2023-09-08T16:43:58,148 Created temporary directory: /tmp/pip-build-tracker-9m5re3nf 2023-09-08T16:43:58,149 Initialized build tracking at /tmp/pip-build-tracker-9m5re3nf 2023-09-08T16:43:58,149 Created build tracker: /tmp/pip-build-tracker-9m5re3nf 2023-09-08T16:43:58,150 Entered build tracker: /tmp/pip-build-tracker-9m5re3nf 2023-09-08T16:43:58,151 Created temporary directory: /tmp/pip-wheel-jj8nkqyp 2023-09-08T16:43:58,154 Created temporary directory: /tmp/pip-ephem-wheel-cache-rggbqkzt 2023-09-08T16:43:58,178 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T16:43:58,181 2 location(s) to search for versions of scikit-bio: 2023-09-08T16:43:58,181 * https://pypi.org/simple/scikit-bio/ 2023-09-08T16:43:58,181 * https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T16:43:58,182 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2023-09-08T16:43:58,183 Getting page https://pypi.org/simple/scikit-bio/ 2023-09-08T16:43:58,185 Found index url https://pypi.org/simple/ 2023-09-08T16:43:58,329 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2023-09-08T16:43:58,334 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2023-09-08T16:43:58,335 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2023-09-08T16:43:58,335 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2023-09-08T16:43:58,336 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2023-09-08T16:43:58,336 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2023-09-08T16:43:58,337 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2023-09-08T16:43:58,338 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2023-09-08T16:43:58,339 Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.1 2023-09-08T16:43:58,339 Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.2 2023-09-08T16:43:58,340 Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.2.3 2023-09-08T16:43:58,341 Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.0 2023-09-08T16:43:58,341 Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.1 2023-09-08T16:43:58,342 Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.4.2 2023-09-08T16:43:58,343 Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip (from https://pypi.org/simple/scikit-bio/), version: 0.5.0 2023-09-08T16:43:58,344 Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.1 2023-09-08T16:43:58,344 Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2023-09-08T16:43:58,345 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2023-09-08T16:43:58,345 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2023-09-08T16:43:58,346 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2023-09-08T16:43:58,346 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2023-09-08T16:43:58,347 Found link https://files.pythonhosted.org/packages/8c/a4/6ec875ba9a56f7705529aecc745ca3eaee6d90b87cd103281be7a032b412/scikit-bio-0.5.7.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.7 2023-09-08T16:43:58,348 Found link https://files.pythonhosted.org/packages/f3/5b/7ae2c3cca0cee7825a24b9c68d7ba0893ef816c41e43aeccf9ca3bc63cb7/scikit-bio-0.5.8.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.8 2023-09-08T16:43:58,348 Found link https://files.pythonhosted.org/packages/0b/ff/c3ed458b9c7b1cfdaadfcab2e015f3e21672bd57a8e216a319442e4c8a1b/scikit-bio-0.5.9.tar.gz (from https://pypi.org/simple/scikit-bio/), version: 0.5.9 2023-09-08T16:43:58,349 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T16:43:58,350 Getting page https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T16:43:58,351 Found index url https://www.piwheels.org/simple/ 2023-09-08T16:43:58,612 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2023-09-08T16:43:58,617 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv7l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,618 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp39-cp39-linux_armv6l.whl#sha256=b248a90a5ed7214267889ad197585aa84aeb5ec25dd9bb63ddc064cbda00a971 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,618 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv7l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,619 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.9-cp37-cp37m-linux_armv6l.whl#sha256=8fa99b56c44c5c2b18355ef926d00cf7d1d651ab8d0eb367747d3806c4e716dc (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,619 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,620 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,621 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,621 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv6l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,622 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,622 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv6l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,623 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,623 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,624 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv7l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,624 Skipping link: No binaries permitted for scikit-bio: https://www.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp35-cp35m-linux_armv6l.whl#sha256=3527865d97cf75cd55785b872d6e479bc2ee03250f6b71b9cc2d4a819d69c64c (from https://www.piwheels.org/simple/scikit-bio/) 2023-09-08T16:43:58,625 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2023-09-08T16:43:58,626 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2023-09-08T16:43:58,647 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2023-09-08T16:43:58,665 Collecting scikit-bio==0.2.2 2023-09-08T16:43:58,667 Created temporary directory: /tmp/pip-unpack-9601612f 2023-09-08T16:43:59,033 Downloading scikit-bio-0.2.2.tar.gz (7.9 MB) 2023-09-08T16:44:02,349 Added scikit-bio==0.2.2 from https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-9m5re3nf' 2023-09-08T16:44:02,351 Running setup.py (path:/tmp/pip-wheel-jj8nkqyp/scikit-bio_6790cd20316e479e869cf808fdb55256/setup.py) egg_info for package scikit-bio 2023-09-08T16:44:02,352 Created temporary directory: /tmp/pip-pip-egg-info-v2qdy9zb 2023-09-08T16:44:02,353 Preparing metadata (setup.py): started 2023-09-08T16:44:02,354 Running command python setup.py egg_info 2023-09-08T16:44:03,173 running egg_info 2023-09-08T16:44:03,174 creating /tmp/pip-pip-egg-info-v2qdy9zb/scikit_bio.egg-info 2023-09-08T16:44:03,192 writing /tmp/pip-pip-egg-info-v2qdy9zb/scikit_bio.egg-info/PKG-INFO 2023-09-08T16:44:03,195 writing dependency_links to /tmp/pip-pip-egg-info-v2qdy9zb/scikit_bio.egg-info/dependency_links.txt 2023-09-08T16:44:03,196 writing requirements to /tmp/pip-pip-egg-info-v2qdy9zb/scikit_bio.egg-info/requires.txt 2023-09-08T16:44:03,198 writing top-level names to /tmp/pip-pip-egg-info-v2qdy9zb/scikit_bio.egg-info/top_level.txt 2023-09-08T16:44:03,199 writing manifest file '/tmp/pip-pip-egg-info-v2qdy9zb/scikit_bio.egg-info/SOURCES.txt' 2023-09-08T16:44:03,325 reading manifest file '/tmp/pip-pip-egg-info-v2qdy9zb/scikit_bio.egg-info/SOURCES.txt' 2023-09-08T16:44:03,327 reading manifest template 'MANIFEST.in' 2023-09-08T16:44:03,360 no previously-included directories found matching 'doc/build' 2023-09-08T16:44:03,362 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-09-08T16:44:03,365 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-09-08T16:44:03,365 adding license file 'COPYING.txt' 2023-09-08T16:44:03,385 writing manifest file '/tmp/pip-pip-egg-info-v2qdy9zb/scikit_bio.egg-info/SOURCES.txt' 2023-09-08T16:44:03,498 Preparing metadata (setup.py): finished with status 'done' 2023-09-08T16:44:03,503 Source in /tmp/pip-wheel-jj8nkqyp/scikit-bio_6790cd20316e479e869cf808fdb55256 has version 0.2.2, which satisfies requirement scikit-bio==0.2.2 from https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz 2023-09-08T16:44:03,504 Removed scikit-bio==0.2.2 from https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-9m5re3nf' 2023-09-08T16:44:03,509 Created temporary directory: /tmp/pip-unpack-rp87_qgg 2023-09-08T16:44:03,510 Created temporary directory: /tmp/pip-unpack-4tgoo3ja 2023-09-08T16:44:03,541 Building wheels for collected packages: scikit-bio 2023-09-08T16:44:03,545 Created temporary directory: /tmp/pip-wheel-pbjlvmn6 2023-09-08T16:44:03,545 Building wheel for scikit-bio (setup.py): started 2023-09-08T16:44:03,547 Destination directory: /tmp/pip-wheel-pbjlvmn6 2023-09-08T16:44:03,547 Running command python setup.py bdist_wheel 2023-09-08T16:44:04,533 running bdist_wheel 2023-09-08T16:44:04,617 running build 2023-09-08T16:44:04,618 running build_py 2023-09-08T16:44:04,639 creating build 2023-09-08T16:44:04,640 creating build/lib.linux-armv7l-cpython-311 2023-09-08T16:44:04,640 creating build/lib.linux-armv7l-cpython-311/skbio 2023-09-08T16:44:04,641 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio 2023-09-08T16:44:04,643 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-311/skbio 2023-09-08T16:44:04,646 copying skbio/_base.py -> build/lib.linux-armv7l-cpython-311/skbio 2023-09-08T16:44:04,648 creating build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-08T16:44:04,649 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-08T16:44:04,651 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-08T16:44:04,653 copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-08T16:44:04,656 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-08T16:44:04,657 copying skbio/stats/spatial.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-08T16:44:04,659 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2023-09-08T16:44:04,662 creating build/lib.linux-armv7l-cpython-311/skbio/format 2023-09-08T16:44:04,663 copying skbio/format/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/format 2023-09-08T16:44:04,665 creating build/lib.linux-armv7l-cpython-311/skbio/draw 2023-09-08T16:44:04,666 copying skbio/draw/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/draw 2023-09-08T16:44:04,668 copying skbio/draw/_distributions.py -> build/lib.linux-armv7l-cpython-311/skbio/draw 2023-09-08T16:44:04,671 creating build/lib.linux-armv7l-cpython-311/skbio/diversity 2023-09-08T16:44:04,672 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2023-09-08T16:44:04,674 creating build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-08T16:44:04,675 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-08T16:44:04,677 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-08T16:44:04,679 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-08T16:44:04,681 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-08T16:44:04,684 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-08T16:44:04,686 copying skbio/tree/_trie.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2023-09-08T16:44:04,689 creating build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T16:44:04,690 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T16:44:04,692 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T16:44:04,693 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T16:44:04,695 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T16:44:04,696 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2023-09-08T16:44:04,699 creating build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-08T16:44:04,699 copying skbio/alignment/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-08T16:44:04,701 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-08T16:44:04,704 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-08T16:44:04,706 copying skbio/alignment/_alignment.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2023-09-08T16:44:04,710 creating build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,711 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,713 copying skbio/io/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,715 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,717 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,719 copying skbio/io/phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,721 copying skbio/io/ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,723 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,725 copying skbio/io/newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,727 copying skbio/io/clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,729 copying skbio/io/qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,731 copying skbio/io/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,734 copying skbio/io/_registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,736 copying skbio/io/lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,738 copying skbio/io/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2023-09-08T16:44:04,741 creating build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-08T16:44:04,742 copying skbio/sequence/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-08T16:44:04,744 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-08T16:44:04,746 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-08T16:44:04,748 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2023-09-08T16:44:04,751 creating build/lib.linux-armv7l-cpython-311/skbio/tests 2023-09-08T16:44:04,752 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2023-09-08T16:44:04,755 