2023-09-08T18:16:52,778 Created temporary directory: /tmp/pip-build-tracker-nth6ajm3 2023-09-08T18:16:52,779 Initialized build tracking at /tmp/pip-build-tracker-nth6ajm3 2023-09-08T18:16:52,779 Created build tracker: /tmp/pip-build-tracker-nth6ajm3 2023-09-08T18:16:52,780 Entered build tracker: /tmp/pip-build-tracker-nth6ajm3 2023-09-08T18:16:52,781 Created temporary directory: /tmp/pip-wheel-irz_pa3g 2023-09-08T18:16:52,784 Created temporary directory: /tmp/pip-ephem-wheel-cache-zv8luggs 2023-09-08T18:16:52,805 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-09-08T18:16:52,809 2 location(s) to search for versions of hmmerclust: 2023-09-08T18:16:52,809 * https://pypi.org/simple/hmmerclust/ 2023-09-08T18:16:52,809 * https://www.piwheels.org/simple/hmmerclust/ 2023-09-08T18:16:52,810 Fetching project page and analyzing links: https://pypi.org/simple/hmmerclust/ 2023-09-08T18:16:52,811 Getting page https://pypi.org/simple/hmmerclust/ 2023-09-08T18:16:52,812 Found index url https://pypi.org/simple/ 2023-09-08T18:16:52,950 Fetched page https://pypi.org/simple/hmmerclust/ as application/vnd.pypi.simple.v1+json 2023-09-08T18:16:52,953 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/ba/2f/ae7fcf49d1468169d403ae7d47a010cbda4436edf3afdf6fdbe466018084/hmmerclust-0.0.1.dev1-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2023-09-08T18:16:52,953 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/7e/0f/25c384bee231991a77a341306dd28e2f0a12c1624de4f444406a5be189a0/hmmerclust-0.0.1.dev1-py2.7.egg (from https://pypi.org/simple/hmmerclust/) 2023-09-08T18:16:52,954 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/53/2c/a31e72a55345ac93ba1312302471efbdbd20e3dcf9cdf4d5b53a835409e3/hmmerclust-0.0.1.dev1-py3.4.egg (from https://pypi.org/simple/hmmerclust/) 2023-09-08T18:16:52,955 Found link https://files.pythonhosted.org/packages/df/69/20c573547efd11889053faec843babce75f4c3df39ec41b8dcdb15920cbf/hmmerclust-0.0.1.dev1.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev1 2023-09-08T18:16:52,955 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/5d/a1/b75c014ee8eb713b6472672c37dc1fc57bbc62b77d56ba2d578fc36422b1/hmmerclust-0.0.1.dev2-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2023-09-08T18:16:52,956 Found link https://files.pythonhosted.org/packages/79/46/cb88bae3df53fd222674c3a19d9981ff60918db20e2ff89fe24e12d791e4/hmmerclust-0.0.1.dev2.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev2 2023-09-08T18:16:52,956 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/88/10/82806f96a22347bd8de1226f016c369c8225f74278b810445409f047266a/hmmerclust-0.0.1.dev3-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2023-09-08T18:16:52,957 Found link https://files.pythonhosted.org/packages/5c/5d/47dc4e03b1ae405dc8a3d8637d1f47627b3e04a33f74da5303f5f4547431/hmmerclust-0.0.1.dev3.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev3 2023-09-08T18:16:52,958 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/66/87/7bea32389c9972060d8126499869f560ed3373299431b15154268dc125cd/hmmerclust-0.0.1.dev4-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2023-09-08T18:16:52,959 Found link https://files.pythonhosted.org/packages/19/58/01ee64c989c48313d83d3e7708fda60ad54b13e267c06d885b31330480b4/hmmerclust-0.0.1.dev4.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev4 2023-09-08T18:16:52,959 Skipping link: No binaries permitted for hmmerclust: https://files.pythonhosted.org/packages/23/95/328295fd6f72a5906725da18f0481f5ab466625b8b04a570352af157447e/hmmerclust-0.0.1.dev5-py2-none-any.whl (from https://pypi.org/simple/hmmerclust/) 2023-09-08T18:16:52,960 Found link https://files.pythonhosted.org/packages/09/04/23a8aca6d4b3eaf66d007aa89d0695a7f1f4033bfbc1c4b8bbc3141224a8/hmmerclust-0.0.1.dev5.tar.gz (from https://pypi.org/simple/hmmerclust/), version: 0.0.1.dev5 2023-09-08T18:16:52,961 Fetching project page and analyzing links: https://www.piwheels.org/simple/hmmerclust/ 2023-09-08T18:16:52,961 Getting page