2023-09-08T16:39:40,301 Created temporary directory: /tmp/pip-build-tracker-fye6mrua 2023-09-08T16:39:40,302 Initialized build tracking at /tmp/pip-build-tracker-fye6mrua 2023-09-08T16:39:40,303 Created build tracker: /tmp/pip-build-tracker-fye6mrua 2023-09-08T16:39:40,303 Entered build tracker: /tmp/pip-build-tracker-fye6mrua 2023-09-08T16:39:40,304 Created temporary directory: /tmp/pip-wheel-bxq6qowm 2023-09-08T16:39:40,307 Created temporary directory: /tmp/pip-ephem-wheel-cache-m5ce046j 2023-09-08T16:39:40,329 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T16:39:40,332 2 location(s) to search for versions of biom-format: 2023-09-08T16:39:40,332 * https://pypi.org/simple/biom-format/ 2023-09-08T16:39:40,332 * https://www.piwheels.org/simple/biom-format/ 2023-09-08T16:39:40,333 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2023-09-08T16:39:40,334 Getting page https://pypi.org/simple/biom-format/ 2023-09-08T16:39:40,336 Found index url https://pypi.org/simple/ 2023-09-08T16:39:40,480 Fetched page https://pypi.org/simple/biom-format/ as application/vnd.pypi.simple.v1+json 2023-09-08T16:39:40,487 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2023-09-08T16:39:40,488 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.0 2023-09-08T16:39:40,489 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.1 2023-09-08T16:39:40,489 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.0 2023-09-08T16:39:40,490 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.1 2023-09-08T16:39:40,491 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1 2023-09-08T16:39:40,492 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.1 2023-09-08T16:39:40,493 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.2 2023-09-08T16:39:40,493 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.3 2023-09-08T16:39:40,494 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.4 2023-09-08T16:39:40,495 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.5 2023-09-08T16:39:40,495 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.6 2023-09-08T16:39:40,496 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2023-09-08T16:39:40,497 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.7 2023-09-08T16:39:40,498 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2023-09-08T16:39:40,498 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2023-09-08T16:39:40,499 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.9 2023-09-08T16:39:40,499 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.10 2023-09-08T16:39:40,500 Found link https://files.pythonhosted.org/packages/fc/3f/7eb762b52f490b810b1686fd41cd6f3f7f33c0dab29c4273c96e9a1641a2/biom-format-2.1.12.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.12 2023-09-08T16:39:40,501 Found link https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.13 2023-09-08T16:39:40,502 Found link https://files.pythonhosted.org/packages/8e/2c/132267e58172821fc15fa3856f53ed09b607837fe06e2bb60b230005951d/biom-format-2.1.14.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.14 2023-09-08T16:39:40,503 Found link https://files.pythonhosted.org/packages/fc/db/daf7c3872dd49acf6233873fb6f1ab7b6ca324bba25bf28fc9cf7dfd4c7b/biom-format-2.1.15.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.15 2023-09-08T16:39:40,503 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/52/9b/f3d2fcc1d0141e86e08330c7516d750662f8a3df40c7f5ef8d633fc485b1/biom_format-2.1.15-cp310-cp310-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,504 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/69/1a/8346a46e7b68aa49a7303d8cf9a12c7c08ee1d0a2142f1066c906a99def0/biom_format-2.1.15-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,505 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ed/d4/6e42221bbbfee00aa96692583cef753a3f0b455b26854fd7111740a81999/biom_format-2.1.15-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,505 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/0b/2d/18978cf47787f2435d2d288d58c76e891b466845f670ffc14cd5455aca94/biom_format-2.1.15-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,506 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/63/ad/148ed220742d9d8995805a86877867551733a01edaf8e95a214ad36e051e/biom_format-2.1.15-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,506 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ae/b6/da4325213838fe4d078da9f73d913838959680217d2188b240818216113d/biom_format-2.1.15-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,507 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/2e/cf/4bc7592b3c48664c4c927547983814c4708c248ff3d753b0d60ac0ad7250/biom_format-2.1.15-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,508 