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2023-09-08T16:44:04,757 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2023-09-08T16:44:04,759 creating build/lib.linux-armv7l-cpython-311/skbio/parse 2023-09-08T16:44:04,760 copying skbio/parse/record.py -> build/lib.linux-armv7l-cpython-311/skbio/parse 2023-09-08T16:44:04,762 copying skbio/parse/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/parse 2023-09-08T16:44:04,764 copying skbio/parse/record_finder.py -> build/lib.linux-armv7l-cpython-311/skbio/parse 2023-09-08T16:44:04,766 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-08T16:44:04,767 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-08T16:44:04,769 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-08T16:44:04,771 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-08T16:44:04,772 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-08T16:44:04,775 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-08T16:44:04,776 copying skbio/stats/ordination/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-08T16:44:04,779 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2023-09-08T16:44:04,781 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-08T16:44:04,782 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-08T16:44:04,784 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-08T16:44:04,786 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-08T16:44:04,789 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-08T16:44:04,791 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-08T16:44:04,794 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2023-09-08T16:44:04,797 creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-08T16:44:04,798 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-08T16:44:04,800 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-08T16:44:04,802 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-08T16:44:04,804 copying skbio/stats/tests/test_spatial.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-08T16:44:04,806 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-08T16:44:04,808 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2023-09-08T16:44:04,811 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-08T16:44:04,812 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-08T16:44:04,814 copying skbio/stats/ordination/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2023-09-08T16:44:04,817 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-08T16:44:04,818 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-08T16:44:04,820 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-08T16:44:04,822 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-08T16:44:04,824 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-08T16:44:04,826 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-08T16:44:04,828 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2023-09-08T16:44:04,831 creating build/lib.linux-armv7l-cpython-311/skbio/format/sequences 2023-09-08T16:44:04,832 copying skbio/format/sequences/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences 2023-09-08T16:44:04,834 copying skbio/format/sequences/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences 2023-09-08T16:44:04,835 copying skbio/format/sequences/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences 2023-09-08T16:44:04,838 creating build/lib.linux-armv7l-cpython-311/skbio/format/sequences/tests 2023-09-08T16:44:04,839 copying skbio/format/sequences/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences/tests 2023-09-08T16:44:04,841 copying skbio/format/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences/tests 2023-09-08T16:44:04,842 copying skbio/format/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/format/sequences/tests 2023-09-08T16:44:04,844 creating build/lib.linux-armv7l-cpython-311/skbio/draw/tests 2023-09-08T16:44:04,845 copying skbio/draw/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/draw/tests 2023-09-08T16:44:04,847 copying skbio/draw/tests/test_distributions.py -> build/lib.linux-armv7l-cpython-311/skbio/draw/tests 2023-09-08T16:44:04,850 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-08T16:44:04,851 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-08T16:44:04,853 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-08T16:44:04,856 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-08T16:44:04,857 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-08T16:44:04,859 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-08T16:44:04,861 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2023-09-08T16:44:04,864 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2023-09-08T16:44:04,865 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2023-09-08T16:44:04,867 copying skbio/diversity/beta/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2023-09-08T16:44:04,869 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-08T16:44:04,870 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-08T16:44:04,872 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-08T16:44:04,874 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-08T16:44:04,876 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-08T16:44:04,877 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-08T16:44:04,879 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2023-09-08T16:44:04,882 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2023-09-08T16:44:04,883 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2023-09-08T16:44:04,885 copying skbio/diversity/beta/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2023-09-08T16:44:04,887 creating build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-08T16:44:04,888 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-08T16:44:04,890 copying skbio/tree/tests/test_trie.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-08T16:44:04,892 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-08T16:44:04,894 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-08T16:44:04,897 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2023-09-08T16:44:04,899 creating build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T16:44:04,900 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T16:44:04,902 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T16:44:04,904 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2023-09-08T16:44:04,906 creating build/lib.linux-armv7l-cpython-311/skbio/alignment/_lib 2023-09-08T16:44:04,907 copying skbio/alignment/_lib/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/_lib 2023-09-08T16:44:04,909 creating build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-08T16:44:04,910 copying skbio/alignment/tests/test_alignment.