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:12,827   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:12,828                    from ./base//sbml/packages/qual/sbml/Input.h:83:
2023-09-08T16:25:12,829   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:12,830     117 |     struct unary_function
2023-09-08T16:25:12,831         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:13,563   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T16:25:13,564   ./base/sbml/packages/qual/sbml/Input.cpp:91:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:25:13,565      91 |   if (&orig == NULL)
2023-09-08T16:25:13,566         |             ^
2023-09-08T16:25:13,566   ./base/sbml/packages/qual/sbml/Input.cpp:88:28: note: ‘orig’ declared here
2023-09-08T16:25:13,567      88 | Input::Input (const Input& orig)
2023-09-08T16:25:13,568         |               ~~~~~~~~~~~~~^~~~
2023-09-08T16:25:13,568   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T16:25:13,569   ./base/sbml/packages/qual/sbml/Input.cpp:114:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:25:13,570     114 |   if (&rhs == NULL)
2023-09-08T16:25:13,571         |            ^
2023-09-08T16:25:13,571   ./base/sbml/packages/qual/sbml/Input.cpp:112:31: note: ‘rhs’ declared here
2023-09-08T16:25:13,572     112 | Input::operator=(const Input& rhs)
2023-09-08T16:25:13,573         |                  ~~~~~~~~~~~~~^~~
2023-09-08T16:25:13,574   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T16:25:13,575   ./base/sbml/packages/qual/sbml/Input.cpp:287:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T16:25:13,576     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T16:25:13,576         |                             ^
2023-09-08T16:25:13,577   ./base/sbml/packages/qual/sbml/Input.cpp:285:49: note: ‘qualitativeSpecies’ declared here
2023-09-08T16:25:13,577     285 | Input::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T16:25:13,578         |                              ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T16:25:13,578   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T16:25:13,579   ./base/sbml/packages/qual/sbml/Input.cpp:328:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:25:13,580     328 |   if (&(name) == NULL)
2023-09-08T16:25:13,580         |               ^
2023-09-08T16:25:13,581   ./base/sbml/packages/qual/sbml/Input.cpp:326:35: note: ‘name’ declared here
2023-09-08T16:25:13,582     326 | Input::setName(const std::string& name)
2023-09-08T16:25:13,582         |                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:13,618   ./base/sbml/packages/qual/sbml/Input.cpp: At global scope:
2023-09-08T16:25:13,619   ./base/sbml/packages/qual/sbml/Input.cpp:956:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:13,620     956 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T16:25:13,620         |                             ^~~~~~~~~~~~~~
2023-09-08T16:25:13,621   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:13,622     117 |     struct unary_function
2023-09-08T16:25:13,622         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:14,232   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setName(const std::string&)’:
2023-09-08T16:25:14,233   ./base/sbml/packages/qual/sbml/Input.cpp:328:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:14,233     328 |   if (&(name) == NULL)
2023-09-08T16:25:14,234         |   ^~
2023-09-08T16:25:14,250   ./base/sbml/packages/qual/sbml/Input.cpp: In copy constructor ‘Input::Input(const Input&)’:
2023-09-08T16:25:14,251   ./base/sbml/packages/qual/sbml/Input.cpp:91:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:14,252      91 |   if (&orig == NULL)
2023-09-08T16:25:14,253         |   ^~
2023-09-08T16:25:14,253   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘Input& Input::operator=(const Input&)’:
2023-09-08T16:25:14,254   ./base/sbml/packages/qual/sbml/Input.cpp:114:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:14,255     114 |   if (&rhs == NULL)
2023-09-08T16:25:14,255         |   ^~
2023-09-08T16:25:14,256   ./base/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual int Input::setQualitativeSpecies(const std::string&)’:
2023-09-08T16:25:14,257   ./base/sbml/packages/qual/sbml/Input.cpp:287:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:14,257     287 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T16:25:14,258         |   ^~
2023-09-08T16:25:21,151   In file included from ./base//sbml/packages/qual/sbml/Output.h:78,
2023-09-08T16:25:21,152                    from ./base/sbml/packages/qual/sbml/Output.cpp:35:
2023-09-08T16:25:21,153   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:21,153      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:21,154         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:21,155   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:21,155                    from ./base//sbml/packages/qual/sbml/Output.h:74:
2023-09-08T16:25:21,156   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:21,156     117 |     struct unary_function
2023-09-08T16:25:21,157         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:21,882   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T16:25:21,883   ./base/sbml/packages/qual/sbml/Output.cpp:89:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:25:21,883      89 |   if (&orig == NULL)
2023-09-08T16:25:21,884         |             ^
2023-09-08T16:25:21,884   ./base/sbml/packages/qual/sbml/Output.cpp:86:31: note: ‘orig’ declared here
2023-09-08T16:25:21,885      86 | Output::Output (const Output& orig)
2023-09-08T16:25:21,885         |                 ~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:21,886   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T16:25:21,887   ./base/sbml/packages/qual/sbml/Output.cpp:111:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:25:21,887     111 |   if (&rhs == NULL)
2023-09-08T16:25:21,888         |            ^
2023-09-08T16:25:21,888   ./base/sbml/packages/qual/sbml/Output.cpp:109:33: note: ‘rhs’ declared here
2023-09-08T16:25:21,889     109 | Output::operator=(const Output& rhs)
2023-09-08T16:25:21,889         |                   ~~~~~~~~~~~~~~^~~
2023-09-08T16:25:21,892   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T16:25:21,893   ./base/sbml/packages/qual/sbml/Output.cpp:263:29: warning: the compiler can assume that the address of ‘qualitativeSpecies’ will never be NULL [-Waddress]
2023-09-08T16:25:21,894     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T16:25:21,895         |                             ^
2023-09-08T16:25:21,896   ./base/sbml/packages/qual/sbml/Output.cpp:261:50: note: ‘qualitativeSpecies’ declared here
2023-09-08T16:25:21,897     261 | Output::setQualitativeSpecies(const std::string& qualitativeSpecies)
2023-09-08T16:25:21,898         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-09-08T16:25:21,898   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T16:25:21,899   ./base/sbml/packages/qual/sbml/Output.cpp:304:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:25:21,900     304 |   if (&(name) == NULL)
2023-09-08T16:25:21,901         |               ^
2023-09-08T16:25:21,901   ./base/sbml/packages/qual/sbml/Output.cpp:302:36: note: ‘name’ declared here
2023-09-08T16:25:21,902     302 | Output::setName(const std::string& name)
2023-09-08T16:25:21,903         |                 ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:21,934   ./base/sbml/packages/qual/sbml/Output.cpp: At global scope:
2023-09-08T16:25:21,934   ./base/sbml/packages/qual/sbml/Output.cpp:873:29: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:21,935     873 | struct IdEqQS : public std::unary_function<SBase*, bool>
2023-09-08T16:25:21,936         |                             ^~~~~~~~~~~~~~
2023-09-08T16:25:21,937   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:21,937     117 |     struct unary_function
2023-09-08T16:25:21,938         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:22,543   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setName(const std::string&)’:
2023-09-08T16:25:22,543   ./base/sbml/packages/qual/sbml/Output.cpp:304:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:22,543     304 |   if (&(name) == NULL)
2023-09-08T16:25:22,544         |   ^~
2023-09-08T16:25:22,560   ./base/sbml/packages/qual/sbml/Output.cpp: In copy constructor ‘Output::Output(const Output&)’:
2023-09-08T16:25:22,565   ./base/sbml/packages/qual/sbml/Output.cpp:89:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:22,566      89 |   if (&orig == NULL)
2023-09-08T16:25:22,566         |   ^~
2023-09-08T16:25:22,567   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘Output& Output::operator=(const Output&)’:
2023-09-08T16:25:22,567   ./base/sbml/packages/qual/sbml/Output.cpp:111:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:22,568     111 |   if (&rhs == NULL)
2023-09-08T16:25:22,568         |   ^~
2023-09-08T16:25:22,569   ./base/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual int Output::setQualitativeSpecies(const std::string&)’:
2023-09-08T16:25:22,569   ./base/sbml/packages/qual/sbml/Output.cpp:263:3: warning: ‘nonnull’ argument ‘qualitativeSpecies’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:22,570     263 |   if (&(qualitativeSpecies) == NULL)
2023-09-08T16:25:22,570         |   ^~
2023-09-08T16:25:29,136   In file included from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:69,
2023-09-08T16:25:29,137                    from ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:35:
2023-09-08T16:25:29,138   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:29,138      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:29,139         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:29,140   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:29,141                    from ./base//sbml/packages/qual/sbml/QualitativeSpecies.h:65:
2023-09-08T16:25:29,141   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:29,142     117 |     struct unary_function
2023-09-08T16:25:29,143         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:29,866   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T16:25:29,867   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:25:29,868      95 |   if (&orig == NULL)
2023-09-08T16:25:29,868         |             ^
2023-09-08T16:25:29,869   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:92:67: note: ‘orig’ declared here
2023-09-08T16:25:29,870      92 | QualitativeSpecies::QualitativeSpecies (const QualitativeSpecies& orig)
2023-09-08T16:25:29,870         |                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:29,871   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T16:25:29,872   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:25:29,873     120 |   if (&rhs == NULL)
2023-09-08T16:25:29,873         |            ^
2023-09-08T16:25:29,874   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:118:57: note: ‘rhs’ declared here
2023-09-08T16:25:29,875     118 | QualitativeSpecies::operator=(const QualitativeSpecies& rhs)
2023-09-08T16:25:29,876         |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:25:29,877   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T16:25:29,878   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:22: warning: the compiler can assume that the address of ‘compartment’ will never be NULL [-Waddress]
2023-09-08T16:25:29,878     295 |   if (&(compartment) == NULL)
2023-09-08T16:25:29,879         |                      ^
2023-09-08T16:25:29,879   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:293:55: note: ‘compartment’ declared here
2023-09-08T16:25:29,880     293 | QualitativeSpecies::setCompartment(const std::string& compartment)
2023-09-08T16:25:29,880         |                                    ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
2023-09-08T16:25:29,881   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setName(const std::string&)’:
2023-09-08T16:25:29,881   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:25:29,882     329 |   if (&(name) == NULL)
2023-09-08T16:25:29,883         |               ^
2023-09-08T16:25:29,883   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:327:48: note: ‘name’ declared here
2023-09-08T16:25:29,884     327 | QualitativeSpecies::setName(const std::string& name)
2023-09-08T16:25:29,884         |                             ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:30,521   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:329:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:30,522     329 |   if (&(name) == NULL)
2023-09-08T16:25:30,522         |   ^~
2023-09-08T16:25:30,537   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In copy constructor ‘QualitativeSpecies::QualitativeSpecies(const QualitativeSpecies&)’:
2023-09-08T16:25:30,538   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:95:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:30,539      95 |   if (&orig == NULL)
2023-09-08T16:25:30,539         |   ^~
2023-09-08T16:25:30,540   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘QualitativeSpecies& QualitativeSpecies::operator=(const QualitativeSpecies&)’:
2023-09-08T16:25:30,541   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:120:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:30,541     120 |   if (&rhs == NULL)
2023-09-08T16:25:30,542         |   ^~
2023-09-08T16:25:30,543   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual int QualitativeSpecies::setCompartment(const std::string&)’:
2023-09-08T16:25:30,543   ./base/sbml/packages/qual/sbml/QualitativeSpecies.cpp:295:3: warning: ‘nonnull’ argument ‘compartment’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:30,544     295 |   if (&(compartment) == NULL)
2023-09-08T16:25:30,545         |   ^~
2023-09-08T16:25:37,226   In file included from ./base//sbml/packages/qual/sbml/Transition.h:72,
2023-09-08T16:25:37,226                    from ./base/sbml/packages/qual/sbml/Transition.cpp:35:
2023-09-08T16:25:37,227   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:37,228      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:37,228         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:37,229   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:37,230                    from ./base//sbml/packages/qual/sbml/Transition.h:68:
2023-09-08T16:25:37,231   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:37,231     117 |     struct unary_function
2023-09-08T16:25:37,232         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:37,974   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T16:25:37,975   ./base/sbml/packages/qual/sbml/Transition.cpp:94:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:25:37,976      94 |   if (&orig == NULL)
2023-09-08T16:25:37,977         |             ^
2023-09-08T16:25:37,977   ./base/sbml/packages/qual/sbml/Transition.cpp:91:43: note: ‘orig’ declared here
2023-09-08T16:25:37,978      91 | Transition::Transition (const Transition& orig)
2023-09-08T16:25:37,979         |                         ~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:37,979   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T16:25:37,980   ./base/sbml/packages/qual/sbml/Transition.cpp:118:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:25:37,980     118 |   if (&rhs == NULL)
2023-09-08T16:25:37,981         |            ^
2023-09-08T16:25:37,982   ./base/sbml/packages/qual/sbml/Transition.cpp:116:41: note: ‘rhs’ declared here
2023-09-08T16:25:37,982     116 | Transition::operator=(const Transition& rhs)
2023-09-08T16:25:37,983         |                       ~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:25:37,987   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual int Transition::setName(const std::string&)’:
2023-09-08T16:25:37,988   ./base/sbml/packages/qual/sbml/Transition.cpp:257:15: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:25:37,988     257 |   if (&(name) == NULL)
2023-09-08T16:25:37,989         |               ^
2023-09-08T16:25:37,990   ./base/sbml/packages/qual/sbml/Transition.cpp:255:40: note: ‘name’ declared here
2023-09-08T16:25:37,991     255 | Transition::setName(const std::string& name)
2023-09-08T16:25:37,992         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:25:38,649   ./base/sbml/packages/qual/sbml/Transition.cpp:257:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:38,649     257 |   if (&(name) == NULL)
2023-09-08T16:25:38,650         |   ^~
2023-09-08T16:25:38,666   ./base/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Transition& Transition::operator=(const Transition&)’:
2023-09-08T16:25:38,667   ./base/sbml/packages/qual/sbml/Transition.cpp:118:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:38,668     118 |   if (&rhs == NULL)
2023-09-08T16:25:38,668         |   ^~
2023-09-08T16:25:38,683   ./base/sbml/packages/qual/sbml/Transition.cpp: In copy constructor ‘Transition::Transition(const Transition&)’:
2023-09-08T16:25:38,684   ./base/sbml/packages/qual/sbml/Transition.cpp:94:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:25:38,685      94 |   if (&orig == NULL)
2023-09-08T16:25:38,685         |   ^~
2023-09-08T16:25:45,482   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:25:45,483                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:25:45,483                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:25:45,484                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37,
2023-09-08T16:25:45,485                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:43:
2023-09-08T16:25:45,485   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:45,486      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:45,487         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:45,488   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:45,488                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T16:25:45,489                    from ./base//sbml/packages/qual/validator/QualConsistencyValidator.h:42,
2023-09-08T16:25:45,490                    from ./base/sbml/packages/qual/validator/QualConsistencyValidator.cpp:37:
2023-09-08T16:25:45,490   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:45,491     117 |     struct unary_function
2023-09-08T16:25:45,491         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:50,759   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:25:50,760                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:25:50,760                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:25:50,761                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37,
2023-09-08T16:25:50,761                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:43:
2023-09-08T16:25:50,762   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:50,762      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:50,763         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:50,764   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:50,764                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T16:25:50,765                    from ./base//sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:42,
2023-09-08T16:25:50,765                    from ./base/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:37:
2023-09-08T16:25:50,766   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:50,767     117 |     struct unary_function
2023-09-08T16:25:50,767         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:54,643   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:25:54,643                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:25:54,644                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:25:54,645                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37,
2023-09-08T16:25:54,645                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:43:
2023-09-08T16:25:54,646   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:54,647      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:54,647         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:54,648   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:54,649                    from ./base//sbml/packages/qual/validator/QualValidator.h:69,
2023-09-08T16:25:54,650                    from ./base//sbml/packages/qual/validator/QualMathConsistencyValidator.h:42,
2023-09-08T16:25:54,650                    from ./base/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:37:
2023-09-08T16:25:54,651   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:54,652     117 |     struct unary_function
2023-09-08T16:25:54,652         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:58,747   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:25:58,748                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:25:58,749                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:25:58,749                    from ./base/sbml/packages/qual/validator/QualValidator.cpp:33:
2023-09-08T16:25:58,750   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:58,751      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:25:58,752         |                           ^~~~~~~~~~~~~~
2023-09-08T16:25:58,753   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:25:58,753                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:25:58,754   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:58,754     117 |     struct unary_function
2023-09-08T16:25:58,755         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:59,457   ./base/sbml/packages/qual/validator/QualValidator.cpp:65:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:25:59,458      65 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T16:25:59,459         |                       ^~~~~~~~~~~~~~
2023-09-08T16:25:59,459   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:25:59,460     117 |     struct unary_function
2023-09-08T16:25:59,460         |            ^~~~~~~~~~~~~~
2023-09-08T16:25:59,654   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T16:25:59,654   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:11: warning: the compiler can assume that the address of ‘x’ will never be NULL [-Waddress]
2023-09-08T16:25:59,655     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T16:25:59,655         |           ^
2023-09-08T16:25:59,656   ./base/sbml/packages/qual/validator/QualValidator.cpp:313:36: note: ‘x’ declared here
2023-09-08T16:25:59,657     313 |   virtual bool visit (const SBase &x)
2023-09-08T16:25:59,657         |                       ~~~~~~~~~~~~~^
2023-09-08T16:25:59,674   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T16:25:59,675   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T16:25:59,675     419 |   if (&d == NULL) return 0;
2023-09-08T16:25:59,676         |          ^
2023-09-08T16:25:59,677   ./base/sbml/packages/qual/validator/QualValidator.cpp:417:46: note: ‘d’ declared here
2023-09-08T16:25:59,677     417 | QualValidator::validate (const SBMLDocument& d)
2023-09-08T16:25:59,678         |                          ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T16:25:59,679   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T16:25:59,680   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T16:25:59,681     449 |   if (&filename == NULL) return 0;
2023-09-08T16:25:59,681         |                 ^
2023-09-08T16:25:59,682   ./base/sbml/packages/qual/validator/QualValidator.cpp:447:45: note: ‘filename’ declared here
2023-09-08T16:25:59,683     447 | QualValidator::validate (const std::string& filename)
2023-09-08T16:25:59,683         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:26:00,600   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const SBMLDocument&)’:
2023-09-08T16:26:00,600   ./base/sbml/packages/qual/validator/QualValidator.cpp:419:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:26:00,601     419 |   if (&d == NULL) return 0;
2023-09-08T16:26:00,602         |   ^~
2023-09-08T16:26:00,616   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual bool QualValidatingVisitor::visit(const SBase&)’:
2023-09-08T16:26:00,616   ./base/sbml/packages/qual/validator/QualValidator.cpp:315:19: warning: ‘nonnull’ argument ‘x’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:26:00,617     315 |     if(&x == NULL || x.getPackageName() != "qual")
2023-09-08T16:26:00,618         |        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:26:00,631   ./base/sbml/packages/qual/validator/QualValidator.cpp: In member function ‘virtual unsigned int QualValidator::validate(const std::string&)’:
2023-09-08T16:26:00,632   ./base/sbml/packages/qual/validator/QualValidator.cpp:449:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:26:00,632     449 |   if (&filename == NULL) return 0;
2023-09-08T16:26:00,633         |   ^~
2023-09-08T16:26:05,036   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:26:05,036                    from ./base//sbml/Model.h:446,
2023-09-08T16:26:05,037                    from ./base/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:37:
2023-09-08T16:26:05,037   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:05,038      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:05,038         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:05,039   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:05,039                    from ./base//sbml/Model.h:444:
2023-09-08T16:26:05,040   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:05,041     117 |     struct unary_function