https://www.piwheels.org/simple/hmmerclust/ 2023-09-08T18:16:52,963 Found index url https://www.piwheels.org/simple/ 2023-09-08T18:16:53,237 Fetched page https://www.piwheels.org/simple/hmmerclust/ as text/html 2023-09-08T18:16:53,238 Skipping link: not a file: https://www.piwheels.org/simple/hmmerclust/ 2023-09-08T18:16:53,239 Skipping link: not a file: https://pypi.org/simple/hmmerclust/ 2023-09-08T18:16:53,257 Given no hashes to check 1 links for project 'hmmerclust': discarding no candidates 2023-09-08T18:16:53,275 Collecting hmmerclust==0.0.1.dev4 2023-09-08T18:16:53,277 Created temporary directory: /tmp/pip-unpack-zdqyygbs 2023-09-08T18:16:53,495 Downloading hmmerclust-0.0.1.dev4.tar.gz (12 kB) 2023-09-08T18:16:53,527 Added hmmerclust==0.0.1.dev4 from https://files.pythonhosted.org/packages/19/58/01ee64c989c48313d83d3e7708fda60ad54b13e267c06d885b31330480b4/hmmerclust-0.0.1.dev4.tar.gz to build tracker '/tmp/pip-build-tracker-nth6ajm3' 2023-09-08T18:16:53,528 Running setup.py (path:/tmp/pip-wheel-irz_pa3g/hmmerclust_26a34f4d4c814af8bb2e78d0f51bd384/setup.py) egg_info for package hmmerclust 2023-09-08T18:16:53,529 Created temporary directory: /tmp/pip-pip-egg-info-4n0lc4_y 2023-09-08T18:16:53,530 Preparing metadata (setup.py): started 2023-09-08T18:16:53,531 Running command python setup.py egg_info 2023-09-08T18:16:53,937 Traceback (most recent call last): 2023-09-08T18:16:53,937 File "", line 2, in 2023-09-08T18:16:53,938 File "", line 34, in 2023-09-08T18:16:53,939 File "/tmp/pip-wheel-irz_pa3g/hmmerclust_26a34f4d4c814af8bb2e78d0f51bd384/setup.py", line 16, in 2023-09-08T18:16:53,940 with open(path.join(here, 'DESCRIPTION.rst'), encoding='utf-8') as f: 2023-09-08T18:16:53,941 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:53,942 File "", line 906, in open 2023-09-08T18:16:53,943 FileNotFoundError: [Errno 2] No such file or directory: '/tmp/pip-wheel-irz_pa3g/hmmerclust_26a34f4d4c814af8bb2e78d0f51bd384/DESCRIPTION.rst' 2023-09-08T18:16:54,010 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-09-08T18:16:54,023 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-09-08T18:16:54,023 exec(compile('"'"''"'"''"'"' 2023-09-08T18:16:54,023 # This is -- a caller that pip uses to run setup.py 2023-09-08T18:16:54,023 # 2023-09-08T18:16:54,023 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-09-08T18:16:54,023 # import from `distutils.core` to work with newer packaging standards. 2023-09-08T18:16:54,023 # - It provides a clear error message when setuptools is not installed. 2023-09-08T18:16:54,023 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-09-08T18:16:54,023 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-09-08T18:16:54,023 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-09-08T18:16:54,023 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-09-08T18:16:54,023 import os, sys, tokenize 2023-09-08T18:16:54,023 2023-09-08T18:16:54,023 try: 2023-09-08T18:16:54,023 import setuptools 2023-09-08T18:16:54,023 except ImportError as error: 2023-09-08T18:16:54,023 print( 2023-09-08T18:16:54,023 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-09-08T18:16:54,023 "the build environment.", 2023-09-08T18:16:54,023 file=sys.stderr, 2023-09-08T18:16:54,023 ) 2023-09-08T18:16:54,023 sys.exit(1) 2023-09-08T18:16:54,023 2023-09-08T18:16:54,023 __file__ = %r 2023-09-08T18:16:54,023 sys.argv[0] = __file__ 2023-09-08T18:16:54,023 2023-09-08T18:16:54,023 if os.path.exists(__file__): 2023-09-08T18:16:54,023 filename = __file__ 2023-09-08T18:16:54,023 with tokenize.open(__file__) as f: 2023-09-08T18:16:54,023 setup_py_code = f.read() 2023-09-08T18:16:54,023 else: 2023-09-08T18:16:54,023 filename = "" 2023-09-08T18:16:54,023 setup_py_code = "from setuptools import setup; setup()" 2023-09-08T18:16:54,023 2023-09-08T18:16:54,023 exec(compile(setup_py_code, filename, "exec")) 2023-09-08T18:16:54,023 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-irz_pa3g/hmmerclust_26a34f4d4c814af8bb2e78d0f51bd384/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-4n0lc4_y[/] 