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/7d/8a/6ea8c3bc9d61dcf46c6e7ccaf11ce07d46184a0b0e1ed31b8ec36db94e89/biom_format-2.1.15-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,508 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/ca/0d/64c1e729685aa1de049816f0972b9be78a9b8489a7b9ba1dc9ff6bc9f95e/biom_format-2.1.15-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,509 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/93/c5/5d6c2adce1ad1288c9d13a689971582fc556c5c3b7523c20b25dec4a8ae8/biom_format-2.1.15-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,509 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/74/bb/bdf0f58bcf7a6d287e94d94b3464263b62f04068f2109a4380efda6a025d/biom_format-2.1.15-cp38-cp38-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,510 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/14/fe/dc90a6ec894343130e40fca22c7c324fbd08d5f48559d2d7730cfa768a72/biom_format-2.1.15-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,510 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/9c/36/b2dcba3e20fe23f839e9641a9e5e600a342c422ab07bc54c6383a3980deb/biom_format-2.1.15-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,511 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/95/f4/65a3d3bdadff352d97e410173bcbf80ea5dfeefdf18588232d2029eac0d6/biom_format-2.1.15-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,511 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/0a/eb/5a836a2d9314e0a93db6c3cbb4f5a1019171ada3b8b0ff2e0c9bdbdcfc97/biom_format-2.1.15-cp39-cp39-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,512 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/4d/2a/9f1f3ea15f5894392ea77518f0982ebaac93b3c274c2762ea23defebf422/biom_format-2.1.15-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,512 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c4/f0/53a3e6a04d281e67b3d2745b9a9163c6be3a11970cf5150d73037a6c3cca/biom_format-2.1.15-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,513 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/50/14/4bf1e8766a9e4df3c2945e0d70f960985c0886ebcd09fd7d95bebeba9ff1/biom_format-2.1.15-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,514 Fetching project page and analyzing links: https://www.piwheels.org/simple/biom-format/ 2023-09-08T16:39:40,515 Getting page https://www.piwheels.org/simple/biom-format/ 2023-09-08T16:39:40,516 Found index url https://www.piwheels.org/simple/ 2023-09-08T16:39:40,802 Fetched page https://www.piwheels.org/simple/biom-format/ as text/html 2023-09-08T16:39:40,827 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp39-cp39-linux_armv7l.whl#sha256=c46bbbc0b12de30afe809971d36e1c6e15ab0145640243067ab25fd0ac7f371e (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,828 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp39-cp39-linux_armv6l.whl#sha256=c46bbbc0b12de30afe809971d36e1c6e15ab0145640243067ab25fd0ac7f371e (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,828 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp37-cp37m-linux_armv7l.whl#sha256=8c1abc435491cbae99b546242db95bb7579d6d1f8a07e35ec39af8e606858970 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,829 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.15-cp37-cp37m-linux_armv6l.whl#sha256=8c1abc435491cbae99b546242db95bb7579d6d1f8a07e35ec39af8e606858970 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,829 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp39-cp39-linux_armv7l.whl#sha256=ca23d062853e5ba6f0c54ba8cb321444b60c337ff96c5d08f2f365fdf3e7afc0 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,830 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp39-cp39-linux_armv6l.whl#sha256=ca23d062853e5ba6f0c54ba8cb321444b60c337ff96c5d08f2f365fdf3e7afc0 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,830 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp37-cp37m-linux_armv7l.whl#sha256=45dd2e44b2b46efdafb7678246b670cff402736187481b12f037d7f0c4d8f8e1 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,831 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp37-cp37m-linux_armv6l.whl#sha256=45dd2e44b2b46efdafb7678246b670cff402736187481b12f037d7f0c4d8f8e1 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,831 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp39-cp39-linux_armv7l.whl#sha256=80b341578111894f67221800901df758240597ef524df0db82477061329f821a (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-09-08T16:39:40,832 Skipping link: No binaries permitted for 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https://www.piwheels.org/simple/biom-format/biom_format-2.1-cp35-cp35m-linux_armv6l.whl#sha256=3f2a1b568c31077f0158d5c362ce35bf12b8113fa9d1e1b1b4ceef14d9828a61 