2023-09-08T16:26:05,041         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:09,562   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:26:09,562                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:26:09,563                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:26:09,564                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:46,
2023-09-08T16:26:09,564                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:36:
2023-09-08T16:26:09,565   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:09,566      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:09,567         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:09,568   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:09,568                    from ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:42:
2023-09-08T16:26:09,569   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:09,570     117 |     struct unary_function
2023-09-08T16:26:09,571         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:10,275   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp: In member function ‘virtual void QualCSymbolMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:26:10,275   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:26:10,276      97 |   if (&(node) == NULL)
2023-09-08T16:26:10,277         |               ^
2023-09-08T16:26:10,277   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:94:65: note: ‘node’ declared here
2023-09-08T16:26:10,278      94 | QualCSymbolMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:26:10,279         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:26:10,786   ./base/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:97:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:26:10,786      97 |   if (&(node) == NULL)
2023-09-08T16:26:10,787         |   ^~
2023-09-08T16:26:13,920   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:26:13,921                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:26:13,922                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:26:13,923                    from ./base/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:37:
2023-09-08T16:26:13,923   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:13,924      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:13,924         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:13,925   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:13,925                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:26:13,926   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:13,926     117 |     struct unary_function
2023-09-08T16:26:13,927         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:17,942   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:26:17,943                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:26:17,943                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:26:17,944                    from ./base/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:37:
2023-09-08T16:26:17,944   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:17,945      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:17,946         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:17,946   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:17,947                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:26:17,948   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:17,948     117 |     struct unary_function
2023-09-08T16:26:17,949         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:21,751   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:26:21,752                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:26:21,753                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:26:21,754                    from ./base/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:37:
2023-09-08T16:26:21,754   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:21,755      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:21,756         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:21,757   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:21,757                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:26:21,758   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:21,759     117 |     struct unary_function
2023-09-08T16:26:21,759         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:25,832   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:26:25,832                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:26:25,833                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:26:25,833                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:46,
2023-09-08T16:26:25,834                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:35:
2023-09-08T16:26:25,835   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:25,836      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:25,836         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:25,837   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:25,838                    from ./base/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:42:
2023-09-08T16:26:25,838   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:25,839     117 |     struct unary_function
2023-09-08T16:26:25,839         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:31,438   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:26:31,439                    from ./base//sbml/Model.h:446,
2023-09-08T16:26:31,439                    from ./base/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:37:
2023-09-08T16:26:31,440   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:31,440      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:31,441         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:31,442   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:31,442                    from ./base//sbml/Model.h:444:
2023-09-08T16:26:31,443   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:31,443     117 |     struct unary_function
2023-09-08T16:26:31,444         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:35,711   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:26:35,712                    from ./base//sbml/Model.h:446,
2023-09-08T16:26:35,712                    from ./base/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:37:
2023-09-08T16:26:35,713   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:35,714      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:35,714         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:35,715   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:35,716                    from ./base//sbml/Model.h:444:
2023-09-08T16:26:35,717   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:35,718     117 |     struct unary_function
2023-09-08T16:26:35,718         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:39,973   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:26:39,974                    from ./base//sbml/Model.h:446,
2023-09-08T16:26:39,975                    from ./base/sbml/units/FormulaUnitsData.cpp:37:
2023-09-08T16:26:39,975   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:39,976      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:39,977         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:39,977   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:39,978                    from ./base//sbml/Model.h:444:
2023-09-08T16:26:39,979   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:39,979     117 |     struct unary_function
2023-09-08T16:26:39,980         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:40,435   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T16:26:40,435   ./base/sbml/units/FormulaUnitsData.cpp:74:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:26:40,436      74 |   if (&orig == NULL)
2023-09-08T16:26:40,437         |             ^
2023-09-08T16:26:40,438   ./base/sbml/units/FormulaUnitsData.cpp:72:60: note: ‘orig’ declared here
2023-09-08T16:26:40,438      72 | FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData& orig)
2023-09-08T16:26:40,439         |                                    ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:26:40,441   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T16:26:40,442   ./base/sbml/units/FormulaUnitsData.cpp:138:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:26:40,443     138 |   if (&rhs == NULL)
2023-09-08T16:26:40,443         |            ^
2023-09-08T16:26:40,443   ./base/sbml/units/FormulaUnitsData.cpp:136:71: note: ‘rhs’ declared here
2023-09-08T16:26:40,444     136 | FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData& rhs)
2023-09-08T16:26:40,444         |                                               ~~~~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:26:40,931   ./base/sbml/units/FormulaUnitsData.cpp: In copy constructor ‘FormulaUnitsData::FormulaUnitsData(const FormulaUnitsData&)’:
2023-09-08T16:26:40,932   ./base/sbml/units/FormulaUnitsData.cpp:74:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:26:40,932      74 |   if (&orig == NULL)
2023-09-08T16:26:40,933         |   ^~
2023-09-08T16:26:40,934   ./base/sbml/units/FormulaUnitsData.cpp: In member function ‘FormulaUnitsData& FormulaUnitsData::operator=(const FormulaUnitsData&)’:
2023-09-08T16:26:40,934   ./base/sbml/units/FormulaUnitsData.cpp:138:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:26:40,935     138 |   if (&rhs == NULL)
2023-09-08T16:26:40,935         |   ^~
2023-09-08T16:26:44,059   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:26:44,060                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:26:44,060                    from ./base/sbml/units/UnitFormulaFormatter.cpp:35:
2023-09-08T16:26:44,061   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:26:44,062      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:26:44,063         |                           ^~~~~~~~~~~~~~
2023-09-08T16:26:44,063   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:26:44,064                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:26:44,065   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:26:44,066     117 |     struct unary_function
2023-09-08T16:26:44,066         |            ^~~~~~~~~~~~~~
2023-09-08T16:26:56,007   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T16:26:56,008   ./base/sbml/util/IdList.cpp:50:23: warning: the compiler can assume that the address of ‘commaSeparated’ will never be NULL [-Waddress]
2023-09-08T16:26:56,008      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T16:26:56,009         |                       ^
2023-09-08T16:26:56,010   ./base/sbml/util/IdList.cpp:48:35: note: ‘commaSeparated’ declared here
2023-09-08T16:26:56,011      48 | IdList::IdList(const std::string& commaSeparated)
2023-09-08T16:26:56,011         |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
2023-09-08T16:26:56,313   ./base/sbml/util/IdList.cpp: In constructor ‘IdList::IdList(const std::string&)’:
2023-09-08T16:26:56,314   ./base/sbml/util/IdList.cpp:50:31: warning: ‘nonnull’ argument ‘commaSeparated’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:26:56,314      50 |   if (&commaSeparated == NULL || commaSeparated.size() == 0)
2023-09-08T16:26:56,315         |       ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-09-08T16:27:06,929   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:27:06,929                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:27:06,930                    from ./base/sbml/validator/ConsistencyValidator.cpp:37:
2023-09-08T16:27:06,931   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:06,932      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:06,933         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:06,933   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:06,934                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:27:06,934   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:06,935     117 |     struct unary_function
2023-09-08T16:27:06,935         |            ^~~~~~~~~~~~~~
2023-09-08T16:27:17,192   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:27:17,192                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:27:17,193                    from ./base/sbml/validator/IdentifierConsistencyValidator.cpp:37:
2023-09-08T16:27:17,193   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:17,194      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:17,195         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:17,195   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:17,196                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:27:17,196   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:17,197     117 |     struct unary_function
2023-09-08T16:27:17,197         |            ^~~~~~~~~~~~~~
2023-09-08T16:27:21,925   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:27:21,926                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:27:21,927                    from ./base/sbml/validator/InternalConsistencyValidator.cpp:37:
2023-09-08T16:27:21,927   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:21,928      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:21,929         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:21,930   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:21,930                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:27:21,931   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:21,932     117 |     struct unary_function
2023-09-08T16:27:21,933         |            ^~~~~~~~~~~~~~
2023-09-08T16:27:29,167   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:27:29,167                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:27:29,168                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37,
2023-09-08T16:27:29,169                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:43:
2023-09-08T16:27:29,169   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:29,170      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:29,171         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:29,171   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:29,172                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T16:27:29,173                    from ./base//sbml/validator/L1CompatibilityValidator.h:42,
2023-09-08T16:27:29,173                    from ./base/sbml/validator/L1CompatibilityValidator.cpp:37:
2023-09-08T16:27:29,174   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:29,175     117 |     struct unary_function
2023-09-08T16:27:29,175         |            ^~~~~~~~~~~~~~
2023-09-08T16:27:34,921   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:27:34,922                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:27:34,923                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37,
2023-09-08T16:27:34,923                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:43:
2023-09-08T16:27:34,924   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:34,924      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:34,925         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:34,925   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:34,926                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T16:27:34,926                    from ./base//sbml/validator/L2v1CompatibilityValidator.h:42,
2023-09-08T16:27:34,927                    from ./base/sbml/validator/L2v1CompatibilityValidator.cpp:37:
2023-09-08T16:27:34,927   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:34,928     117 |     struct unary_function
2023-09-08T16:27:34,928         |            ^~~~~~~~~~~~~~
2023-09-08T16:27:40,994   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:27:40,995                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:27:40,995                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37,
2023-09-08T16:27:40,996                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:43:
2023-09-08T16:27:40,997   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:40,997      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:40,998         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:40,998   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:40,999                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T16:27:41,000                    from ./base/sbml/validator/L2v2CompatibilityValidator.h:42,
2023-09-08T16:27:41,001                    from ./base/sbml/validator/L2v2CompatibilityValidator.cpp:37:
2023-09-08T16:27:41,001   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:41,002     117 |     struct unary_function
2023-09-08T16:27:41,003         |            ^~~~~~~~~~~~~~
2023-09-08T16:27:46,780   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:27:46,781                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:27:46,781                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37,
2023-09-08T16:27:46,782                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:43:
2023-09-08T16:27:46,783   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:46,783      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:46,784         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:46,785   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:46,785                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T16:27:46,786                    from ./base/sbml/validator/L2v3CompatibilityValidator.h:42,
2023-09-08T16:27:46,787                    from ./base/sbml/validator/L2v3CompatibilityValidator.cpp:37:
2023-09-08T16:27:46,787   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:46,788     117 |     struct unary_function
2023-09-08T16:27:46,789         |            ^~~~~~~~~~~~~~
2023-09-08T16:27:52,318   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:27:52,319                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:27:52,320                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37,
2023-09-08T16:27:52,321                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:43:
2023-09-08T16:27:52,321   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:52,322      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:52,323         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:52,323   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:52,324                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T16:27:52,325                    from ./base/sbml/validator/L2v4CompatibilityValidator.h:42,
2023-09-08T16:27:52,325                    from ./base/sbml/validator/L2v4CompatibilityValidator.cpp:37:
2023-09-08T16:27:52,326   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:52,326     117 |     struct unary_function
2023-09-08T16:27:52,327         |            ^~~~~~~~~~~~~~
2023-09-08T16:27:57,795   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:27:57,796                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:27:57,796                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:27:57,797                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38,
2023-09-08T16:27:57,797                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:43:
2023-09-08T16:27:57,798   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:27:57,799      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:27:57,799         |                           ^~~~~~~~~~~~~~
2023-09-08T16:27:57,800   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:27:57,800                    from ./base//sbml/validator/Validator.h:69,
2023-09-08T16:27:57,801                    from ./base//sbml/validator/L3v1CompatibilityValidator.h:42,
2023-09-08T16:27:57,802                    from ./base/sbml/validator/L3v1CompatibilityValidator.cpp:37:
2023-09-08T16:27:57,802   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:27:57,803     117 |     struct unary_function
2023-09-08T16:27:57,804         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:02,012   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:28:02,013                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:28:02,013                    from ./base/sbml/validator/MathMLConsistencyValidator.cpp:37:
2023-09-08T16:28:02,014   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:02,015      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:02,016         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:02,016   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:02,017                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:28:02,017   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:02,018     117 |     struct unary_function
2023-09-08T16:28:02,019         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:05,898   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:28:05,899                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:28:05,899                    from ./base/sbml/validator/ModelingPracticeValidator.cpp:37:
2023-09-08T16:28:05,900   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:05,901      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:05,902         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:05,902   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:05,903                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:28:05,904   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:05,905     117 |     struct unary_function
2023-09-08T16:28:05,905         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:09,915   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:28:09,915                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:28:09,916                    from ./base/sbml/validator/OverdeterminedValidator.cpp:37:
2023-09-08T16:28:09,916   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:09,917      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:09,917         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:09,918   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:09,918                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:28:09,919   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:09,919     117 |     struct unary_function
2023-09-08T16:28:09,920         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:14,201   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:28:14,201                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:28:14,202                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:28:14,202                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:28:14,203                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T16:28:14,204                    from ./base//sbml/validator/SBMLExternalValidator.h:43,
2023-09-08T16:28:14,204                    from ./base/sbml/validator/SBMLExternalValidator.cpp:36:
2023-09-08T16:28:14,205   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:14,205      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:14,206         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:14,207   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:14,207                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:28:14,208                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:28:14,209                    from ./base//sbml/validator/SBMLExternalValidator.h:42:
2023-09-08T16:28:14,210   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:14,210     117 |     struct unary_function
2023-09-08T16:28:14,211         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:20,415   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:28:20,416                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:28:20,416                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:28:20,417                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:28:20,417                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T16:28:20,418                    from ./base//sbml/validator/SBMLInternalValidator.h:63,
2023-09-08T16:28:20,419                    from ./base/sbml/validator/SBMLInternalValidator.cpp:34:
2023-09-08T16:28:20,419   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:20,420      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:20,421         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:20,421   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:20,422                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:28:20,423                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:28:20,424                    from ./base//sbml/validator/SBMLInternalValidator.h:62:
2023-09-08T16:28:20,424   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:20,425     117 |     struct unary_function
2023-09-08T16:28:20,426         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:25,132   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:28:25,132                    from ./base//sbml/SBMLTransforms.h:48,
2023-09-08T16:28:25,132                    from ./base//sbml/SBMLDocument.h:291,
2023-09-08T16:28:25,133                    from ./base//sbml/SBMLTypes.h:39,
2023-09-08T16:28:25,134                    from ./base//sbml/validator/SBMLValidator.h:75,
2023-09-08T16:28:25,134                    from ./base/sbml/validator/SBMLValidator.cpp:34:
2023-09-08T16:28:25,135   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:25,135      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:25,136         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:25,136   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:25,137                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:28:25,137                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:28:25,138                    from ./base//sbml/validator/SBMLValidator.h:73:
2023-09-08T16:28:25,138   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:25,139     117 |     struct unary_function
2023-09-08T16:28:25,139         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:25,437   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T16:28:25,438   ./base/sbml/validator/SBMLValidator.cpp:59:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:28:25,439      59 |   if (&orig == NULL)
2023-09-08T16:28:25,439         |             ^
2023-09-08T16:28:25,440   ./base/sbml/validator/SBMLValidator.cpp:56:55: note: ‘orig’ declared here
2023-09-08T16:28:25,441      56 |     SBMLValidator::SBMLValidator(const SBMLValidator& orig) :
2023-09-08T16:28:25,442         |                                  ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:28:25,443   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T16:28:25,443   ./base/sbml/validator/SBMLValidator.cpp:87:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:28:25,444      87 |   if (&rhs == NULL)
2023-09-08T16:28:25,445         |            ^
2023-09-08T16:28:25,446   ./base/sbml/validator/SBMLValidator.cpp:85:47: note: ‘rhs’ declared here
2023-09-08T16:28:25,447      85 | SBMLValidator::operator=(const SBMLValidator& rhs)
2023-09-08T16:28:25,447         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:28:25,448   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T16:28:25,449   ./base/sbml/validator/SBMLValidator.cpp:168:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T16:28:25,449     168 |   if (&msg == NULL) return;
2023-09-08T16:28:25,450         |            ^
2023-09-08T16:28:25,451   ./base/sbml/validator/SBMLValidator.cpp:166:45: note: ‘msg’ declared here
2023-09-08T16:28:25,451     166 | SBMLValidator::logFailure (const SBMLError& msg)
2023-09-08T16:28:25,452         |                            ~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:28:25,453   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T16:28:25,454   ./base/sbml/validator/SBMLValidator.cpp:182:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T16:28:25,454     182 |   if (&filename == NULL) return 0;
2023-09-08T16:28:25,455         |                 ^
2023-09-08T16:28:25,457   ./base/sbml/validator/SBMLValidator.cpp:180:45: note: ‘filename’ declared here
2023-09-08T16:28:25,457     180 | SBMLValidator::validate (const std::string& filename)
2023-09-08T16:28:25,458         |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:28:25,962   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘SBMLValidator& SBMLValidator::operator=(const SBMLValidator&)’:
2023-09-08T16:28:25,963   ./base/sbml/validator/SBMLValidator.cpp:87:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:25,964      87 |   if (&rhs == NULL)
2023-09-08T16:28:25,964         |   ^~
2023-09-08T16:28:25,965   ./base/sbml/validator/SBMLValidator.cpp: In copy constructor ‘SBMLValidator::SBMLValidator(const SBMLValidator&)’:
2023-09-08T16:28:25,966   ./base/sbml/validator/SBMLValidator.cpp:59:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:25,966      59 |   if (&orig == NULL)
2023-09-08T16:28:25,967         |   ^~
2023-09-08T16:28:25,968   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘void SBMLValidator::logFailure(const SBMLError&)’:
2023-09-08T16:28:25,968   ./base/sbml/validator/SBMLValidator.cpp:168:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:25,969     168 |   if (&msg == NULL) return;
2023-09-08T16:28:25,970         |   ^~
2023-09-08T16:28:25,970   ./base/sbml/validator/SBMLValidator.cpp: In member function ‘unsigned int SBMLValidator::validate(const std::string&)’:
2023-09-08T16:28:25,971   ./base/sbml/validator/SBMLValidator.cpp:182:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:25,971     182 |   if (&filename == NULL) return 0;
2023-09-08T16:28:25,972         |   ^~
2023-09-08T16:28:29,128   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:28:29,128                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:28:29,129                    from ./base/sbml/validator/SBOConsistencyValidator.cpp:37:
2023-09-08T16:28:29,130   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:29,130      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:29,131         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:29,132   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:29,133                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:28:29,133   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:29,134     117 |     struct unary_function
2023-09-08T16:28:29,135         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:36,290   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:28:36,291                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:28:36,291                    from ./base/sbml/validator/UnitConsistencyValidator.cpp:37:
2023-09-08T16:28:36,292   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:36,293      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:36,293         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:36,294   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:36,295                    from ./base//sbml/UnitDefinition.h:253:
2023-09-08T16:28:36,295   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:36,296     117 |     struct unary_function
2023-09-08T16:28:36,297         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:45,527   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:28:45,527                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:28:45,528                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:28:45,529                    from ./base/sbml/validator/VConstraint.cpp:33:
2023-09-08T16:28:45,530   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:45,530      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:45,531         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:45,531   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:45,532                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:28:45,532   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:45,533     117 |     struct unary_function
2023-09-08T16:28:45,533         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:46,052   ./base/sbml/validator/VConstraint.cpp: In member function ‘void VConstraint::logFailure(const SBase&, const std::string&)’:
2023-09-08T16:28:46,052   ./base/sbml/validator/VConstraint.cpp:99:15: warning: the compiler can assume that the address of ‘object’ will never be NULL [-Waddress]
2023-09-08T16:28:46,053      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T16:28:46,053         |               ^
2023-09-08T16:28:46,054   ./base/sbml/validator/VConstraint.cpp:97:39: note: ‘object’ declared here
2023-09-08T16:28:46,055      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T16:28:46,055         |                          ~~~~~~~~~~~~~^~~~~~
2023-09-08T16:28:46,056   ./base/sbml/validator/VConstraint.cpp:99:35: warning: the compiler can assume that the address of ‘message’ will never be NULL [-Waddress]
2023-09-08T16:28:46,056      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T16:28:46,057         |                                   ^
2023-09-08T16:28:46,058   ./base/sbml/validator/VConstraint.cpp:97:66: note: ‘message’ declared here
2023-09-08T16:28:46,059      97 | VConstraint::logFailure (const SBase& object, const std::string& message)
2023-09-08T16:28:46,059         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:28:46,507   ./base/sbml/validator/VConstraint.cpp:99:15: warning: ‘nonnull’ argument ‘object’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:46,507      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T16:28:46,508         |               ^
2023-09-08T16:28:46,509   ./base/sbml/validator/VConstraint.cpp:99:35: warning: ‘nonnull’ argument ‘message’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:46,510      99 |   if (&object == NULL || &message == NULL) return;
2023-09-08T16:28:46,511         |                                   ^
2023-09-08T16:28:49,415   In file included from ./base//sbml/units/FormulaUnitsData.h:79,
2023-09-08T16:28:49,416                    from ./base/sbml/validator/Validator.cpp:39:
2023-09-08T16:28:49,416   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:49,417      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:49,418         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:49,418   In file included from /usr/include/c++/12/functional:49,
2023-09-08T16:28:49,419                    from ./base/sbml/validator/Validator.cpp:34:
2023-09-08T16:28:49,420   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:49,420     117 |     struct unary_function
2023-09-08T16:28:49,421         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:50,084   ./base/sbml/validator/Validator.cpp:78:23: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:50,085      78 | struct Apply : public unary_function<TConstraint<T>*, void>
2023-09-08T16:28:50,086         |                       ^~~~~~~~~~~~~~
2023-09-08T16:28:50,087   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:50,087     117 |     struct unary_function
2023-09-08T16:28:50,088         |            ^~~~~~~~~~~~~~
2023-09-08T16:28:50,559   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T16:28:50,560   ./base/sbml/validator/Validator.cpp:709:12: warning: the compiler can assume that the address of ‘msg’ will never be NULL [-Waddress]
2023-09-08T16:28:50,560     709 |   if (&msg == NULL) return;
2023-09-08T16:28:50,561         |            ^
2023-09-08T16:28:50,561   ./base/sbml/validator/Validator.cpp:707:41: note: ‘msg’ declared here
2023-09-08T16:28:50,562     707 | Validator::logFailure (const SBMLError& msg)
2023-09-08T16:28:50,562         |                        ~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:28:50,564   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T16:28:50,565   ./base/sbml/validator/Validator.cpp:754:10: warning: the compiler can assume that the address of ‘d’ will never be NULL [-Waddress]
2023-09-08T16:28:50,565     754 |   if (&d == NULL) return 0;
2023-09-08T16:28:50,566         |          ^
2023-09-08T16:28:50,566   ./base/sbml/validator/Validator.cpp:752:42: note: ‘d’ declared here
2023-09-08T16:28:50,567     752 | Validator::validate (const SBMLDocument& d)
2023-09-08T16:28:50,567         |                      ~~~~~~~~~~~~~~~~~~~~^
2023-09-08T16:28:50,574   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T16:28:50,574   ./base/sbml/validator/Validator.cpp:815:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T16:28:50,575     815 |   if (&filename == NULL) return 0;
2023-09-08T16:28:50,576         |                 ^
2023-09-08T16:28:50,576   ./base/sbml/validator/Validator.cpp:813:41: note: ‘filename’ declared here
2023-09-08T16:28:50,577     813 | Validator::validate (const std::string& filename)
2023-09-08T16:28:50,577         |                      ~~~~~~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:28:52,090   ./base/sbml/validator/Validator.cpp: In member function ‘void Validator::logFailure(const SBMLError&)’:
2023-09-08T16:28:52,091   ./base/sbml/validator/Validator.cpp:709:3: warning: ‘nonnull’ argument ‘msg’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:52,091     709 |   if (&msg == NULL) return;
2023-09-08T16:28:52,092         |   ^~
2023-09-08T16:28:52,114   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const SBMLDocument&)’:
2023-09-08T16:28:52,115   ./base/sbml/validator/Validator.cpp:754:3: warning: ‘nonnull’ argument ‘d’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:52,115     754 |   if (&d == NULL) return 0;
2023-09-08T16:28:52,116         |   ^~
2023-09-08T16:28:52,117   ./base/sbml/validator/Validator.cpp: In member function ‘virtual unsigned int Validator::validate(const std::string&)’:
2023-09-08T16:28:52,117   ./base/sbml/validator/Validator.cpp:815:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:28:52,118     815 |   if (&filename == NULL) return 0;
2023-09-08T16:28:52,119         |   ^~
2023-09-08T16:28:58,715   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:28:58,715                    from ./base//sbml/Model.h:446,
2023-09-08T16:28:58,716                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:35:
2023-09-08T16:28:58,717   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:28:58,718      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:28:58,718         |                           ^~~~~~~~~~~~~~
2023-09-08T16:28:58,719   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:28:58,720                    from ./base//sbml/Model.h:444:
2023-09-08T16:28:58,720   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:28:58,721     117 |     struct unary_function
2023-09-08T16:28:58,721         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:03,298   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:03,298                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:03,299                    from ./base/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:35:
2023-09-08T16:29:03,299   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:03,300      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:03,300         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:03,301   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:03,302                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:03,302   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:03,303     117 |     struct unary_function
2023-09-08T16:29:03,303         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:07,576   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:07,576                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:07,577                    from ./base/sbml/validator/constraints/AssignmentCycles.cpp:37:
2023-09-08T16:29:07,577   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:07,578      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:07,579         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:07,579   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:07,580                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:07,581   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:07,581     117 |     struct unary_function
2023-09-08T16:29:07,582         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:15,999   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:15,999                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:16,000                    from ./base/sbml/validator/constraints/AssignmentRuleOrdering.cpp:37:
2023-09-08T16:29:16,001   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:16,002      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:16,003         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:16,004   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:16,004                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:16,005   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:16,006     117 |     struct unary_function
2023-09-08T16:29:16,006         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:20,765   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:20,766                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:20,766                    from ./base/sbml/validator/constraints/CiElementMathCheck.cpp:35:
2023-09-08T16:29:20,767   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:20,768      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:20,768         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:20,769   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:20,770                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:20,771   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:20,772     117 |     struct unary_function
2023-09-08T16:29:20,773         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:21,162   ./base/sbml/validator/constraints/CiElementMathCheck.cpp: In member function ‘virtual void CiElementMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:29:21,162   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:29:21,163     104 |   if (&(node) == NULL)
2023-09-08T16:29:21,164         |               ^
2023-09-08T16:29:21,164   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:101:63: note: ‘node’ declared here
2023-09-08T16:29:21,165     101 | CiElementMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:29:21,165         |                                                ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:29:21,662   ./base/sbml/validator/constraints/CiElementMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:29:21,662     104 |   if (&(node) == NULL)
2023-09-08T16:29:21,663         |   ^~
2023-09-08T16:29:25,096   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:25,096                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:25,097                    from ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:35:
2023-09-08T16:29:25,098   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:25,098      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:25,099         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:25,100   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:25,100                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:25,101   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:25,102     117 |     struct unary_function
2023-09-08T16:29:25,103         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:25,513   ./base/sbml/validator/constraints/CompartmentOutsideCycles.cpp:119:31: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:25,513     119 | struct CycleContains : public unary_function<IdList, bool>
2023-09-08T16:29:25,514         |                               ^~~~~~~~~~~~~~
2023-09-08T16:29:25,515   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:25,516     117 |     struct unary_function
2023-09-08T16:29:25,517         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:30,684   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:29:30,685                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:29:30,686                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:29:30,686                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:44:
2023-09-08T16:29:30,687   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:30,688      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:30,688         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:30,689   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:30,690                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:29:30,691                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:29:30,692                    from ./base//sbml/SBO.h:196,
2023-09-08T16:29:30,692                    from ./base/sbml/validator/constraints/ConsistencyConstraints.cpp:43:
2023-09-08T16:29:30,693   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:30,694     117 |     struct unary_function
2023-09-08T16:29:30,695         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:34,837   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:34,838                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:34,838                    from ./base/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:35:
2023-09-08T16:29:34,839   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:34,839      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:34,840         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:34,841   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:34,841                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:34,842   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:34,843     117 |     struct unary_function
2023-09-08T16:29:34,843         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:39,536   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:39,537                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:39,538                    from ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:35:
2023-09-08T16:29:39,538   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:39,539      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:39,539         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:39,540   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:39,540                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:39,541   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:39,542     117 |     struct unary_function
2023-09-08T16:29:39,542         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:39,935   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp: In member function ‘virtual void EqualityArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:29:39,935   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:29:39,936     101 |   if (&(node) == NULL)
2023-09-08T16:29:39,937         |               ^
2023-09-08T16:29:39,938   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:98:66: note: ‘node’ declared here
2023-09-08T16:29:39,939      98 | EqualityArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:29:39,940         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:29:40,421   ./base/sbml/validator/constraints/EqualityArgsMathCheck.cpp:101:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:29:40,421     101 |   if (&(node) == NULL)
2023-09-08T16:29:40,422         |   ^~
2023-09-08T16:29:43,931   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:43,932                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:43,933                    from ./base/sbml/validator/constraints/ExponentUnitsCheck.cpp:35:
2023-09-08T16:29:43,933   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:43,934      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:43,935         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:43,935   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:43,936                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:43,937   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:43,938     117 |     struct unary_function
2023-09-08T16:29:43,938         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:48,316   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:48,316                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:48,317                    from ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:35:
2023-09-08T16:29:48,318   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:48,318      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:48,319         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:48,319   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:48,320                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:48,320   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:48,321     117 |     struct unary_function
2023-09-08T16:29:48,321         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:48,718   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp: In member function ‘virtual void FunctionApplyMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:29:48,718   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:29:48,719     103 |   if (&(node) == NULL)
2023-09-08T16:29:48,719         |               ^
2023-09-08T16:29:48,720   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:100:67: note: ‘node’ declared here
2023-09-08T16:29:48,721     100 | FunctionApplyMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:29:48,721         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:29:49,213   ./base/sbml/validator/constraints/FunctionApplyMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:29:49,214     103 |   if (&(node) == NULL)
2023-09-08T16:29:49,215         |   ^~
2023-09-08T16:29:52,523   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:52,524                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:52,525                    from ./base/sbml/validator/constraints/FunctionDefinitionVars.cpp:35:
2023-09-08T16:29:52,525   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:52,526      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:52,527         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:52,528   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:52,528                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:52,529   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:52,529     117 |     struct unary_function
2023-09-08T16:29:52,530         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:56,593   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:29:56,593                    from ./base//sbml/Model.h:446,
2023-09-08T16:29:56,593                    from ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:35:
2023-09-08T16:29:56,594   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:29:56,595      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:29:56,595         |                           ^~~~~~~~~~~~~~
2023-09-08T16:29:56,596   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:29:56,597                    from ./base//sbml/Model.h:444:
2023-09-08T16:29:56,598   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:29:56,598     117 |     struct unary_function
2023-09-08T16:29:56,599         |            ^~~~~~~~~~~~~~
