2023-09-08T18:10:19,329 Created temporary directory: /tmp/pip-build-tracker-2wfnv9ol 2023-09-08T18:10:19,331 Initialized build tracking at /tmp/pip-build-tracker-2wfnv9ol 2023-09-08T18:10:19,331 Created build tracker: /tmp/pip-build-tracker-2wfnv9ol 2023-09-08T18:10:19,331 Entered build tracker: /tmp/pip-build-tracker-2wfnv9ol 2023-09-08T18:10:19,332 Created temporary directory: /tmp/pip-wheel-iea7pomy 2023-09-08T18:10:19,335 Created temporary directory: /tmp/pip-ephem-wheel-cache-6xxdujt0 2023-09-08T18:10:19,359 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T18:10:19,362 2 location(s) to search for versions of ponytools: 2023-09-08T18:10:19,362 * https://pypi.org/simple/ponytools/ 2023-09-08T18:10:19,362 * https://www.piwheels.org/simple/ponytools/ 2023-09-08T18:10:19,363 Fetching project page and analyzing links: https://pypi.org/simple/ponytools/ 2023-09-08T18:10:19,364 Getting page https://pypi.org/simple/ponytools/ 2023-09-08T18:10:19,366 Found index url https://pypi.org/simple/ 2023-09-08T18:10:19,580 Fetched page https://pypi.org/simple/ponytools/ as application/vnd.pypi.simple.v1+json 2023-09-08T18:10:19,583 Found link https://files.pythonhosted.org/packages/31/f4/426f093ad50b9e82b4f8d7cac3e2c1e8441fa02df47d78dad2a6836ead56/ponytools-0.1.0.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.0 2023-09-08T18:10:19,584 Found link https://files.pythonhosted.org/packages/ff/38/c356834b171815620ac126d229c2a9a286268284f66748db3275ee6df04e/ponytools-0.1.1.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.1 2023-09-08T18:10:19,585 Found link https://files.pythonhosted.org/packages/52/0d/fe9c27dc94118cdc850f16c61360de97913154c502352f38aa0063f12226/ponytools-0.1.3.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.3 2023-09-08T18:10:19,586 Found link https://files.pythonhosted.org/packages/d2/18/8dbbe7b98ec4ce363ce7d74e3282750e901b134bdff24dd0987b01cd7d26/ponytools-0.1.4.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.4 2023-09-08T18:10:19,586 Found link https://files.pythonhosted.org/packages/17/3a/05917d1df9abd8a117b6b72282a150b124e8355650d3f14c9d18ded59de8/ponytools-0.1.5.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.5 2023-09-08T18:10:19,587 Found link https://files.pythonhosted.org/packages/d7/b4/5c96cf158def6055188e868b96c609e9291f940e59443d8a37f5f9c27eac/ponytools-0.1.6.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.6 2023-09-08T18:10:19,588 Found link https://files.pythonhosted.org/packages/de/76/7c3348ce212b503bffb2ba490866f4fbf1419bbda4357bbecdb71efd6c1a/ponytools-0.1.7.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.7 2023-09-08T18:10:19,588 Found link https://files.pythonhosted.org/packages/f3/b8/2b9e16c9e4ee5b969ed866705aa2a8995a5d5bf479f9e384ac06e1923f49/ponytools-0.1.9.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.9 2023-09-08T18:10:19,589 Found link https://files.pythonhosted.org/packages/bc/c6/7c689b0c8577cd0509bfd6b9dc7ed4ac96292d10832cec47a197e7bc1a4b/ponytools-0.1.11.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.1.11 2023-09-08T18:10:19,590 Found link https://files.pythonhosted.org/packages/a2/90/2ecdb3bbbfec52d49db5379d4687a49c7672f0943589d2b8c3c0cd81cbfb/ponytools-0.2.1.