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,872 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1-cp35-cp35m-linux_armv7l.whl#sha256=3f2a1b568c31077f0158d5c362ce35bf12b8113fa9d1e1b1b4ceef14d9828a61 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,872 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.1-cp39-cp39-linux_armv7l.whl#sha256=d6182bef514f635438b834481309528194ee4cce9ca22cbebd602f0fd535ec3d (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,873 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.1-cp39-cp39-linux_armv6l.whl#sha256=d6182bef514f635438b834481309528194ee4cce9ca22cbebd602f0fd535ec3d (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,874 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.1-cp37-cp37m-linux_armv7l.whl#sha256=55924baa1b7bcef023e8870d31644130fd348f27a5059f390115178a08efc9c6 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,875 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.1-cp37-cp37m-linux_armv6l.whl#sha256=55924baa1b7bcef023e8870d31644130fd348f27a5059f390115178a08efc9c6 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,875 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.1-cp35-cp35m-linux_armv7l.whl#sha256=53eaec7d407e2aecad03305cfaac5028a0691af5d105041748bb7bce007a62ba (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,875 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.1-cp35-cp35m-linux_armv6l.whl#sha256=53eaec7d407e2aecad03305cfaac5028a0691af5d105041748bb7bce007a62ba (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,876 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.1-cp34-cp34m-linux_armv7l.whl#sha256=7da34e0d1c989db527bf0c9f694424dc0c0822f5ac262a48b53b16fb2e1b0b8b (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,876 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.1-cp34-cp34m-linux_armv6l.whl#sha256=7da34e0d1c989db527bf0c9f694424dc0c0822f5ac262a48b53b16fb2e1b0b8b (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,877 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=7f2584f3e1b8e8897d7c7b4fbaf097a44a847fda65a385f8bda36b9177394b68 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,877 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=7f2584f3e1b8e8897d7c7b4fbaf097a44a847fda65a385f8bda36b9177394b68 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,878 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7a626aba8ff823cc9f782efde594c9996cfb48f2c2b456a2ed55c88977f2d1d1 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,878 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7a626aba8ff823cc9f782efde594c9996cfb48f2c2b456a2ed55c88977f2d1d1 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,879 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp35-cp35m-linux_armv6l.whl#sha256=117a559c6cc285a8c0e94138f1585e93ccef7862532d78e61d3f14d96ab4120f (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,879 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=117a559c6cc285a8c0e94138f1585e93ccef7862532d78e61d3f14d96ab4120f (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,880 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp34-cp34m-linux_armv7l.whl#sha256=65a3ba75376f8e5cacf4f89448fcc9ca10489d5a7203a89b71e8d9c71919fe33 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,880 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp34-cp34m-linux_armv6l.whl#sha256=65a3ba75376f8e5cacf4f89448fcc9ca10489d5a7203a89b71e8d9c71919fe33 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,881 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-1.3.1-py3-none-any.whl#sha256=f0b5649cb13509667e6ca75c84e68a1ff1de6716848e8d4f9a3ca8f8ca74b8df (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,882 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-1.3.0-py3-none-any.whl#sha256=ee9d81bea91a7c7da55697863c1b003aca4d14b7f7416fcb8c22e169e54aabe6 (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,882 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-1.2.0.dev0-py3-none-any.whl#sha256=1c6e81249da6f3e19dd7594733329820632b1b6b0355abe79af180116c3b8aba (from https://www.piwheels.org/simple/biom-format/) 2023-09-08T16:39:40,883 Skipping link: not a file: https://www.piwheels.org/simple/biom-format/ 2023-09-08T16:39:40,883 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2023-09-08T16:39:40,904 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2023-09-08T16:39:40,922 Collecting biom-format==2.1.1 2023-09-08T16:39:40,924 Created temporary directory: /tmp/pip-unpack-ysx29hyn 2023-09-08T16:39:41,159 Downloading biom-format-2.1.1.tar.gz (966 kB) 