2023-09-08T16:29:56,994   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp: In member function ‘virtual void FunctionNoArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:29:56,995   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:29:56,995     104 |   if (&(node) == NULL)
2023-09-08T16:29:56,996         |               ^
2023-09-08T16:29:56,996   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T16:29:56,997     101 | FunctionNoArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:29:56,997         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:29:57,492   ./base/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:29:57,492     104 |   if (&(node) == NULL)
2023-09-08T16:29:57,493         |   ^~
2023-09-08T16:30:00,884   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:30:00,885                    from ./base//sbml/Model.h:446,
2023-09-08T16:30:00,885                    from ./base/sbml/validator/constraints/FunctionReferredToExists.cpp:35:
2023-09-08T16:30:00,886   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:00,887      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:00,887         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:00,888   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:00,889                    from ./base//sbml/Model.h:444:
2023-09-08T16:30:00,889   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:00,890     117 |     struct unary_function
2023-09-08T16:30:00,891         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:05,144   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:30:05,145                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:30:05,146                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:30:05,147                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T16:30:05,147                    from ./base/sbml/validator/constraints/IdBase.cpp:35:
2023-09-08T16:30:05,148   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:05,149      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:05,150         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:05,150   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:05,151                    from ./base/sbml/validator/constraints/IdBase.h:42:
2023-09-08T16:30:05,152   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:05,152     117 |     struct unary_function
2023-09-08T16:30:05,153         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:09,198   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:30:09,199                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:30:09,200                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:30:09,200                    from ./base/sbml/validator/constraints/IdentifierConsistencyConstraints.cpp:37:
2023-09-08T16:30:09,201   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:09,202      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:09,202         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:09,203   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:09,204                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:30:09,204   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:09,205     117 |     struct unary_function
2023-09-08T16:30:09,205         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:13,300   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:30:13,300                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:30:13,301                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:30:13,301                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:42:
2023-09-08T16:30:13,302   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:13,302      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:13,303         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:13,303   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:13,304                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:30:13,305                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:30:13,305                    from ./base//sbml/SBO.h:196,
2023-09-08T16:30:13,306                    from ./base/sbml/validator/constraints/InternalConsistencyConstraints.cpp:41:
2023-09-08T16:30:13,306   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:13,307     117 |     struct unary_function
2023-09-08T16:30:13,307         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:17,231   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:30:17,231                    from ./base//sbml/Model.h:446,
2023-09-08T16:30:17,232                    from ./base/sbml/validator/constraints/KineticLawUnitsCheck.cpp:35:
2023-09-08T16:30:17,233   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:17,233      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:17,234         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:17,235   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:17,236                    from ./base//sbml/Model.h:444:
2023-09-08T16:30:17,236   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:17,237     117 |     struct unary_function
2023-09-08T16:30:17,238         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:22,151   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:30:22,152                    from ./base//sbml/Model.h:446,
2023-09-08T16:30:22,152                    from ./base/sbml/validator/constraints/KineticLawVars.cpp:35:
2023-09-08T16:30:22,153   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:22,154      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:22,154         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:22,155   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:22,156                    from ./base//sbml/Model.h:444:
2023-09-08T16:30:22,156   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:22,157     117 |     struct unary_function
2023-09-08T16:30:22,158         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:26,562   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:30:26,562                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:30:26,563                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:37:
2023-09-08T16:30:26,563   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:26,564      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:26,565         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:26,566   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:26,566                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:30:26,567                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:30:26,567                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:30:26,568                    from ./base//sbml/SBase.h:145,
2023-09-08T16:30:26,568                    from ./base/sbml/validator/constraints/L1CompatibilityConstraints.cpp:36:
2023-09-08T16:30:26,569   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:26,569     117 |     struct unary_function
2023-09-08T16:30:26,570         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:30,419   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:30:30,420                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:30:30,421                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:37:
2023-09-08T16:30:30,421   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:30,422      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:30,422         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:30,423   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:30,424                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:30:30,424                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:30:30,425                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:30:30,426                    from ./base//sbml/SBase.h:145,
2023-09-08T16:30:30,426                    from ./base/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:36:
2023-09-08T16:30:30,427   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:30,428     117 |     struct unary_function
2023-09-08T16:30:30,429         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:34,296   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:30:34,297                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:30:34,298                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:37:
2023-09-08T16:30:34,298   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:34,299      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:34,300         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:34,301   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:34,301                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:30:34,302                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:30:34,302                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:30:34,303                    from ./base//sbml/SBase.h:145,
2023-09-08T16:30:34,304                    from ./base/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:36:
2023-09-08T16:30:34,304   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:34,305     117 |     struct unary_function
2023-09-08T16:30:34,306         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:38,177   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:30:38,178                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:30:38,178                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:37:
2023-09-08T16:30:38,179   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:38,180      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:38,181         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:38,181   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:38,182                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:30:38,182                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:30:38,183                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:30:38,183                    from ./base//sbml/SBase.h:145,
2023-09-08T16:30:38,184                    from ./base/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:36:
2023-09-08T16:30:38,184   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:38,185     117 |     struct unary_function
2023-09-08T16:30:38,185         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:42,038   In file included from ./base//sbml/Rule.h:140,
2023-09-08T16:30:42,039                    from ./base//sbml/AssignmentRule.h:147,
2023-09-08T16:30:42,039                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:37:
2023-09-08T16:30:42,040   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:42,040      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:42,041         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:42,042   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:42,042                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:30:42,043                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:30:42,044                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:30:42,045                    from ./base//sbml/SBase.h:145,
2023-09-08T16:30:42,045                    from ./base/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:36:
2023-09-08T16:30:42,046   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:42,047     117 |     struct unary_function
2023-09-08T16:30:42,047         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:45,956   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:30:45,956                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:30:45,957                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:30:45,957                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:38:
2023-09-08T16:30:45,958   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:45,959      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:45,959         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:45,960   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:45,961                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:30:45,961                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:30:45,962                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:30:45,963                    from ./base//sbml/SBase.h:145,
2023-09-08T16:30:45,963                    from ./base/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:37:
2023-09-08T16:30:45,964   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:45,965     117 |     struct unary_function
2023-09-08T16:30:45,965         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:49,959   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:30:49,960                    from ./base//sbml/Model.h:446,
2023-09-08T16:30:49,961                    from ./base/sbml/validator/constraints/LambdaMathCheck.cpp:35:
2023-09-08T16:30:49,962   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:49,962      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:49,963         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:49,963   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:49,964                    from ./base//sbml/Model.h:444:
2023-09-08T16:30:49,964   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:49,965     117 |     struct unary_function
2023-09-08T16:30:49,965         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:50,356   ./base/sbml/validator/constraints/LambdaMathCheck.cpp: In member function ‘virtual void LambdaMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:30:50,357   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:30:50,358     104 |   if (&(node) == NULL)
2023-09-08T16:30:50,358         |               ^
2023-09-08T16:30:50,359   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:101:60: note: ‘node’ declared here
2023-09-08T16:30:50,359     101 | LambdaMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:30:50,360         |                                             ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:30:50,840   ./base/sbml/validator/constraints/LambdaMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:30:50,840     104 |   if (&(node) == NULL)
2023-09-08T16:30:50,841         |   ^~
2023-09-08T16:30:54,083   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:30:54,083                    from ./base//sbml/Model.h:446,
2023-09-08T16:30:54,084                    from ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:35:
2023-09-08T16:30:54,084   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:54,085      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:54,086         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:54,087   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:54,087                    from ./base//sbml/Model.h:444:
2023-09-08T16:30:54,088   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:54,089     117 |     struct unary_function
2023-09-08T16:30:54,090         |            ^~~~~~~~~~~~~~
2023-09-08T16:30:54,484   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp: In member function ‘virtual void LocalParameterMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:30:54,485   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:30:54,486     104 |   if (&(node) == NULL)
2023-09-08T16:30:54,486         |               ^
2023-09-08T16:30:54,487   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:101:68: note: ‘node’ declared here
2023-09-08T16:30:54,488     101 | LocalParameterMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:30:54,488         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:30:54,987   ./base/sbml/validator/constraints/LocalParameterMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:30:54,987     104 |   if (&(node) == NULL)
2023-09-08T16:30:54,988         |   ^~
2023-09-08T16:30:58,411   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:30:58,411                    from ./base//sbml/Model.h:446,
2023-09-08T16:30:58,412                    from ./base/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:35:
2023-09-08T16:30:58,413   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:30:58,413      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:30:58,414         |                           ^~~~~~~~~~~~~~
2023-09-08T16:30:58,414   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:30:58,415                    from ./base//sbml/Model.h:444:
2023-09-08T16:30:58,415   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:30:58,416     117 |     struct unary_function
2023-09-08T16:30:58,416         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:03,221   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:03,221                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:03,222                    from ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:35:
2023-09-08T16:31:03,223   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:03,223      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:03,224         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:03,224   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:03,225                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:03,225   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:03,226     117 |     struct unary_function
2023-09-08T16:31:03,226         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:03,618   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp: In member function ‘virtual void LogicalArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:31:03,619   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:31:03,620     100 |   if (&(node) == NULL)
2023-09-08T16:31:03,620         |               ^
2023-09-08T16:31:03,621   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:97:65: note: ‘node’ declared here
2023-09-08T16:31:03,622      97 | LogicalArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:31:03,623         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:31:04,104   ./base/sbml/validator/constraints/LogicalArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:31:04,105     100 |   if (&(node) == NULL)
2023-09-08T16:31:04,106         |   ^~
2023-09-08T16:31:07,352   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:07,352                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:07,353                    from ./base/sbml/validator/constraints/MathMLBase.cpp:35:
2023-09-08T16:31:07,354   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:07,354      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:07,355         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:07,355   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:07,356                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:07,357   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:07,357     117 |     struct unary_function
2023-09-08T16:31:07,358         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:12,039   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:31:12,040                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:31:12,041                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:31:12,042                    from ./base/sbml/validator/constraints/MathMLConsistencyConstraints.cpp:39:
2023-09-08T16:31:12,042   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:12,043      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:12,043         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:12,044   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:12,045                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:31:12,045   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:12,046     117 |     struct unary_function
2023-09-08T16:31:12,046         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:15,833   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:31:15,834                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:31:15,834                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:31:15,835                    from ./base/sbml/validator/constraints/ModelingPracticeConstraints.cpp:36:
2023-09-08T16:31:15,835   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:15,836      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:15,837         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:15,837   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:15,838                    from ./base//sbml/validator/VConstraint.h:47:
2023-09-08T16:31:15,838   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:15,839     117 |     struct unary_function
2023-09-08T16:31:15,840         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:19,775   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:19,776                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:19,777                    from ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:35:
2023-09-08T16:31:19,778   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:19,778      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:19,779         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:19,780   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:19,781                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:19,782   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:19,782     117 |     struct unary_function
2023-09-08T16:31:19,783         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:20,172   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp: In member function ‘virtual void NumberArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:31:20,173   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:31:20,174     100 |   if (&(node) == NULL)
2023-09-08T16:31:20,174         |               ^
2023-09-08T16:31:20,175   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:97:64: note: ‘node’ declared here
2023-09-08T16:31:20,176      97 | NumberArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:31:20,176         |                                                 ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:31:20,674   ./base/sbml/validator/constraints/NumberArgsMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:31:20,675     100 |   if (&(node) == NULL)
2023-09-08T16:31:20,676         |   ^~
2023-09-08T16:31:24,124   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:24,125                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:24,125                    from ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:35:
2023-09-08T16:31:24,126   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:24,126      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:24,127         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:24,127   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:24,128                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:24,128   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:24,129     117 |     struct unary_function
2023-09-08T16:31:24,129         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:24,521   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp: In member function ‘virtual void NumericArgsMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:31:24,522   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:31:24,522     105 |   if (&(node) == NULL)
2023-09-08T16:31:24,523         |               ^
2023-09-08T16:31:24,523   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:102:65: note: ‘node’ declared here
2023-09-08T16:31:24,524     102 | NumericArgsMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:31:24,524         |                                                  ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:31:25,007   ./base/sbml/validator/constraints/NumericArgsMathCheck.cpp:105:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:31:25,008     105 |   if (&(node) == NULL)
2023-09-08T16:31:25,009         |   ^~
2023-09-08T16:31:28,290   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:28,290                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:28,291                    from ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:35:
2023-09-08T16:31:28,291   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:28,292      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:28,293         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:28,294   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:28,295                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:28,295   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:28,296     117 |     struct unary_function
2023-09-08T16:31:28,296         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:28,688   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp: In member function ‘virtual void NumericReturnMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:31:28,689   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:31:28,690     104 |   if (&(node) == NULL)
2023-09-08T16:31:28,690         |               ^
2023-09-08T16:31:28,691   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:101:67: note: ‘node’ declared here
2023-09-08T16:31:28,692     101 | NumericReturnMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:31:28,693         |                                                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:31:29,174   ./base/sbml/validator/constraints/NumericReturnMathCheck.cpp:104:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:31:29,174     104 |   if (&(node) == NULL)
2023-09-08T16:31:29,175         |   ^~
