2023-09-08T17:35:47,414 Created temporary directory: /tmp/pip-build-tracker-1cp6kq3t
2023-09-08T17:35:47,415 Initialized build tracking at /tmp/pip-build-tracker-1cp6kq3t
2023-09-08T17:35:47,416 Created build tracker: /tmp/pip-build-tracker-1cp6kq3t
2023-09-08T17:35:47,416 Entered build tracker: /tmp/pip-build-tracker-1cp6kq3t
2023-09-08T17:35:47,417 Created temporary directory: /tmp/pip-wheel-qor_365p
2023-09-08T17:35:47,420 Created temporary directory: /tmp/pip-ephem-wheel-cache-3uqz336s
2023-09-08T17:35:47,441 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-09-08T17:35:47,445 2 location(s) to search for versions of iva:
2023-09-08T17:35:47,445 * https://pypi.org/simple/iva/
2023-09-08T17:35:47,445 * https://www.piwheels.org/simple/iva/
2023-09-08T17:35:47,446 Fetching project page and analyzing links: https://pypi.org/simple/iva/
2023-09-08T17:35:47,446 Getting page https://pypi.org/simple/iva/
2023-09-08T17:35:47,448 Found index url https://pypi.org/simple/
2023-09-08T17:35:47,587 Fetched page https://pypi.org/simple/iva/ as application/vnd.pypi.simple.v1+json
2023-09-08T17:35:47,591   Found link https://files.pythonhosted.org/packages/c0/d5/cd9a1cd475fad181d9d4cfe04fb3e98f693249808e5c0156f5db25c4d6f8/iva-0.11.1.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.1
2023-09-08T17:35:47,592   Found link https://files.pythonhosted.org/packages/c4/5b/46d9978ec04f4579cf0251a7867ed9770b03dd0c0a101f0ccfd08aec09e0/iva-0.11.2.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.2
2023-09-08T17:35:47,593   Found link https://files.pythonhosted.org/packages/87/36/586387e486df150c3ee56e86138050af60d8564a426925cd0b125cf63d1d/iva-0.11.3.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.3
2023-09-08T17:35:47,593   Found link https://files.pythonhosted.org/packages/bd/92/5780cbd75bf3e9997aeb80289e1398f97cc54292ab0fd2646d729ff81a10/iva-0.11.4.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.4
2023-09-08T17:35:47,594   Found link https://files.pythonhosted.org/packages/8b/96/d062a8059431e21ab9a4d7eabd64127ee5ec3a4142901e0ebd5363fb0d40/iva-0.11.5.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.5
2023-09-08T17:35:47,595   Found link https://files.pythonhosted.org/packages/73/30/0855ccf30407b0b199cf0cc313e1c8f0ed5f58f7a7e4e76b1c2560acea0c/iva-0.11.6.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.6
2023-09-08T17:35:47,595   Found link https://files.pythonhosted.org/packages/70/d0/5171f8ddb17374f500528e501a44dfd4a89b03d35fbf55079a11dc4802a5/iva-0.11.7.tar.gz (from https://pypi.org/simple/iva/), version: 0.11.7
2023-09-08T17:35:47,596   Found link https://files.pythonhosted.org/packages/36/3b/7debbe4fcbaa98b569aea8e017f75456d1e6ff60990db6564d72d56cc3d6/iva-1.0.0.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.0
2023-09-08T17:35:47,597   Found link https://files.pythonhosted.org/packages/51/7a/583cce3f6d7aa28f104a6d2c8271a19f8fccf512ecbeaf9086ab1e9709bb/iva-1.0.1.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.1
2023-09-08T17:35:47,598   Found link https://files.pythonhosted.org/packages/85/cd/700fc82fd658a5f03b325cb0c18dcde20d58941fec6943d4306c8da85545/iva-1.0.2.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.2
2023-09-08T17:35:47,599   Found link https://files.pythonhosted.org/packages/e5/16/1e5253a1f24cf1ab783811cd0b09e28630449347c0ccd9b2bdd3e68de644/iva-1.0.3.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.3