2023-09-08T16:39:42,175 Added biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-fye6mrua' 2023-09-08T16:39:42,177 Running setup.py (path:/tmp/pip-wheel-bxq6qowm/biom-format_9006f306c7e94f60826f9a16e2ca016e/setup.py) egg_info for package biom-format 2023-09-08T16:39:42,178 Created temporary directory: /tmp/pip-pip-egg-info-7mmpl7_9 2023-09-08T16:39:42,178 Preparing metadata (setup.py): started 2023-09-08T16:39:42,180 Running command python setup.py egg_info 2023-09-08T16:39:42,960 running egg_info 2023-09-08T16:39:42,961 creating /tmp/pip-pip-egg-info-7mmpl7_9/biom_format.egg-info 2023-09-08T16:39:42,979 writing /tmp/pip-pip-egg-info-7mmpl7_9/biom_format.egg-info/PKG-INFO 2023-09-08T16:39:42,981 writing dependency_links to /tmp/pip-pip-egg-info-7mmpl7_9/biom_format.egg-info/dependency_links.txt 2023-09-08T16:39:42,983 writing requirements to /tmp/pip-pip-egg-info-7mmpl7_9/biom_format.egg-info/requires.txt 2023-09-08T16:39:42,984 writing top-level names to /tmp/pip-pip-egg-info-7mmpl7_9/biom_format.egg-info/top_level.txt 2023-09-08T16:39:42,985 writing manifest file '/tmp/pip-pip-egg-info-7mmpl7_9/biom_format.egg-info/SOURCES.txt' 2023-09-08T16:39:43,095 reading manifest file '/tmp/pip-pip-egg-info-7mmpl7_9/biom_format.egg-info/SOURCES.txt' 2023-09-08T16:39:43,097 reading manifest template 'MANIFEST.in' 2023-09-08T16:39:43,134 no previously-included directories found matching 'docs/_build' 2023-09-08T16:39:43,136 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-09-08T16:39:43,137 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-09-08T16:39:43,139 warning: no previously-included files matching '.git' found anywhere in distribution 2023-09-08T16:39:43,139 adding license file 'COPYING.txt' 2023-09-08T16:39:43,156 writing manifest file '/tmp/pip-pip-egg-info-7mmpl7_9/biom_format.egg-info/SOURCES.txt' 2023-09-08T16:39:43,270 Preparing metadata (setup.py): finished with status 'done' 2023-09-08T16:39:43,274 Source in /tmp/pip-wheel-bxq6qowm/biom-format_9006f306c7e94f60826f9a16e2ca016e has version 2.1.1, which satisfies requirement biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz 2023-09-08T16:39:43,275 Removed biom-format==2.1.1 from https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-fye6mrua' 2023-09-08T16:39:43,280 Created temporary directory: /tmp/pip-unpack-05_y351u 2023-09-08T16:39:43,281 Created temporary directory: /tmp/pip-unpack-1594ov5c 2023-09-08T16:39:43,300 Building wheels for collected packages: biom-format 2023-09-08T16:39:43,304 Created temporary directory: /tmp/pip-wheel-pzz4y1zn 2023-09-08T16:39:43,305 Building wheel for biom-format (setup.py): started 2023-09-08T16:39:43,306 Destination directory: /tmp/pip-wheel-pzz4y1zn 2023-09-08T16:39:43,307 Running command python setup.py bdist_wheel 2023-09-08T16:39:44,267 running bdist_wheel 2023-09-08T16:39:44,353 running build 2023-09-08T16:39:44,353 running build_py 2023-09-08T16:39:44,374 creating build 2023-09-08T16:39:44,375 creating build/lib.linux-armv7l-cpython-311 2023-09-08T16:39:44,375 creating build/lib.linux-armv7l-cpython-311/biom 2023-09-08T16:39:44,376 copying biom/parse.py -> build/lib.linux-armv7l-cpython-311/biom 2023-09-08T16:39:44,379 copying biom/err.py -> build/lib.linux-armv7l-cpython-311/biom 2023-09-08T16:39:44,381 copying biom/__init__.py -> build/lib.linux-armv7l-cpython-311/biom 2023-09-08T16:39:44,383 copying biom/util.py -> build/lib.linux-armv7l-cpython-311/biom 2023-09-08T16:39:44,385 copying biom/table.py -> build/lib.linux-armv7l-cpython-311/biom 2023-09-08T16:39:44,389 copying biom/exception.py -> build/lib.linux-armv7l-cpython-311/biom 2023-09-08T16:39:44,392 creating build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,393 copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,395 copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,397 copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,399 copying biom/commands/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,400 copying biom/commands/table_converter.py -> build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,402 copying biom/commands/table_normalizer.py -> build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,404 copying biom/commands/table_validator.py -> build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,407 copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-cpython-311/biom/commands 2023-09-08T16:39:44,409 creating build/lib.linux-armv7l-cpython-311/biom/interfaces 2023-09-08T16:39:44,410 copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces 2023-09-08T16:39:44,412 creating build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse 2023-09-08T16:39:44,413 copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse 2023-09-08T16:39:44,414 copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse 2023-09-08T16:39:44,416 copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse 2023-09-08T16:39:44,418 creating build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,419 copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,422 copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,423 copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,425 copying biom/interfaces/optparse/config/normalize_table.