2023-09-08T16:31:32,432   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:32,433                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:32,433                    from ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:35:
2023-09-08T16:31:32,434   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:32,434      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:32,435         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:32,435   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:32,436                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:32,436   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:32,437     117 |     struct unary_function
2023-09-08T16:31:32,437         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:35,035   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp: In member function ‘void OverDeterminedCheck::writeEquationVertexes(const Model&)’:
2023-09-08T16:31:35,036   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:26: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
2023-09-08T16:31:35,036     188 |       sprintf(react, "KL_%u", n);
2023-09-08T16:31:35,037         |                          ^~
2023-09-08T16:31:35,038   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:22: note: directive argument in the range [0, 4294967294]
2023-09-08T16:31:35,038     188 |       sprintf(react, "KL_%u", n);
2023-09-08T16:31:35,039         |                      ^~~~~~~
2023-09-08T16:31:35,040   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:188:14: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
2023-09-08T16:31:35,040     188 |       sprintf(react, "KL_%u", n);
2023-09-08T16:31:35,041         |       ~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T16:31:35,042   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:25: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
2023-09-08T16:31:35,043     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T16:31:35,043         |                         ^~
2023-09-08T16:31:35,044   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:19: note: directive argument in the range [0, 4294967294]
2023-09-08T16:31:35,045     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T16:31:35,046         |                   ^~~~~~~~~
2023-09-08T16:31:35,046   ./base/sbml/validator/constraints/OverDeterminedCheck.cpp:179:12: note: ‘sprintf’ output between 7 and 16 bytes into a destination of size 10
2023-09-08T16:31:35,047     179 |     sprintf(rule, "rule_%u", n);
2023-09-08T16:31:35,048         |     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T16:31:46,370   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:31:46,371                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:31:46,371                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:31:46,372                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:51,
2023-09-08T16:31:46,372                    from ./base/sbml/validator/constraints/OverdeterminedConstraints.cpp:38:
2023-09-08T16:31:46,373   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:46,374      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:46,375         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:46,375   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:46,376                    from ./base/sbml/validator/constraints/OverDeterminedCheck.h:43:
2023-09-08T16:31:46,377   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:46,378     117 |     struct unary_function
2023-09-08T16:31:46,378         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:50,222   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:50,223                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:50,223                    from ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:35:
2023-09-08T16:31:50,224   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:50,224      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:50,225         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:50,225   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:50,226                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:50,226   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:50,226     117 |     struct unary_function
2023-09-08T16:31:50,227         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:50,622   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp: In member function ‘virtual void PieceBooleanMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:31:50,622   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:31:50,623     100 |   if (&(node) == NULL)
2023-09-08T16:31:50,623         |               ^
2023-09-08T16:31:50,624   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:97:66: note: ‘node’ declared here
2023-09-08T16:31:50,625      97 | PieceBooleanMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:31:50,625         |                                                   ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:31:51,111   ./base/sbml/validator/constraints/PieceBooleanMathCheck.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:31:51,112     100 |   if (&(node) == NULL)
2023-09-08T16:31:51,112         |   ^~
2023-09-08T16:31:54,390   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:54,391                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:54,392                    from ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:35:
2023-09-08T16:31:54,392   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:54,393      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:54,394         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:54,395   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:54,395                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:54,396   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:54,396     117 |     struct unary_function
2023-09-08T16:31:54,397         |            ^~~~~~~~~~~~~~
2023-09-08T16:31:54,788   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp: In member function ‘virtual void PiecewiseValueMathCheck::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:31:54,789   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:31:54,790     103 |   if (&(node) == NULL)
2023-09-08T16:31:54,790         |               ^
2023-09-08T16:31:54,791   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:100:68: note: ‘node’ declared here
2023-09-08T16:31:54,792     100 | PiecewiseValueMathCheck::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:31:54,793         |                                                     ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:31:55,278   ./base/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:103:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:31:55,279     103 |   if (&(node) == NULL)
2023-09-08T16:31:55,279         |   ^~
2023-09-08T16:31:58,559   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:31:58,559                    from ./base//sbml/Model.h:446,
2023-09-08T16:31:58,560                    from ./base/sbml/validator/constraints/PowerUnitsCheck.cpp:35:
2023-09-08T16:31:58,561   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:31:58,561      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:31:58,562         |                           ^~~~~~~~~~~~~~
2023-09-08T16:31:58,562   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:31:58,563                    from ./base//sbml/Model.h:444:
2023-09-08T16:31:58,563   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:31:58,564     117 |     struct unary_function
2023-09-08T16:31:58,564         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:03,546   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:32:03,547                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:32:03,548                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:32:03,548                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:41:
2023-09-08T16:32:03,549   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:03,549      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:03,550         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:03,551   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:03,552                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:32:03,552                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:32:03,553                    from ./base//sbml/SBO.h:196,
2023-09-08T16:32:03,554                    from ./base/sbml/validator/constraints/SBOConsistencyConstraints.cpp:40:
2023-09-08T16:32:03,554   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:03,555     117 |     struct unary_function
2023-09-08T16:32:03,556         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:07,537   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:07,538                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:07,539                    from ./base/sbml/validator/constraints/SpeciesReactionOrRule.cpp:37:
2023-09-08T16:32:07,540   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:07,540      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:07,541         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:07,542   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:07,542                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:07,543   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:07,544     117 |     struct unary_function
2023-09-08T16:32:07,544         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:11,980   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:11,980                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:11,981                    from ./base/sbml/validator/constraints/StoichiometryMathVars.cpp:35:
2023-09-08T16:32:11,982   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:11,983      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:11,984         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:11,984   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:11,985                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:11,985   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:11,986     117 |     struct unary_function
2023-09-08T16:32:11,986         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:16,626   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:32:16,627                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:32:16,628                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:32:16,628                    from ./base/sbml/validator/constraints/IdBase.h:43,
2023-09-08T16:32:16,629                    from ./base/sbml/validator/constraints/UniqueIdBase.h:46,
2023-09-08T16:32:16,629                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:37:
2023-09-08T16:32:16,630   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:16,630      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:16,631         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:16,631   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:16,632                    from ./base//sbml/xml/XMLAttributes.h:51,
2023-09-08T16:32:16,632                    from ./base//sbml/annotation/RDFAnnotationParser.h:69,
2023-09-08T16:32:16,633                    from ./base//sbml/annotation/RDFAnnotation.h:36,
2023-09-08T16:32:16,634                    from ./base//sbml/SBase.h:145,
2023-09-08T16:32:16,634                    from ./base/sbml/validator/constraints/UniqueIdBase.cpp:35:
2023-09-08T16:32:16,635   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:16,636     117 |     struct unary_function
2023-09-08T16:32:16,637         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:21,727   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:21,727                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:21,728                    from ./base/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:35:
2023-09-08T16:32:21,729   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:21,730      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:21,730         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:21,731   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:21,732                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:21,733   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:21,733     117 |     struct unary_function
2023-09-08T16:32:21,734         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:25,614   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:25,614                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:25,615                    from ./base/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:35:
2023-09-08T16:32:25,616   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:25,617      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:25,617         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:25,618   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:25,619                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:25,619   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:25,620     117 |     struct unary_function
2023-09-08T16:32:25,621         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:29,542   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:29,542                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:29,543                    from ./base/sbml/validator/constraints/UniqueIdsInModel.cpp:35:
2023-09-08T16:32:29,543   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:29,543      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:29,544         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:29,544   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:29,545                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:29,545   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:29,546     117 |     struct unary_function
2023-09-08T16:32:29,546         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:33,454   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:32:33,455                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:32:33,456                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:32:33,456                    from ./base/sbml/validator/constraints/UniqueMetaId.h:46,
2023-09-08T16:32:33,457                    from ./base/sbml/validator/constraints/UniqueMetaId.cpp:35:
2023-09-08T16:32:33,457   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:33,458      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:33,458         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:33,459   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:33,460                    from ./base/sbml/validator/constraints/UniqueMetaId.h:42:
2023-09-08T16:32:33,461   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:33,461     117 |     struct unary_function
2023-09-08T16:32:33,462         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:38,962   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:38,962                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:38,963                    from ./base/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:37:
2023-09-08T16:32:38,964   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:38,964      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:38,965         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:38,966   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:38,966                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:38,967   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:38,968     117 |     struct unary_function
2023-09-08T16:32:38,968         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:43,536   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:43,537                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:43,538                    from ./base/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:35:
2023-09-08T16:32:43,538   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:43,539      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:43,540         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:43,541   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:43,542                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:43,542   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:43,543     117 |     struct unary_function
2023-09-08T16:32:43,544         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:47,471   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:47,472                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:47,472                    from ./base/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:35:
2023-09-08T16:32:47,473   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:47,473      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:47,474         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:47,474   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:47,475                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:47,475   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:47,476     117 |     struct unary_function
2023-09-08T16:32:47,476         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:51,608   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:51,608                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:51,609                    from ./base/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:35:
2023-09-08T16:32:51,609   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:51,610      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:51,610         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:51,611   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:51,612                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:51,612   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:51,613     117 |     struct unary_function
2023-09-08T16:32:51,614         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:55,770   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:55,771                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:55,772                    from ./base/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:35:
2023-09-08T16:32:55,773   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:55,773      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:55,774         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:55,775   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:55,776                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:55,776   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:55,777     117 |     struct unary_function
2023-09-08T16:32:55,778         |            ^~~~~~~~~~~~~~
2023-09-08T16:32:59,930   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:32:59,931                    from ./base//sbml/Model.h:446,
2023-09-08T16:32:59,931                    from ./base/sbml/validator/constraints/UniqueVarsInRules.cpp:35:
2023-09-08T16:32:59,932   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:32:59,933      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:32:59,933         |                           ^~~~~~~~~~~~~~
2023-09-08T16:32:59,934   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:32:59,935                    from ./base//sbml/Model.h:444:
2023-09-08T16:32:59,936   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:32:59,936     117 |     struct unary_function
2023-09-08T16:32:59,937         |            ^~~~~~~~~~~~~~
2023-09-08T16:33:03,947   In file included from ./base//sbml/UnitDefinition.h:256,
2023-09-08T16:33:03,948                    from ./base//sbml/units/UnitFormulaFormatter.h:56,
2023-09-08T16:33:03,949                    from ./base//sbml/validator/VConstraint.h:51,
2023-09-08T16:33:03,949                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:41:
2023-09-08T16:33:03,950   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:33:03,950      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:33:03,951         |                           ^~~~~~~~~~~~~~
2023-09-08T16:33:03,951   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:33:03,952                    from ./base//sbml/xml/XMLNamespaces.h:70,
2023-09-08T16:33:03,952                    from ./base//sbml/SBMLNamespaces.h:99,
2023-09-08T16:33:03,953                    from ./base//sbml/SBO.h:196,
2023-09-08T16:33:03,953                    from ./base/sbml/validator/constraints/UnitConsistencyConstraints.cpp:40:
2023-09-08T16:33:03,954   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:33:03,954     117 |     struct unary_function
2023-09-08T16:33:03,955         |            ^~~~~~~~~~~~~~
2023-09-08T16:33:08,003   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:33:08,003                    from ./base//sbml/Model.h:446,
2023-09-08T16:33:08,004                    from ./base/sbml/validator/constraints/UnitsBase.cpp:35:
2023-09-08T16:33:08,004   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:33:08,005      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:33:08,006         |                           ^~~~~~~~~~~~~~
2023-09-08T16:33:08,006   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:33:08,007                    from ./base//sbml/Model.h:444:
2023-09-08T16:33:08,008   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:33:08,009     117 |     struct unary_function
2023-09-08T16:33:08,009         |            ^~~~~~~~~~~~~~
2023-09-08T16:33:12,248   In file included from ./base//sbml/FunctionDefinition.h:123,
2023-09-08T16:33:12,249                    from ./base//sbml/Model.h:446,
2023-09-08T16:33:12,250                    from ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:35:
2023-09-08T16:33:12,250   ./base//sbml/ListOf.h:95:27: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:33:12,251      95 | struct IdEq : public std::unary_function<SBase*, bool>
2023-09-08T16:33:12,252         |                           ^~~~~~~~~~~~~~
2023-09-08T16:33:12,252   In file included from /usr/include/c++/12/string:48,
2023-09-08T16:33:12,253                    from ./base//sbml/Model.h:444:
2023-09-08T16:33:12,254   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:33:12,254     117 |     struct unary_function
2023-09-08T16:33:12,255         |            ^~~~~~~~~~~~~~
2023-09-08T16:33:12,650   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp: In member function ‘virtual void ValidCnUnitsValue::checkMath(const Model&, const ASTNode&, const SBase&)’:
2023-09-08T16:33:12,651   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:33:12,651     100 |   if (&(node) == NULL)
2023-09-08T16:33:12,652         |               ^
2023-09-08T16:33:12,653   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:97:62: note: ‘node’ declared here
2023-09-08T16:33:12,654      97 | ValidCnUnitsValue::checkMath (const Model& m, const ASTNode& node, const SBase & sb)
2023-09-08T16:33:12,654         |                                               ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:13,135   ./base/sbml/validator/constraints/ValidCnUnitsValue.cpp:100:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:13,136     100 |   if (&(node) == NULL)
2023-09-08T16:33:13,137         |   ^~
2023-09-08T16:33:26,602   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T16:33:26,602   ./base/sbml/xml/XMLAttributes.cpp:90:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:33:26,603      90 |   if (&orig == NULL)
2023-09-08T16:33:26,603         |             ^
2023-09-08T16:33:26,604   ./base/sbml/xml/XMLAttributes.cpp:88:51: note: ‘orig’ declared here
2023-09-08T16:33:26,604      88 | XMLAttributes::XMLAttributes(const XMLAttributes& orig)
2023-09-08T16:33:26,605         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:26,609   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T16:33:26,610   ./base/sbml/xml/XMLAttributes.cpp:110:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:33:26,611     110 |   if (&rhs == NULL)
2023-09-08T16:33:26,611         |            ^
2023-09-08T16:33:26,612   ./base/sbml/xml/XMLAttributes.cpp:108:47: note: ‘rhs’ declared here
2023-09-08T16:33:26,612     108 | XMLAttributes::operator=(const XMLAttributes& rhs)
2023-09-08T16:33:26,613         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:33:26,614   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T16:33:26,615   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:33:26,615     149 |   if (&name == NULL || &value == NULL
2023-09-08T16:33:26,616         |             ^
2023-09-08T16:33:26,617   ./base/sbml/xml/XMLAttributes.cpp:144:40: note: ‘name’ declared here
2023-09-08T16:33:26,618     144 | XMLAttributes::add (const std::string& name,
2023-09-08T16:33:26,619         |                     ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:26,619   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:33:26,620     149 |   if (&name == NULL || &value == NULL
2023-09-08T16:33:26,621         |                               ^
2023-09-08T16:33:26,622   ./base/sbml/xml/XMLAttributes.cpp:145:40: note: ‘value’ declared here
2023-09-08T16:33:26,622     145 |                     const std::string& value,
2023-09-08T16:33:26,623         |                     ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:26,624   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: the compiler can assume that the address of ‘namespaceURI’ will never be NULL [-Waddress]
2023-09-08T16:33:26,624     150 |                     || &namespaceURI == NULL