2023-09-08T17:35:47,599   Found link https://files.pythonhosted.org/packages/2f/9a/4eeb0316e8efc47d0783936521e493e752028c778dc3853015e3c4e8c63f/iva-1.0.4.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.4
2023-09-08T17:35:47,600   Found link https://files.pythonhosted.org/packages/d1/b1/21f598b41652b2c4bbcc3fb3ae4e869ada20d7b26b9294310bcef5d63f23/iva-1.0.5.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.5
2023-09-08T17:35:47,601   Found link https://files.pythonhosted.org/packages/3d/df/f8a1d735abea19137c9a940e90c171dd14415ad1b8add912ab9886ce98a1/iva-1.0.6.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.6
2023-09-08T17:35:47,601   Found link https://files.pythonhosted.org/packages/bf/02/7a0c43f68d755458ea1dd1f2e541144cc90bc767ab2e3369d8f0e8893262/iva-1.0.8.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.8
2023-09-08T17:35:47,602   Found link https://files.pythonhosted.org/packages/5a/f8/a8ea62d810a1d9a42d93c05d8de5605b607065ed3a4cf227ec737ddbd150/iva-1.0.9.tar.gz (from https://pypi.org/simple/iva/), version: 1.0.9
2023-09-08T17:35:47,603 Fetching project page and analyzing links: https://www.piwheels.org/simple/iva/
2023-09-08T17:35:47,604 Getting page https://www.piwheels.org/simple/iva/
2023-09-08T17:35:47,605 Found index url https://www.piwheels.org/simple/
2023-09-08T17:35:50,398 Fetched page https://www.piwheels.org/simple/iva/ as text/html
2023-09-08T17:35:50,400 Skipping link: not a file: https://www.piwheels.org/simple/iva/
2023-09-08T17:35:50,401 Skipping link: not a file: https://pypi.org/simple/iva/
2023-09-08T17:35:50,437 Given no hashes to check 1 links for project 'iva': discarding no candidates
2023-09-08T17:35:50,469 Collecting iva==0.11.3
2023-09-08T17:35:50,472   Created temporary directory: /tmp/pip-unpack-ubyjqukg
2023-09-08T17:35:51,798   Downloading iva-0.11.3.tar.gz (98 kB)
2023-09-08T17:35:51,997   Added iva==0.11.3 from https://files.pythonhosted.org/packages/87/36/586387e486df150c3ee56e86138050af60d8564a426925cd0b125cf63d1d/iva-0.11.3.tar.gz to build tracker '/tmp/pip-build-tracker-1cp6kq3t'
2023-09-08T17:35:51,998   Running setup.py (path:/tmp/pip-wheel-qor_365p/iva_bf2a7b4afff448f884eaac1ec154556d/setup.py) egg_info for package iva
2023-09-08T17:35:51,999   Created temporary directory: /tmp/pip-pip-egg-info-d1ujfymu
2023-09-08T17:35:52,000   Preparing metadata (setup.py): started
2023-09-08T17:35:52,001   Running command python setup.py egg_info
2023-09-08T17:35:52,420   Cannot install because some dependencies not found.
2023-09-08T17:35:52,421   Checking dependencies found in path:
2023-09-08T17:35:52,421    NOT FOUND	kmc
2023-09-08T17:35:52,422    NOT FOUND	kmc_dump
2023-09-08T17:35:52,423    NOT FOUND	nucmer
2023-09-08T17:35:52,424    NOT FOUND	delta-filter
2023-09-08T17:35:52,425    NOT FOUND	show-coords
2023-09-08T17:35:52,426    NOT FOUND	samtools
2023-09-08T17:35:52,426    NOT FOUND	smalt
2023-09-08T17:35:52,493   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-09-08T17:35:52,505   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-09-08T17:35:52,505   exec(compile('"'"''"'"''"'"'
2023-09-08T17:35:52,505   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-09-08T17:35:52,505   #
2023-09-08T17:35:52,505   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-09-08T17:35:52,505   #   import from `distutils.core` to work with newer packaging standards.
2023-09-08T17:35:52,505   # - It provides a clear error message when setuptools is not installed.