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,426 copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,428 copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,430 copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,432 copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/optparse/config 2023-09-08T16:39:44,434 creating build/lib.linux-armv7l-cpython-311/biom/interfaces/html 2023-09-08T16:39:44,435 copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html 2023-09-08T16:39:44,437 copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html 2023-09-08T16:39:44,438 copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html 2023-09-08T16:39:44,440 creating build/lib.linux-armv7l-cpython-311/biom/interfaces/html/config 2023-09-08T16:39:44,441 copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html/config 2023-09-08T16:39:44,443 copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html/config 2023-09-08T16:39:44,445 copying biom/interfaces/html/config/normalize_table.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html/config 2023-09-08T16:39:44,447 copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html/config 2023-09-08T16:39:44,448 copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html/config 2023-09-08T16:39:44,450 copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html/config 2023-09-08T16:39:44,452 copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-cpython-311/biom/interfaces/html/config 2023-09-08T16:39:44,457 running build_ext 2023-09-08T16:39:44,464 building 'biom._filter' extension 2023-09-08T16:39:44,465 creating build/temp.linux-armv7l-cpython-311 2023-09-08T16:39:44,465 creating build/temp.linux-armv7l-cpython-311/biom 2023-09-08T16:39:44,466 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c biom/_filter.c -o build/temp.linux-armv7l-cpython-311/biom/_filter.o 2023-09-08T16:39:44,840 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-09-08T16:39:44,841 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-08T16:39:44,841 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-08T16:39:44,842 from biom/_filter.c:346: 2023-09-08T16:39:44,843 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-08T16:39:44,843 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-08T16:39:44,844 | ^~~~~~~ 2023-09-08T16:39:44,878 biom/_filter.c: In function ‘__Pyx_ListComp_Append’: 2023-09-08T16:39:44,879 biom/_filter.c:1006:23: error: lvalue required as left operand of assignment 2023-09-08T16:39:44,880 1006 | Py_SIZE(list) = len+1; 2023-09-08T16:39:44,880 | ^ 2023-09-08T16:39:44,977 biom/_filter.c: In function ‘__Pyx_InitCachedConstants’: 2023-09-08T16:39:44,982 biom/_filter.c:5442:241: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-08T16:39:44,982 5442 | __pyx_codeobj__12 = (PyObject*)__Pyx_PyCode_New(7, 0, 12, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__11, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_mcdonadt_ResearchWork_sof, __pyx_n_s_filter, 89, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__12)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T16:39:44,983 | ^~ 2023-09-08T16:39:44,984 | | 2023-09-08T16:39:44,984 | int 2023-09-08T16:39:44,985 biom/_filter.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:39:44,985 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:39:44,985 | ^~~~~ 2023-09-08T16:39:44,986 In file included from /usr/include/python3.11/Python.h:71, 2023-09-08T16:39:44,986 from biom/_filter.c:16: 2023-09-08T16:39:44,987 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-08T16:39:44,987 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T16:39:44,988 | ^~~~~~~~~~ 2023-09-08T16:39:44,989 biom/_filter.c:5442:245: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-08T16:39:44,989 5442 | __pyx_codeobj__12 = (PyObject*)__Pyx_PyCode_New(7, 0, 12, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__11, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_mcdonadt_ResearchWork_sof, __pyx_n_s_filter, 89, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__12)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T16:39:44,990 | ^~~~~~~~~~~~~~~~~ 2023-09-08T16:39:44,991 | | 2023-09-08T16:39:44,991 | PyObject * {aka struct _object *} 2023-09-08T16:39:44,992 biom/_filter.