2023-09-08T16:33:26,625         |                                      ^
2023-09-08T16:33:26,626   ./base/sbml/xml/XMLAttributes.cpp:146:40: note: ‘namespaceURI’ declared here
2023-09-08T16:33:26,626     146 |                     const std::string& namespaceURI,
2023-09-08T16:33:26,627         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-09-08T16:33:26,628   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T16:33:26,628     151 |                     || &prefix == NULL)
2023-09-08T16:33:26,629         |                                ^
2023-09-08T16:33:26,630   ./base/sbml/xml/XMLAttributes.cpp:147:40: note: ‘prefix’ declared here
2023-09-08T16:33:26,631     147 |                     const std::string& prefix)
2023-09-08T16:33:26,631         |                     ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:26,632   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T16:33:26,633   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:33:26,634     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:33:26,634         |               ^
2023-09-08T16:33:26,635   ./base/sbml/xml/XMLAttributes.cpp:182:39: note: ‘triple’ declared here
2023-09-08T16:33:26,635     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T16:33:26,636         |                      ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:26,636   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:33:26,637     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:33:26,637         |                                 ^
2023-09-08T16:33:26,638   ./base/sbml/xml/XMLAttributes.cpp:182:66: note: ‘value’ declared here
2023-09-08T16:33:26,639     182 | XMLAttributes::add ( const XMLTriple& triple, const std::string& value)
2023-09-08T16:33:26,639         |                                               ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:26,640   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T16:33:26,640   ./base/sbml/xml/XMLAttributes.cpp:279:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:33:26,641     279 |   if (&name == NULL) return -1;
2023-09-08T16:33:26,641         |             ^
2023-09-08T16:33:26,642   ./base/sbml/xml/XMLAttributes.cpp:277:45: note: ‘name’ declared here
2023-09-08T16:33:26,643     277 | XMLAttributes::getIndex (const std::string& name) const
2023-09-08T16:33:26,644         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:26,644   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T16:33:26,645   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:33:26,646     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T16:33:26,647         |             ^
2023-09-08T16:33:26,647   ./base/sbml/xml/XMLAttributes.cpp:297:45: note: ‘name’ declared here
2023-09-08T16:33:26,648     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T16:33:26,649         |                          ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:26,650   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:33:26,650     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T16:33:26,651         |                             ^
2023-09-08T16:33:26,652   ./base/sbml/xml/XMLAttributes.cpp:297:70: note: ‘uri’ declared here
2023-09-08T16:33:26,652     297 | XMLAttributes::getIndex (const std::string& name, const std::string& uri) const
2023-09-08T16:33:26,653         |                                                   ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:33:26,654   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T16:33:26,654   ./base/sbml/xml/XMLAttributes.cpp:318:16: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:33:26,655     318 |   if (&triple  == NULL) return -1;
2023-09-08T16:33:26,656         |                ^
2023-09-08T16:33:26,657   ./base/sbml/xml/XMLAttributes.cpp:316:43: note: ‘triple’ declared here
2023-09-08T16:33:26,658     316 | XMLAttributes::getIndex (const XMLTriple& triple) const
2023-09-08T16:33:26,658         |                          ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:26,660   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,661   ./base/sbml/xml/XMLAttributes.cpp:539:16: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:33:26,661     539 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T16:33:26,662         |                ^
2023-09-08T16:33:26,662   ./base/sbml/xml/XMLAttributes.cpp:527:41: note: ‘value’ declared here
2023-09-08T16:33:26,663     527 |                          , bool&        value
2023-09-08T16:33:26,663         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:26,664   ./base/sbml/xml/XMLAttributes.cpp:558:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:33:26,664     558 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T16:33:26,665         |                                          ^
2023-09-08T16:33:26,666   ./base/sbml/xml/XMLAttributes.cpp:526:47: note: ‘name’ declared here
2023-09-08T16:33:26,666     526 |                          , const std::string& name
2023-09-08T16:33:26,667         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:26,667   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,668   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:33:26,668     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T16:33:26,669         |               ^
2023-09-08T16:33:26,670   ./base/sbml/xml/XMLAttributes.cpp:609:45: note: ‘triple’ declared here
2023-09-08T16:33:26,670     609 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T16:33:26,671         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:26,672   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:33:26,673     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T16:33:26,673         |                                 ^
2023-09-08T16:33:26,674   ./base/sbml/xml/XMLAttributes.cpp:610:45: note: ‘value’ declared here
2023-09-08T16:33:26,675     610 |                          , bool&            value
2023-09-08T16:33:26,676         |                            ~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:26,676   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,677   ./base/sbml/xml/XMLAttributes.cpp:653:17: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:33:26,678     653 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T16:33:26,678         |                 ^
2023-09-08T16:33:26,679   ./base/sbml/xml/XMLAttributes.cpp:641:41: note: ‘value’ declared here
2023-09-08T16:33:26,680     641 |                          , double&      value
2023-09-08T16:33:26,681         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:26,681   ./base/sbml/xml/XMLAttributes.cpp:701:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:33:26,682     701 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T16:33:26,683         |                                          ^
2023-09-08T16:33:26,683   ./base/sbml/xml/XMLAttributes.cpp:640:47: note: ‘name’ declared here
2023-09-08T16:33:26,684     640 |                          , const std::string& name
2023-09-08T16:33:26,685         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:26,686   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,686   ./base/sbml/xml/XMLAttributes.cpp:799:37: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:33:26,687     799 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T16:33:26,687         |                                     ^
2023-09-08T16:33:26,688   ./base/sbml/xml/XMLAttributes.cpp:787:41: note: ‘value’ declared here
2023-09-08T16:33:26,688     787 |                          , long&        value
2023-09-08T16:33:26,689         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:26,689   ./base/sbml/xml/XMLAttributes.cpp:819:42: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:33:26,690     819 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T16:33:26,690         |                                          ^
2023-09-08T16:33:26,691   ./base/sbml/xml/XMLAttributes.cpp:786:65: note: ‘name’ declared here
2023-09-08T16:33:26,691     786 |                                            , const std::string& name
2023-09-08T16:33:26,691         |                                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:26,692   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,693   ./base/sbml/xml/XMLAttributes.cpp:854:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:33:26,693     854 |   if (&triple == NULL) return false;
2023-09-08T16:33:26,694         |               ^
2023-09-08T16:33:26,695   ./base/sbml/xml/XMLAttributes.cpp:847:45: note: ‘triple’ declared here
2023-09-08T16:33:26,695     847 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T16:33:26,696         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:26,697   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,697   ./base/sbml/xml/XMLAttributes.cpp:943:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:33:26,698     943 |   if (&triple == NULL) return false;
2023-09-08T16:33:26,699         |               ^
2023-09-08T16:33:26,700   ./base/sbml/xml/XMLAttributes.cpp:936:45: note: ‘triple’ declared here
2023-09-08T16:33:26,701     936 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T16:33:26,701         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:26,702   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,703   ./base/sbml/xml/XMLAttributes.cpp:1035:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:33:26,704    1035 |   if (&triple == NULL) return false;
2023-09-08T16:33:26,705         |               ^
2023-09-08T16:33:26,706   ./base/sbml/xml/XMLAttributes.cpp:1028:45: note: ‘triple’ declared here
2023-09-08T16:33:26,706    1028 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T16:33:26,707         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:26,708   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,708   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:33:26,709    1089 |   if ( index != -1 && &value != NULL)
2023-09-08T16:33:26,710         |                              ^
2023-09-08T16:33:26,711   ./base/sbml/xml/XMLAttributes.cpp:1081:41: note: ‘value’ declared here
2023-09-08T16:33:26,711    1081 |                          , std::string& value
2023-09-08T16:33:26,712         |                            ~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:26,712   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:33:26,713    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T16:33:26,713         |                                                      ^
2023-09-08T16:33:26,714   ./base/sbml/xml/XMLAttributes.cpp:1080:47: note: ‘name’ declared here
2023-09-08T16:33:26,714    1080 |                          , const std::string& name
2023-09-08T16:33:26,715         |                            ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:26,715   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:26,716   ./base/sbml/xml/XMLAttributes.cpp:1125:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:33:26,717    1125 |   if (&triple == NULL) return false;
2023-09-08T16:33:26,717         |               ^
2023-09-08T16:33:26,718   ./base/sbml/xml/XMLAttributes.cpp:1118:45: note: ‘triple’ declared here
2023-09-08T16:33:26,718    1118 | XMLAttributes::readInto (  const XMLTriple& triple
2023-09-08T16:33:26,719         |                            ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:27,122   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const XMLTriple&) const’:
2023-09-08T16:33:27,123   ./base/sbml/xml/XMLAttributes.cpp:318:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,123     318 |   if (&triple  == NULL) return -1;
2023-09-08T16:33:27,124         |   ^~
2023-09-08T16:33:27,135   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&) const’:
2023-09-08T16:33:27,136   ./base/sbml/xml/XMLAttributes.cpp:279:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,136     279 |   if (&name == NULL) return -1;
2023-09-08T16:33:27,137         |   ^~
2023-09-08T16:33:27,138   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::getIndex(const std::string&, const std::string&) const’:
2023-09-08T16:33:27,139   ./base/sbml/xml/XMLAttributes.cpp:299:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,139     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T16:33:27,140         |             ^
2023-09-08T16:33:27,141   ./base/sbml/xml/XMLAttributes.cpp:299:29: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,141     299 |   if (&name == NULL || &uri == NULL) return -1;
2023-09-08T16:33:27,142         |                             ^
2023-09-08T16:33:27,154   ./base/sbml/xml/XMLAttributes.cpp: In copy constructor ‘XMLAttributes::XMLAttributes(const XMLAttributes&)’:
2023-09-08T16:33:27,155   ./base/sbml/xml/XMLAttributes.cpp:90:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,155      90 |   if (&orig == NULL)
2023-09-08T16:33:27,156         |   ^~
2023-09-08T16:33:27,157   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘XMLAttributes& XMLAttributes::operator=(const XMLAttributes&)’:
2023-09-08T16:33:27,157   ./base/sbml/xml/XMLAttributes.cpp:110:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,158     110 |   if (&rhs == NULL)
2023-09-08T16:33:27,159         |   ^~
2023-09-08T16:33:27,160   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const std::string&, const std::string&, const std::string&, const std::string&)’:
2023-09-08T16:33:27,160   ./base/sbml/xml/XMLAttributes.cpp:149:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,161     149 |   if (&name == NULL || &value == NULL
2023-09-08T16:33:27,162         |             ^
2023-09-08T16:33:27,162   ./base/sbml/xml/XMLAttributes.cpp:149:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,163     149 |   if (&name == NULL || &value == NULL
2023-09-08T16:33:27,163         |                               ^
2023-09-08T16:33:27,164   ./base/sbml/xml/XMLAttributes.cpp:150:38: warning: ‘nonnull’ argument ‘namespaceURI’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,164     150 |                     || &namespaceURI == NULL
2023-09-08T16:33:27,165         |                                      ^
2023-09-08T16:33:27,165   ./base/sbml/xml/XMLAttributes.cpp:151:32: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,166     151 |                     || &prefix == NULL)
2023-09-08T16:33:27,166         |                                ^
2023-09-08T16:33:27,167   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘int XMLAttributes::add(const XMLTriple&, const std::string&)’:
2023-09-08T16:33:27,167   ./base/sbml/xml/XMLAttributes.cpp:184:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,168     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:33:27,168         |               ^
2023-09-08T16:33:27,169   ./base/sbml/xml/XMLAttributes.cpp:184:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,170     184 |   if (&triple == NULL || &value == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:33:27,170         |                                 ^
2023-09-08T16:33:27,171   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,172   ./base/sbml/xml/XMLAttributes.cpp:558:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,173     558 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T16:33:27,174         |                                 ^
2023-09-08T16:33:27,174   ./base/sbml/xml/XMLAttributes.cpp:539:24: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,175     539 |     if (&value != NULL && !trimmed.empty() )
2023-09-08T16:33:27,176         |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T16:33:27,177   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, bool&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,177   ./base/sbml/xml/XMLAttributes.cpp:616:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,178     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T16:33:27,179         |               ^
2023-09-08T16:33:27,180   ./base/sbml/xml/XMLAttributes.cpp:616:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,180     616 |   if (&triple == NULL || &value == NULL) return (int)false;
2023-09-08T16:33:27,181         |                                 ^
2023-09-08T16:33:27,182   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, double&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,183   ./base/sbml/xml/XMLAttributes.cpp:701:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,184     701 |   if ( log != NULL && !assigned && &name != NULL)
2023-09-08T16:33:27,185         |                                 ^
2023-09-08T16:33:27,185   ./base/sbml/xml/XMLAttributes.cpp:653:25: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,186     653 |     if ( &value != NULL && !trimmed.empty() )
2023-09-08T16:33:27,186         |          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T16:33:27,187   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,187   ./base/sbml/xml/XMLAttributes.cpp:819:33: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,188     819 |   if ( log != NULL && !assigned && &name != NULL )
2023-09-08T16:33:27,189         |                                 ^
2023-09-08T16:33:27,189   ./base/sbml/xml/XMLAttributes.cpp:799:27: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,190     799 |     if ( !trimmed.empty() && &value != NULL )
2023-09-08T16:33:27,190         |                           ^
2023-09-08T16:33:27,191   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, long int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,192   ./base/sbml/xml/XMLAttributes.cpp:854:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,192     854 |   if (&triple == NULL) return false;
2023-09-08T16:33:27,193         |   ^~
2023-09-08T16:33:27,193   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,194   ./base/sbml/xml/XMLAttributes.cpp:943:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,195     943 |   if (&triple == NULL) return false;
2023-09-08T16:33:27,195         |   ^~
2023-09-08T16:33:27,196   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, unsigned int&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,197   ./base/sbml/xml/XMLAttributes.cpp:1035:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,198    1035 |   if (&triple == NULL) return false;
2023-09-08T16:33:27,199         |   ^~
2023-09-08T16:33:27,200   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(int, const std::string&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,200   ./base/sbml/xml/XMLAttributes.cpp:1097:54: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,201    1097 |   if ( log != NULL && !assigned && required && &name != NULL )
2023-09-08T16:33:27,202         |                                                      ^
2023-09-08T16:33:27,203   ./base/sbml/xml/XMLAttributes.cpp:1089:30: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,203    1089 |   if ( index != -1 && &value != NULL)
2023-09-08T16:33:27,204         |                              ^
2023-09-08T16:33:27,205   ./base/sbml/xml/XMLAttributes.cpp: In member function ‘bool XMLAttributes::readInto(const XMLTriple&, std::string&, XMLErrorLog*, bool, unsigned int, unsigned int) const’:
2023-09-08T16:33:27,205   ./base/sbml/xml/XMLAttributes.cpp:1125:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:27,206    1125 |   if (&triple == NULL) return false;
2023-09-08T16:33:27,207         |   ^~
2023-09-08T16:33:34,777   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T16:33:34,777   ./base/sbml/xml/XMLError.cpp:349:23: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T16:33:34,778     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T16:33:34,779         |                       ^
2023-09-08T16:33:34,779   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T16:33:34,780     322 |                     , const std::string& details
2023-09-08T16:33:34,780         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:33:34,782   ./base/sbml/xml/XMLError.cpp:382:19: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T16:33:34,782     382 |     if ( &details != NULL && !details.empty() )
2023-09-08T16:33:34,783         |                   ^
2023-09-08T16:33:34,783   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T16:33:34,784     322 |                     , const std::string& details
2023-09-08T16:33:34,784         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:33:34,785   ./base/sbml/xml/XMLError.cpp:403:16: warning: the compiler can assume that the address of ‘details’ will never be NULL [-Waddress]
2023-09-08T16:33:34,786     403 |   if (&details == NULL)
2023-09-08T16:33:34,786         |                ^
2023-09-08T16:33:34,787   ./base/sbml/xml/XMLError.cpp:322:42: note: ‘details’ declared here
2023-09-08T16:33:34,787     322 |                     , const std::string& details
2023-09-08T16:33:34,788         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:33:34,793   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T16:33:34,794   ./base/sbml/xml/XMLError.cpp:428:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:33:34,795     428 |   if (&orig == NULL)
2023-09-08T16:33:34,795         |             ^
2023-09-08T16:33:34,796   ./base/sbml/xml/XMLError.cpp:426:36: note: ‘orig’ declared here
2023-09-08T16:33:34,797     426 | XMLError::XMLError(const XMLError& orig)
2023-09-08T16:33:34,797         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:34,799   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T16:33:34,800   ./base/sbml/xml/XMLError.cpp:455:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:33:34,800     455 |   if (&rhs == NULL)
2023-09-08T16:33:34,801         |            ^
2023-09-08T16:33:34,802   ./base/sbml/xml/XMLError.cpp:453:37: note: ‘rhs’ declared here
2023-09-08T16:33:34,803     453 | XMLError::operator=(const XMLError& rhs)
2023-09-08T16:33:34,803         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T16:33:35,217   ./base/sbml/xml/XMLError.cpp: In copy constructor ‘XMLError::XMLError(const XMLError&)’:
2023-09-08T16:33:35,218   ./base/sbml/xml/XMLError.cpp:428:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:35,218     428 |   if (&orig == NULL)
2023-09-08T16:33:35,219         |   ^~
2023-09-08T16:33:35,220   ./base/sbml/xml/XMLError.cpp: In member function ‘XMLError& XMLError::operator=(const XMLError&)’:
2023-09-08T16:33:35,220   ./base/sbml/xml/XMLError.cpp:455:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:35,221     455 |   if (&rhs == NULL)
2023-09-08T16:33:35,221         |   ^~
2023-09-08T16:33:35,223   ./base/sbml/xml/XMLError.cpp: In constructor ‘XMLError::XMLError(int, const std::string&, unsigned int, unsigned int, unsigned int, unsigned int)’:
2023-09-08T16:33:35,224   ./base/sbml/xml/XMLError.cpp:403:3: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:35,225     403 |   if (&details == NULL)
2023-09-08T16:33:35,226         |   ^~
2023-09-08T16:33:35,226   ./base/sbml/xml/XMLError.cpp:349:31: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:35,227     349 |         if ( &details != NULL && !details.empty() )
2023-09-08T16:33:35,228         |              ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T16:33:35,229   ./base/sbml/xml/XMLError.cpp:382:27: warning: ‘nonnull’ argument ‘details’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:35,229     382 |     if ( &details != NULL && !details.empty() )
2023-09-08T16:33:35,230         |          ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-09-08T16:33:38,344   ./base/sbml/xml/XMLErrorLog.cpp:96:24: warning: ‘template<class _Arg, class _Result> struct std::unary_function’ is deprecated [-Wdeprecated-declarations]
2023-09-08T16:33:38,344      96 | struct Delete : public unary_function<XMLError*, void>
2023-09-08T16:33:38,345         |                        ^~~~~~~~~~~~~~
2023-09-08T16:33:38,346   In file included from /usr/include/c++/12/functional:49,
2023-09-08T16:33:38,346                    from ./base/sbml/xml/XMLErrorLog.cpp:34:
2023-09-08T16:33:38,347   /usr/include/c++/12/bits/stl_function.h:117:12: note: declared here
2023-09-08T16:33:38,347     117 |     struct unary_function
2023-09-08T16:33:38,348         |            ^~~~~~~~~~~~~~
2023-09-08T16:33:38,348   ./base/sbml/xml/XMLErrorLog.cpp: In member function ‘void XMLErrorLog::add(const XMLError&)’:
2023-09-08T16:33:38,349   ./base/sbml/xml/XMLErrorLog.cpp:120:14: warning: the compiler can assume that the address of ‘error’ will never be NULL [-Waddress]
2023-09-08T16:33:38,350     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T16:33:38,350         |              ^
2023-09-08T16:33:38,351   ./base/sbml/xml/XMLErrorLog.cpp:118:35: note: ‘error’ declared here
2023-09-08T16:33:38,352     118 | XMLErrorLog::add (const XMLError& error)
2023-09-08T16:33:38,352         |                   ~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:38,657   ./base/sbml/xml/XMLErrorLog.cpp:120:3: warning: ‘nonnull’ argument ‘error’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:38,658     120 |   if (&error == NULL || mOverriddenSeverity == LIBSBML_OVERRIDE_DONT_LOG) return;
2023-09-08T16:33:38,658         |   ^~
2023-09-08T16:33:40,658   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T16:33:40,658   ./base/sbml/xml/XMLFileBuffer.cpp:57:17: warning: the compiler can assume that the address of ‘filename’ will never be NULL [-Waddress]
2023-09-08T16:33:40,659      57 |   if (&filename == NULL) return;
2023-09-08T16:33:40,660         |                 ^
2023-09-08T16:33:40,660   ./base/sbml/xml/XMLFileBuffer.cpp:53:45: note: ‘filename’ declared here
2023-09-08T16:33:40,661      53 | XMLFileBuffer::XMLFileBuffer (const string& filename)
2023-09-08T16:33:40,662         |                               ~~~~~~~~~~~~~~^~~~~~~~
2023-09-08T16:33:40,855   ./base/sbml/xml/XMLFileBuffer.cpp: In constructor ‘XMLFileBuffer::XMLFileBuffer(const std::string&)’:
2023-09-08T16:33:40,856   ./base/sbml/xml/XMLFileBuffer.cpp:57:3: warning: ‘nonnull’ argument ‘filename’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:40,856      57 |   if (&filename == NULL) return;
2023-09-08T16:33:40,857         |   ^~
2023-09-08T16:33:49,302   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T16:33:49,302   ./base/sbml/xml/XMLNamespaces.cpp:76:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:33:49,303      76 |   if (&orig == NULL)
2023-09-08T16:33:49,304         |             ^
2023-09-08T16:33:49,304   ./base/sbml/xml/XMLNamespaces.cpp:74:51: note: ‘orig’ declared here
2023-09-08T16:33:49,305      74 | XMLNamespaces::XMLNamespaces(const XMLNamespaces& orig)
2023-09-08T16:33:49,306         |                              ~~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:49,308   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T16:33:49,308   ./base/sbml/xml/XMLNamespaces.cpp:93:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:33:49,309      93 |   if (&rhs == NULL)
2023-09-08T16:33:49,310         |            ^
2023-09-08T16:33:49,311   ./base/sbml/xml/XMLNamespaces.cpp:91:47: note: ‘rhs’ declared here
2023-09-08T16:33:49,311      91 | XMLNamespaces::operator=(const XMLNamespaces& rhs)
2023-09-08T16:33:49,312         |                          ~~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:33:49,312   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T16:33:49,313   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:33:49,313     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:33:49,314         |            ^
2023-09-08T16:33:49,315   ./base/sbml/xml/XMLNamespaces.cpp:123:40: note: ‘uri’ declared here
2023-09-08T16:33:49,315     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T16:33:49,316         |                     ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:33:49,316   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T16:33:49,317     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:33:49,317         |                               ^
2023-09-08T16:33:49,318   ./base/sbml/xml/XMLNamespaces.cpp:123:64: note: ‘prefix’ declared here
2023-09-08T16:33:49,318     123 | XMLNamespaces::add (const std::string& uri, const std::string& prefix)
2023-09-08T16:33:49,319         |                                             ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:49,337   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T16:33:49,338   ./base/sbml/xml/XMLNamespaces.cpp:322:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T16:33:49,338     322 |   if (&prefix == NULL) return std::string();
2023-09-08T16:33:49,339         |               ^
2023-09-08T16:33:49,340   ./base/sbml/xml/XMLNamespaces.cpp:320:43: note: ‘prefix’ declared here
2023-09-08T16:33:49,341     320 | XMLNamespaces::getURI (const std::string& prefix) const
2023-09-08T16:33:49,342         |                        ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:49,342   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T16:33:49,343   ./base/sbml/xml/XMLNamespaces.cpp:348:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:33:49,344     348 |   if (&uri == NULL) return false;
2023-09-08T16:33:49,345         |            ^
2023-09-08T16:33:49,345   ./base/sbml/xml/XMLNamespaces.cpp:346:47: note: ‘uri’ declared here
2023-09-08T16:33:49,346     346 | bool XMLNamespaces::hasURI(const std::string& uri) const
2023-09-08T16:33:49,347         |                            ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:33:49,347   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T16:33:49,348   ./base/sbml/xml/XMLNamespaces.cpp:359:15: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T16:33:49,349     359 |   if (&prefix == NULL) return false;
2023-09-08T16:33:49,350         |               ^
2023-09-08T16:33:49,350   ./base/sbml/xml/XMLNamespaces.cpp:357:50: note: ‘prefix’ declared here
2023-09-08T16:33:49,351     357 | bool XMLNamespaces::hasPrefix(const std::string& prefix) const
2023-09-08T16:33:49,352         |                               ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:49,353   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T16:33:49,353   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:33:49,354     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T16:33:49,354         |            ^
2023-09-08T16:33:49,355   ./base/sbml/xml/XMLNamespaces.cpp:368:46: note: ‘uri’ declared here
2023-09-08T16:33:49,355     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T16:33:49,356         |                           ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:33:49,357   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T16:33:49,357     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T16:33:49,358         |                               ^
2023-09-08T16:33:49,358   ./base/sbml/xml/XMLNamespaces.cpp:368:70: note: ‘prefix’ declared here
2023-09-08T16:33:49,359     368 | bool XMLNamespaces::hasNS(const std::string& uri, const std::string& prefix) const
2023-09-08T16:33:49,360         |                                                   ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:49,830   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘std::string XMLNamespaces::getURI(const std::string&) const’:
2023-09-08T16:33:49,831   ./base/sbml/xml/XMLNamespaces.cpp:322:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,831     322 |   if (&prefix == NULL) return std::string();
2023-09-08T16:33:49,832         |   ^~
2023-09-08T16:33:49,833   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasNS(const std::string&, const std::string&) const’:
2023-09-08T16:33:49,834   ./base/sbml/xml/XMLNamespaces.cpp:370:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,834     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T16:33:49,835         |            ^
2023-09-08T16:33:49,836   ./base/sbml/xml/XMLNamespaces.cpp:370:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,837     370 |   if (&uri == NULL || &prefix == NULL) return false;
2023-09-08T16:33:49,837         |                               ^
2023-09-08T16:33:49,838   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasURI(const std::string&) const’:
2023-09-08T16:33:49,839   ./base/sbml/xml/XMLNamespaces.cpp:348:3: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,839     348 |   if (&uri == NULL) return false;
2023-09-08T16:33:49,840         |   ^~
2023-09-08T16:33:49,841   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘bool XMLNamespaces::hasPrefix(const std::string&) const’:
2023-09-08T16:33:49,841   ./base/sbml/xml/XMLNamespaces.cpp:359:3: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,842     359 |   if (&prefix == NULL) return false;
2023-09-08T16:33:49,843         |   ^~
2023-09-08T16:33:49,843   ./base/sbml/xml/XMLNamespaces.cpp: In copy constructor ‘XMLNamespaces::XMLNamespaces(const XMLNamespaces&)’:
2023-09-08T16:33:49,844   ./base/sbml/xml/XMLNamespaces.cpp:76:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,845      76 |   if (&orig == NULL)
2023-09-08T16:33:49,845         |   ^~
2023-09-08T16:33:49,846   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘XMLNamespaces& XMLNamespaces::operator=(const XMLNamespaces&)’:
2023-09-08T16:33:49,847   ./base/sbml/xml/XMLNamespaces.cpp:93:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,848      93 |   if (&rhs == NULL)
2023-09-08T16:33:49,849         |   ^~
2023-09-08T16:33:49,849   ./base/sbml/xml/XMLNamespaces.cpp: In member function ‘int XMLNamespaces::add(const std::string&, const std::string&)’:
2023-09-08T16:33:49,850   ./base/sbml/xml/XMLNamespaces.cpp:125:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,850     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:33:49,851         |            ^
2023-09-08T16:33:49,852   ./base/sbml/xml/XMLNamespaces.cpp:125:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:49,852     125 |   if (&uri == NULL || &prefix == NULL) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:33:49,853         |                               ^
2023-09-08T16:33:54,258   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T16:33:54,258   ./base/sbml/xml/XMLNode.cpp:197:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:33:54,259     197 |   if (&rhs == NULL)
2023-09-08T16:33:54,259         |            ^
2023-09-08T16:33:54,260   ./base/sbml/xml/XMLNode.cpp:195:35: note: ‘rhs’ declared here
2023-09-08T16:33:54,261     195 | XMLNode::operator=(const XMLNode& rhs)
2023-09-08T16:33:54,261         |                    ~~~~~~~~~~~~~~~^~~
2023-09-08T16:33:54,262   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T16:33:54,262   ./base/sbml/xml/XMLNode.cpp:230:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:33:54,263     230 |   if (&(node) == NULL)
2023-09-08T16:33:54,264         |               ^
2023-09-08T16:33:54,264   ./base/sbml/xml/XMLNode.cpp:226:35: note: ‘node’ declared here
2023-09-08T16:33:54,265     226 | XMLNode::addChild (const XMLNode& node)
2023-09-08T16:33:54,266         |                    ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:54,266   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T16:33:54,267   ./base/sbml/xml/XMLNode.cpp:267:15: warning: the compiler can assume that the address of ‘node’ will never be NULL [-Waddress]
2023-09-08T16:33:54,267     267 |   if (&(node) == NULL)
2023-09-08T16:33:54,268         |               ^
2023-09-08T16:33:54,269   ./base/sbml/xml/XMLNode.cpp:263:54: note: ‘node’ declared here
2023-09-08T16:33:54,270     263 | XMLNode::insertChild (unsigned int n, const XMLNode& node)
2023-09-08T16:33:54,270         |                                       ~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:54,274   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T16:33:54,275   ./base/sbml/xml/XMLNode.cpp:413:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:33:54,275     413 |   if (&name == NULL) return -1;
2023-09-08T16:33:54,276         |             ^
2023-09-08T16:33:54,277   ./base/sbml/xml/XMLNode.cpp:411:39: note: ‘name’ declared here
2023-09-08T16:33:54,277     411 | XMLNode::getIndex (const std::string& name) const
2023-09-08T16:33:54,278         |                    ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:33:54,279   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T16:33:54,279   ./base/sbml/xml/XMLNode.cpp:435:14: warning: the compiler can assume that the address of ‘other’ will never be NULL [-Waddress]
2023-09-08T16:33:54,280     435 |   if (&other == NULL) return false;
2023-09-08T16:33:54,281         |              ^
2023-09-08T16:33:54,281   ./base/sbml/xml/XMLNode.cpp:433:32: note: ‘other’ declared here
2023-09-08T16:33:54,282     433 | XMLNode::equals(const XMLNode& other, bool ignoreURI /*=false*/) const
2023-09-08T16:33:54,283         |                 ~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:33:54,287   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T16:33:54,287   ./base/sbml/xml/XMLNode.cpp:507:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:33:54,288     507 |   if (&stream == NULL) return;
2023-09-08T16:33:54,289         |               ^
2023-09-08T16:33:54,289   ./base/sbml/xml/XMLNode.cpp:505:34: note: ‘stream’ declared here
2023-09-08T16:33:54,290     505 | XMLNode::write (XMLOutputStream& stream) const
2023-09-08T16:33:54,290         |                 ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:54,292   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T16:33:54,293   ./base/sbml/xml/XMLNode.cpp:577:15: warning: the compiler can assume that the address of ‘xmlstr’ will never be NULL [-Waddress]
2023-09-08T16:33:54,294     577 |   if (&xmlstr == NULL) return NULL;
2023-09-08T16:33:54,294         |               ^
2023-09-08T16:33:54,295   ./base/sbml/xml/XMLNode.cpp:575:61: note: ‘xmlstr’ declared here
2023-09-08T16:33:54,295     575 | XMLNode* XMLNode::convertStringToXMLNode(const std::string& xmlstr, const XMLNamespaces* xmlns)
2023-09-08T16:33:54,296         |                                          ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:33:54,840   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::getIndex(const std::string&) const’:
2023-09-08T16:33:54,840   ./base/sbml/xml/XMLNode.cpp:413:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:54,841     413 |   if (&name == NULL) return -1;
2023-09-08T16:33:54,841         |   ^~
2023-09-08T16:33:54,842   ./base/sbml/xml/XMLNode.cpp: In member function ‘void XMLNode::write(XMLOutputStream&) const’:
2023-09-08T16:33:54,843   ./base/sbml/xml/XMLNode.cpp:507:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:54,843     507 |   if (&stream == NULL) return;
2023-09-08T16:33:54,844         |   ^~
2023-09-08T16:33:54,860   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::operator=(const XMLNode&)’:
2023-09-08T16:33:54,861   ./base/sbml/xml/XMLNode.cpp:197:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:54,861     197 |   if (&rhs == NULL)
2023-09-08T16:33:54,862         |   ^~
2023-09-08T16:33:54,864   ./base/sbml/xml/XMLNode.cpp: In member function ‘int XMLNode::addChild(const XMLNode&)’:
2023-09-08T16:33:54,864   ./base/sbml/xml/XMLNode.cpp:230:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:54,865     230 |   if (&(node) == NULL)
2023-09-08T16:33:54,866         |   ^~
2023-09-08T16:33:54,867   ./base/sbml/xml/XMLNode.cpp: In member function ‘XMLNode& XMLNode::insertChild(unsigned int, const XMLNode&)’:
2023-09-08T16:33:54,867   ./base/sbml/xml/XMLNode.cpp:267:3: warning: ‘nonnull’ argument ‘node’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:54,868     267 |   if (&(node) == NULL)
2023-09-08T16:33:54,868         |   ^~
2023-09-08T16:33:54,869   ./base/sbml/xml/XMLNode.cpp: In member function ‘bool XMLNode::equals(const XMLNode&, bool) const’:
2023-09-08T16:33:54,870   ./base/sbml/xml/XMLNode.cpp:435:3: warning: ‘nonnull’ argument ‘other’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:54,870     435 |   if (&other == NULL) return false;
2023-09-08T16:33:54,871         |   ^~
2023-09-08T16:33:54,872   ./base/sbml/xml/XMLNode.cpp: In static member function ‘static XMLNode* XMLNode::convertStringToXMLNode(const std::string&, const XMLNamespaces*)’:
2023-09-08T16:33:54,873   ./base/sbml/xml/XMLNode.cpp:577:3: warning: ‘nonnull’ argument ‘xmlstr’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:33:54,874     577 |   if (&xmlstr == NULL) return NULL;
2023-09-08T16:33:54,874         |   ^~
2023-09-08T16:34:01,192   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T16:34:01,193   ./base/sbml/xml/XMLOutputStream.cpp:220:15: warning: the compiler can assume that the address of ‘stream’ will never be NULL [-Waddress]
2023-09-08T16:34:01,193     220 |   if (&stream == NULL)
2023-09-08T16:34:01,194         |               ^
2023-09-08T16:34:01,194   ./base/sbml/xml/XMLOutputStream.cpp:205:57: note: ‘stream’ declared here
2023-09-08T16:34:01,195     205 | XMLOutputStream::XMLOutputStream (  std::ostream&       stream
2023-09-08T16:34:01,195         |                                     ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:01,196   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T16:34:01,197   ./base/sbml/xml/XMLOutputStream.cpp:236:12: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,197     236 |   if(&name == NULL) return;
2023-09-08T16:34:01,198         |            ^
2023-09-08T16:34:01,198   ./base/sbml/xml/XMLOutputStream.cpp:234:49: note: ‘name’ declared here
2023-09-08T16:34:01,199     234 | XMLOutputStream::endElement (const std::string& name, const std::string& prefix)
2023-09-08T16:34:01,199         |                              ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,201   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T16:34:01,201   ./base/sbml/xml/XMLOutputStream.cpp:270:14: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:34:01,202     270 |   if(&triple == NULL) return;
2023-09-08T16:34:01,203         |              ^
2023-09-08T16:34:01,204   ./base/sbml/xml/XMLOutputStream.cpp:268:47: note: ‘triple’ declared here
2023-09-08T16:34:01,204     268 | XMLOutputStream::endElement (const XMLTriple& triple)
2023-09-08T16:34:01,205         |                              ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:01,206   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T16:34:01,207   ./base/sbml/xml/XMLOutputStream.cpp:313:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,208     313 |   if (&name == NULL) return;
2023-09-08T16:34:01,208         |             ^
2023-09-08T16:34:01,209   ./base/sbml/xml/XMLOutputStream.cpp:311:51: note: ‘name’ declared here
2023-09-08T16:34:01,210     311 | XMLOutputStream::startElement (const std::string& name, const std::string& prefix)
2023-09-08T16:34:01,211         |                                ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,211   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T16:34:01,212   ./base/sbml/xml/XMLOutputStream.cpp:344:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:34:01,213     344 |   if (&triple == NULL) return;
2023-09-08T16:34:01,213         |               ^
2023-09-08T16:34:01,214   ./base/sbml/xml/XMLOutputStream.cpp:342:49: note: ‘triple’ declared here
2023-09-08T16:34:01,214     342 | XMLOutputStream::startElement (const XMLTriple& triple)
2023-09-08T16:34:01,215         |                                ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:01,216   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T16:34:01,216   ./base/sbml/xml/XMLOutputStream.cpp:374:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,217     374 |   if (&name == NULL) return;
2023-09-08T16:34:01,218         |             ^
2023-09-08T16:34:01,219   ./base/sbml/xml/XMLOutputStream.cpp:372:54: note: ‘name’ declared here
2023-09-08T16:34:01,220     372 | XMLOutputStream::startEndElement (const std::string& name, const std::string& prefix)
2023-09-08T16:34:01,221         |                                   ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,221   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T16:34:01,222   ./base/sbml/xml/XMLOutputStream.cpp:409:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:34:01,222     409 |   if (&triple == NULL) return;
2023-09-08T16:34:01,223         |               ^
2023-09-08T16:34:01,223   ./base/sbml/xml/XMLOutputStream.cpp:407:52: note: ‘triple’ declared here
2023-09-08T16:34:01,224     407 | XMLOutputStream::startEndElement (const XMLTriple& triple)
2023-09-08T16:34:01,224         |                                   ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:01,225   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T16:34:01,225   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,226     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T16:34:01,227         |              ^
2023-09-08T16:34:01,227   ./base/sbml/xml/XMLOutputStream.cpp:441:53: note: ‘name’ declared here
2023-09-08T16:34:01,228     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T16:34:01,228         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,229   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,230     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T16:34:01,230         |                                ^
2023-09-08T16:34:01,231   ./base/sbml/xml/XMLOutputStream.cpp:441:78: note: ‘value’ declared here
2023-09-08T16:34:01,232     441 | XMLOutputStream::writeAttribute (const std::string& name, const std::string& value)
2023-09-08T16:34:01,232         |                                                           ~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,233   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T16:34:01,234   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,235     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,236         |             ^
2023-09-08T16:34:01,236   ./base/sbml/xml/XMLOutputStream.cpp:532:53: note: ‘name’ declared here
2023-09-08T16:34:01,237     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T16:34:01,238         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,238   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,239     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,240         |                               ^
2023-09-08T16:34:01,240   ./base/sbml/xml/XMLOutputStream.cpp:532:71: note: ‘value’ declared here
2023-09-08T16:34:01,241     532 | XMLOutputStream::writeAttribute (const std::string& name, const bool& value)
2023-09-08T16:34:01,242         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,242   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T16:34:01,243   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:34:01,244     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,245         |               ^
2023-09-08T16:34:01,245   ./base/sbml/xml/XMLOutputStream.cpp:562:51: note: ‘triple’ declared here
2023-09-08T16:34:01,246     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T16:34:01,246         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:01,247   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,247     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,248         |                                 ^
2023-09-08T16:34:01,248   ./base/sbml/xml/XMLOutputStream.cpp:562:71: note: ‘value’ declared here
2023-09-08T16:34:01,249     562 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const bool& value)
2023-09-08T16:34:01,249         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,250   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T16:34:01,251   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,251     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,252         |             ^
2023-09-08T16:34:01,252   ./base/sbml/xml/XMLOutputStream.cpp:577:53: note: ‘name’ declared here
2023-09-08T16:34:01,253     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T16:34:01,254         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,254   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,255     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,256         |                               ^
2023-09-08T16:34:01,257   ./base/sbml/xml/XMLOutputStream.cpp:577:73: note: ‘value’ declared here
2023-09-08T16:34:01,258     577 | XMLOutputStream::writeAttribute (const std::string& name, const double& value)
2023-09-08T16:34:01,258         |                                                           ~~~~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,259   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T16:34:01,260   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,261     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,261         |             ^
2023-09-08T16:34:01,262   ./base/sbml/xml/XMLOutputStream.cpp:618:53: note: ‘name’ declared here
2023-09-08T16:34:01,263     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T16:34:01,263         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,264   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,265     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,265         |                               ^
2023-09-08T16:34:01,266   ./base/sbml/xml/XMLOutputStream.cpp:618:71: note: ‘value’ declared here
2023-09-08T16:34:01,267     618 | XMLOutputStream::writeAttribute (const std::string& name, const long& value)
2023-09-08T16:34:01,267         |                                                           ~~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,268   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T16:34:01,269   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,269     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,270         |             ^
2023-09-08T16:34:01,271   ./base/sbml/xml/XMLOutputStream.cpp:660:53: note: ‘name’ declared here
2023-09-08T16:34:01,271     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T16:34:01,272         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,272   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,273     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,273         |                               ^
2023-09-08T16:34:01,274   ./base/sbml/xml/XMLOutputStream.cpp:660:70: note: ‘value’ declared here
2023-09-08T16:34:01,274     660 | XMLOutputStream::writeAttribute (const std::string& name, const int& value)
2023-09-08T16:34:01,275         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,275   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T16:34:01,276   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:34:01,276     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,277         |               ^
2023-09-08T16:34:01,278   ./base/sbml/xml/XMLOutputStream.cpp:689:51: note: ‘triple’ declared here
2023-09-08T16:34:01,278     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T16:34:01,279         |                                  ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:01,280   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,281     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,281         |                                 ^
2023-09-08T16:34:01,282   ./base/sbml/xml/XMLOutputStream.cpp:689:70: note: ‘value’ declared here
2023-09-08T16:34:01,283     689 | XMLOutputStream::writeAttribute (const XMLTriple& triple, const int& value)
2023-09-08T16:34:01,284         |                                                           ~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,284   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T16:34:01,285   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:01,286     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,287         |             ^
2023-09-08T16:34:01,287   ./base/sbml/xml/XMLOutputStream.cpp:704:53: note: ‘name’ declared here