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-08T16:44:04,912 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-08T16:44:04,914 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-08T16:44:04,916 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2023-09-08T16:44:04,920 creating build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,920 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,922 copying skbio/io/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,924 copying skbio/io/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,927 copying skbio/io/tests/test_newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,929 copying skbio/io/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,931 copying skbio/io/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,934 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,936 copying skbio/io/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,938 copying skbio/io/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,941 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,943 copying skbio/io/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,946 copying skbio/io/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2023-09-08T16:44:04,948 creating build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-08T16:44:04,949 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-08T16:44:04,952 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-08T16:44:04,953 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2023-09-08T16:44:04,957 creating build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T16:44:04,958 copying skbio/parse/sequences/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T16:44:04,959 copying skbio/parse/sequences/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T16:44:04,961 copying skbio/parse/sequences/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T16:44:04,963 copying skbio/parse/sequences/clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T16:44:04,965 copying skbio/parse/sequences/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T16:44:04,967 copying skbio/parse/sequences/factory.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T16:44:04,969 copying skbio/parse/sequences/iterator.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences 2023-09-08T16:44:04,971 creating build/lib.linux-armv7l-cpython-311/skbio/parse/tests 2023-09-08T16:44:04,972 copying skbio/parse/tests/test_record.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/tests 2023-09-08T16:44:04,974 copying skbio/parse/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/tests 2023-09-08T16:44:04,976 copying skbio/parse/tests/test_record_finder.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/tests 2023-09-08T16:44:04,979 creating build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T16:44:04,979 copying skbio/parse/sequences/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T16:44:04,981 copying skbio/parse/sequences/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T16:44:04,983 copying skbio/parse/sequences/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T16:44:04,985 copying skbio/parse/sequences/tests/test_factory.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T16:44:04,987 copying skbio/parse/sequences/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T16:44:04,989 copying skbio/parse/sequences/tests/test_iterator.py -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests 2023-09-08T16:44:05,009 creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,010 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,012 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,014 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,015 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,017 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,019 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,021 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,023 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,025 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,027 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,029 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,031 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2023-09-08T16:44:05,033 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,034 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,036 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,038 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,040 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,042 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,044 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,045 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,047 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,049 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,051 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,053 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,055 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,057 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,058 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,060 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,062 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,064 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,066 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2023-09-08T16:44:05,068 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,069 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,071 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,073 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,075 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,077 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,079 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,081 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,083 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,085 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,087 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,089 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,091 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,093 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,095 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,097 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,099 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,101 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2023-09-08T16:44:05,103 creating build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,104 