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.2.1 2023-09-08T18:10:19,591 Found link https://files.pythonhosted.org/packages/15/4a/55f158511127674e130d2c9bef730dad09e4bde01d16c9a29bab51f2c7a7/ponytools-0.2.3.tar.gz (from https://pypi.org/simple/ponytools/), version: 0.2.3 2023-09-08T18:10:19,592 Fetching project page and analyzing links: https://www.piwheels.org/simple/ponytools/ 2023-09-08T18:10:19,593 Getting page https://www.piwheels.org/simple/ponytools/ 2023-09-08T18:10:19,594 Found index url https://www.piwheels.org/simple/ 2023-09-08T18:10:21,713 Fetched page https://www.piwheels.org/simple/ponytools/ as text/html 2023-09-08T18:10:21,721 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.1.1-py3-none-any.whl#sha256=c183c5a786d0cda5e4638df3ee53f27781fce46dcbd2be471118af3d5a1e3077 (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,722 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.1.11-py3-none-any.whl#sha256=e3473f89e4c8869a9044fc00262d6c769aa3b10309b9eb93c075f30a4c59ce07 (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,724 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.1.3-py3-none-any.whl#sha256=f70993117d5cee007996503462e72e9c49d2b731ac58ae67b57de81d9b0bc3fb (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,725 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.1.4-py3-none-any.whl#sha256=1583eb9e0282fe21d7da1c50d7443de0b0d9071c0ce16ad2a3ead5363ddd906c (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,726 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.1.5-py3-none-any.whl#sha256=2430b04aa0c1649d9cbc7286343b43f8f73b822d347b103290314e760da8f6ab (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,727 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.1.6-py3-none-any.whl#sha256=8e1ecef64d2969dfabc9f4ec2c095d3cd75c8603a996eb13825b197a88ec2a97 (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,728 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.1.7-py3-none-any.whl#sha256=a1d3656601027a5fcb82dbcc732b938ac63a5e3969d30e28e2f73bebf40a51c1 (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,728 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.1.9-py3-none-any.whl#sha256=f710c0a61d115e0640daefeba031d574d51e2afbc58c246927419762630a7a23 (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,729 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.2.1-py3-none-any.whl#sha256=2e92dafb26660e53654e934d33325b3d580405d3f91d8e3dfab558621b1d3c45 (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,730 Skipping link: No binaries permitted for ponytools: https://www.piwheels.org/simple/ponytools/ponytools-0.2.3-py3-none-any.whl#sha256=9ed65a1a090935eda37a5aa68df7e6e9f41d230423ed0be6bcdc9f9dfd422cfb (from https://www.piwheels.org/simple/ponytools/) 2023-09-08T18:10:21,731 Skipping link: not a file: https://www.piwheels.org/simple/ponytools/ 2023-09-08T18:10:21,732 Skipping link: not a file: https://pypi.org/simple/ponytools/ 2023-09-08T18:10:21,766 Given no hashes to check 1 links for project 'ponytools': discarding no candidates 2023-09-08T18:10:21,797 Collecting ponytools==0.1.0 2023-09-08T18:10:21,800 Created temporary directory: /tmp/pip-unpack-dgedf67r 2023-09-08T18:10:22,874 Downloading ponytools-0.1.0.tar.gz (16 kB) 2023-09-08T18:10:22,950 Added ponytools==0.1.0 from https://files.pythonhosted.org/packages/31/f4/426f093ad50b9e82b4f8d7cac3e2c1e8441fa02df47d78dad2a6836ead56/ponytools-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-2wfnv9ol' 2023-09-08T18:10:22,955 Running setup.py (path:/tmp/pip-wheel-iea7pomy/ponytools_300768ce1a234cb883da440d32a59e3f/setup.py) egg_info for package ponytools 2023-09-08T18:10:22,956 Created temporary directory: /tmp/pip-pip-egg-info-fhflmamk 2023-09-08T18:10:22,958 Preparing metadata (setup.py): started 2023-09-08T18:10:22,960 Running command python setup.py egg_info 2023-09-08T18:10:23,989 running egg_info 2023-09-08T18:10:23,990 creating /tmp/pip-pip-egg-info-fhflmamk/ponytools.egg-info 2023-09-08T18:10:24,014 writing /tmp/pip-pip-egg-info-fhflmamk/ponytools.egg-info/PKG-INFO 2023-09-08T18:10:24,017 writing dependency_links to /tmp/pip-pip-egg-info-fhflmamk/ponytools.egg-info/dependency_links.txt 2023-09-08T18:10:24,019 writing requirements to /tmp/pip-pip-egg-info-fhflmamk/ponytools.egg-info/requires.txt 2023-09-08T18:10:24,020 writing top-level names to /tmp/pip-pip-egg-info-fhflmamk/ponytools.egg-info/top_level.txt 2023-09-08T18:10:24,021 writing manifest file '/tmp/pip-pip-egg-info-fhflmamk/ponytools.egg-info/SOURCES.txt' 2023-09-08T18:10:24,120 reading manifest file '/tmp/pip-pip-egg-info-fhflmamk/ponytools.egg-info/SOURCES.txt' 2023-09-08T18:10:24,123 writing manifest file '/tmp/pip-pip-egg-info-fhflmamk/ponytools.egg-info/SOURCES.txt' 2023-09-08T18:10:24,233 Preparing metadata (setup.py): finished with status 'done' 2023-09-08T18:10:24,237 Source in /tmp/pip-wheel-iea7pomy/ponytools_300768ce1a234cb883da440d32a59e3f has version 0.1.0, which satisfies requirement ponytools==0.1.0 from https://files.pythonhosted.org/packages/31/f4/426f093ad50b9e82b4f8d7cac3e2c1e8441fa02df47d78dad2a6836ead56/ponytools-0.1.0.tar.gz 2023-09-08T18:10:24,238 Removed ponytools==0.1.0 from https://files.pythonhosted.org/packages/31/f4/426f093ad50b9e82b4f8d7cac3e2c1e8441fa02df47d78dad2a6836ead56/ponytools-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-2wfnv9ol' 2023-09-08T18:10:24,242 Created temporary directory: /tmp/pip-unpack-5ze0nwbw 2023-09-08T18:10:24,243 Created temporary directory: /tmp/pip-unpack-26ulx9je 2023-09-08T18:10:24,250 Building wheels for collected packages: ponytools 2023-09-08T18:10:24,254 Created temporary directory: /tmp/pip-wheel-0wzppms6 2023-09-08T18:10:24,255 Building wheel for ponytools (setup.py): started 2023-09-08T18:10:24,256 Destination directory: /tmp/pip-wheel-0wzppms6 2023-09-08T18:10:24,257 Running command python setup.py bdist_wheel 2023-09-08T18:10:25,445 running bdist_wheel 2023-09-08T18:10:25,537 running build 2023-09-08T18:10:25,538 running build_py 2023-09-08T18:10:25,564 creating build 2023-09-08T18:10:25,565 creating build/lib 2023-09-08T18:10:25,569 creating build/lib/ponytools 2023-09-08T18:10:25,571 copying ponytools/MapPed.py -> build/lib/ponytools 2023-09-08T18:10:25,573 copying ponytools/__init__.py -> build/lib/ponytools 2023-09-08T18:10:25,575 copying ponytools/Trio.py -> build/lib/ponytools 2023-09-08T18:10:25,576 copying ponytools/Variant.py -> build/lib/ponytools 2023-09-08T18:10:25,578 copying ponytools/Allele.py -> build/lib/ponytools 2023-09-08T18:10:25,580 copying ponytools/VCFBuffer.py -> build/lib/ponytools 2023-09-08T18:10:25,582 copying ponytools/AxiomGeno.py -> build/lib/ponytools 2023-09-08T18:10:25,584 copying ponytools/setup.py -> build/lib/ponytools 2023-09-08T18:10:25,586 copying ponytools/Tools.py -> build/lib/ponytools 2023-09-08T18:10:25,589 copying ponytools/Fasta.py -> build/lib/ponytools 2023-09-08T18:10:25,591 copying ponytools/VCF.py -> build/lib/ponytools 2023-09-08T18:10:25,593 running build_scripts 2023-09-08T18:10:25,594 creating build/scripts-3.11 2023-09-08T18:10:25,595 error: [Errno 2] No such file or directory: 'bin/pyDi' 2023-09-08T18:10:25,704 ERROR: [present-rich] python setup.py bdist_wheel exited with 1 2023-09-08T18:10:25,717 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2023-09-08T18:10:25,717 exec(compile('"'"''"'"''"'"' 2023-09-08T18:10:25,717 # This is -- a caller that pip uses to run setup.py 2023-09-08T18:10:25,717 # 2023-09-08T18:10:25,717 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T18:10:25,717 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T18:10:25,717 # - It provides a clear error message when setuptools is not installed. 