2023-09-08T18:16:54,023 [bold magenta]cwd[/]: /tmp/pip-wheel-irz_pa3g/hmmerclust_26a34f4d4c814af8bb2e78d0f51bd384/ 2023-09-08T18:16:54,024 Preparing metadata (setup.py): finished with status 'error' 2023-09-08T18:16:54,026 ERROR: [present-rich] metadata generation failed 2023-09-08T18:16:54,031 Exception information: 2023-09-08T18:16:54,031 Traceback (most recent call last): 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-09-08T18:16:54,031 call_subprocess( 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-09-08T18:16:54,031 raise error 2023-09-08T18:16:54,031 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-09-08T18:16:54,031 2023-09-08T18:16:54,031 The above exception was the direct cause of the following exception: 2023-09-08T18:16:54,031 2023-09-08T18:16:54,031 Traceback (most recent call last): 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-09-08T18:16:54,031 status = run_func(*args) 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 248, in wrapper 2023-09-08T18:16:54,031 return func(self, options, args) 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 147, in run 2023-09-08T18:16:54,031 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-09-08T18:16:54,031 result = self._result = resolver.resolve( 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 546, in resolve 2023-09-08T18:16:54,031 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 397, in resolve 2023-09-08T18:16:54,031 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 173, in _add_to_criteria 2023-09-08T18:16:54,031 if not criterion.candidates: 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 156, in __bool__ 2023-09-08T18:16:54,031 return bool(self._sequence) 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-09-08T18:16:54,031 return any(self) 2023-09-08T18:16:54,031 ^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-09-08T18:16:54,031 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-09-08T18:16:54,031 candidate = func() 2023-09-08T18:16:54,031 ^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-09-08T18:16:54,031 self._link_candidate_cache[link] = LinkCandidate( 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 293, in __init__ 2023-09-08T18:16:54,031 super().__init__( 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 156, in __init__ 2023-09-08T18:16:54,031 self.dist = self._prepare() 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 225, in _prepare 2023-09-08T18:16:54,031 dist = self._prepare_distribution() 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 304, in _prepare_distribution 2023-09-08T18:16:54,031 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 538, in prepare_linked_requirement 2023-09-08T18:16:54,031 return self._prepare_linked_requirement(req, parallel_builds) 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 653, in _prepare_linked_requirement 2023-09-08T18:16:54,031 dist = _get_prepared_distribution( 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-09-08T18:16:54,031 abstract_dist.prepare_distribution_metadata( 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-09-08T18:16:54,031 self.req.prepare_metadata() 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/req/req_install.py", line 568, in prepare_metadata 2023-09-08T18:16:54,031 self.metadata_directory = generate_metadata_legacy( 2023-09-08T18:16:54,031 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-09-08T18:16:54,031 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-09-08T18:16:54,031 raise MetadataGenerationFailed(package_details=details) from error 2023-09-08T18:16:54,031 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-09-08T18:16:54,044 Removed hmmerclust==0.0.1.dev4 from https://files.pythonhosted.org/packages/19/58/01ee64c989c48313d83d3e7708fda60ad54b13e267c06d885b31330480b4/hmmerclust-0.0.1.dev4.tar.gz from build tracker '/tmp/pip-build-tracker-nth6ajm3' 2023-09-08T18:16:54,045 Removed build tracker: '/tmp/pip-build-tracker-nth6ajm3'