copying skbio/io/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,105 copying skbio/io/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,107 copying skbio/io/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,109 copying skbio/io/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,111 copying skbio/io/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,113 copying skbio/io/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,115 copying skbio/io/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,117 copying skbio/io/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,119 copying skbio/io/tests/data/fasta_invalid_blank_line -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,121 copying skbio/io/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,123 copying skbio/io/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,125 copying skbio/io/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,127 copying skbio/io/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,129 copying skbio/io/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,131 copying skbio/io/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,133 copying skbio/io/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,134 copying skbio/io/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,136 copying skbio/io/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,138 copying skbio/io/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,140 copying skbio/io/tests/data/fasta_sequence_collection_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,142 copying skbio/io/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,144 copying skbio/io/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,146 copying skbio/io/tests/data/empty -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,147 copying skbio/io/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,149 copying skbio/io/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,151 copying skbio/io/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,153 copying skbio/io/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,154 copying skbio/io/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,156 copying skbio/io/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,158 copying skbio/io/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,160 copying skbio/io/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,162 copying skbio/io/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,164 copying skbio/io/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,166 copying skbio/io/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,168 copying skbio/io/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,170 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,172 copying skbio/io/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,174 copying skbio/io/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,176 copying skbio/io/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,178 copying skbio/io/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,180 copying skbio/io/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,182 copying skbio/io/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,184 copying skbio/io/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,186 copying skbio/io/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,188 copying skbio/io/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,190 copying skbio/io/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,192 copying skbio/io/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,194 copying skbio/io/tests/data/qual_invalid_blank_line -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,196 copying skbio/io/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,198 copying skbio/io/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,200 copying skbio/io/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,202 copying skbio/io/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,204 copying skbio/io/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,206 copying skbio/io/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,207 copying skbio/io/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,209 copying skbio/io/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,211 copying skbio/io/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,213 copying skbio/io/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,215 copying skbio/io/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,217 copying skbio/io/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,219 copying skbio/io/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,221 copying skbio/io/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,223 copying skbio/io/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,225 copying skbio/io/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,227 copying skbio/io/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,229 copying skbio/io/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,231 copying skbio/io/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,233 copying skbio/io/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,235 copying skbio/io/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,237 copying skbio/io/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,239 copying skbio/io/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,241 copying skbio/io/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,243 copying skbio/io/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,245 copying skbio/io/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,247 copying skbio/io/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,249 copying skbio/io/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,250 copying skbio/io/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,252 copying skbio/io/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,255 copying skbio/io/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,256 copying skbio/io/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,258 copying skbio/io/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,260 copying skbio/io/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,262 copying skbio/io/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,264 copying skbio/io/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,266 copying skbio/io/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,268 copying skbio/io/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,270 copying skbio/io/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,272 