2023-09-08T18:10:25,717 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T18:10:25,717 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T18:10:25,717 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T18:10:25,717 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T18:10:25,717 import os, sys, tokenize 2023-09-08T18:10:25,717 2023-09-08T18:10:25,717 try: 2023-09-08T18:10:25,717 import setuptools 2023-09-08T18:10:25,717 except ImportError as error: 2023-09-08T18:10:25,717 print( 2023-09-08T18:10:25,717 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T18:10:25,717 "the build environment.", 2023-09-08T18:10:25,717 file=sys.stderr, 2023-09-08T18:10:25,717 ) 2023-09-08T18:10:25,717 sys.exit(1) 2023-09-08T18:10:25,717 2023-09-08T18:10:25,717 __file__ = %r 2023-09-08T18:10:25,717 sys.argv[0] = __file__ 2023-09-08T18:10:25,717 2023-09-08T18:10:25,717 if os.path.exists(__file__): 2023-09-08T18:10:25,717 filename = __file__ 2023-09-08T18:10:25,717 with tokenize.open(__file__) as f: 2023-09-08T18:10:25,717 setup_py_code = f.read() 2023-09-08T18:10:25,717 else: 2023-09-08T18:10:25,717 filename = "" 2023-09-08T18:10:25,717 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T18:10:25,717 2023-09-08T18:10:25,717 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T18:10:25,717 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-iea7pomy/ponytools_300768ce1a234cb883da440d32a59e3f/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-0wzppms6[/] 2023-09-08T18:10:25,718 [bold magenta]cwd[/]: /tmp/pip-wheel-iea7pomy/ponytools_300768ce1a234cb883da440d32a59e3f/ 2023-09-08T18:10:25,719 Building wheel for ponytools (setup.py): finished with status 'error' 2023-09-08T18:10:25,720 ERROR: Failed building wheel for ponytools 2023-09-08T18:10:25,721 Running setup.py clean for ponytools 2023-09-08T18:10:25,722 Running command python setup.py clean 2023-09-08T18:10:26,699 running clean 2023-09-08T18:10:26,745 removing 'build/lib' (and everything under it) 2023-09-08T18:10:26,749 'build/bdist.linux-armv7l' does not exist -- can't clean it 2023-09-08T18:10:26,750 removing 'build/scripts-3.11' (and everything under it) 2023-09-08T18:10:26,751 removing 'build' 2023-09-08T18:10:26,860 Failed to build ponytools 2023-09-08T18:10:26,861 ERROR: Failed to build one or more wheels 2023-09-08T18:10:26,863 Exception information: 2023-09-08T18:10:26,863 Traceback (most recent call last): 2023-09-08T18:10:26,863 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T18:10:26,863 status = run_func(*args) 2023-09-08T18:10:26,863 ^^^^^^^^^^^^^^^ 2023-09-08T18:10:26,863 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T18:10:26,863 return func(self, options, args) 2023-09-08T18:10:26,863 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:10:26,863 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-09-08T18:10:26,863 raise CommandError("Failed to build one or more wheels") 2023-09-08T18:10:26,863 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-09-08T18:10:26,866 Removed build tracker: '/tmp/pip-build-tracker-2wfnv9ol'