2023-09-08T16:34:01,288     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T16:34:01,289         |                                  ~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:01,289   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,290     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,291         |                               ^
2023-09-08T16:34:01,291   ./base/sbml/xml/XMLOutputStream.cpp:704:79: note: ‘value’ declared here
2023-09-08T16:34:01,292     704 | XMLOutputStream::writeAttribute (const std::string& name, const unsigned int& value)
2023-09-08T16:34:01,293         |                                                           ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,294   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T16:34:01,294   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:34:01,295     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,296         |               ^
2023-09-08T16:34:01,296   ./base/sbml/xml/XMLOutputStream.cpp:733:57: note: ‘triple’ declared here
2023-09-08T16:34:01,297     733 | XMLOutputStream::writeAttribute (  const XMLTriple&     triple
2023-09-08T16:34:01,297         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:01,298   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: the compiler can assume that the address of ‘value’ will never be NULL [-Waddress]
2023-09-08T16:34:01,298     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,299         |                                 ^
2023-09-08T16:34:01,300   ./base/sbml/xml/XMLOutputStream.cpp:734:57: note: ‘value’ declared here
2023-09-08T16:34:01,300     734 |                                  , const unsigned int&  value )
2023-09-08T16:34:01,301         |                                    ~~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:34:01,745   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const std::string&, const std::string&)’:
2023-09-08T16:34:01,746   ./base/sbml/xml/XMLOutputStream.cpp:236:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,747     236 |   if(&name == NULL) return;
2023-09-08T16:34:01,747         |   ^~
2023-09-08T16:34:01,748   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const std::string&, const std::string&)’:
2023-09-08T16:34:01,748   ./base/sbml/xml/XMLOutputStream.cpp:313:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,749     313 |   if (&name == NULL) return;
2023-09-08T16:34:01,750         |   ^~
2023-09-08T16:34:01,750   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const std::string&, const std::string&)’:
2023-09-08T16:34:01,751   ./base/sbml/xml/XMLOutputStream.cpp:374:3: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,752     374 |   if (&name == NULL) return;
2023-09-08T16:34:01,753         |   ^~
2023-09-08T16:34:01,753   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::endElement(const XMLTriple&)’:
2023-09-08T16:34:01,754   ./base/sbml/xml/XMLOutputStream.cpp:270:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,754     270 |   if(&triple == NULL) return;
2023-09-08T16:34:01,755         |   ^~
2023-09-08T16:34:01,756   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startElement(const XMLTriple&)’:
2023-09-08T16:34:01,756   ./base/sbml/xml/XMLOutputStream.cpp:344:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,757     344 |   if (&triple == NULL) return;
2023-09-08T16:34:01,757         |   ^~
2023-09-08T16:34:01,758   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::startEndElement(const XMLTriple&)’:
2023-09-08T16:34:01,759   ./base/sbml/xml/XMLOutputStream.cpp:409:3: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,760     409 |   if (&triple == NULL) return;
2023-09-08T16:34:01,760         |   ^~
2023-09-08T16:34:01,761   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const bool&)’:
2023-09-08T16:34:01,762   ./base/sbml/xml/XMLOutputStream.cpp:564:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,763     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,764         |               ^
2023-09-08T16:34:01,764   ./base/sbml/xml/XMLOutputStream.cpp:564:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,765     564 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,765         |                                 ^
2023-09-08T16:34:01,766   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const int&)’:
2023-09-08T16:34:01,766   ./base/sbml/xml/XMLOutputStream.cpp:691:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,767     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,767         |               ^
2023-09-08T16:34:01,768   ./base/sbml/xml/XMLOutputStream.cpp:691:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,768     691 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,769         |                                 ^
2023-09-08T16:34:01,770   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const XMLTriple&, const unsigned int&)’:
2023-09-08T16:34:01,770   ./base/sbml/xml/XMLOutputStream.cpp:736:15: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,771     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,771         |               ^
2023-09-08T16:34:01,772   ./base/sbml/xml/XMLOutputStream.cpp:736:33: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,773     736 |   if (&triple == NULL || &value == NULL) return;
2023-09-08T16:34:01,773         |                                 ^
2023-09-08T16:34:01,774   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const std::string&)’:
2023-09-08T16:34:01,775   ./base/sbml/xml/XMLOutputStream.cpp:443:14: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,776     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T16:34:01,776         |              ^
2023-09-08T16:34:01,777   ./base/sbml/xml/XMLOutputStream.cpp:443:32: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,778     443 |   if ( &name == NULL || &value == NULL || value.empty() ) return;
2023-09-08T16:34:01,778         |                                ^
2023-09-08T16:34:01,779   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const bool&)’:
2023-09-08T16:34:01,780   ./base/sbml/xml/XMLOutputStream.cpp:534:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,781     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,781         |             ^
2023-09-08T16:34:01,782   ./base/sbml/xml/XMLOutputStream.cpp:534:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,783     534 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,783         |                               ^
2023-09-08T16:34:01,784   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const double&)’:
2023-09-08T16:34:01,785   ./base/sbml/xml/XMLOutputStream.cpp:579:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,785     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,786         |             ^
2023-09-08T16:34:01,787   ./base/sbml/xml/XMLOutputStream.cpp:579:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,787     579 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,788         |                               ^
2023-09-08T16:34:01,789   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const long int&)’:
2023-09-08T16:34:01,789   ./base/sbml/xml/XMLOutputStream.cpp:620:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,790     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,790         |             ^
2023-09-08T16:34:01,791   ./base/sbml/xml/XMLOutputStream.cpp:620:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,791     620 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,792         |                               ^
2023-09-08T16:34:01,792   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const int&)’:
2023-09-08T16:34:01,793   ./base/sbml/xml/XMLOutputStream.cpp:662:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,794     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,794         |             ^
2023-09-08T16:34:01,795   ./base/sbml/xml/XMLOutputStream.cpp:662:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,795     662 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,796         |                               ^
2023-09-08T16:34:01,796   ./base/sbml/xml/XMLOutputStream.cpp: In member function ‘void XMLOutputStream::writeAttribute(const std::string&, const unsigned int&)’:
2023-09-08T16:34:01,797   ./base/sbml/xml/XMLOutputStream.cpp:706:13: warning: ‘nonnull’ argument ‘name’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,798     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,798         |             ^
2023-09-08T16:34:01,799   ./base/sbml/xml/XMLOutputStream.cpp:706:31: warning: ‘nonnull’ argument ‘value’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,800     706 |   if (&name == NULL || &value == NULL) return;
2023-09-08T16:34:01,800         |                               ^
2023-09-08T16:34:01,801   ./base/sbml/xml/XMLOutputStream.cpp: In constructor ‘XMLOutputStream::XMLOutputStream(std::ostream&, const std::string&, bool, const std::string&, const std::string&)’:
2023-09-08T16:34:01,802   ./base/sbml/xml/XMLOutputStream.cpp:220:3: warning: ‘nonnull’ argument ‘stream’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:01,802     220 |   if (&stream == NULL)
2023-09-08T16:34:01,803         |   ^~
2023-09-08T16:34:08,440   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T16:34:08,441   ./base/sbml/xml/XMLToken.cpp:132:14: warning: the compiler can assume that the address of ‘chars’ will never be NULL [-Waddress]
2023-09-08T16:34:08,442     132 |   if (&chars == NULL)
2023-09-08T16:34:08,443         |              ^
2023-09-08T16:34:08,443   ./base/sbml/xml/XMLToken.cpp:123:43: note: ‘chars’ declared here
2023-09-08T16:34:08,444     123 | XMLToken::XMLToken (  const std::string&  chars
2023-09-08T16:34:08,445         |                       ~~~~~~~~~~~~~~~~~~~~^~~~~
2023-09-08T16:34:08,445   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T16:34:08,446   ./base/sbml/xml/XMLToken.cpp:156:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:34:08,447     156 |   if (&orig == NULL)
2023-09-08T16:34:08,447         |             ^
2023-09-08T16:34:08,448   ./base/sbml/xml/XMLToken.cpp:154:36: note: ‘orig’ declared here
2023-09-08T16:34:08,449     154 | XMLToken::XMLToken(const XMLToken& orig)
2023-09-08T16:34:08,450         |                    ~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:08,451   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T16:34:08,452   ./base/sbml/xml/XMLToken.cpp:195:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:34:08,453     195 |   if (&rhs == NULL)
2023-09-08T16:34:08,453         |            ^
2023-09-08T16:34:08,454   ./base/sbml/xml/XMLToken.cpp:193:37: note: ‘rhs’ declared here
2023-09-08T16:34:08,455     193 | XMLToken::operator=(const XMLToken& rhs)
2023-09-08T16:34:08,455         |                     ~~~~~~~~~~~~~~~~^~~
2023-09-08T16:34:08,456   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T16:34:08,457   ./base/sbml/xml/XMLToken.cpp:312:24: warning: the compiler can assume that the address of ‘attributes’ will never be NULL [-Waddress]
2023-09-08T16:34:08,457     312 |         if(&attributes == NULL)
2023-09-08T16:34:08,458         |                        ^
2023-09-08T16:34:08,459   ./base/sbml/xml/XMLToken.cpp:309:46: note: ‘attributes’ declared here
2023-09-08T16:34:08,459     309 | XMLToken::setAttributes(const XMLAttributes& attributes)
2023-09-08T16:34:08,460         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T16:34:08,464   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T16:34:08,465   ./base/sbml/xml/XMLToken.cpp:783:24: warning: the compiler can assume that the address of ‘namespaces’ will never be NULL [-Waddress]
2023-09-08T16:34:08,465     783 |         if(&namespaces == NULL)
2023-09-08T16:34:08,466         |                        ^
2023-09-08T16:34:08,466   ./base/sbml/xml/XMLToken.cpp:780:46: note: ‘namespaces’ declared here
2023-09-08T16:34:08,467     780 | XMLToken::setNamespaces(const XMLNamespaces& namespaces)
2023-09-08T16:34:08,468         |                         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
2023-09-08T16:34:08,468   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T16:34:08,469   ./base/sbml/xml/XMLToken.cpp:818:12: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:34:08,470     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:34:08,471         |            ^
2023-09-08T16:34:08,471   ./base/sbml/xml/XMLToken.cpp:816:44: note: ‘uri’ declared here
2023-09-08T16:34:08,472     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T16:34:08,473         |                         ~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:34:08,474   ./base/sbml/xml/XMLToken.cpp:818:31: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T16:34:08,474     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:34:08,475         |                               ^
2023-09-08T16:34:08,476   ./base/sbml/xml/XMLToken.cpp:816:68: note: ‘prefix’ declared here
2023-09-08T16:34:08,476     816 | XMLToken::addNamespace (const std::string& uri, const std::string& prefix)
2023-09-08T16:34:08,477         |                                                 ~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:08,478   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T16:34:08,479   ./base/sbml/xml/XMLToken.cpp:1058:20: warning: the compiler can assume that the address of ‘triple’ will never be NULL [-Waddress]
2023-09-08T16:34:08,479    1058 |         if(&triple == NULL)
2023-09-08T16:34:08,480         |                    ^
2023-09-08T16:34:08,481   ./base/sbml/xml/XMLToken.cpp:1055:38: note: ‘triple’ declared here
2023-09-08T16:34:08,482    1055 | XMLToken::setTriple(const XMLTriple& triple)
2023-09-08T16:34:08,482         |                     ~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:08,768   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setAttributes(const XMLAttributes&)’:
2023-09-08T16:34:08,768   ./base/sbml/xml/XMLToken.cpp:312:9: warning: ‘nonnull’ argument ‘attributes’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:08,769     312 |         if(&attributes == NULL)
2023-09-08T16:34:08,770         |         ^~
2023-09-08T16:34:08,770   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setNamespaces(const XMLNamespaces&)’:
2023-09-08T16:34:08,771   ./base/sbml/xml/XMLToken.cpp:783:9: warning: ‘nonnull’ argument ‘namespaces’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:08,771     783 |         if(&namespaces == NULL)
2023-09-08T16:34:08,772         |         ^~
2023-09-08T16:34:08,772   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::addNamespace(const std::string&, const std::string&)’:
2023-09-08T16:34:08,773   ./base/sbml/xml/XMLToken.cpp:818:12: warning: ‘nonnull’ argument ‘uri’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:08,773     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:34:08,774         |            ^
2023-09-08T16:34:08,774   ./base/sbml/xml/XMLToken.cpp:818:31: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:08,775     818 |   if (&uri == NULL || &prefix == NULL ) return LIBSBML_INVALID_OBJECT;
2023-09-08T16:34:08,775         |                               ^
2023-09-08T16:34:08,776   ./base/sbml/xml/XMLToken.cpp: In member function ‘int XMLToken::setTriple(const XMLTriple&)’:
2023-09-08T16:34:08,776   ./base/sbml/xml/XMLToken.cpp:1058:9: warning: ‘nonnull’ argument ‘triple’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:08,777    1058 |         if(&triple == NULL)
2023-09-08T16:34:08,777         |         ^~
2023-09-08T16:34:08,792   ./base/sbml/xml/XMLToken.cpp: In constructor ‘XMLToken::XMLToken(const std::string&, unsigned int, unsigned int)’:
2023-09-08T16:34:08,792   ./base/sbml/xml/XMLToken.cpp:132:3: warning: ‘nonnull’ argument ‘chars’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:08,793     132 |   if (&chars == NULL)
2023-09-08T16:34:08,794         |   ^~
2023-09-08T16:34:08,794   ./base/sbml/xml/XMLToken.cpp: In copy constructor ‘XMLToken::XMLToken(const XMLToken&)’:
2023-09-08T16:34:08,795   ./base/sbml/xml/XMLToken.cpp:156:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:08,796     156 |   if (&orig == NULL)
2023-09-08T16:34:08,797         |   ^~
2023-09-08T16:34:08,798   ./base/sbml/xml/XMLToken.cpp: In member function ‘XMLToken& XMLToken::operator=(const XMLToken&)’:
2023-09-08T16:34:08,798   ./base/sbml/xml/XMLToken.cpp:195:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:08,799     195 |   if (&rhs == NULL)
2023-09-08T16:34:08,800         |   ^~
2023-09-08T16:34:13,118   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T16:34:13,119   ./base/sbml/xml/XMLTokenizer.cpp:188:16: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:34:13,119     188 |   if (&element == NULL) return;
2023-09-08T16:34:13,120         |                ^
2023-09-08T16:34:13,121   ./base/sbml/xml/XMLTokenizer.cpp:186:45: note: ‘element’ declared here
2023-09-08T16:34:13,121     186 | XMLTokenizer::startElement (const XMLToken& element)
2023-09-08T16:34:13,122         |                             ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:34:13,123   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T16:34:13,123   ./base/sbml/xml/XMLTokenizer.cpp:234:21: warning: the compiler can assume that the address of ‘element’ will never be NULL [-Waddress]
2023-09-08T16:34:13,124     234 |   else if (&element != NULL)
2023-09-08T16:34:13,125         |                     ^
2023-09-08T16:34:13,126   ./base/sbml/xml/XMLTokenizer.cpp:220:43: note: ‘element’ declared here
2023-09-08T16:34:13,127     220 | XMLTokenizer::endElement (const XMLToken& element)
2023-09-08T16:34:13,127         |                           ~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:34:13,128   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T16:34:13,128   ./base/sbml/xml/XMLTokenizer.cpp:247:13: warning: the compiler can assume that the address of ‘data’ will never be NULL [-Waddress]
2023-09-08T16:34:13,129     247 |   if (&data == NULL) return;
2023-09-08T16:34:13,130         |             ^
2023-09-08T16:34:13,130   ./base/sbml/xml/XMLTokenizer.cpp:245:43: note: ‘data’ declared here
2023-09-08T16:34:13,131     245 | XMLTokenizer::characters (const XMLToken& data)
2023-09-08T16:34:13,131         |                           ~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:13,457   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::startElement(const XMLToken&)’:
2023-09-08T16:34:13,458   ./base/sbml/xml/XMLTokenizer.cpp:188:3: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:13,458     188 |   if (&element == NULL) return;
2023-09-08T16:34:13,459         |   ^~
2023-09-08T16:34:13,459   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::endElement(const XMLToken&)’:
2023-09-08T16:34:13,460   ./base/sbml/xml/XMLTokenizer.cpp:234:8: warning: ‘nonnull’ argument ‘element’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:13,461     234 |   else if (&element != NULL)
2023-09-08T16:34:13,461         |        ^~
2023-09-08T16:34:13,462   ./base/sbml/xml/XMLTokenizer.cpp: In member function ‘virtual void XMLTokenizer::characters(const XMLToken&)’:
2023-09-08T16:34:13,463   ./base/sbml/xml/XMLTokenizer.cpp:247:3: warning: ‘nonnull’ argument ‘data’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:13,463     247 |   if (&data == NULL) return;
2023-09-08T16:34:13,464         |   ^~
2023-09-08T16:34:16,423   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T16:34:16,424   ./base/sbml/xml/XMLTriple.cpp:62:14: warning: the compiler can assume that the address of ‘name’ will never be NULL [-Waddress]
2023-09-08T16:34:16,424      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T16:34:16,425         |              ^
2023-09-08T16:34:16,426   ./base/sbml/xml/XMLTriple.cpp:58:45: note: ‘name’ declared here
2023-09-08T16:34:16,427      58 | XMLTriple::XMLTriple (  const std::string&  name
2023-09-08T16:34:16,428         |                         ~~~~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:16,428   ./base/sbml/xml/XMLTriple.cpp:62:32: warning: the compiler can assume that the address of ‘uri’ will never be NULL [-Waddress]
2023-09-08T16:34:16,429      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T16:34:16,430         |                                ^
2023-09-08T16:34:16,431   ./base/sbml/xml/XMLTriple.cpp:59:45: note: ‘uri’ declared here
2023-09-08T16:34:16,431      59 |                       , const std::string&  uri
2023-09-08T16:34:16,432         |                         ~~~~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:34:16,433   ./base/sbml/xml/XMLTriple.cpp:62:53: warning: the compiler can assume that the address of ‘prefix’ will never be NULL [-Waddress]
2023-09-08T16:34:16,433      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T16:34:16,434         |                                                     ^
2023-09-08T16:34:16,435   ./base/sbml/xml/XMLTriple.cpp:60:45: note: ‘prefix’ declared here
2023-09-08T16:34:16,436      60 |                       , const std::string&  prefix )
2023-09-08T16:34:16,437         |                         ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-09-08T16:34:16,437   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T16:34:16,438   ./base/sbml/xml/XMLTriple.cpp:81:16: warning: the compiler can assume that the address of ‘triplet’ will never be NULL [-Waddress]
2023-09-08T16:34:16,439      81 |   if (&triplet == NULL)
2023-09-08T16:34:16,440         |                ^
2023-09-08T16:34:16,440   ./base/sbml/xml/XMLTriple.cpp:79:42: note: ‘triplet’ declared here
2023-09-08T16:34:16,441      79 | XMLTriple::XMLTriple (const std::string& triplet, const char sepchar)
2023-09-08T16:34:16,441         |                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
2023-09-08T16:34:16,442   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T16:34:16,442   ./base/sbml/xml/XMLTriple.cpp:117:13: warning: the compiler can assume that the address of ‘orig’ will never be NULL [-Waddress]
2023-09-08T16:34:16,443     117 |   if (&orig == NULL)
2023-09-08T16:34:16,444         |             ^
2023-09-08T16:34:16,444   ./base/sbml/xml/XMLTriple.cpp:115:39: note: ‘orig’ declared here
2023-09-08T16:34:16,445     115 | XMLTriple::XMLTriple(const XMLTriple& orig)
2023-09-08T16:34:16,445         |                      ~~~~~~~~~~~~~~~~~^~~~
2023-09-08T16:34:16,446   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T16:34:16,447   ./base/sbml/xml/XMLTriple.cpp:136:12: warning: the compiler can assume that the address of ‘rhs’ will never be NULL [-Waddress]
2023-09-08T16:34:16,447     136 |   if (&rhs == NULL)
2023-09-08T16:34:16,448         |            ^
2023-09-08T16:34:16,449   ./base/sbml/xml/XMLTriple.cpp:134:39: note: ‘rhs’ declared here
2023-09-08T16:34:16,449     134 | XMLTriple::operator=(const XMLTriple& rhs)
2023-09-08T16:34:16,450         |                      ~~~~~~~~~~~~~~~~~^~~
2023-09-08T16:34:16,636   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, const std::string&, const std::string&)’:
2023-09-08T16:34:16,637   ./base/sbml/xml/XMLTriple.cpp:62:41: warning: ‘nonnull’ argument ‘prefix’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:16,637      62 |   if ((&name == NULL) || (&uri == NULL) || (&prefix == NULL))
2023-09-08T16:34:16,638         |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2023-09-08T16:34:16,639   ./base/sbml/xml/XMLTriple.cpp: In copy constructor ‘XMLTriple::XMLTriple(const XMLTriple&)’:
2023-09-08T16:34:16,639   ./base/sbml/xml/XMLTriple.cpp:117:3: warning: ‘nonnull’ argument ‘orig’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:16,640     117 |   if (&orig == NULL)
2023-09-08T16:34:16,641         |   ^~
2023-09-08T16:34:16,641   ./base/sbml/xml/XMLTriple.cpp: In member function ‘XMLTriple& XMLTriple::operator=(const XMLTriple&)’:
2023-09-08T16:34:16,642   ./base/sbml/xml/XMLTriple.cpp:136:3: warning: ‘nonnull’ argument ‘rhs’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:16,643     136 |   if (&rhs == NULL)
2023-09-08T16:34:16,644         |   ^~
2023-09-08T16:34:16,644   ./base/sbml/xml/XMLTriple.cpp: In constructor ‘XMLTriple::XMLTriple(const std::string&, char)’:
2023-09-08T16:34:16,645   ./base/sbml/xml/XMLTriple.cpp:81:3: warning: ‘nonnull’ argument ‘triplet’ compared to NULL [-Wnonnull-compare]
2023-09-08T16:34:16,646      81 |   if (&triplet == NULL)
2023-09-08T16:34:16,647         |   ^~
2023-09-08T16:34:25,103   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-09-08T16:34:25,103   !!

2023-09-08T16:34:25,105           ********************************************************************************
2023-09-08T16:34:25,105           Please avoid running ``setup.py`` directly.
2023-09-08T16:34:25,106           Instead, use pypa/build, pypa/installer or other
2023-09-08T16:34:25,106           standards-based tools.

2023-09-08T16:34:25,107           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-09-08T16:34:25,108           ********************************************************************************

2023-09-08T16:34:25,109   !!
2023-09-08T16:34:25,109     self.initialize_options()
2023-09-08T16:34:45,329   Building wheel for python-libsbml (setup.py): finished with status 'done'
2023-09-08T16:34:45,711   Created wheel for python-libsbml: filename=python_libsbml-5.10.2-cp311-cp311-linux_armv7l.whl size=32781456 sha256=3022e24ee1c3441fe6c4fba44c305264097a1da3506e93bf7391ea333858feff
2023-09-08T16:34:45,713   Stored in directory: /tmp/pip-ephem-wheel-cache-toj3dyte/wheels/b4/5e/ab/e8eb269d1c2330c78b23a979e28fce3d7b16d56a25add1d398
2023-09-08T16:34:45,732 Successfully built python-libsbml
2023-09-08T16:34:46,476 Removed build tracker: '/tmp/pip-build-tracker-h6jos00m'