copying skbio/io/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,274 copying skbio/io/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,276 copying skbio/io/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,278 copying skbio/io/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,280 copying skbio/io/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,282 copying skbio/io/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,284 copying skbio/io/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,285 copying skbio/io/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,288 copying skbio/io/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,289 copying skbio/io/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,292 copying skbio/io/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,294 copying skbio/io/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,296 copying skbio/io/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,298 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,300 copying skbio/io/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,302 copying skbio/io/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,304 copying skbio/io/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,306 copying skbio/io/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,308 copying skbio/io/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,310 copying skbio/io/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,311 copying skbio/io/tests/data/fasta_invalid_whitespace_only_line -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,313 copying skbio/io/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,315 copying skbio/io/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,317 copying skbio/io/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,319 copying skbio/io/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,321 copying skbio/io/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,323 copying skbio/io/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,324 copying skbio/io/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,326 copying skbio/io/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,328 copying skbio/io/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,330 copying skbio/io/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,332 copying skbio/io/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,333 copying skbio/io/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,335 copying skbio/io/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,337 copying skbio/io/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,339 copying skbio/io/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,341 copying skbio/io/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,343 copying skbio/io/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,346 copying skbio/io/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,347 copying skbio/io/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,349 copying skbio/io/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,351 copying skbio/io/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,354 copying skbio/io/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,356 copying skbio/io/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,358 copying skbio/io/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,360 copying skbio/io/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,362 copying skbio/io/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,364 copying skbio/io/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,366 copying skbio/io/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,368 copying skbio/io/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,370 copying skbio/io/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,372 copying skbio/io/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,375 copying skbio/io/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,377 copying skbio/io/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,379 copying skbio/io/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,380 copying skbio/io/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,383 copying skbio/io/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,385 copying skbio/io/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,387 copying skbio/io/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,389 copying skbio/io/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,391 copying skbio/io/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,394 copying skbio/io/tests/data/fasta_single_nuc_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,396 copying skbio/io/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,398 copying skbio/io/tests/data/fasta_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,400 copying skbio/io/tests/data/qual_sequence_collection_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,401 copying skbio/io/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,403 copying skbio/io/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,405 copying skbio/io/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,407 copying skbio/io/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,409 copying skbio/io/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,411 copying skbio/io/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,413 copying skbio/io/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,415 copying skbio/io/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,417 copying skbio/io/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,419 copying skbio/io/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,421 copying skbio/io/tests/data/qual_invalid_whitespace_only_line -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,423 copying skbio/io/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,425 copying skbio/io/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,427 copying skbio/io/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,428 copying skbio/io/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,430 copying skbio/io/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,432 copying skbio/io/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,434 copying skbio/io/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,436 copying skbio/io/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,438 copying skbio/io/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,440 copying skbio/io/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,441 