2023-09-08T17:22:31,343 Created temporary directory: /tmp/pip-build-tracker-1zor5484
2023-09-08T17:22:31,344 Initialized build tracking at /tmp/pip-build-tracker-1zor5484
2023-09-08T17:22:31,345 Created build tracker: /tmp/pip-build-tracker-1zor5484
2023-09-08T17:22:31,345 Entered build tracker: /tmp/pip-build-tracker-1zor5484
2023-09-08T17:22:31,346 Created temporary directory: /tmp/pip-wheel-8gp747mx
2023-09-08T17:22:31,349 Created temporary directory: /tmp/pip-ephem-wheel-cache-5yargnhs
2023-09-08T17:22:31,375 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T17:22:31,379 2 location(s) to search for versions of pyrmsd:
2023-09-08T17:22:31,379 * https://pypi.org/simple/pyrmsd/
2023-09-08T17:22:31,379 * https://www.piwheels.org/simple/pyrmsd/
2023-09-08T17:22:31,380 Fetching project page and analyzing links: https://pypi.org/simple/pyrmsd/
2023-09-08T17:22:31,381 Getting page https://pypi.org/simple/pyrmsd/
2023-09-08T17:22:31,383 Found index url https://pypi.org/simple/
2023-09-08T17:22:31,534 Fetched page https://pypi.org/simple/pyrmsd/ as application/vnd.pypi.simple.v1+json
2023-09-08T17:22:31,536   Found link https://files.pythonhosted.org/packages/80/b5/1fd41c73d58d030d036ba78ed3a9291b1916e3975c071c521576715a41c8/pyRMSD-4.0.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.0.0
2023-09-08T17:22:31,537   Found link https://files.pythonhosted.org/packages/f3/30/bf5cc08908f79127fecd306e126be5984ccb30be76bcdb62a39c582975aa/pyRMSD-4.0.1.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.0.1
2023-09-08T17:22:31,537   Found link https://files.pythonhosted.org/packages/45/7e/ac00abc640a76116139741b73c6eadd1cae264bb324f62acdb43f7806847/pyRMSD-4.1.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.1.0
2023-09-08T17:22:31,538   Found link https://files.pythonhosted.org/packages/fb/17/cb4a46781fa84b8d974c1da54ace55674a1182c7bccd87047a8404971e41/pyRMSD-4.2.0.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.2.0
2023-09-08T17:22:31,539   Found link https://files.pythonhosted.org/packages/21/18/170ed35c7aaaae5bbb522b3c9a6bb1a7f4fd978702ea64e188975c2017aa/pyRMSD-4.2.1.tar.gz (from https://pypi.org/simple/pyrmsd/), version: 4.2.1
2023-09-08T17:22:31,540 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyrmsd/
2023-09-08T17:22:31,540 Getting page https://www.piwheels.org/simple/pyrmsd/
2023-09-08T17:22:31,542 Found index url https://www.piwheels.org/simple/
2023-09-08T17:22:32,518 Fetched page https://www.piwheels.org/simple/pyrmsd/ as text/html
2023-09-08T17:22:32,521 Skipping link: not a file: https://www.piwheels.org/simple/pyrmsd/
2023-09-08T17:22:32,522 Skipping link: not a file: https://pypi.org/simple/pyrmsd/
2023-09-08T17:22:32,564 Given no hashes to check 1 links for project 'pyrmsd': discarding no candidates
2023-09-08T17:22:32,583 Collecting pyrmsd==4.2.1
2023-09-08T17:22:32,585   Created temporary directory: /tmp/pip-unpack-7_eblqjq
2023-09-08T17:22:32,815   Downloading pyRMSD-4.2.1.tar.gz (54 kB)
2023-09-08T17:22:32,971   Added pyrmsd==4.2.1 from https://files.pythonhosted.org/packages/21/18/170ed35c7aaaae5bbb522b3c9a6bb1a7f4fd978702ea64e188975c2017aa/pyRMSD-4.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-1zor5484'
2023-09-08T17:22:32,974   Running setup.py (path:/tmp/pip-wheel-8gp747mx/pyrmsd_ea3514733de04b159cbb642676b97513/setup.py) egg_info for package pyrmsd
2023-09-08T17:22:32,975   Created temporary directory: /tmp/pip-pip-egg-info-d3d51un8
2023-09-08T17:22:32,975   Preparing metadata (setup.py): started
2023-09-08T17:22:32,976   Running command python setup.py egg_info
2023-09-08T17:22:33,453   Traceback (most recent call last):
2023-09-08T17:22:33,454     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 23, in <module>
2023-09-08T17:22:33,454       from . import multiarray
2023-09-08T17:22:33,455     File "/usr/local/lib/python3.11/dist-packages/numpy/core/multiarray.py", line 10, in <module>
2023-09-08T17:22:33,456       from . import overrides
2023-09-08T17:22:33,457     File "/usr/local/lib/python3.11/dist-packages/numpy/core/overrides.py", line 8, in <module>
2023-09-08T17:22:33,457       from numpy.core._multiarray_umath import (
2023-09-08T17:22:33,458   ImportError: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T17:22:33,460   During handling of the above exception, another exception occurred:

2023-09-08T17:22:33,462   Traceback (most recent call last):
2023-09-08T17:22:33,462     File "<string>", line 2, in <module>
2023-09-08T17:22:33,463     File "<pip-setuptools-caller>", line 34, in <module>
2023-09-08T17:22:33,464     File "/tmp/pip-wheel-8gp747mx/pyrmsd_ea3514733de04b159cbb642676b97513/setup.py", line 7, in <module>
2023-09-08T17:22:33,465       import numpy
2023-09-08T17:22:33,465     File "/usr/local/lib/python3.11/dist-packages/numpy/__init__.py", line 139, in <module>
2023-09-08T17:22:33,466       from . import core
2023-09-08T17:22:33,467     File "/usr/local/lib/python3.11/dist-packages/numpy/core/__init__.py", line 49, in <module>
2023-09-08T17:22:33,467       raise ImportError(msg)
2023-09-08T17:22:33,468   ImportError:

2023-09-08T17:22:33,470   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

2023-09-08T17:22:33,471   Importing the numpy C-extensions failed. This error can happen for
2023-09-08T17:22:33,472   many reasons, often due to issues with your setup or how NumPy was
2023-09-08T17:22:33,473   installed.

2023-09-08T17:22:33,474   We have compiled some common reasons and troubleshooting tips at:

2023-09-08T17:22:33,476       https://numpy.org/devdocs/user/troubleshooting-importerror.html

2023-09-08T17:22:33,477   Please note and check the following:

2023-09-08T17:22:33,479     * The Python version is: Python3.11 from "/usr/bin/python3"
2023-09-08T17:22:33,480     * The NumPy version is: "1.25.2"

2023-09-08T17:22:33,482   and make sure that they are the versions you expect.
2023-09-08T17:22:33,482   Please carefully study the documentation linked above for further help.

2023-09-08T17:22:33,484   Original error was: libopenblas.so.0: cannot open shared object file: No such file or directory