2023-09-08T17:35:52,505   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-09-08T17:35:52,505   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-09-08T17:35:52,505   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-09-08T17:35:52,505   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-09-08T17:35:52,505   import os, sys, tokenize
2023-09-08T17:35:52,505   
2023-09-08T17:35:52,505   try:
2023-09-08T17:35:52,505       import setuptools
2023-09-08T17:35:52,505   except ImportError as error:
2023-09-08T17:35:52,505       print(
2023-09-08T17:35:52,505           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-09-08T17:35:52,505           "the build environment.",
2023-09-08T17:35:52,505           file=sys.stderr,
2023-09-08T17:35:52,505       )
2023-09-08T17:35:52,505       sys.exit(1)
2023-09-08T17:35:52,505   
2023-09-08T17:35:52,505   __file__ = %r
2023-09-08T17:35:52,505   sys.argv[0] = __file__
2023-09-08T17:35:52,505   
2023-09-08T17:35:52,505   if os.path.exists(__file__):
2023-09-08T17:35:52,505       filename = __file__
2023-09-08T17:35:52,505       with tokenize.open(__file__) as f:
2023-09-08T17:35:52,505           setup_py_code = f.read()
2023-09-08T17:35:52,505   else:
2023-09-08T17:35:52,505       filename = "<auto-generated setuptools caller>"
2023-09-08T17:35:52,505       setup_py_code = "from setuptools import setup; setup()"
2023-09-08T17:35:52,505   
2023-09-08T17:35:52,505   exec(compile(setup_py_code, filename, "exec"))
2023-09-08T17:35:52,505   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-qor_365p/iva_bf2a7b4afff448f884eaac1ec154556d/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-d1ujfymu[/]
2023-09-08T17:35:52,506   [bold magenta]cwd[/]: /tmp/pip-wheel-qor_365p/iva_bf2a7b4afff448f884eaac1ec154556d/
2023-09-08T17:35:52,507   Preparing metadata (setup.py): finished with status 'error'
2023-09-08T17:35:52,508 ERROR: [present-rich] metadata generation failed
2023-09-08T17:35:52,513 Exception information:
2023-09-08T17:35:52,513 Traceback (most recent call last):
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-09-08T17:35:52,513     call_subprocess(
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-09-08T17:35:52,513     raise error
2023-09-08T17:35:52,513 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-09-08T17:35:52,513 
2023-09-08T17:35:52,513 The above exception was the direct cause of the following exception:
2023-09-08T17:35:52,513 
2023-09-08T17:35:52,513 Traceback (most recent call last):
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper
2023-09-08T17:35:52,513     status = run_func(*args)
2023-09-08T17:35:52,513              ^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper
2023-09-08T17:35:52,513     return func(self, options, args)
2023-09-08T17:35:52,513            ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run
2023-09-08T17:35:52,513     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-09-08T17:35:52,513                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-09-08T17:35:52,513     result = self._result = resolver.resolve(
2023-09-08T17:35:52,513                             ^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve
2023-09-08T17:35:52,513     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-09-08T17:35:52,513             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve
2023-09-08T17:35:52,513     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria
2023-09-08T17:35:52,513     if not criterion.candidates:
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__
2023-09-08T17:35:52,513     return bool(self._sequence)
2023-09-08T17:35:52,513            ^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-09-08T17:35:52,513     return any(self)
2023-09-08T17:35:52,513            ^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-09-08T17:35:52,513     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-09-08T17:35:52,513            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-09-08T17:35:52,513     candidate = func()
2023-09-08T17:35:52,513                 ^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-09-08T17:35:52,513     self._link_candidate_cache[link] = LinkCandidate(
2023-09-08T17:35:52,513                                        ^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__
2023-09-08T17:35:52,513     super().__init__(
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__
2023-09-08T17:35:52,513     self.dist = self._prepare()
2023-09-08T17:35:52,513                 ^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare
2023-09-08T17:35:52,513     dist = self._prepare_distribution()
2023-09-08T17:35:52,513            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution
2023-09-08T17:35:52,513     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-09-08T17:35:52,513            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement
2023-09-08T17:35:52,513     return self._prepare_linked_requirement(req, parallel_builds)
2023-09-08T17:35:52,513            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement
2023-09-08T17:35:52,513     dist = _get_prepared_distribution(
2023-09-08T17:35:52,513            ^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-09-08T17:35:52,513     abstract_dist.prepare_distribution_metadata(
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-09-08T17:35:52,513     self.req.prepare_metadata()
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata
2023-09-08T17:35:52,513     self.metadata_directory = generate_metadata_legacy(
2023-09-08T17:35:52,513                               ^^^^^^^^^^^^^^^^^^^^^^^^^
2023-09-08T17:35:52,513   File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-09-08T17:35:52,513     raise MetadataGenerationFailed(package_details=details) from error
2023-09-08T17:35:52,513 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-09-08T17:35:52,526 Removed iva==0.11.3 from https://files.pythonhosted.org/packages/87/36/586387e486df150c3ee56e86138050af60d8564a426925cd0b125cf63d1d/iva-0.11.3.tar.gz from build tracker '/tmp/pip-build-tracker-1cp6kq3t'
2023-09-08T17:35:52,527 Removed build tracker: '/tmp/pip-build-tracker-1cp6kq3t'