copying skbio/io/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,443 copying skbio/io/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2023-09-08T16:44:05,445 creating build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T16:44:05,446 copying skbio/parse/sequences/tests/data/fq1.fastq.gz -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T16:44:05,448 copying skbio/parse/sequences/tests/data/fna1.qual -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T16:44:05,449 copying skbio/parse/sequences/tests/data/fq1.fq -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T16:44:05,451 copying skbio/parse/sequences/tests/data/noextensionfasta -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T16:44:05,453 copying skbio/parse/sequences/tests/data/fna1.fna.gz -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T16:44:05,455 copying skbio/parse/sequences/tests/data/qs1.qseq.gz -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T16:44:05,457 copying skbio/parse/sequences/tests/data/fna1.fasta -> build/lib.linux-armv7l-cpython-311/skbio/parse/sequences/tests/data 2023-09-08T16:44:05,473 running build_ext 2023-09-08T16:44:05,480 building 'skbio.stats.__subsample' extension 2023-09-08T16:44:05,481 creating build/temp.linux-armv7l-cpython-311 2023-09-08T16:44:05,481 creating build/temp.linux-armv7l-cpython-311/skbio 2023-09-08T16:44:05,482 creating build/temp.linux-armv7l-cpython-311/skbio/stats 2023-09-08T16:44:05,483 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c skbio/stats/__subsample.c -o build/temp.linux-armv7l-cpython-311/skbio/stats/__subsample.o 2023-09-08T16:44:05,856 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-09-08T16:44:05,857 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-09-08T16:44:05,858 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-09-08T16:44:05,858 from skbio/stats/__subsample.c:352: 2023-09-08T16:44:05,859 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-09-08T16:44:05,859 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-09-08T16:44:05,860 | ^~~~~~~ 2023-09-08T16:44:05,940 skbio/stats/__subsample.c: In function ‘__Pyx_InitCachedConstants’: 2023-09-08T16:44:05,943 skbio/stats/__subsample.c:3861:264: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-08T16:44:05,944 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T16:44:05,944 | ^~ 2023-09-08T16:44:05,945 | | 2023-09-08T16:44:05,945 | int 2023-09-08T16:44:05,946 skbio/stats/__subsample.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:44:05,946 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:44:05,947 | ^~~~~ 2023-09-08T16:44:05,948 In file included from /usr/include/python3.11/Python.h:71, 2023-09-08T16:44:05,948 from skbio/stats/__subsample.c:16: 2023-09-08T16:44:05,949 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-08T16:44:05,949 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T16:44:05,950 | ^~~~~~~~~~ 2023-09-08T16:44:05,951 skbio/stats/__subsample.c:3861:268: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-08T16:44:05,951 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T16:44:05,952 | ^~~~~~~~~~~~~~~~~ 2023-09-08T16:44:05,953 | | 2023-09-08T16:44:05,953 | PyObject * {aka struct _object *} 2023-09-08T16:44:05,954 skbio/stats/__subsample.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:44:05,955 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:44:05,955 | ^~~~ 2023-09-08T16:44:05,956 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-08T16:44:05,956 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T16:44:05,957 | ^~~ 2023-09-08T16:44:05,957 skbio/stats/__subsample.c:124:11: error: too few arguments to function ‘PyCode_New’ 2023-09-08T16:44:05,958 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:44:05,958 | ^~~~~~~~~~ 2023-09-08T16:44:05,959 skbio/stats/__subsample.c:3861:33: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:44:05,960 3861 | __pyx_codeobj__8 = (PyObject*)__Pyx_PyCode_New(3, 0, 11, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__7, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_Users_jairideout_dev_scikit_bio, __pyx_n_s_subsample_counts_without_replac, 15, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 15; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2023-09-08T16:44:05,960 | ^~~~~~~~~~~~~~~~ 2023-09-08T16:44:05,960 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T16:44:05,961 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T16:44:05,962 | ^~~~~~~~~~ 2023-09-08T16:44:05,962 skbio/stats/__subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2023-09-08T16:44:05,963 skbio/stats/__subsample.c:4148:21: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T16:44:05,964 4148 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T16:44:05,964 | ^ 2023-09-08T16:44:05,965 In file included from /usr/include/python3.11/unicodeobject.h:1042, 2023-09-08T16:44:05,966 from /usr/include/python3.11/Python.h:51: 2023-09-08T16:44:05,966 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T16:44:05,967 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T16:44:05,967 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T16:44:05,968 skbio/stats/__subsample.c:4148:21: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T16:44:05,968 4148 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T16:44:05,969 | ^ 2023-09-08T16:44:05,969 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T16:44:05,970 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T16:44:05,971 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T16:44:05,971 skbio/stats/__subsample.c:4164:25: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T16:44:05,972 4164 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T16:44:05,973 | ^ 2023-09-08T16:44:05,973 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T16:44:05,974 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T16:44:05,975 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T16:44:05,975 skbio/stats/__subsample.c:4164:25: warning: ‘PyUnicode_GET_SIZE’ is deprecated [-Wdeprecated-declarations] 2023-09-08T16:44:05,976 4164 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2023-09-08T16:44:05,976 | ^ 2023-09-08T16:44:05,976 /usr/include/python3.11/cpython/unicodeobject.h:652:26: note: declared here 2023-09-08T16:44:05,977 652 | static inline Py_ssize_t PyUnicode_GET_SIZE(PyObject *op) 2023-09-08T16:44:05,977 | ^~~~~~~~~~~~~~~~~~ 2023-09-08T16:44:06,059 skbio/stats/__subsample.c: In function ‘__Pyx_CreateCodeObjectForTraceback’: 2023-09-08T16:44:06,065 skbio/stats/__subsample.c:6180:9: warning: passing argument 14 of ‘PyCode_New’ makes