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:39:44,992 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:39:44,993 | ^~~~ 2023-09-08T16:39:44,994 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-08T16:39:44,994 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T16:39:44,995 | ^~~ 2023-09-08T16:39:44,996 biom/_filter.c:124:11: error: too few arguments to function ‘PyCode_New’ 2023-09-08T16:39:44,997 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:39:44,997 | ^~~~~~~~~~ 2023-09-08T16:39:44,998 biom/_filter.c:5442:34: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:39:44,998 5442 | __pyx_codeobj__12 = (PyObject*)__Pyx_PyCode_New(7, 0, 12, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__11, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_mcdonadt_ResearchWork_sof, __pyx_n_s_filter, 89, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__12)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 89; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T16:39:44,999 | ^~~~~~~~~~~~~~~~ 2023-09-08T16:39:44,999 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T16:39:45,000 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T16:39:45,000 | ^~~~~~~~~~ 2023-09-08T16:39:45,058 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2023-09-08T16:39:45,064 biom/_filter.c:6661:21: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T16:39:45,064 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T16:39:45,065 | ^ 2023-09-08T16:39:45,065 In file included from /usr/include/python3.11/unicodeobject.h:1042, 2023-09-08T16:39:45,066 from /usr/include/python3.11/Python.h:51: 2023-09-08T16:39:45,067 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T16:39:45,067 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T16:39:45,068 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T16:39:45,071 biom/_filter.c:6661:21: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T16:39:45,072 6661 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T16:39:45,073 | ^ 2023-09-08T16:39:45,074 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T16:39:45,074 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T16:39:45,075 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T16:39:45,080 biom/_filter.c:6677:25: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T16:39:45,080 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T16:39:45,081 | ^ 2023-09-08T16:39:45,082 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T16:39:45,082 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T16:39:45,083 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T16:39:45,087 biom/_filter.c:6677:25: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T16:39:45,087 6677 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T16:39:45,088 | ^ 2023-09-08T16:39:45,088 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T16:39:45,089 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T16:39:45,090 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T16:39:45,146 biom/_filter.c: In function ‘__Pyx_CreateCodeObjectForTraceback’: 2023-09-08T16:39:45,152 biom/_filter.c:7935:9: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-08T16:39:45,153 7935 | py_line, /*int firstlineno,*/ 2023-09-08T16:39:45,154 | ^~~~~~~ 2023-09-08T16:39:45,154 | | 2023-09-08T16:39:45,155 | int 2023-09-08T16:39:45,155 biom/_filter.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:39:45,156 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:39:45,156 | ^~~~~ 2023-09-08T16:39:45,156 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-08T16:39:45,157 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T16:39:45,157 | ^~~~~~~~~~ 2023-09-08T16:39:45,160 biom/_filter.c:7936:9: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-08T16:39:45,161 7936 | __pyx_empty_bytes /*PyObject *lnotab*/ 2023-09-08T16:39:45,161 | ^~~~~~~~~~~~~~~~~ 2023-09-08T16:39:45,162 | | 2023-09-08T16:39:45,162 | PyObject * {aka struct _object *} 2023-09-08T16:39:45,162 biom/_filter.