2023-09-08T17:22:33,533   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-08T17:22:33,546   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-08T17:22:33,546   exec(compile('"'"''"'"''"'"'
2023-09-08T17:22:33,546   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T17:22:33,546   #
2023-09-08T17:22:33,546   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T17:22:33,546   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T17:22:33,546   # - It provides a clear error message when setuptools is not installed.
2023-09-08T17:22:33,546   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T17:22:33,546   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T17:22:33,546   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T17:22:33,546   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T17:22:33,546   import os, sys, tokenize
2023-09-08T17:22:33,546   
2023-09-08T17:22:33,546   try:
2023-09-08T17:22:33,546       import setuptools
2023-09-08T17:22:33,546   except ImportError as error:
2023-09-08T17:22:33,546       print(
2023-09-08T17:22:33,546           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T17:22:33,546           "the build environment.",
2023-09-08T17:22:33,546           file=sys.stderr,
2023-09-08T17:22:33,546       )
2023-09-08T17:22:33,546       sys.exit(1)
2023-09-08T17:22:33,546   
2023-09-08T17:22:33,546   __file__ = %r
2023-09-08T17:22:33,546   sys.argv[0] = __file__
2023-09-08T17:22:33,546   
2023-09-08T17:22:33,546   if os.path.exists(__file__):
2023-09-08T17:22:33,546       filename = __file__
2023-09-08T17:22:33,546       with tokenize.open(__file__) as f:
2023-09-08T17:22:33,546           setup_py_code = f.read()
2023-09-08T17:22:33,546   else:
2023-09-08T17:22:33,546       filename = "<auto-generated setuptools caller>"
2023-09-08T17:22:33,546       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T17:22:33,546   
2023-09-08T17:22:33,546   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T17:22:33,546   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-8gp747mx/pyrmsd_ea3514733de04b159cbb642676b97513/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-d3d51un8[/]
2023-09-08T17:22:33,547   [bold magenta]cwd[/]: /tmp/pip-wheel-8gp747mx/pyrmsd_ea3514733de04b159cbb642676b97513/
2023-09-08T17:22:33,548   Preparing metadata (setup.py): finished with status 'error'
2023-09-08T17:22:33,549 ERROR: [present-rich] metadata generation failed
2023-09-08T17:22:33,555 Exception information:
2023-09-08T17:22:33,555 Traceback (most recent call last):
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-08T17:22:33,555     call_subprocess(
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-08T17:22:33,555     raise error
2023-09-08T17:22:33,555 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-08T17:22:33,555 
2023-09-08T17:22:33,555 The above exception was the direct cause of the following exception:
2023-09-08T17:22:33,555 
2023-09-08T17:22:33,555 Traceback (most recent call last):
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T17:22:33,555     status = run_func(*args)
2023-09-08T17:22:33,555              ^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T17:22:33,555     return func(self, options, args)
2023-09-08T17:22:33,555            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-08T17:22:33,555     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-08T17:22:33,555                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-08T17:22:33,555     result = self._result = resolver.resolve(
2023-09-08T17:22:33,555                             ^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-08T17:22:33,555     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-08T17:22:33,555             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-08T17:22:33,555     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-08T17:22:33,555     if not criterion.candidates:
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-08T17:22:33,555     return bool(self._sequence)
2023-09-08T17:22:33,555            ^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-08T17:22:33,555     return any(self)
2023-09-08T17:22:33,555            ^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-08T17:22:33,555     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-08T17:22:33,555            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-08T17:22:33,555     candidate = func()
2023-09-08T17:22:33,555                 ^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-08T17:22:33,555     self._link_candidate_cache[link] = LinkCandidate(
2023-09-08T17:22:33,555                                        ^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-08T17:22:33,555     super().__init__(
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-08T17:22:33,555     self.dist = self._prepare()
2023-09-08T17:22:33,555                 ^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-08T17:22:33,555     dist = self._prepare_distribution()
2023-09-08T17:22:33,555            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-08T17:22:33,555     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-08T17:22:33,555            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-08T17:22:33,555     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-08T17:22:33,555            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-08T17:22:33,555     dist = _get_prepared_distribution(
2023-09-08T17:22:33,555            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-08T17:22:33,555     abstract_dist.prepare_distribution_metadata(
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-08T17:22:33,555     self.req.prepare_metadata()
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-08T17:22:33,555     self.metadata_directory = generate_metadata_legacy(
2023-09-08T17:22:33,555                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:22:33,555   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-08T17:22:33,555     raise MetadataGenerationFailed(package_details=details) from error
2023-09-08T17:22:33,555 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-08T17:22:33,567 Removed pyrmsd==4.2.1 from https://files.pythonhosted.org/packages/21/18/170ed35c7aaaae5bbb522b3c9a6bb1a7f4fd978702ea64e188975c2017aa/pyRMSD-4.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-1zor5484'
2023-09-08T17:22:33,568 Removed build tracker: '/tmp/pip-build-tracker-1zor5484'