pointer from integer without a cast [-Wint-conversion] 2023-09-08T16:44:06,065 6180 | py_line, /*int firstlineno,*/ 2023-09-08T16:44:06,066 | ^~~~~~~ 2023-09-08T16:44:06,066 | | 2023-09-08T16:44:06,066 | int 2023-09-08T16:44:06,067 skbio/stats/__subsample.c:124:72: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:44:06,068 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:44:06,068 | ^~~~~ 2023-09-08T16:44:06,068 /usr/include/python3.11/cpython/code.h:151:33: note: expected ‘PyObject *’ {aka ‘struct _object *’} but argument is of type ‘int’ 2023-09-08T16:44:06,069 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T16:44:06,070 | ^~~~~~~~~~ 2023-09-08T16:44:06,070 skbio/stats/__subsample.c:6181:9: warning: passing argument 15 of ‘PyCode_New’ makes integer from pointer without a cast [-Wint-conversion] 2023-09-08T16:44:06,071 6181 | __pyx_empty_bytes /*PyObject *lnotab*/ 2023-09-08T16:44:06,072 | ^~~~~~~~~~~~~~~~~ 2023-09-08T16:44:06,073 | | 2023-09-08T16:44:06,073 | PyObject * {aka struct _object *} 2023-09-08T16:44:06,074 skbio/stats/__subsample.c:124:79: note: in definition of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:44:06,074 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:44:06,075 | ^~~~ 2023-09-08T16:44:06,076 /usr/include/python3.11/cpython/code.h:151:45: note: expected ‘int’ but argument is of type ‘PyObject *’ {aka ‘struct _object *’} 2023-09-08T16:44:06,076 151 | PyObject *, PyObject *, PyObject *, int, PyObject *, 2023-09-08T16:44:06,077 | ^~~ 2023-09-08T16:44:06,078 skbio/stats/__subsample.c:124:11: error: too few arguments to function ‘PyCode_New’ 2023-09-08T16:44:06,078 124 | PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) 2023-09-08T16:44:06,079 | ^~~~~~~~~~ 2023-09-08T16:44:06,079 skbio/stats/__subsample.c:6166:15: note: in expansion of macro ‘__Pyx_PyCode_New’ 2023-09-08T16:44:06,080 6166 | py_code = __Pyx_PyCode_New( 2023-09-08T16:44:06,081 | ^~~~~~~~~~~~~~~~ 2023-09-08T16:44:06,081 /usr/include/python3.11/cpython/code.h:148:28: note: declared here 2023-09-08T16:44:06,082 148 | PyAPI_FUNC(PyCodeObject *) PyCode_New( 2023-09-08T16:44:06,082 | ^~~~~~~~~~ 2023-09-08T16:44:06,083 skbio/stats/__subsample.c: In function ‘__Pyx_AddTraceback’: 2023-09-08T16:44:06,086 skbio/stats/__subsample.c:6212:13: error: invalid use of incomplete typedef ‘PyFrameObject’ {aka ‘struct _frame’} 2023-09-08T16:44:06,086 6212 | py_frame->f_lineno = py_line; 2023-09-08T16:44:06,087 | ^~ 2023-09-08T16:44:06,126 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21: 2023-09-08T16:44:06,126 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h: At top level: 2023-09-08T16:44:06,127 /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1477:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2023-09-08T16:44:06,127 1477 | _import_array(void) 2023-09-08T16:44:06,128 | ^~~~~~~~~~~~~ 2023-09-08T16:44:06,131 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2023-09-08T16:44:06,258 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-08T16:44:06,271 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-08T16:44:06,271 exec(compile('"'"''"'"''"'"' 2023-09-08T16:44:06,271 # This is -- a caller that pip uses to run setup.py 2023-09-08T16:44:06,271 # 2023-09-08T16:44:06,271 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T16:44:06,271 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T16:44:06,271 # - It provides a clear error message when setuptools is not installed. 2023-09-08T16:44:06,271 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T16:44:06,271 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T16:44:06,271 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T16:44:06,271 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T16:44:06,271 import os, sys, tokenize 2023-09-08T16:44:06,271 2023-09-08T16:44:06,271 try: 2023-09-08T16:44:06,271 import setuptools 2023-09-08T16:44:06,271 except ImportError as error: 2023-09-08T16:44:06,271 print( 2023-09-08T16:44:06,271 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T16:44:06,271 "the build environment.", 2023-09-08T16:44:06,271 file=sys.stderr, 2023-09-08T16:44:06,271 ) 2023-09-08T16:44:06,271 sys.exit(1) 2023-09-08T16:44:06,271 2023-09-08T16:44:06,271 __file__ = %r 2023-09-08T16:44:06,271 sys.argv[0] = __file__ 2023-09-08T16:44:06,271 2023-09-08T16:44:06,271 if os.path.exists(__file__): 2023-09-08T16:44:06,271 filename = __file__ 2023-09-08T16:44:06,271 with tokenize.open(__file__) as f: 2023-09-08T16:44:06,271 setup_py_code = f.read() 2023-09-08T16:44:06,271 else: 2023-09-08T16:44:06,271 filename = "" 2023-09-08T16:44:06,271 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T16:44:06,271 2023-09-08T16:44:06,271 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T16:44:06,271 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-jj8nkqyp/scikit-bio_6790cd20316e479e869cf808fdb55256/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-pbjlvmn6[/] 2023-09-08T16:44:06,272 [bold magenta]cwd[/]: /tmp/pip-wheel-jj8nkqyp/scikit-bio_6790cd20316e479e869cf808fdb55256/ 2023-09-08T16:44:06,272 Building wheel for scikit-bio (setup.py): finished with status 'error' 2023-09-08T16:44:06,273 ERROR: Failed building wheel for scikit-bio 2023-09-08T16:44:06,275 Running setup.py clean for scikit-bio 2023-09-08T16:44:06,276 Running command python setup.py clean 2023-09-08T16:44:07,022 running clean 2023-09-08T16:44:07,058 removing 'build/temp.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T16:44:07,061 removing 'build/lib.linux-armv7l-cpython-311' (and everything under it) 2023-09-08T16:44:07,172 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-08T16:44:07,172 'build/scripts-3.11' does not exist -- can't clean it 2023-09-08T16:44:07,173 removing 'build' 2023-09-08T16:44:07,283 Failed to build scikit-bio 2023-09-08T16:44:07,284 ERROR: Failed to build one or more wheels 2023-09-08T16:44:07,285 Exception information: 2023-09-08T16:44:07,285 Traceback (most recent call last): 2023-09-08T16:44:07,285 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T16:44:07,285 status = run_func(*args) 2023-09-08T16:44:07,285 ^^^^^^^^^^^^^^^ 2023-09-08T16:44:07,285 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T16:44:07,285 return func(self, options, args) 2023-09-08T16:44:07,285 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T16:44:07,285 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-08T16:44:07,285 raise CommandError("Failed to build one or more wheels") 2023-09-08T16:44:07,285 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-08T16:44:07,288 Removed build tracker: '/tmp/pip-build-tracker-9m5re3nf'