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:39:45,163 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:39:45,163 | ^~~~ 2023-09-08T16:39:45,164 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-08T16:39:45,164 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T16:39:45,165 | ^~~ 2023-09-08T16:39:45,168 biom/_filter.c:124:11: error: too few arguments to function ‘PyCode_New’ 2023-09-08T16:39:45,168 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:39:45,169 | ^~~~~~~~~~ 2023-09-08T16:39:45,170 biom/_filter.c:7921:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:39:45,170 7921 | py_code = __Pyx_PyCode_New( 2023-09-08T16:39:45,171 | ^~~~~~~~~~~~~~~~ 2023-09-08T16:39:45,172 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T16:39:45,172 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T16:39:45,173 | ^~~~~~~~~~ 2023-09-08T16:39:45,174 biom/_filter.c: In function ‘__Pyx_AddTraceback’: 2023-09-08T16:39:45,180 biom/_filter.c:7967:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-08T16:39:45,180 7967 | py_frame->f_lineno = py_line; 2023-09-08T16:39:45,181 | ^~ 2023-09-08T16:39:45,247 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: 2023-09-08T16:39:45,248 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h: At top level: 2023-09-08T16:39:45,249 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2023-09-08T16:39:45,249 1477 | _import_array(void) 2023-09-08T16:39:45,250 | ^~~~~~~~~~~~~ 2023-09-08T16:39:45,253 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-08T16:39:45,380 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-08T16:39:45,393 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-08T16:39:45,393 exec(compile('"'"''"'"''"'"' 2023-09-08T16:39:45,393 # This is -- a caller that pip uses to run setup.py 2023-09-08T16:39:45,393 # 2023-09-08T16:39:45,393 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T16:39:45,393 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T16:39:45,393 # - It provides a clear error message when setuptools is not installed. 2023-09-08T16:39:45,393 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T16:39:45,393 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T16:39:45,393 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T16:39:45,393 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T16:39:45,393 import os, sys, tokenize 2023-09-08T16:39:45,393 2023-09-08T16:39:45,393 try: 2023-09-08T16:39:45,393 import setuptools 2023-09-08T16:39:45,393 except ImportError as error: 2023-09-08T16:39:45,393 print( 2023-09-08T16:39:45,393 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T16:39:45,393 "the build environment.", 2023-09-08T16:39:45,393 file=sys.stderr, 2023-09-08T16:39:45,393 ) 2023-09-08T16:39:45,393 sys.exit(1) 2023-09-08T16:39:45,393 2023-09-08T16:39:45,393 __file__ = %r 2023-09-08T16:39:45,393 sys.argv[0] = __file__ 2023-09-08T16:39:45,393 2023-09-08T16:39:45,393 if os.path.exists(__file__): 2023-09-08T16:39:45,393 filename = __file__ 2023-09-08T16:39:45,393 with tokenize.open(__file__) as f: 2023-09-08T16:39:45,393 setup_py_code = f.read() 2023-09-08T16:39:45,393 else: 2023-09-08T16:39:45,393 filename = "" 2023-09-08T16:39:45,393 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T16:39:45,393 2023-09-08T16:39:45,393 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T16:39:45,393 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-bxq6qowm/biom-format_9006f306c7e94f60826f9a16e2ca016e/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-pzz4y1zn[/] 2023-09-08T16:39:45,394 [bold magenta]cwd[/]: /tmp/pip-wheel-bxq6qowm/biom-format_9006f306c7e94f60826f9a16e2ca016e/ 2023-09-08T16:39:45,395 Building wheel for biom-format (setup.py): finished with status 'error' 2023-09-08T16:39:45,396 ERROR: Failed building wheel for biom-format 2023-09-08T16:39:45,398 Running setup.py clean for biom-format 2023-09-08T16:39:45,399 Running command python setup.py clean 2023-09-08T16:39:46,133 running clean 2023-09-08T16:39:46,169 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T16:39:46,170 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T16:39:46,183 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-08T16:39:46,183 'build/scripts-3.11' does not exist -- can't clean it 2023-09-08T16:39:46,184 removing 'build' 2023-09-08T16:39:46,294 Failed to build biom-format 2023-09-08T16:39:46,295 ERROR: Failed to build one or more wheels 2023-09-08T16:39:46,297 Exception information: 2023-09-08T16:39:46,297 Traceback (most recent call last): 2023-09-08T16:39:46,297 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T16:39:46,297 status = run_func(*args) 2023-09-08T16:39:46,297 ^^^^^^^^^^^^^^^ 2023-09-08T16:39:46,297 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T16:39:46,297 return func(self, options, args) 2023-09-08T16:39:46,297 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T16:39:46,297 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-08T16:39:46,297 raise CommandError("Failed to build one or more wheels") 2023-09-08T16:39:46,297 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-08T16:39:46,300 Removed build tracker: '/tmp/pip-build-tracker-fye6mrua'